Query psy5073
Match_columns 115
No_of_seqs 113 out of 1328
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 16:33:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5073.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5073hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.8 4.4E-19 1.5E-23 125.1 11.3 108 6-113 370-483 (491)
2 1pw4_A Glycerol-3-phosphate tr 98.8 3.2E-08 1.1E-12 68.7 8.3 78 20-97 133-211 (451)
3 1pw4_A Glycerol-3-phosphate tr 98.6 6.4E-08 2.2E-12 67.2 4.6 71 22-92 362-433 (451)
4 2gfp_A EMRD, multidrug resista 98.5 3.7E-08 1.3E-12 67.2 3.1 78 21-98 103-180 (375)
5 2cfq_A Lactose permease; trans 98.5 1.7E-07 5.9E-12 65.2 6.4 76 26-101 332-408 (417)
6 4aps_A DI-OR tripeptide H+ sym 98.5 8.5E-07 2.9E-11 62.4 9.8 74 21-94 123-198 (491)
7 3o7q_A L-fucose-proton symport 98.4 2.5E-06 8.5E-11 59.0 9.8 77 21-97 132-235 (438)
8 4aps_A DI-OR tripeptide H+ sym 98.4 5.5E-07 1.9E-11 63.4 6.2 81 18-99 398-478 (491)
9 2xut_A Proton/peptide symporte 98.4 2.9E-06 1E-10 60.2 9.8 74 18-91 121-197 (524)
10 2xut_A Proton/peptide symporte 98.4 3.9E-07 1.3E-11 64.7 4.6 83 21-103 420-513 (524)
11 4gc0_A D-xylose-proton symport 97.8 0.00037 1.3E-08 48.8 11.2 75 21-96 141-223 (491)
12 3o7q_A L-fucose-proton symport 97.7 0.0003 1E-08 48.4 8.9 65 19-85 360-425 (438)
13 2gfp_A EMRD, multidrug resista 96.8 0.0015 5.1E-08 44.2 4.4 55 22-77 307-361 (375)
14 2cfq_A Lactose permease; trans 85.4 0.08 2.8E-06 36.5 -1.5 57 39-96 135-191 (417)
15 2dw3_A Intrinsic membrane prot 49.7 28 0.00095 18.4 5.7 35 64-98 25-59 (77)
16 4ene_A CLC-EC1, H(+)/CL(-) exc 40.9 74 0.0025 22.4 5.7 29 83-111 76-104 (446)
17 2b6o_A Aquaporin-0, lens fiber 36.9 64 0.0022 21.1 4.5 24 70-93 199-222 (263)
18 3nd0_A SLL0855 protein; CLC fa 32.6 75 0.0026 22.6 4.6 25 87-111 91-115 (466)
19 2nrg_A Intrinsic membrane prot 32.0 62 0.0021 17.3 5.3 34 65-98 27-60 (82)
20 1j4n_A Aquaporin 1; membrane p 30.5 1E+02 0.0034 20.3 4.7 29 70-98 209-237 (271)
21 1ots_A Voltage-gated CLC-type 24.3 1.9E+02 0.0066 20.4 10.1 28 84-111 92-119 (465)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.80 E-value=4.4e-19 Score=125.08 Aligned_cols=108 Identities=25% Similarity=0.444 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hchhHHHHHHH
Q psy5073 6 WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT------VGSAATYGLLG 79 (115)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 79 (115)
+..+.+..++...++.+.+++++.+.+|+||++.|++++|++...+++++++.+.++|.+.+. .++.+.|++++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~ 449 (491)
T 4gc0_A 370 IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYG 449 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 445566667777888889999999999999999999999999999999999999998877543 35556889999
Q ss_pred HHHHHHHHHHHhhcccCCCCCHHHHHHHHhcccc
Q psy5073 80 VICTLGAVFVYTRVPETKNKSFEAIQAELAMGYT 113 (115)
Q Consensus 80 ~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~~~ 113 (115)
+++++..++.++++||||++++||+|+.++++++
T Consensus 450 ~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 450 CMGVLAALFMWKFVPETKGKTLEELEALWEPETK 483 (491)
T ss_dssp HHHHHHHHHHHHHCCCCTTCCHHHHGGGTC----
T ss_pred HHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCc
Confidence 9999999999999999999999999988866544
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.78 E-value=3.2e-08 Score=68.69 Aligned_cols=78 Identities=13% Similarity=-0.067 Sum_probs=67.1
Q ss_pred hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073 20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLGAVFVYTRVPETK 97 (115)
Q Consensus 20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~ 97 (115)
.....+....+++|.+|++.|++++++......++..++|.+.+.+.+..+ |++.|++.++..++..++..+..||++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 133 QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 211 (451)
T ss_dssp HHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred hhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 334556667789999999999999999999999999999999999888888 999999998888887777777888753
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.56 E-value=6.4e-08 Score=67.15 Aligned_cols=71 Identities=11% Similarity=0.040 Sum_probs=59.8
Q ss_pred cccchhhhhhcccCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh
Q psy5073 22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWS-CLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTR 92 (115)
Q Consensus 22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (115)
+..+....+..|.+|++.|+++.|+......+ +..++|.+.+.+.+..+++..|.+.+++.++..++..+.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 362 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567899999999999999999999999 999999999999999999888888888777766655443
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.54 E-value=3.7e-08 Score=67.15 Aligned_cols=78 Identities=18% Similarity=0.027 Sum_probs=66.2
Q ss_pred hcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073 21 IGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKN 98 (115)
Q Consensus 21 ~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 98 (115)
....+....+++|.+|++.|+++.++......++..++|.+.+.+.+..+|++.|.+.++..++..+...+..||+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 103 GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 334566677899999999999999999999999999999999999888899999998888877777666677888644
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.54 E-value=1.7e-07 Score=65.17 Aligned_cols=76 Identities=8% Similarity=0.065 Sum_probs=62.4
Q ss_pred hhhhhhcccCChhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q psy5073 26 IPWFMMAEIIPLEAKLWSSSLL-MCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSF 101 (115)
Q Consensus 26 ~~~~~~~E~fp~~~R~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 101 (115)
..+.+.+|.+|++.|+++.++. .....+++.++|.+.+.+.+..+++..|.+.+++.++..++..+..||++..++
T Consensus 332 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 3456899999999999999996 666779999999999999988888778888888877777776777888766543
No 6
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.53 E-value=8.5e-07 Score=62.37 Aligned_cols=74 Identities=9% Similarity=0.026 Sum_probs=58.7
Q ss_pred hcccchhhhhhcccCChhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073 21 IGIGPIPWFMMAEIIPLEA--KLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVP 94 (115)
Q Consensus 21 ~~~~~~~~~~~~E~fp~~~--R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 94 (115)
....+....+++|.+|++. |+++.++......++..++|.+.+.+.+..+|++.|++.++..++..+...+..|
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 123 GFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3345667788999999998 7777777888889999999999999999999999998887766665555443333
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.42 E-value=2.5e-06 Score=58.97 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=59.0
Q ss_pred hcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhc-------------------------hhHH
Q psy5073 21 IGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI-DTVG-------------------------SAAT 74 (115)
Q Consensus 21 ~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------------------~~~~ 74 (115)
....+....+++|.+|++.|++++++......++..+++.+...+. +..+ |++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 211 (438)
T 3o7q_A 132 GCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTP 211 (438)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHH
Confidence 3445566678999999999999999999999999999999999988 4443 8888
Q ss_pred HHHHHHHHHHHHHHHHh-hcccCC
Q psy5073 75 YGLLGVICTLGAVFVYT-RVPETK 97 (115)
Q Consensus 75 ~~~~~~~~~~~~~~~~~-~~pet~ 97 (115)
|.+.+....+..++..+ ..||++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~~~ 235 (438)
T 3o7q_A 212 YMIIVAIVLLVALLIMLTKFPALQ 235 (438)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHcCCccc
Confidence 87777666655554433 356654
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.40 E-value=5.5e-07 Score=63.37 Aligned_cols=81 Identities=10% Similarity=0.036 Sum_probs=60.0
Q ss_pred HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073 18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK 97 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 97 (115)
.......+....+..|.+|++.|++++|+......++..+++.+.+.+.+. +..+.|...+...++..++.++..|+.+
T Consensus 398 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 398 LGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445677788999999999999999999999999999999998877543 5557888888888877777777777765
Q ss_pred CC
Q psy5073 98 NK 99 (115)
Q Consensus 98 ~~ 99 (115)
++
T Consensus 477 ~~ 478 (491)
T 4aps_A 477 GL 478 (491)
T ss_dssp --
T ss_pred HH
Confidence 54
No 9
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.39 E-value=2.9e-06 Score=60.16 Aligned_cols=74 Identities=20% Similarity=0.264 Sum_probs=58.4
Q ss_pred HHhhcccchhhhhhcccCChhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh
Q psy5073 18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSL---LMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYT 91 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (115)
+......+....+++|.+|++.|++..+. ......++..++|.+.+.+.+..+|++.|.+.++..++..+...+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 121 LGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 33444557777889999999999877666 788888999999999999988899999998888776665554433
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.36 E-value=3.9e-07 Score=64.67 Aligned_cols=83 Identities=8% Similarity=-0.101 Sum_probs=53.6
Q ss_pred hcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ch---------hHHHHHHHHHHHHHHHHH
Q psy5073 21 IGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV--GS---------AATYGLLGVICTLGAVFV 89 (115)
Q Consensus 21 ~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~~~~~~~~~ 89 (115)
....+....+..|..|++.|++++|+......+++.+++.+.+.+.+.. +| +..|++.+.+.++..++.
T Consensus 420 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (524)
T 2xut_A 420 VLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVF 499 (524)
T ss_dssp HHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHH
Confidence 3445666778999999999999999999999999999999998876532 12 223666666667666666
Q ss_pred HhhcccCCCCCHHH
Q psy5073 90 YTRVPETKNKSFEA 103 (115)
Q Consensus 90 ~~~~pet~~~~~~~ 103 (115)
.++.+++++++.++
T Consensus 500 ~~~~~~~~~~~~~~ 513 (524)
T 2xut_A 500 ALYARSYQMQDHYR 513 (524)
T ss_dssp C-------------
T ss_pred HHHHHHhccchhhh
Confidence 66677776655443
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.83 E-value=0.00037 Score=48.85 Aligned_cols=75 Identities=16% Similarity=0.001 Sum_probs=50.4
Q ss_pred hcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------chhHHHHHHHHHHHHHHHHHHhh
Q psy5073 21 IGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV--------GSAATYGLLGVICTLGAVFVYTR 92 (115)
Q Consensus 21 ~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 92 (115)
.+..+....+++|..|++.|++..++.......+...++.+........ .|+..+....+. .+..++..+.
T Consensus 141 G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 219 (491)
T 4gc0_A 141 GLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIP-ALLFLMLLYT 219 (491)
T ss_dssp HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHH-HHHHHHHGGG
T ss_pred HHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhh-hhhhhhhhhc
Confidence 3445667789999999999999999998887777777766666554432 244334433333 3333455578
Q ss_pred cccC
Q psy5073 93 VPET 96 (115)
Q Consensus 93 ~pet 96 (115)
.||+
T Consensus 220 ~peS 223 (491)
T 4gc0_A 220 VPES 223 (491)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8986
No 12
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.69 E-value=0.0003 Score=48.45 Aligned_cols=65 Identities=12% Similarity=0.025 Sum_probs=50.2
Q ss_pred HhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHH
Q psy5073 19 FRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLG 85 (115)
Q Consensus 19 ~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 85 (115)
......|....+..|.+|++ |+.+.++.. .+.+++.++|.+.+.+.+..| ++..|.+.++..++.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 360 FMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 33445677777889999987 999998877 667999999999999999988 877777655443333
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=96.79 E-value=0.0015 Score=44.20 Aligned_cols=55 Identities=11% Similarity=-0.140 Sum_probs=45.7
Q ss_pred cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q psy5073 22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGL 77 (115)
Q Consensus 22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (115)
...+....+..|.+| +.|+++.|+......++..+++.+.+.+.+..++...+..
T Consensus 307 ~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 307 MLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 356677788999999 8999999999999999999999999998877776544444
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=85.40 E-value=0.08 Score=36.49 Aligned_cols=57 Identities=7% Similarity=0.013 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 39 AKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 39 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
.|+...|.......++..++|.+..++.+ .+|++.|++.++..++..+...+..||+
T Consensus 135 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 135 RSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp HHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccc
Confidence 34555566655667788888988888876 5788877766555433333332233443
No 15
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=49.70 E-value=28 Score=18.41 Aligned_cols=35 Identities=14% Similarity=-0.008 Sum_probs=19.8
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073 64 DLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKN 98 (115)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 98 (115)
.|.+--+|..++++...+.++...++-..+||.+.
T Consensus 25 qMlkGAg~AAv~f~~~~~~lv~l~~iG~~LPE~Sr 59 (77)
T 2dw3_A 25 QMMKGAGWAGGVFFGTLLLIGFFRVVGRMLPIQEN 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTCS
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHhCchhcc
Confidence 33444455555555544555555566678899644
No 16
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=40.91 E-value=74 Score=22.45 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=20.1
Q ss_pred HHHHHHHHhhcccCCCCCHHHHHHHHhcc
Q psy5073 83 TLGAVFVYTRVPETKNKSFEAIQAELAMG 111 (115)
Q Consensus 83 ~~~~~~~~~~~pet~~~~~~~~~~~~~~~ 111 (115)
.+...+..++.|+.++..++|+++..+++
T Consensus 76 ~~~~~l~~~~~p~a~GsGip~v~~~l~~~ 104 (446)
T 4ene_A 76 MFGYFLVRKYAPEAGGSGIPEIEGALEDQ 104 (446)
T ss_dssp HHHHHHHHHHCGGGSSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcccCCCCHHHHHHHHhCC
Confidence 34444555668999999988887776653
No 17
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=36.94 E-value=64 Score=21.09 Aligned_cols=24 Identities=17% Similarity=0.029 Sum_probs=14.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhc
Q psy5073 70 GSAATYGLLGVICTLGAVFVYTRV 93 (115)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~ 93 (115)
+++|++++-=++..+...+.+.++
T Consensus 199 ~~~Wvy~vgP~~Ga~la~~~y~~l 222 (263)
T 2b6o_A 199 TNHWVYWVGPVIGAGLGSLLYDFL 222 (263)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHHTT
T ss_pred cceeHHHHHHHHHHHHHHHHHHHH
Confidence 445677666566666666666554
No 18
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=32.64 E-value=75 Score=22.62 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=18.1
Q ss_pred HHHHhhcccCCCCCHHHHHHHHhcc
Q psy5073 87 VFVYTRVPETKNKSFEAIQAELAMG 111 (115)
Q Consensus 87 ~~~~~~~pet~~~~~~~~~~~~~~~ 111 (115)
.+..++.|+.++..++|+.+..+++
T Consensus 91 ~l~~~~~p~a~GsGIp~v~~~l~g~ 115 (466)
T 3nd0_A 91 WLMKRFAPDTSGSGIPQIEGHLEGK 115 (466)
T ss_dssp HHHTTTCGGGSBCSHHHHHHHTTSS
T ss_pred HHHHHHCCCcCCCCHHHHHHHHcCC
Confidence 3444677999999998887766543
No 19
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=32.04 E-value=62 Score=17.26 Aligned_cols=34 Identities=15% Similarity=-0.017 Sum_probs=19.4
Q ss_pred HHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073 65 LIDTVGSAATYGLLGVICTLGAVFVYTRVPETKN 98 (115)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 98 (115)
+..--+|..++++...+.++...++-..+||.+.
T Consensus 27 MlKGAG~AAv~fl~~~~~lv~l~~iG~~LPE~Sr 60 (82)
T 2nrg_A 27 MMKGAGWAGGVFFGTLLLIGFFRVVGRMLPIQEN 60 (82)
T ss_dssp HTHHHHTHHHHHHHHHHHHHHHHHHHHSSTTTTT
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHhCchhcc
Confidence 3344455555555555555555566678899644
No 20
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=30.51 E-value=1e+02 Score=20.25 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=16.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073 70 GSAATYGLLGVICTLGAVFVYTRVPETKN 98 (115)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 98 (115)
.++|++++-=++..+...+.+.++-+.+.
T Consensus 209 ~~~wv~~vgP~~Ga~la~~~y~~~~~~~~ 237 (271)
T 1j4n_A 209 QDHWIFWVGPFIGAALAVLIYDFILAPRS 237 (271)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHTTTSCCS
T ss_pred cceeHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44567766555566655566655544333
No 21
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=24.34 E-value=1.9e+02 Score=20.44 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=19.7
Q ss_pred HHHHHHHhhcccCCCCCHHHHHHHHhcc
Q psy5073 84 LGAVFVYTRVPETKNKSFEAIQAELAMG 111 (115)
Q Consensus 84 ~~~~~~~~~~pet~~~~~~~~~~~~~~~ 111 (115)
+...+..++.|+.+++.++|+.+..+++
T Consensus 92 l~~~l~~~~~p~a~GsGip~v~~~l~~~ 119 (465)
T 1ots_A 92 FGYFLVRKYAPEAGGSGIPEIEGALEDQ 119 (465)
T ss_dssp HHHHHHHHHCGGGSSCSHHHHHHHHTTC
T ss_pred HHHHHHHHhCccccCCChHHHHHHHhCC
Confidence 3334444578999999888888777654
Done!