RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5073
(115 letters)
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 62.4 bits (152), Expect = 1e-12
Identities = 30/100 (30%), Positives = 55/100 (55%)
Query: 5 SWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMD 64
+ I + +A F +G GP+PW +++EI PL + S+ + +W F+V +F
Sbjct: 382 GNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPT 441
Query: 65 LIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAI 104
+++++G + G + LG +FVY +PETK ++ E I
Sbjct: 442 MLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 56.2 bits (136), Expect = 2e-10
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 7 IPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVF--MD 64
+ + S+ VA F + GP+ W +++EI P + + ++ + W + VS F MD
Sbjct: 365 VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMD 424
Query: 65 ----LIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFE 102
L+ + +Y + G + L A+F++ VPETK K+ E
Sbjct: 425 KNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLE 466
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 54.2 bits (131), Expect = 8e-10
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 7 IPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI 66
+ I + +A F +G GP+PW +++E+ PL + + ++ +W FL+ +F +
Sbjct: 349 VAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIIT 408
Query: 67 DTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAEL 108
+G + + + L +FV+ VPETK ++ E I
Sbjct: 409 GAIG-GYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
>gnl|CDD|233002 TIGR00510, lipA, lipoate synthase. This enzyme is an iron-sulfur
protein. It is localized to mitochondria in yeast and
Arabidopsis. It generates lipoic acid, a thiol
antioxidant that is linked to a specific Lys as
prosthetic group for the pyruvate and
alpha-ketoglutarate dehydrogenase complexes and the
glycine-cleavage system. The family shows strong
sequence conservation [Biosynthesis of cofactors,
prosthetic groups, and carriers, Lipoate].
Length = 302
Score = 26.3 bits (58), Expect = 3.5
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 73 ATYGLLGVICTLGAVFV---YTRVP-----ETKNKSFEAIQAELAMGYTAL 115
AT+ +LG ICT F + R P E K E I+ + + Y +
Sbjct: 64 ATFMILGDICTRRCPFCDVAHGRNPLPPDPEEPAKLAETIKD-MGLKYVVI 113
>gnl|CDD|226289 COG3766, COG3766, Predicted membrane protein [Function unknown].
Length = 133
Score = 25.4 bits (56), Expect = 5.5
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 62 FMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAIQA 106
M ++ + + A Y +GV+ + +F+Y +V T K +E I+
Sbjct: 1 MMHFLEGLLAFAAYFSVGVLMLILFLFIYEKV--TPYKEWELIKE 43
>gnl|CDD|237901 PRK15072, PRK15072, bifunctional D-altronate/D-mannonate
dehydratase; Provisional.
Length = 404
Score = 26.0 bits (58), Expect = 5.9
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 13/65 (20%)
Query: 58 VSKVFMDLIDTVGSAA---TYGLLGVICTLGAVFVYTR-----VPETKNKSFEAIQAELA 109
++ V M L D AA Y LLG G V VY + E + + L
Sbjct: 86 IAAVDMALWDIKAKAAGMPLYQLLGGASREG-VMVYGHANGRDIDEL----LDDVARHLE 140
Query: 110 MGYTA 114
+GY A
Sbjct: 141 LGYKA 145
>gnl|CDD|219255 pfam06990, Gal-3-0_sulfotr, Galactose-3-O-sulfotransferase. This
family consists of several mammalian
galactose-3-O-sulfotransferase proteins.
Gal-3-O-sulfotransferase is thought to play a critical
role in 3'-sulfation of N-acetyllactosamine in both O-
and N-glycans.
Length = 400
Score = 25.6 bits (56), Expect = 6.7
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 27 PWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYG 76
PW MA+ + L A ++S LL+ YS++ L + + + S +
Sbjct: 12 PWESMAKGLVLGALGFTSFLLLVYSYAVPPLHAGLASTTPEFAASCSPPA 61
>gnl|CDD|222144 pfam13458, Peripla_BP_6, Periplasmic binding protein. This
family includes a diverse range of periplasmic binding
proteins.
Length = 343
Score = 25.3 bits (56), Expect = 7.8
Identities = 6/37 (16%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 55 LFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYT 91
L V + + SA + V+ G +
Sbjct: 64 LVDQDGVDA-IFGGLTSAVALAVAPVLEKKGVPLIGP 99
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 25.4 bits (56), Expect = 9.3
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 3 DYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWS 53
+Y+ +F +V + GI + E +P + + L+ +S
Sbjct: 179 NYTVFLVFR--LLVGMGIGGIWVQAVVLNTEFLPKKQRAI-VGTLIQVFFS 226
>gnl|CDD|99978 cd03806, GT1_ALG11_like, This family is most closely related to the
GT1 family of glycosyltransferases. ALG11 in yeast is
involved in adding the final 1,2-linked Man to the
Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of
the ER. The deletion analysis of ALG11 was shown to
block the early steps of core biosynthesis that takes
place on the cytoplasmic face of the ER and lead to a
defect in the assembly of lipid-linked oligosaccharides.
Length = 419
Score = 25.2 bits (56), Expect = 9.6
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 48 MCYSWSCLF-LVSKVFMDLIDTVGSAATYGL 77
M L LV +F IDT+G TY L
Sbjct: 96 MILGLEALLKLVPDIF---IDTMGYPFTYPL 123
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.140 0.451
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,874,524
Number of extensions: 494601
Number of successful extensions: 668
Number of sequences better than 10.0: 1
Number of HSP's gapped: 666
Number of HSP's successfully gapped: 43
Length of query: 115
Length of database: 10,937,602
Length adjustment: 79
Effective length of query: 36
Effective length of database: 7,433,636
Effective search space: 267610896
Effective search space used: 267610896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.1 bits)