Query psy5074
Match_columns 204
No_of_seqs 263 out of 1027
Neff 10.9
Searched_HMMs 46136
Date Fri Aug 16 16:35:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5074.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5074hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569|consensus 99.9 4.4E-25 9.5E-30 172.4 18.2 196 2-200 276-472 (485)
2 PRK10077 xylE D-xylose transpo 99.9 7.1E-21 1.5E-25 152.0 22.5 192 5-203 280-478 (479)
3 KOG0254|consensus 99.9 1.2E-20 2.6E-25 151.8 19.0 199 2-200 301-501 (513)
4 TIGR00887 2A0109 phosphate:H+ 99.8 3.8E-19 8.3E-24 142.9 17.9 176 11-195 303-501 (502)
5 TIGR02332 HpaX 4-hydroxyphenyl 99.8 1.7E-18 3.8E-23 135.9 20.0 172 4-187 16-194 (412)
6 TIGR00893 2A0114 d-galactonate 99.8 5.6E-19 1.2E-23 137.0 17.0 169 6-186 4-173 (399)
7 PRK03545 putative arabinose tr 99.8 2.9E-18 6.3E-23 133.7 18.8 160 15-186 28-188 (390)
8 TIGR00879 SP MFS transporter, 99.8 4E-18 8.7E-23 135.4 19.3 186 5-191 293-479 (481)
9 PRK11663 regulatory protein Uh 99.8 3.3E-18 7.1E-23 135.2 17.1 168 6-185 33-201 (434)
10 PRK10473 multidrug efflux syst 99.8 4.3E-18 9.3E-23 132.8 17.6 173 3-187 10-183 (392)
11 TIGR00710 efflux_Bcr_CflA drug 99.8 3.6E-18 7.9E-23 132.6 17.1 167 9-187 18-185 (385)
12 PRK10213 nepI ribonucleoside t 99.8 7.7E-18 1.7E-22 131.5 18.9 160 15-186 39-199 (394)
13 PRK14995 methyl viologen resis 99.8 4.4E-18 9.6E-23 136.5 17.7 172 3-186 13-186 (495)
14 COG2814 AraJ Arabinose efflux 99.8 8.5E-18 1.8E-22 128.3 18.1 167 5-183 22-189 (394)
15 TIGR00711 efflux_EmrB drug res 99.8 1.4E-18 3.1E-23 138.9 14.6 171 4-186 10-181 (485)
16 TIGR00903 2A0129 major facilit 99.8 7.5E-18 1.6E-22 130.3 17.8 162 12-186 7-169 (368)
17 PRK10091 MFS transport protein 99.8 7.2E-18 1.6E-22 131.2 17.8 167 9-187 16-183 (382)
18 PRK15403 multidrug efflux syst 99.8 1.2E-17 2.6E-22 131.2 18.2 161 15-187 35-196 (413)
19 TIGR00900 2A0121 H+ Antiporter 99.8 1.3E-17 2.7E-22 128.4 17.6 170 4-180 7-177 (365)
20 TIGR00891 2A0112 putative sial 99.8 3.1E-17 6.7E-22 128.0 20.0 170 4-186 20-192 (405)
21 PF07690 MFS_1: Major Facilita 99.8 1.8E-18 3.9E-23 132.5 12.5 170 3-184 3-174 (352)
22 PRK10054 putative transporter; 99.8 1.7E-17 3.7E-22 129.6 17.8 171 3-186 14-186 (395)
23 TIGR00881 2A0104 phosphoglycer 99.8 2.8E-18 6E-23 132.6 12.7 170 4-185 3-174 (379)
24 TIGR01299 synapt_SV2 synaptic 99.8 3.1E-17 6.7E-22 135.7 19.0 140 36-189 601-740 (742)
25 PRK11102 bicyclomycin/multidru 99.8 2.4E-17 5.2E-22 127.8 17.0 162 13-186 8-170 (377)
26 PRK11551 putative 3-hydroxyphe 99.8 2.2E-17 4.7E-22 129.3 16.5 166 9-186 28-194 (406)
27 TIGR00895 2A0115 benzoate tran 99.8 8.9E-18 1.9E-22 130.7 13.8 165 10-186 31-196 (398)
28 PRK15402 multidrug efflux syst 99.8 5.9E-17 1.3E-21 127.0 18.0 165 11-187 28-193 (406)
29 TIGR01299 synapt_SV2 synaptic 99.8 1.1E-16 2.5E-21 132.3 20.3 161 13-186 184-358 (742)
30 PRK12307 putative sialic acid 99.8 5.9E-17 1.3E-21 127.6 17.8 152 6-169 28-180 (426)
31 PF00083 Sugar_tr: Sugar (and 99.8 8.4E-22 1.8E-26 156.2 -9.7 191 3-197 260-451 (451)
32 PRK10504 putative transporter; 99.8 1.1E-16 2.3E-21 127.8 18.7 170 4-185 18-188 (471)
33 PLN00028 nitrate transmembrane 99.8 1.9E-16 4E-21 126.6 19.7 167 5-184 45-221 (476)
34 PRK09874 drug efflux system pr 99.8 4E-16 8.7E-21 122.2 20.2 168 5-185 23-196 (408)
35 TIGR00886 2A0108 nitrite extru 99.7 2.2E-16 4.7E-21 121.9 18.0 170 4-185 9-191 (366)
36 PRK11043 putative transporter; 99.7 3.7E-16 8.1E-21 122.3 19.0 159 13-183 23-182 (401)
37 PRK11652 emrD multidrug resist 99.7 4.2E-16 9.1E-21 121.7 19.1 161 14-186 26-187 (394)
38 TIGR00890 2A0111 Oxalate/Forma 99.7 6.2E-17 1.3E-21 125.0 13.9 160 12-184 19-179 (377)
39 PRK10642 proline/glycine betai 99.7 2.7E-16 5.8E-21 126.1 17.3 171 8-188 262-435 (490)
40 PRK11646 multidrug resistance 99.7 8E-16 1.7E-20 120.4 19.4 168 5-185 19-188 (400)
41 PRK10077 xylE D-xylose transpo 99.7 1.1E-15 2.4E-20 122.2 19.6 158 27-186 51-218 (479)
42 PRK03699 putative transporter; 99.7 7E-16 1.5E-20 120.5 18.0 155 13-179 24-180 (394)
43 PRK03893 putative sialic acid 99.7 4.4E-16 9.5E-21 125.0 17.2 168 5-185 29-197 (496)
44 COG2271 UhpC Sugar phosphate p 99.7 4.4E-17 9.5E-22 123.7 10.6 161 14-186 47-210 (448)
45 TIGR00899 2A0120 sugar efflux 99.7 8.8E-16 1.9E-20 118.9 17.8 173 2-186 3-180 (375)
46 TIGR00887 2A0109 phosphate:H+ 99.7 2.4E-15 5.1E-20 121.1 20.5 145 33-185 59-227 (502)
47 PRK11273 glpT sn-glycerol-3-ph 99.7 1.5E-15 3.3E-20 120.7 18.2 163 15-186 48-212 (452)
48 cd06174 MFS The Major Facilita 99.7 1.5E-15 3.3E-20 116.0 17.1 163 4-178 7-170 (352)
49 TIGR00712 glpT glycerol-3-phos 99.7 6.2E-16 1.4E-20 122.4 15.0 162 15-185 46-209 (438)
50 TIGR00892 2A0113 monocarboxyla 99.7 1.3E-15 2.8E-20 121.1 16.7 158 13-183 36-195 (455)
51 KOG1330|consensus 99.7 6.5E-18 1.4E-22 129.4 3.5 164 13-188 50-215 (493)
52 PRK10406 alpha-ketoglutarate t 99.7 2.3E-15 5.1E-20 118.9 18.1 176 6-186 32-222 (432)
53 PRK10642 proline/glycine betai 99.7 3.4E-15 7.3E-20 119.8 19.1 176 6-186 26-216 (490)
54 PRK09705 cynX putative cyanate 99.7 1E-15 2.2E-20 119.7 15.6 149 13-174 26-176 (393)
55 PRK09556 uhpT sugar phosphate 99.7 1.8E-15 3.9E-20 120.8 17.3 164 7-180 269-447 (467)
56 PRK10489 enterobactin exporter 99.7 2.1E-15 4.6E-20 118.7 16.7 172 13-196 240-413 (417)
57 PRK11195 lysophospholipid tran 99.7 3.9E-15 8.5E-20 116.3 17.5 157 13-186 20-177 (393)
58 TIGR00897 2A0118 polyol permea 99.7 3.6E-15 7.7E-20 116.9 17.1 171 6-184 23-195 (402)
59 PRK05122 major facilitator sup 99.7 2.8E-15 6.1E-20 117.2 16.3 165 5-174 24-191 (399)
60 PRK15462 dipeptide/tripeptide 99.7 5E-15 1.1E-19 117.6 17.7 159 8-177 21-184 (493)
61 PRK09556 uhpT sugar phosphate 99.7 7.7E-16 1.7E-20 122.8 12.9 164 14-184 47-214 (467)
62 TIGR00894 2A0114euk Na(+)-depe 99.7 9.7E-16 2.1E-20 122.2 13.5 151 25-185 70-222 (465)
63 TIGR00889 2A0110 nucleoside tr 99.7 1.1E-14 2.3E-19 114.7 18.8 167 14-188 226-408 (418)
64 PRK12382 putative transporter; 99.7 4.2E-15 9E-20 116.0 16.2 157 11-171 30-188 (392)
65 KOG0253|consensus 99.7 2E-15 4.4E-20 113.0 13.5 144 33-190 384-527 (528)
66 TIGR00924 yjdL_sub1_fam amino 99.7 5.5E-15 1.2E-19 118.0 17.1 160 5-176 19-186 (475)
67 PRK10207 dipeptide/tripeptide 99.7 5.3E-15 1.2E-19 118.4 16.7 152 8-170 26-182 (489)
68 PRK15075 citrate-proton sympor 99.7 5.8E-15 1.3E-19 116.8 16.7 163 3-169 22-199 (434)
69 TIGR00898 2A0119 cation transp 99.7 2.5E-15 5.5E-20 120.9 14.8 154 17-186 110-267 (505)
70 PRK11902 ampG muropeptide tran 99.7 8.2E-15 1.8E-19 114.8 17.2 172 3-186 6-185 (402)
71 TIGR00879 SP MFS transporter, 99.7 5.3E-15 1.2E-19 117.6 16.5 162 15-186 47-220 (481)
72 PRK10489 enterobactin exporter 99.7 5.2E-15 1.1E-19 116.4 15.8 172 6-185 27-199 (417)
73 TIGR00901 2A0125 AmpG-related 99.7 9.4E-15 2E-19 112.6 16.8 163 13-186 5-182 (356)
74 TIGR00885 fucP L-fucose:H+ sym 99.7 9.9E-15 2.1E-19 114.6 17.0 167 9-184 16-210 (410)
75 PRK12307 putative sialic acid 99.7 2.2E-14 4.8E-19 113.1 18.5 139 13-162 248-388 (426)
76 PRK11551 putative 3-hydroxyphe 99.7 8.9E-15 1.9E-19 114.6 16.1 163 6-180 230-394 (406)
77 TIGR00898 2A0119 cation transp 99.6 1.6E-14 3.5E-19 116.3 17.5 147 33-192 358-504 (505)
78 PRK09952 shikimate transporter 99.6 2.6E-14 5.7E-19 113.2 18.3 143 39-186 73-223 (438)
79 TIGR00880 2_A_01_02 Multidrug 99.6 1.2E-14 2.6E-19 96.8 14.0 136 38-185 6-141 (141)
80 PRK09705 cynX putative cyanate 99.6 4.7E-14 1E-18 110.3 19.4 169 8-189 217-388 (393)
81 PRK15034 nitrate/nitrite trans 99.6 7E-14 1.5E-18 110.1 20.3 170 9-186 47-236 (462)
82 PRK11663 regulatory protein Uh 99.6 1.4E-14 3E-19 114.6 16.6 169 10-188 257-430 (434)
83 PRK09952 shikimate transporter 99.6 6.4E-14 1.4E-18 111.0 19.3 171 7-186 261-436 (438)
84 PRK03893 putative sialic acid 99.6 1.6E-14 3.4E-19 116.0 15.5 147 14-170 293-441 (496)
85 TIGR00890 2A0111 Oxalate/Forma 99.6 3.8E-14 8.3E-19 109.4 16.9 151 14-174 223-374 (377)
86 PRK11273 glpT sn-glycerol-3-ph 99.6 8.4E-14 1.8E-18 110.8 18.7 167 10-186 267-440 (452)
87 PRK15075 citrate-proton sympor 99.6 5.9E-14 1.3E-18 111.1 17.8 145 8-161 250-398 (434)
88 PRK09584 tppB putative tripept 99.6 5.2E-14 1.1E-18 113.1 17.5 159 6-175 31-194 (500)
89 cd06174 MFS The Major Facilita 99.6 9.1E-14 2E-18 106.2 18.1 164 4-179 183-349 (352)
90 KOG0252|consensus 99.6 6.1E-16 1.3E-20 118.6 5.9 178 11-196 319-511 (538)
91 PF06609 TRI12: Fungal trichot 99.6 9.5E-15 2E-19 117.5 12.6 153 16-181 64-216 (599)
92 PRK05122 major facilitator sup 99.6 1.4E-13 3E-18 107.7 19.0 161 12-186 232-392 (399)
93 TIGR00896 CynX cyanate transpo 99.6 3E-14 6.5E-19 109.8 14.7 150 10-173 14-166 (355)
94 COG2223 NarK Nitrate/nitrite t 99.6 3.8E-14 8.2E-19 107.9 14.8 161 14-185 32-196 (417)
95 KOG0255|consensus 99.6 4.4E-14 9.5E-19 114.2 16.0 138 33-186 121-258 (521)
96 PRK03633 putative MFS family t 99.6 1.1E-13 2.3E-18 107.8 17.3 142 5-158 15-157 (381)
97 PRK11010 ampG muropeptide tran 99.6 1.3E-13 2.7E-18 110.7 18.0 171 4-186 20-198 (491)
98 PRK15011 sugar efflux transpor 99.6 1.3E-13 2.9E-18 107.7 17.4 169 5-186 24-198 (393)
99 PRK15011 sugar efflux transpor 99.6 3.1E-13 6.8E-18 105.6 18.5 158 13-184 233-392 (393)
100 PRK10406 alpha-ketoglutarate t 99.6 2.4E-13 5.1E-18 107.6 18.0 163 9-180 256-422 (432)
101 KOG2532|consensus 99.6 9.7E-14 2.1E-18 109.8 15.4 150 26-185 68-219 (466)
102 TIGR00897 2A0118 polyol permea 99.6 9.3E-13 2E-17 103.3 19.1 166 6-180 232-399 (402)
103 PTZ00207 hypothetical protein; 99.6 1.1E-12 2.4E-17 106.2 19.6 164 12-184 43-207 (591)
104 PRK10133 L-fucose transporter; 99.6 7.3E-13 1.6E-17 104.9 18.4 141 5-154 35-176 (438)
105 TIGR00806 rfc RFC reduced fola 99.6 6.4E-13 1.4E-17 103.9 17.5 136 15-164 45-182 (511)
106 PRK12382 putative transporter; 99.6 1.1E-12 2.4E-17 102.5 18.9 160 10-182 230-389 (392)
107 TIGR00712 glpT glycerol-3-phos 99.6 2.2E-13 4.9E-18 107.9 15.2 170 8-186 263-437 (438)
108 KOG2615|consensus 99.6 8.8E-14 1.9E-18 104.6 11.9 111 33-156 71-181 (451)
109 PRK09528 lacY galactoside perm 99.6 4.4E-13 9.6E-18 105.6 16.5 157 17-185 244-406 (420)
110 TIGR00883 2A0106 metabolite-pr 99.5 7.6E-13 1.7E-17 102.8 17.4 170 9-186 6-194 (394)
111 PRK09528 lacY galactoside perm 99.5 7.3E-13 1.6E-17 104.4 16.6 172 4-184 18-193 (420)
112 TIGR00899 2A0120 sugar efflux 99.5 2.1E-12 4.6E-17 100.0 17.9 154 14-180 217-372 (375)
113 PRK03545 putative arabinose tr 99.5 3.9E-12 8.5E-17 99.3 19.4 157 13-182 222-380 (390)
114 PRK11128 putative 3-phenylprop 99.5 1.9E-12 4.1E-17 100.8 17.5 164 5-185 13-181 (382)
115 PRK03633 putative MFS family t 99.5 4.8E-12 1E-16 98.6 19.4 151 13-178 217-368 (381)
116 TIGR00893 2A0114 d-galactonate 99.5 1.3E-12 2.8E-17 101.3 16.2 165 6-179 225-396 (399)
117 TIGR00805 oat sodium-independe 99.5 1.7E-13 3.7E-18 112.8 11.7 178 7-185 44-283 (633)
118 TIGR00902 2A0127 phenyl propri 99.5 1.7E-12 3.7E-17 101.1 16.6 154 4-170 12-167 (382)
119 COG2271 UhpC Sugar phosphate p 99.5 3.3E-13 7.2E-18 102.9 11.8 164 9-181 265-433 (448)
120 TIGR02718 sider_RhtX_FptX side 99.5 3.6E-12 7.7E-17 99.6 18.1 174 3-184 8-186 (390)
121 TIGR02332 HpaX 4-hydroxyphenyl 99.5 9.2E-13 2E-17 103.6 14.8 155 4-170 250-409 (412)
122 PRK03699 putative transporter; 99.5 1.1E-12 2.4E-17 102.5 15.1 162 6-180 215-378 (394)
123 PRK08633 2-acyl-glycerophospho 99.5 1.8E-12 3.8E-17 113.7 17.8 130 19-157 33-165 (1146)
124 TIGR00903 2A0129 major facilit 99.5 2.3E-12 5E-17 99.9 16.3 164 3-184 199-366 (368)
125 TIGR00882 2A0105 oligosacchari 99.5 1.4E-12 3E-17 102.0 15.2 174 4-185 10-186 (396)
126 KOG0254|consensus 99.5 1.7E-12 3.8E-17 104.8 16.0 140 33-186 92-233 (513)
127 TIGR01301 GPH_sucrose GPH fami 99.5 3.3E-12 7.2E-17 101.3 17.0 174 12-186 20-222 (477)
128 TIGR00883 2A0106 metabolite-pr 99.5 1.7E-12 3.7E-17 100.8 15.1 152 9-168 232-387 (394)
129 KOG0569|consensus 99.5 6E-12 1.3E-16 99.2 18.0 143 34-186 64-208 (485)
130 TIGR00891 2A0112 putative sial 99.5 3.4E-12 7.3E-17 99.7 16.0 139 15-164 257-398 (405)
131 PF11700 ATG22: Vacuole efflux 99.5 6.8E-12 1.5E-16 99.9 17.5 180 3-189 288-474 (477)
132 PRK11010 ampG muropeptide tran 99.5 5.4E-12 1.2E-16 101.4 16.9 162 15-185 241-405 (491)
133 PRK10504 putative transporter; 99.5 9.6E-12 2.1E-16 99.4 17.4 143 9-160 274-418 (471)
134 PRK09874 drug efflux system pr 99.5 8E-12 1.7E-16 98.0 16.6 157 15-183 238-399 (408)
135 TIGR00892 2A0113 monocarboxyla 99.4 1.5E-12 3.3E-17 103.6 12.3 155 11-177 256-416 (455)
136 PF05977 MFS_3: Transmembrane 99.4 1E-11 2.3E-16 99.8 17.0 141 33-180 48-188 (524)
137 PRK15034 nitrate/nitrite trans 99.4 1.6E-11 3.4E-16 97.0 17.2 173 3-182 259-454 (462)
138 TIGR00792 gph sugar (Glycoside 99.4 7.8E-12 1.7E-16 98.9 15.4 168 13-186 16-198 (437)
139 PRK06814 acylglycerophosphoeth 99.4 1.3E-11 2.8E-16 108.3 17.7 141 33-185 55-197 (1140)
140 TIGR00902 2A0127 phenyl propri 99.4 3.4E-11 7.4E-16 93.8 18.0 156 8-177 217-374 (382)
141 KOG3764|consensus 99.4 7.2E-13 1.6E-17 100.3 8.0 144 33-188 109-253 (464)
142 TIGR00792 gph sugar (Glycoside 99.4 1.6E-11 3.4E-16 97.2 15.9 117 33-160 260-383 (437)
143 COG2814 AraJ Arabinose efflux 99.4 8.1E-11 1.8E-15 90.4 18.2 164 3-181 218-385 (394)
144 KOG2533|consensus 99.4 6.8E-12 1.5E-16 99.8 12.4 150 26-187 76-232 (495)
145 COG2223 NarK Nitrate/nitrite t 99.4 1.3E-11 2.7E-16 94.3 13.3 173 3-181 225-400 (417)
146 PLN00028 nitrate transmembrane 99.4 7.8E-12 1.7E-16 100.1 12.0 154 13-180 269-431 (476)
147 KOG2504|consensus 99.4 3.3E-11 7.1E-16 96.6 14.9 156 15-183 65-222 (509)
148 PRK10091 MFS transport protein 99.4 9.6E-11 2.1E-15 91.3 17.1 153 16-180 219-374 (382)
149 TIGR02718 sider_RhtX_FptX side 99.4 1.4E-10 3.1E-15 90.6 17.5 159 12-176 224-385 (390)
150 TIGR00895 2A0115 benzoate tran 99.4 5.2E-11 1.1E-15 92.7 15.0 136 7-154 261-397 (398)
151 TIGR00900 2A0121 H+ Antiporter 99.4 8.7E-11 1.9E-15 90.4 16.1 132 17-159 232-365 (365)
152 TIGR00881 2A0104 phosphoglycer 99.3 2.7E-11 5.8E-16 93.7 12.6 147 8-163 228-378 (379)
153 COG2270 Permeases of the major 99.3 8.5E-11 1.9E-15 90.0 14.0 172 3-187 259-433 (438)
154 PF03825 Nuc_H_symport: Nucleo 99.3 6.6E-10 1.4E-14 86.9 18.5 166 9-185 220-398 (400)
155 PF06813 Nodulin-like: Nodulin 99.3 1.1E-10 2.3E-15 85.0 13.1 139 11-157 17-157 (250)
156 TIGR00894 2A0114euk Na(+)-depe 99.3 1.1E-10 2.3E-15 93.4 14.2 168 3-180 268-448 (465)
157 PF05977 MFS_3: Transmembrane 99.3 7E-10 1.5E-14 89.4 17.8 154 14-179 236-391 (524)
158 TIGR00711 efflux_EmrB drug res 99.3 2.9E-10 6.2E-15 91.2 15.3 143 8-158 267-411 (485)
159 PRK15402 multidrug efflux syst 99.3 7.8E-10 1.7E-14 86.9 17.4 153 14-174 233-387 (406)
160 PRK10473 multidrug efflux syst 99.3 4.7E-10 1E-14 87.7 15.8 139 14-169 221-361 (392)
161 TIGR00882 2A0105 oligosacchari 99.3 5.5E-10 1.2E-14 87.5 15.9 152 17-180 236-393 (396)
162 PRK11128 putative 3-phenylprop 99.2 1.6E-09 3.5E-14 84.5 18.0 150 12-175 221-372 (382)
163 PRK11902 ampG muropeptide tran 99.2 8.5E-10 1.9E-14 86.6 16.6 151 19-180 233-388 (402)
164 PRK14995 methyl viologen resis 99.2 2.6E-09 5.6E-14 86.2 19.5 139 9-156 272-412 (495)
165 TIGR00896 CynX cyanate transpo 99.2 8.3E-10 1.8E-14 85.2 16.0 138 9-159 210-350 (355)
166 PF00083 Sugar_tr: Sugar (and 99.2 2E-14 4.4E-19 114.1 -9.9 143 33-185 49-194 (451)
167 PRK09848 glucuronide transport 99.2 7.2E-10 1.6E-14 88.2 15.6 142 9-160 241-391 (448)
168 PRK09669 putative symporter Ya 99.2 1E-09 2.2E-14 87.2 16.2 166 14-185 27-207 (444)
169 KOG0252|consensus 99.2 1.9E-10 4.1E-15 88.9 11.0 104 33-141 87-190 (538)
170 TIGR01272 gluP glucose/galacto 99.2 2.5E-09 5.4E-14 81.1 17.0 140 11-165 155-298 (310)
171 KOG4686|consensus 99.2 2.4E-10 5.2E-15 83.5 10.4 163 5-180 273-441 (459)
172 PRK08633 2-acyl-glycerophospho 99.2 1.3E-09 2.9E-14 95.8 17.2 150 13-174 249-402 (1146)
173 TIGR00710 efflux_Bcr_CflA drug 99.2 2.9E-09 6.4E-14 82.7 16.8 141 11-160 221-364 (385)
174 TIGR00889 2A0110 nucleoside tr 99.2 2.1E-09 4.6E-14 84.9 15.5 164 3-186 9-183 (418)
175 PRK11043 putative transporter; 99.2 4.5E-09 9.8E-14 82.4 17.2 138 13-158 220-358 (401)
176 KOG2504|consensus 99.2 1.4E-10 3E-15 93.1 8.3 164 4-180 306-474 (509)
177 PRK10429 melibiose:sodium symp 99.2 1.9E-09 4.1E-14 86.4 14.7 167 13-185 23-204 (473)
178 PRK10213 nepI ribonucleoside t 99.1 1.2E-08 2.7E-13 79.9 18.6 155 9-176 229-385 (394)
179 PRK10054 putative transporter; 99.1 2.1E-09 4.5E-14 84.3 14.0 135 34-180 248-382 (395)
180 TIGR00788 fbt folate/biopterin 99.1 1.7E-09 3.8E-14 86.5 13.6 167 5-186 35-212 (468)
181 KOG0255|consensus 99.1 1.8E-08 3.9E-13 81.8 19.6 156 28-193 348-503 (521)
182 PRK11102 bicyclomycin/multidru 99.1 7.2E-09 1.6E-13 80.5 16.7 133 9-150 207-342 (377)
183 PRK11646 multidrug resistance 99.1 5.9E-09 1.3E-13 81.9 16.3 150 16-177 228-383 (400)
184 PRK09669 putative symporter Ya 99.1 6E-09 1.3E-13 82.9 16.1 118 33-160 267-391 (444)
185 COG3104 PTR2 Dipeptide/tripept 99.1 7.4E-10 1.6E-14 86.6 10.3 144 27-180 57-204 (498)
186 COG0738 FucP Fucose permease [ 99.1 8.9E-09 1.9E-13 78.7 15.7 163 13-185 30-214 (422)
187 PRK10429 melibiose:sodium symp 99.1 3.9E-09 8.4E-14 84.7 14.6 141 13-160 248-396 (473)
188 PF13347 MFS_2: MFS/sugar tran 99.1 6.4E-10 1.4E-14 88.0 9.8 165 15-184 20-200 (428)
189 PF01306 LacY_symp: LacY proto 99.1 3.5E-09 7.7E-14 82.2 13.2 143 33-187 262-405 (412)
190 PRK10133 L-fucose transporter; 99.1 1.6E-08 3.4E-13 80.4 16.9 150 10-174 272-425 (438)
191 COG2211 MelB Na+/melibiose sym 99.1 2.7E-08 5.9E-13 78.3 17.3 146 4-159 244-398 (467)
192 PRK11462 putative transporter; 99.1 3.1E-08 6.7E-13 79.2 17.6 166 14-185 27-207 (460)
193 TIGR00901 2A0125 AmpG-related 99.0 2.7E-09 5.9E-14 82.3 11.0 131 9-141 222-355 (356)
194 KOG0253|consensus 99.0 6.8E-09 1.5E-13 78.6 12.4 145 26-185 108-253 (528)
195 PRK11195 lysophospholipid tran 99.0 3.6E-08 7.7E-13 77.3 17.2 152 15-180 224-378 (393)
196 PF05631 DUF791: Protein of un 99.0 7.7E-08 1.7E-12 72.8 17.6 159 18-188 56-222 (354)
197 PF13347 MFS_2: MFS/sugar tran 99.0 5E-08 1.1E-12 77.3 17.5 147 4-160 233-387 (428)
198 PRK11462 putative transporter; 99.0 4.6E-08 1E-12 78.2 17.4 118 33-160 266-390 (460)
199 KOG2532|consensus 99.0 5.2E-09 1.1E-13 83.2 11.7 167 3-181 265-446 (466)
200 PRK06814 acylglycerophosphoeth 99.0 1.6E-08 3.4E-13 89.2 15.8 161 13-174 242-414 (1140)
201 COG2807 CynX Cyanate permease 99.0 2.8E-08 6E-13 75.1 14.5 164 4-180 216-383 (395)
202 PF07690 MFS_1: Major Facilita 99.0 8.6E-09 1.9E-13 79.0 11.6 135 5-148 215-352 (352)
203 TIGR00885 fucP L-fucose:H+ sym 99.0 8.9E-08 1.9E-12 75.5 17.2 138 14-166 250-396 (410)
204 KOG2816|consensus 99.0 3.9E-08 8.5E-13 78.1 14.5 134 39-187 71-204 (463)
205 PF03825 Nuc_H_symport: Nucleo 98.9 3.9E-08 8.4E-13 77.1 13.0 76 3-78 9-86 (400)
206 TIGR00886 2A0108 nitrite extru 98.9 2.3E-08 5.1E-13 77.2 9.8 128 7-143 236-365 (366)
207 COG2807 CynX Cyanate permease 98.8 3.9E-07 8.5E-12 69.0 14.6 153 13-179 29-183 (395)
208 PRK09848 glucuronide transport 98.8 7.1E-07 1.5E-11 71.2 16.8 121 15-141 27-156 (448)
209 COG0738 FucP Fucose permease [ 98.8 3.8E-07 8.2E-12 70.0 14.3 148 13-175 253-402 (422)
210 KOG2533|consensus 98.8 4.6E-08 1E-12 78.2 9.9 152 3-165 280-439 (495)
211 TIGR00788 fbt folate/biopterin 98.8 1.3E-07 2.8E-12 75.8 12.2 133 25-159 282-415 (468)
212 COG2211 MelB Na+/melibiose sym 98.8 6.2E-07 1.3E-11 70.8 15.0 167 13-185 29-210 (467)
213 PF11700 ATG22: Vacuole efflux 98.8 7.5E-07 1.6E-11 71.4 15.5 143 34-187 74-252 (477)
214 TIGR00926 2A1704 Peptide:H+ sy 98.7 2.7E-06 5.9E-11 70.6 18.6 160 17-180 9-180 (654)
215 PF03092 BT1: BT1 family; Int 98.7 3.3E-07 7.2E-12 72.7 12.7 156 19-184 13-177 (433)
216 TIGR01301 GPH_sucrose GPH fami 98.7 2.1E-06 4.6E-11 68.7 16.8 185 2-187 264-476 (477)
217 KOG3762|consensus 98.7 1.1E-07 2.3E-12 75.3 8.7 157 11-179 386-544 (618)
218 PRK11652 emrD multidrug resist 98.7 3.2E-06 6.9E-11 66.2 17.0 138 10-157 221-360 (394)
219 PF01306 LacY_symp: LacY proto 98.7 1.3E-07 2.8E-12 73.7 8.9 167 4-183 15-189 (412)
220 KOG2325|consensus 98.6 3.1E-07 6.8E-12 72.6 10.1 151 27-185 67-232 (488)
221 PF12832 MFS_1_like: MFS_1 lik 98.6 3.1E-07 6.7E-12 54.6 7.2 65 4-68 8-73 (77)
222 PF06609 TRI12: Fungal trichot 98.6 1.5E-05 3.2E-10 65.3 18.0 134 12-155 326-465 (599)
223 PF03209 PUCC: PUCC protein; 98.5 3.9E-06 8.4E-11 64.8 12.8 139 23-162 7-156 (403)
224 TIGR00924 yjdL_sub1_fam amino 98.5 1.8E-05 3.9E-10 63.8 17.3 148 33-183 315-469 (475)
225 PRK15403 multidrug efflux syst 98.5 1.9E-05 4.2E-10 62.4 17.2 157 8-174 230-389 (413)
226 PF05978 UNC-93: Ion channel r 98.5 3.7E-05 8.1E-10 52.1 15.3 137 2-151 2-145 (156)
227 PRK10207 dipeptide/tripeptide 98.5 5.8E-06 1.3E-10 66.8 13.3 145 33-180 312-474 (489)
228 KOG2563|consensus 98.4 1.1E-05 2.4E-10 62.9 13.4 119 33-157 82-202 (480)
229 PRK09584 tppB putative tripept 98.4 1.3E-05 2.8E-10 64.9 13.7 144 33-179 319-476 (500)
230 COG0477 ProP Permeases of the 98.4 0.0001 2.3E-09 54.7 17.2 149 13-171 19-174 (338)
231 KOG2563|consensus 98.2 8.3E-06 1.8E-10 63.6 8.7 153 26-186 296-454 (480)
232 PTZ00207 hypothetical protein; 98.1 9.5E-05 2.1E-09 60.8 12.0 167 6-186 363-556 (591)
233 PF03092 BT1: BT1 family; Int 98.0 7E-05 1.5E-09 59.6 10.4 152 33-187 258-417 (433)
234 TIGR00769 AAA ADP/ATP carrier 98.0 0.002 4.4E-08 51.7 17.8 123 33-156 46-190 (472)
235 PRK15462 dipeptide/tripeptide 97.9 0.0027 5.8E-08 51.4 17.6 124 27-153 305-436 (493)
236 TIGR01272 gluP glucose/galacto 97.9 7.7E-05 1.7E-09 56.7 8.3 85 101-186 17-118 (310)
237 PF06779 DUF1228: Protein of u 97.9 0.00016 3.5E-09 43.5 7.8 70 11-80 7-77 (85)
238 PF01770 Folate_carrier: Reduc 97.8 0.0031 6.8E-08 49.5 15.8 152 19-184 27-183 (412)
239 COG2270 Permeases of the major 97.8 0.0022 4.7E-08 50.2 14.2 144 34-186 62-224 (438)
240 PF03209 PUCC: PUCC protein; 97.7 0.014 3.1E-07 45.6 17.2 140 9-157 216-363 (403)
241 KOG1330|consensus 97.5 0.00068 1.5E-08 53.5 7.8 138 13-157 261-412 (493)
242 TIGR00805 oat sodium-independe 97.4 0.013 2.8E-07 49.2 15.5 71 5-75 339-414 (633)
243 PF06963 FPN1: Ferroportin1 (F 97.4 0.017 3.6E-07 46.1 15.3 169 13-181 19-199 (432)
244 KOG3626|consensus 97.4 0.002 4.3E-08 54.0 9.7 169 16-185 117-345 (735)
245 PF03137 OATP: Organic Anion T 97.4 2.5E-05 5.4E-10 63.7 -1.4 167 14-180 21-248 (539)
246 PF00854 PTR2: POT family; In 97.3 0.0036 7.8E-08 48.9 10.3 117 61-180 2-121 (372)
247 KOG3098|consensus 97.2 0.031 6.8E-07 44.7 14.2 120 34-154 283-411 (461)
248 PF06963 FPN1: Ferroportin1 (F 97.2 0.038 8.2E-07 44.1 14.4 131 15-147 277-408 (432)
249 COG3104 PTR2 Dipeptide/tripept 97.2 0.049 1.1E-06 43.8 14.8 165 14-180 306-485 (498)
250 KOG3098|consensus 97.1 0.04 8.7E-07 44.2 13.9 134 4-150 17-157 (461)
251 KOG3764|consensus 97.1 0.0019 4.1E-08 50.2 6.0 139 33-180 309-452 (464)
252 KOG3762|consensus 96.9 0.0018 3.8E-08 52.2 5.2 70 10-79 25-96 (618)
253 KOG0637|consensus 96.9 0.00074 1.6E-08 53.2 2.5 140 12-152 48-200 (498)
254 KOG3626|consensus 96.8 0.11 2.4E-06 44.0 14.9 70 3-72 399-473 (735)
255 KOG2816|consensus 96.8 0.029 6.4E-07 45.2 10.9 119 26-157 272-392 (463)
256 KOG3574|consensus 96.7 0.034 7.4E-07 43.3 10.2 143 5-151 40-189 (510)
257 PF03219 TLC: TLC ATP/ADP tran 96.7 0.12 2.5E-06 42.1 13.7 115 42-156 71-205 (491)
258 KOG1237|consensus 96.6 0.13 2.8E-06 42.7 13.5 163 16-178 58-241 (571)
259 PF13000 Acatn: Acetyl-coenzym 96.5 0.051 1.1E-06 43.8 10.0 40 115-154 138-177 (544)
260 KOG2615|consensus 96.3 0.042 9.1E-07 42.8 8.6 121 24-156 290-413 (451)
261 KOG4686|consensus 96.1 0.00074 1.6E-08 50.3 -1.7 117 33-158 82-199 (459)
262 KOG4332|consensus 95.7 0.044 9.5E-07 40.9 6.1 51 24-74 65-116 (454)
263 PF02487 CLN3: CLN3 protein; 95.4 0.19 4.2E-06 39.7 9.0 131 35-183 64-196 (402)
264 PF03137 OATP: Organic Anion T 95.2 0.005 1.1E-07 50.5 0.0 154 4-158 313-515 (539)
265 PRK03612 spermidine synthase; 94.6 2.2 4.7E-05 35.3 15.0 47 130-176 144-191 (521)
266 COG3202 ATP/ADP translocase [E 94.1 2.7 5.9E-05 34.2 15.1 115 42-156 74-209 (509)
267 TIGR00806 rfc RFC reduced fola 91.9 1.5 3.3E-05 35.7 8.4 134 3-148 269-406 (511)
268 KOG3810|consensus 88.4 2.8 6.1E-05 32.8 6.8 103 43-158 55-157 (433)
269 PF02487 CLN3: CLN3 protein; 86.9 11 0.00023 30.1 9.5 61 95-156 336-396 (402)
270 KOG2325|consensus 86.8 0.6 1.3E-05 37.9 2.7 59 116-174 409-467 (488)
271 TIGR00939 2a57 Equilibrative N 86.3 16 0.00035 29.5 14.0 39 38-76 53-91 (437)
272 PF01770 Folate_carrier: Reduc 85.8 17 0.00036 29.2 10.8 125 3-139 254-384 (412)
273 COG5336 Uncharacterized protei 82.6 6.4 0.00014 24.8 5.2 35 39-73 51-86 (116)
274 PF13000 Acatn: Acetyl-coenzym 81.4 28 0.0006 28.9 9.7 40 118-157 428-467 (544)
275 TIGR00880 2_A_01_02 Multidrug 80.3 12 0.00027 23.7 7.5 34 34-67 91-124 (141)
276 PF11947 DUF3464: Protein of u 80.1 6.3 0.00014 26.7 5.0 31 114-144 113-143 (153)
277 PF10183 ESSS: ESSS subunit of 73.4 9.5 0.00021 24.1 4.2 37 153-189 52-88 (105)
278 COG5336 Uncharacterized protei 73.1 13 0.00028 23.5 4.6 53 124-176 35-89 (116)
279 PF12670 DUF3792: Protein of u 68.9 28 0.0006 22.3 7.7 42 31-72 35-76 (116)
280 COG0861 TerC Membrane protein 68.6 47 0.001 24.8 9.9 48 113-160 34-81 (254)
281 KOG3574|consensus 65.7 19 0.00041 28.9 5.1 42 117-158 391-432 (510)
282 KOG3880|consensus 65.3 6.8 0.00015 30.3 2.7 129 37-184 69-201 (409)
283 TIGR00769 AAA ADP/ATP carrier 65.2 77 0.0017 26.1 17.0 55 119-173 290-345 (472)
284 KOG4830|consensus 62.7 19 0.00042 27.2 4.5 48 15-62 36-93 (412)
285 KOG4332|consensus 61.9 71 0.0015 24.5 10.9 138 33-177 285-426 (454)
286 PF02694 UPF0060: Uncharacteri 59.1 43 0.00094 21.2 5.0 45 33-77 57-101 (107)
287 PF04281 Tom22: Mitochondrial 57.8 54 0.0012 21.9 6.2 24 120-143 60-83 (137)
288 TIGR00986 3a0801s05tom22 mitoc 57.7 50 0.0011 22.2 5.4 23 120-142 58-80 (145)
289 PF07672 MFS_Mycoplasma: Mycop 55.8 16 0.00034 27.4 3.1 54 128-181 3-61 (267)
290 KOG2601|consensus 55.8 1.1E+02 0.0024 24.8 13.0 141 35-177 68-221 (503)
291 KOG3810|consensus 53.1 1.2E+02 0.0025 24.3 10.1 162 3-180 241-419 (433)
292 TIGR00939 2a57 Equilibrative N 51.0 1.3E+02 0.0029 24.4 11.6 57 93-150 371-427 (437)
293 PF13493 DUF4118: Domain of un 50.0 33 0.00071 21.2 3.6 25 36-60 81-105 (105)
294 KOG0637|consensus 49.4 43 0.00093 27.5 4.8 31 34-64 336-366 (498)
295 COG1268 BioY Uncharacterized c 48.7 55 0.0012 23.1 4.8 24 38-61 90-113 (184)
296 PF12832 MFS_1_like: MFS_1 lik 48.0 56 0.0012 19.1 5.7 35 131-165 35-69 (77)
297 COG3086 RseC Positive regulato 47.4 86 0.0019 21.1 6.5 40 26-65 67-107 (150)
298 PF07857 DUF1632: CEO family ( 47.0 60 0.0013 24.2 5.0 29 123-151 71-99 (254)
299 PF03741 TerC: Integral membra 46.9 1E+02 0.0022 21.7 8.7 40 118-157 19-58 (183)
300 PRK02237 hypothetical protein; 46.0 77 0.0017 20.2 5.0 45 33-77 59-103 (109)
301 PF07672 MFS_Mycoplasma: Mycop 45.7 1.3E+02 0.0028 22.7 7.8 25 39-63 150-175 (267)
302 KOG1479|consensus 45.5 1.6E+02 0.0035 23.8 13.3 43 14-56 36-82 (406)
303 COG2119 Predicted membrane pro 40.5 1.3E+02 0.0029 21.3 5.8 37 38-74 142-178 (190)
304 KOG4473|consensus 40.2 1E+02 0.0022 22.4 5.0 39 125-163 158-196 (247)
305 COG1972 NupC Nucleoside permea 38.9 1.8E+02 0.0039 23.3 6.5 67 119-189 153-221 (404)
306 PF03547 Mem_trans: Membrane t 38.9 1.3E+02 0.0028 23.7 6.2 18 40-57 5-22 (385)
307 TIGR03716 R_switched_YkoY inte 37.6 89 0.0019 22.7 4.6 39 118-156 16-54 (215)
308 PF03606 DcuC: C4-dicarboxylat 37.2 2.4E+02 0.0051 23.3 8.2 12 52-63 106-117 (465)
309 PF01733 Nucleoside_tran: Nucl 35.0 12 0.00025 28.6 -0.2 36 114-149 267-302 (309)
310 PF01914 MarC: MarC family int 35.0 1.7E+02 0.0037 20.9 10.7 60 114-174 22-82 (203)
311 TIGR01667 YCCS_YHJK integral m 34.7 3.2E+02 0.0069 24.0 10.3 31 50-80 43-77 (701)
312 COG2274 SunT ABC-type bacterio 33.7 3.3E+02 0.0072 24.0 12.7 25 33-57 160-184 (709)
313 PF05545 FixQ: Cbb3-type cytoc 33.6 59 0.0013 17.1 2.5 8 178-185 27-34 (49)
314 KOG2881|consensus 32.6 2.2E+02 0.0048 21.5 8.3 17 183-199 155-172 (294)
315 PRK10263 DNA translocase FtsK; 32.0 4.7E+02 0.01 25.1 9.1 22 38-59 60-81 (1355)
316 PF11298 DUF3099: Protein of u 31.5 1.1E+02 0.0025 17.9 3.9 27 54-80 11-37 (73)
317 TIGR00210 gltS sodium--glutama 31.1 1.1E+02 0.0024 24.6 4.5 43 14-56 139-181 (398)
318 TIGR02230 ATPase_gene1 F0F1-AT 31.0 1.4E+02 0.003 18.7 6.5 26 46-71 58-84 (100)
319 PF02632 BioY: BioY family; I 30.6 1.7E+02 0.0038 19.7 5.2 23 39-61 62-84 (148)
320 PF13268 DUF4059: Protein of u 30.2 1.2E+02 0.0025 17.7 4.3 22 174-195 24-45 (72)
321 PF15061 DUF4538: Domain of un 28.9 1.1E+02 0.0024 17.0 3.4 19 159-177 4-22 (58)
322 TIGR00926 2A1704 Peptide:H+ sy 26.7 4.3E+02 0.0093 23.0 8.7 33 122-154 592-624 (654)
323 KOG2601|consensus 26.6 48 0.001 26.6 1.8 34 113-146 404-437 (503)
324 PF04226 Transgly_assoc: Trans 26.0 1.1E+02 0.0024 16.1 4.6 36 142-177 6-41 (48)
325 PF03616 Glt_symporter: Sodium 26.0 1.8E+02 0.0039 23.1 4.9 37 17-54 142-179 (368)
326 PF07698 7TM-7TMR_HD: 7TM rece 25.6 2.4E+02 0.0052 19.7 5.4 30 43-72 110-139 (194)
327 COG1862 YajC Preprotein transl 24.9 80 0.0017 19.7 2.3 6 191-196 35-40 (97)
328 PF11283 DUF3084: Protein of u 24.5 1.7E+02 0.0036 17.5 3.4 16 49-64 19-34 (79)
329 PF04647 AgrB: Accessory gene 23.8 2.6E+02 0.0055 19.4 6.2 20 171-190 108-128 (185)
330 KOG1237|consensus 23.5 2.3E+02 0.005 24.1 5.4 37 122-158 485-521 (571)
331 PF15192 TMEM213: TMEM213 fami 23.2 1.5E+02 0.0032 17.4 2.9 14 151-164 45-58 (82)
332 PF01350 Flavi_NS4A: Flaviviru 22.8 93 0.002 21.0 2.4 19 168-186 102-120 (144)
333 COG4708 Predicted membrane pro 22.2 2.6E+02 0.0057 18.9 4.6 26 36-61 140-165 (169)
334 TIGR01666 YCCS hypothetical me 21.8 5.6E+02 0.012 22.6 11.4 31 50-80 43-77 (704)
335 PF14012 DUF4229: Protein of u 21.8 1.8E+02 0.0038 16.8 5.2 22 172-193 41-62 (69)
336 PF08080 zf-RNPHF: RNPHF zinc 21.6 31 0.00067 16.8 0.0 9 54-62 3-11 (36)
337 PF05297 Herpes_LMP1: Herpesvi 21.4 31 0.00068 26.1 0.0 10 177-186 180-189 (381)
338 PF14068 YuiB: Putative membra 21.4 1.2E+02 0.0025 19.1 2.4 23 38-60 75-97 (102)
339 PRK10255 PTS system N-acetyl g 20.8 5.1E+02 0.011 22.6 6.8 39 42-80 100-151 (648)
340 COG3105 Uncharacterized protei 20.6 2.3E+02 0.005 18.7 3.7 25 37-61 8-32 (138)
341 PF06898 YqfD: Putative stage 20.6 1E+02 0.0023 24.5 2.7 30 51-80 78-107 (385)
342 smart00793 AgrB Accessory gene 20.6 3.1E+02 0.0067 19.2 5.4 18 172-189 109-127 (184)
No 1
>KOG0569|consensus
Probab=99.94 E-value=4.4e-25 Score=172.37 Aligned_cols=196 Identities=32% Similarity=0.504 Sum_probs=172.1
Q ss_pred hHHHHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHh
Q psy5074 2 GLMTFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAY 80 (204)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~ 80 (204)
.+.+.+|++|.++..+|...++++.|++.+. .+.+........+.++++.++.||+|||++++.+..++.++.+.+...
T Consensus 276 ~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~ 355 (485)
T KOG0569|consen 276 VVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIA 355 (485)
T ss_pred HHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999876 889999999999999999999999999999999999999998888765
Q ss_pred heeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhch
Q psy5074 81 FVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS 160 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 160 (204)
....+... .+..+..+...+.+...++.|.+|++|.+.+|++|++.|+.+.++.....++..++....++.+.+..|.
T Consensus 356 ~~l~~~~~--~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~ 433 (485)
T KOG0569|consen 356 LFLSNSFG--SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP 433 (485)
T ss_pred HHHHHHhh--hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44433110 0122344666777888899999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhcc
Q psy5074 161 AATYGLLGLICTLGAVFVYTRVPETKNKSFEAIQAELAMG 200 (204)
Q Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~ 200 (204)
..|..+.+.+++..+..++.+||||+|+.+|+.++++++
T Consensus 434 -~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 434 -YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred -hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 788999999999999999999999999999988877655
No 2
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.89 E-value=7.1e-21 Score=151.95 Aligned_cols=192 Identities=26% Similarity=0.472 Sum_probs=147.5
Q ss_pred HHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhee
Q psy5074 5 TFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVF 83 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~ 83 (204)
.++++.+.+...+|.|.+.++.|.+.+. ........+...++.++.++++||+|||++++.+..++.++.+.+......
T Consensus 280 ~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~ 359 (479)
T PRK10077 280 VFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT 359 (479)
T ss_pred HHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc
Confidence 4556667777788899999999988765 666667788889999999999999999999999998888877776543211
Q ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHH------Hh
Q psy5074 84 KNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI------DT 157 (204)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~------~~ 157 (204)
+ ...............++...+.|..+.+++|.+|+++|+++.++.+...+++..+++.+.+.+. +.
T Consensus 360 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~ 432 (479)
T PRK10077 360 Q-------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAH 432 (479)
T ss_pred C-------cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhh
Confidence 1 1122223333344444444456777899999999999999999999999999999887776554 46
Q ss_pred hchhHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhcccCC
Q psy5074 158 VGSAATYGLLGLICTLGAVFVYTRVPETKNKSFEAIQAELAMGYTA 203 (204)
Q Consensus 158 ~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 203 (204)
.+++..|.+++++.+++.++.+++.||+|+++.||.++.+++..++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 478 (479)
T PRK10077 433 FHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPETKK 478 (479)
T ss_pred ccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhcccC
Confidence 7787888888888888877777778999999999988888776654
No 3
>KOG0254|consensus
Probab=99.87 E-value=1.2e-20 Score=151.82 Aligned_cols=199 Identities=35% Similarity=0.638 Sum_probs=164.6
Q ss_pred hHHHHHHhhChhHHHHhHHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhh
Q psy5074 2 GLMTFQRFSGVSALIYYTVDIFRNAGTRIAPSTASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYF 81 (204)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~ 81 (204)
.+..++|++|.+...+|.+++++..|.+.+....+.+......++..++..+.||+|||+.++.+...+.++.++++...
T Consensus 301 ~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~ 380 (513)
T KOG0254|consen 301 LLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVG 380 (513)
T ss_pred HHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999886556677778888889999999999999999999999999999999887655
Q ss_pred eeecCCC-CCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhch
Q psy5074 82 VFKNQGY-DMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS 160 (204)
Q Consensus 82 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 160 (204)
.....+. ......+..+...+++...++.+.+|++|.+.+|++|.+.|+++.++....+++........+..+.+..+.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~ 460 (513)
T KOG0254|consen 381 VFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGI 460 (513)
T ss_pred HHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4432211 112345667777778888889999999999999999999999999999999999988888777777776553
Q ss_pred hHHHHHHHHHHHHHHH-HHhhcccCCCCCCHHHHHHHHhcc
Q psy5074 161 AATYGLLGLICTLGAV-FVYTRVPETKNKSFEAIQAELAMG 200 (204)
Q Consensus 161 ~~~~~~~~~~~~i~~~-~~~~~~~e~~~~~~~~~~~~~~~~ 200 (204)
...|..+...+.+... ..+++.||||+++.||+++.++++
T Consensus 461 ~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~ 501 (513)
T KOG0254|consen 461 GGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEG 501 (513)
T ss_pred cchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcC
Confidence 4567777777777766 677789999999999998877665
No 4
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.83 E-value=3.8e-19 Score=142.90 Aligned_cols=176 Identities=16% Similarity=0.152 Sum_probs=124.7
Q ss_pred ChhHHHHhHHHHHHhhCCCCCh-hH------------HHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHH
Q psy5074 11 GVSALIYYTVDIFRNAGTRIAP-ST------------ASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLL 77 (204)
Q Consensus 11 ~~~~~~~~~~~~~~~~g~~~~~-~~------------~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~ 77 (204)
..+....|.|.++++.|++.+. .. ...+..++.+++.++.++++||+|||+.++++..++.++..++
T Consensus 303 ~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l 382 (502)
T TIGR00887 303 AFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVL 382 (502)
T ss_pred HHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Confidence 4455667789999888886532 11 2333445566788899999999999999988887777776665
Q ss_pred HHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHh
Q psy5074 78 VAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT 157 (204)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (204)
....... ...............++.+..+..+.+.+|.+|++.|+++.++.+..++++++++|.+.+.+.+.
T Consensus 383 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 454 (502)
T TIGR00887 383 GFAYNHL--------STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH 454 (502)
T ss_pred HHHHHhc--------chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcc
Confidence 5432110 11111222222233344556677888999999999999999999999999999999999998874
Q ss_pred ----------hchhHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHH
Q psy5074 158 ----------VGSAATYGLLGLICTLGAVFVYTRVPETKNKSFEAIQA 195 (204)
Q Consensus 158 ----------~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~ 195 (204)
.++...+.+++++.+++.+.. +++||||++++||+++
T Consensus 455 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 455 GDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELSG 501 (502)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHh-eEeccCCCCCHHhhhC
Confidence 234456777877777766544 5679999999887654
No 5
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.83 E-value=1.7e-18 Score=135.89 Aligned_cols=172 Identities=10% Similarity=0.034 Sum_probs=134.7
Q ss_pred HHHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhe
Q psy5074 4 MTFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFV 82 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~ 82 (204)
.++.+...-....+..|.+.+++|.+.++ ++......++..+++++.|+++||+|||+.+..+.++..++.....+..
T Consensus 16 ~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~- 94 (412)
T TIGR02332 16 LFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT- 94 (412)
T ss_pred HHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc-
Confidence 44455555566777788888889999877 8888999999999999999999999999999999999988888877652
Q ss_pred eecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH------
Q psy5074 83 FKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID------ 156 (204)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~------ 156 (204)
+.+.......+.+.+.+ ...+....++.|++|+++|+++.++.+....+|..+++.+.+++.+
T Consensus 95 ----------~~~~l~~~r~l~G~~~~-~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (412)
T TIGR02332 95 ----------GPESLYLLRILVGIAEA-GFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA 163 (412)
T ss_pred ----------CHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 23333333334444433 3345666788999999999999999999999999999999888764
Q ss_pred hhchhHHHHHHHHHHHHHHHHHhhcccCCCC
Q psy5074 157 TVGSAATYGLLGLICTLGAVFVYTRVPETKN 187 (204)
Q Consensus 157 ~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~ 187 (204)
..|||+.|.+.++..++..++.++++||+++
T Consensus 164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 3689999998888877776666666788763
No 6
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.83 E-value=5.6e-19 Score=136.99 Aligned_cols=169 Identities=12% Similarity=-0.007 Sum_probs=134.8
Q ss_pred HHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheee
Q psy5074 6 FQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFK 84 (204)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~ 84 (204)
+.++..........|.+.+++|.+..+ .+......++..++.++.|+++||+|||+.+..+..+..++........
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--- 80 (399)
T TIGR00893 4 VINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG--- 80 (399)
T ss_pred hHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc---
Confidence 345555567778888988889998876 8889999999999999999999999999999999888888887776652
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHH
Q psy5074 85 NQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATY 164 (204)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 164 (204)
+.+.......+.+.+.+. ..+....+..|.+|+++|+++.++.+....++..+++.+.+.+.+..+|++.+
T Consensus 81 --------~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 151 (399)
T TIGR00893 81 --------AYVSLYILRVLLGAAEAP-FFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAF 151 (399)
T ss_pred --------CHHHHHHHHHHHHHHHHh-hhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHH
Confidence 233334444444444333 44566789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCC
Q psy5074 165 GLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 165 ~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
.+.+...++..+..++..||++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 152 IIEGVLGIIWGVLWLKFIPDPP 173 (399)
T ss_pred HHHHHHHHHHHHHhhheecCCC
Confidence 8888877777666666566654
No 7
>PRK03545 putative arabinose transporter; Provisional
Probab=99.82 E-value=2.9e-18 Score=133.71 Aligned_cols=160 Identities=17% Similarity=0.042 Sum_probs=125.1
Q ss_pred HHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCc
Q psy5074 15 LIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDY 93 (204)
Q Consensus 15 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (204)
.....|.+.+++|.+.++ ++......++..+++++.|.++||+|||+++..+.....++....... ++
T Consensus 28 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~ 96 (390)
T PRK03545 28 PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA-----------WN 96 (390)
T ss_pred HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-----------cc
Confidence 334578888899998877 788888888889999999999999999999999998888888777665 22
Q ss_pred cHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHH
Q psy5074 94 SWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTL 173 (204)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i 173 (204)
.+..++.....+...+ ...+....+..|.+|+++|+++.++......++..++|.+.+.+.+..||++.|.+.+.+.++
T Consensus 97 ~~~l~~~r~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l 175 (390)
T PRK03545 97 FTVLLISRIGIAFAHA-IFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALI 175 (390)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHH
Confidence 3333333333322222 233455678899999999999999999999999999999999998989999999998888777
Q ss_pred HHHHHhhcccCCC
Q psy5074 174 GAVFVYTRVPETK 186 (204)
Q Consensus 174 ~~~~~~~~~~e~~ 186 (204)
..+..+...||.+
T Consensus 176 ~~~~~~~~~~~~~ 188 (390)
T PRK03545 176 TLLLLIKLLPLLP 188 (390)
T ss_pred HHHHHHHhCCCCC
Confidence 7666555566643
No 8
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.81 E-value=4e-18 Score=135.44 Aligned_cols=186 Identities=33% Similarity=0.627 Sum_probs=141.3
Q ss_pred HHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhee
Q psy5074 5 TFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVF 83 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~ 83 (204)
.+.+..+.+....+.|.+.++.|.+.+. ........++.+++.++.++++||+|||+.+..+..+..++..........
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (481)
T TIGR00879 293 WFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGAS 372 (481)
T ss_pred HHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555566778889999999988765 677778888899999999999999999999988877777776666532111
Q ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHH
Q psy5074 84 KNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAAT 163 (204)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 163 (204)
.....+ ....+..+....+...+++.+..+....+..|.+|++.|+++.++.+...++++.+++.+.+.+.+..+|+..
T Consensus 373 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~ 451 (481)
T TIGR00879 373 FVTGSS-KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGV 451 (481)
T ss_pred ccCCcc-cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccce
Confidence 110000 0013333444445555566666677778889999999999999999999999999999999999998899888
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCHH
Q psy5074 164 YGLLGLICTLGAVFVYTRVPETKNKSFE 191 (204)
Q Consensus 164 ~~~~~~~~~i~~~~~~~~~~e~~~~~~~ 191 (204)
|++.++++++..+..+++.||+|+++.+
T Consensus 452 f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 452 FIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred ehhHHHHHHHHHHHHheecccCCCCChh
Confidence 8888888888888877778998876654
No 9
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.81 E-value=3.3e-18 Score=135.20 Aligned_cols=168 Identities=11% Similarity=0.028 Sum_probs=129.5
Q ss_pred HHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheee
Q psy5074 6 FQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFK 84 (204)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~ 84 (204)
+..+........+.|.+.+++|.+.++ ++......++..+++++.|+++||+|||+.+.++.....++.+......
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--- 109 (434)
T PRK11663 33 ALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS--- 109 (434)
T ss_pred HHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh---
Confidence 333344445677899999999998766 7888889999999999999999999999999999999888887776541
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHH
Q psy5074 85 NQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATY 164 (204)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 164 (204)
+.+.......+.+.+.+.. .+....+++|.+|+++|+++.++.+....++..+++.+.+.+.+..||++.|
T Consensus 110 --------~~~~l~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f 180 (434)
T PRK11663 110 --------SLWAFALLWVLNAFFQGWG-WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGM 180 (434)
T ss_pred --------HHHHHHHHHHHHHHHHHcc-chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 2233333333333344433 3456678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCC
Q psy5074 165 GLLGLICTLGAVFVYTRVPET 185 (204)
Q Consensus 165 ~~~~~~~~i~~~~~~~~~~e~ 185 (204)
.+.+++.++..+...+++||+
T Consensus 181 ~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 181 MIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 888777665555444445654
No 10
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.81 E-value=4.3e-18 Score=132.80 Aligned_cols=173 Identities=12% Similarity=0.011 Sum_probs=133.4
Q ss_pred HHHHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhh
Q psy5074 3 LMTFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYF 81 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~ 81 (204)
...+++..+........|.+.+++|.+.++ .+......++..++.++.|+++||+|||+.++.+.....++.......
T Consensus 10 ~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~- 88 (392)
T PRK10473 10 ALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA- 88 (392)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh-
Confidence 455666677777778899999999998766 778888888899999999999999999999999888888877776654
Q ss_pred eeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchh
Q psy5074 82 VFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSA 161 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 161 (204)
++.+.......+.+.+.+. ..+....+..|.+|+++|+++.++.+....++..++|.+.+.+.+..+|+
T Consensus 89 ----------~~~~~~~~~~~l~g~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~ 157 (392)
T PRK10473 89 ----------ETSSLFLAGRFLQGIGAGC-CYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQ 157 (392)
T ss_pred ----------CcHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChH
Confidence 1222333333333332222 23456678899999999999999999999999999999988888888999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCC
Q psy5074 162 ATYGLLGLICTLGAVFVYTRVPETKN 187 (204)
Q Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~e~~~ 187 (204)
+.+.+.+...++..+..++..||++.
T Consensus 158 ~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 158 SLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99988888877777766666777643
No 11
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.80 E-value=3.6e-18 Score=132.56 Aligned_cols=167 Identities=18% Similarity=0.038 Sum_probs=129.5
Q ss_pred hhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCC
Q psy5074 9 FSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQG 87 (204)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (204)
..+........|.+.+++|.+.++ .+......++..++.++.|+++||+|||+.+..+.....++........
T Consensus 18 ~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~------ 91 (385)
T TIGR00710 18 PLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN------ 91 (385)
T ss_pred HHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc------
Confidence 344455556678888889998876 8888889999999999999999999999999999888888877766541
Q ss_pred CCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHH
Q psy5074 88 YDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLL 167 (204)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~ 167 (204)
..+.......+.+.+.+. ..+....+..|.+|+++|+++.++.+....++..+++.+.+.+.+..+|+..+.+.
T Consensus 92 -----~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 165 (385)
T TIGR00710 92 -----NIETLLVLRFVQAFGASA-GSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL 165 (385)
T ss_pred -----cHHHHHHHHHHHHcchhH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 223333333333333222 23455678999999999999999999999999999999999999989999999888
Q ss_pred HHHHHHHHHHHhhcccCCCC
Q psy5074 168 GLICTLGAVFVYTRVPETKN 187 (204)
Q Consensus 168 ~~~~~i~~~~~~~~~~e~~~ 187 (204)
+...++..+..++..||++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 166 SLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHHHHHHHHHhCCCCCC
Confidence 88777776666666777643
No 12
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.80 E-value=7.7e-18 Score=131.54 Aligned_cols=160 Identities=10% Similarity=0.119 Sum_probs=125.3
Q ss_pred HHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCc
Q psy5074 15 LIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDY 93 (204)
Q Consensus 15 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (204)
.....|.+.+++|.+.++ ++......+...+++++.|.++||+|||+.++.+..+..++.+..... ++
T Consensus 39 ~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----------~~ 107 (394)
T PRK10213 39 PVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA-----------NS 107 (394)
T ss_pred HHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH-----------Ch
Confidence 334577888889998876 777788888999999999999999999999999999998887776654 12
Q ss_pred cHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHH
Q psy5074 94 SWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTL 173 (204)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i 173 (204)
.+..+....+.+.+.+. ..+....++.|.+|+|+|+++.++......++..++|.+.+.+.+..||++.|.+.+.+.++
T Consensus 108 ~~~l~~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~ 186 (394)
T PRK10213 108 FSLLLIGRACLGLALGG-FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVL 186 (394)
T ss_pred HHHHHHHHHHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 33334433444444333 34566778899999999999999999999999999999999999999999999888777666
Q ss_pred HHHHHhhcccCCC
Q psy5074 174 GAVFVYTRVPETK 186 (204)
Q Consensus 174 ~~~~~~~~~~e~~ 186 (204)
..+......||++
T Consensus 187 ~~l~~~~~~p~~~ 199 (394)
T PRK10213 187 CIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHHHHCCCCC
Confidence 5555444467754
No 13
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.80 E-value=4.4e-18 Score=136.54 Aligned_cols=172 Identities=12% Similarity=-0.035 Sum_probs=133.9
Q ss_pred HHHHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhh
Q psy5074 3 LMTFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYF 81 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~ 81 (204)
+..+........+..-.|.+.+++|.+.++ .+....+.++.....++.|+++||+|||+.++.+..+..++.+.....
T Consensus 13 ~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a- 91 (495)
T PRK14995 13 LVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS- 91 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc-
Confidence 345555566667788899999999998766 888888999999999999999999999999999999999988887765
Q ss_pred eeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccc-cchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhch
Q psy5074 82 VFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEI-IPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS 160 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 160 (204)
++.+..+....+.+.+.+. ..+.......+. .|+++|+++.++......++..++|.+.+.+.+..+|
T Consensus 92 ----------~~~~~li~~r~l~G~g~~~-~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gw 160 (495)
T PRK14995 92 ----------PTASWLIATRALLAIGAAM-IVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYW 160 (495)
T ss_pred ----------CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Confidence 2334444444444444332 333333445455 4789999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 161 AATYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
|+.|++...+.++..+...+..||.+
T Consensus 161 r~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 161 GSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999887777777666666677754
No 14
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.80 E-value=8.5e-18 Score=128.32 Aligned_cols=167 Identities=16% Similarity=0.047 Sum_probs=143.1
Q ss_pred HHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhee
Q psy5074 5 TFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVF 83 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~ 83 (204)
.|...+.-+.....+|++.+|+|.+... ++..+.+..+..+++++...+.||+.||++++....++.++.++.++..
T Consensus 22 ~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp-- 99 (394)
T COG2814 22 AFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAP-- 99 (394)
T ss_pred HHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhc--
Confidence 3444445566777899999999999877 8999999999999999999999999999999999999999999988873
Q ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHH
Q psy5074 84 KNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAAT 163 (204)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 163 (204)
+-+.......+.+...+.. .++...+..++.|+++|++++++......++..++.++..++-+.+|||.+
T Consensus 100 ---------~f~~Ll~aR~~~g~a~G~f-~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~ 169 (394)
T COG2814 100 ---------SFAVLLLARALAGLAHGVF-WSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRAT 169 (394)
T ss_pred ---------cHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHH
Confidence 3334444445555555543 457778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q psy5074 164 YGLLGLICTLGAVFVYTRVP 183 (204)
Q Consensus 164 ~~~~~~~~~i~~~~~~~~~~ 183 (204)
|...+.+.++..+..+..+|
T Consensus 170 F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 170 FLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 99999999999998888888
No 15
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.80 E-value=1.4e-18 Score=138.87 Aligned_cols=171 Identities=15% Similarity=0.036 Sum_probs=134.5
Q ss_pred HHHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhe
Q psy5074 4 MTFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFV 82 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~ 82 (204)
..+.............|.+.+++|.+.++ .+......++..++.++.|+++||+|||+.++.+..+..++.......
T Consensus 10 ~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-- 87 (485)
T TIGR00711 10 GTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA-- 87 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc--
Confidence 34445555567778899999999998776 888899999999999999999999999999999999888888777654
Q ss_pred eecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhH
Q psy5074 83 FKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAA 162 (204)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 162 (204)
++.+..+....+.+.+.+ ...+....++.|.+|+++|+++.++......++..++|.+.+++.+..+|++
T Consensus 88 ---------~~~~~l~~~~~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~ 157 (485)
T TIGR00711 88 ---------PNLELMIIFRVIQGFGGG-PLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRW 157 (485)
T ss_pred ---------CCHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCcee
Confidence 122333333333333322 3445667889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 163 TYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 163 ~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
.|++.+.+.++..+...+..||++
T Consensus 158 ~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 158 IFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred hhhhhhHHHHHHHHHHHHHcCCcc
Confidence 998887777776666666567654
No 16
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.80 E-value=7.5e-18 Score=130.28 Aligned_cols=162 Identities=14% Similarity=0.008 Sum_probs=120.1
Q ss_pred hhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCC
Q psy5074 12 VSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDM 90 (204)
Q Consensus 12 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (204)
-..+....|.+.+++|.+.++ ++......++..+++++.|+++||+|||++++........+. ......
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~-~~~~~~--------- 76 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAA-GRLLDP--------- 76 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-HHHHHh---------
Confidence 345677889999999999877 788888899999999999999999999987665444333332 211110
Q ss_pred CCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHH
Q psy5074 91 QDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLI 170 (204)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~ 170 (204)
.+.+..+....+.+.+.+. .+......+|.+|+|+|+++.++.+....+|..+++.+.+.+.+..|||..|.+.+.+
T Consensus 77 -~~~~~l~~~R~l~G~g~~~--~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l 153 (368)
T TIGR00903 77 -FNYEWLLACQLLAALGQPF--LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAV 153 (368)
T ss_pred -ccHHHHHHHHHHHHhHhHH--HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 1122333333333333332 2334456689999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHhhcccCCC
Q psy5074 171 CTLGAVFVYTRVPETK 186 (204)
Q Consensus 171 ~~i~~~~~~~~~~e~~ 186 (204)
.++..+..++.+||++
T Consensus 154 ~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 154 AAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8887777777788864
No 17
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.80 E-value=7.2e-18 Score=131.19 Aligned_cols=167 Identities=10% Similarity=-0.005 Sum_probs=130.3
Q ss_pred hhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCC
Q psy5074 9 FSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQG 87 (204)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (204)
..+........|.+.+++|.+.++ ++......++..+++++.|+++||+|||+++..+..+..++.+.....
T Consensus 16 ~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~------- 88 (382)
T PRK10091 16 GMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS------- 88 (382)
T ss_pred HhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh-------
Confidence 334456667888998999998776 888999999999999999999999999999999999998888877665
Q ss_pred CCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHH
Q psy5074 88 YDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLL 167 (204)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~ 167 (204)
++.+.......+.+.+.+. ..+....+..|++|+++|+++.++......++..+++.+.+.+.+..+||+.|.+.
T Consensus 89 ----~~~~~l~~~r~l~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~ 163 (382)
T PRK10091 89 ----SSYLMLAIGRLVSGFPHGA-FFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLI 163 (382)
T ss_pred ----CcHHHHHHHHHHHHhhhHH-HHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHH
Confidence 2333334433333333332 23344567889999999999999999888999999999999988889999999988
Q ss_pred HHHHHHHHHHHhhcccCCCC
Q psy5074 168 GLICTLGAVFVYTRVPETKN 187 (204)
Q Consensus 168 ~~~~~i~~~~~~~~~~e~~~ 187 (204)
+....+..+..++..||.++
T Consensus 164 ~~~~~~~~~~~~~~lp~~~~ 183 (382)
T PRK10091 164 AVFNIAVLASIYFWVPDIRD 183 (382)
T ss_pred HHHHHHHHHHHHHhCCCCCc
Confidence 88777766666666787543
No 18
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.79 E-value=1.2e-17 Score=131.18 Aligned_cols=161 Identities=12% Similarity=0.110 Sum_probs=123.5
Q ss_pred HHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCc
Q psy5074 15 LIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDY 93 (204)
Q Consensus 15 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (204)
...-+|.+.+++|.+.+. .+...+..++..+++++.|+++||+|||++++.+..+..++.+..... ++
T Consensus 35 ~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----------~~ 103 (413)
T PRK15403 35 IQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-----------TS 103 (413)
T ss_pred hccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-----------CC
Confidence 334445666778888766 777888889999999999999999999999999988888887777654 22
Q ss_pred cHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHH
Q psy5074 94 SWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTL 173 (204)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i 173 (204)
.+..++...+.+.+.+. ..+....+..|.+|+++|+++.++.+....++..++|.+.+.+.+..||++.|++.++..++
T Consensus 104 ~~~l~~~r~l~Gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i 182 (413)
T PRK15403 104 MTQFLIARFIQGTSICF-IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLI 182 (413)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 23333333333333222 23455678899999999999999999999999999999999988888999999988888777
Q ss_pred HHHHHhhcccCCCC
Q psy5074 174 GAVFVYTRVPETKN 187 (204)
Q Consensus 174 ~~~~~~~~~~e~~~ 187 (204)
..+..++..||++.
T Consensus 183 ~~~~~~~~lp~~~~ 196 (413)
T PRK15403 183 AFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHhCCCCcc
Confidence 76665556788653
No 19
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.79 E-value=1.3e-17 Score=128.38 Aligned_cols=170 Identities=13% Similarity=0.065 Sum_probs=127.3
Q ss_pred HHHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhe
Q psy5074 4 MTFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFV 82 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~ 82 (204)
..+....+........|.+..+.+.+..+ ++......++..+++++.|+++||+|||+.++.+..+..++.........
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 86 (365)
T TIGR00900 7 AQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVAL 86 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566777788888888887766 88888899999999999999999999999999988887777766655432
Q ss_pred eecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhH
Q psy5074 83 FKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAA 162 (204)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 162 (204)
.+. .+.+.......+.+.+.+. ..+...++..|++|+++|+++.++.+....++..++|.+.+.+.+..+|++
T Consensus 87 ~~~------~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~ 159 (365)
T TIGR00900 87 LGG------LNIWQVYVLAGILAIAQAF-FTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKW 159 (365)
T ss_pred cCC------CcHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 110 1223333333333333333 345667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy5074 163 TYGLLGLICTLGAVFVYT 180 (204)
Q Consensus 163 ~~~~~~~~~~i~~~~~~~ 180 (204)
.+.+.++..++..+..+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~ 177 (365)
T TIGR00900 160 AIWVDAVGFAISALLIVS 177 (365)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 888776666555444433
No 20
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.79 E-value=3.1e-17 Score=128.03 Aligned_cols=170 Identities=14% Similarity=0.020 Sum_probs=127.3
Q ss_pred HHHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhe
Q psy5074 4 MTFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFV 82 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~ 82 (204)
..+.............|.+.+++|.+..+ .+......++..++.++.|+++||+|||+.++.+....+++.+......
T Consensus 20 ~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~- 98 (405)
T TIGR00891 20 GWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAP- 98 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc-
Confidence 34455555566777888888889998876 8888889999999999999999999999999999888888877766541
Q ss_pred eecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc--h
Q psy5074 83 FKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG--S 160 (204)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g--~ 160 (204)
+.+..+....+.+.+.+ ...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..+ |
T Consensus 99 ----------~~~~l~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w 167 (405)
T TIGR00891 99 ----------GYITMFIARLVIGIGMG-GEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGW 167 (405)
T ss_pred ----------cHHHHHHHHHHHHhhhh-hhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence 22333333333333333 3345566789999999999999999999999999999999998887766 9
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 161 AATYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
++.+.+.+...++.. ......||++
T Consensus 168 ~~~f~~~~~~~~~~~-~~~~~~~~~~ 192 (405)
T TIGR00891 168 RALFFISILPIIFAL-WLRKNIPEAE 192 (405)
T ss_pred HHHHHHHHHHHHHHH-HHHHhCCCCh
Confidence 988876554444433 3334467754
No 21
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.79 E-value=1.8e-18 Score=132.51 Aligned_cols=170 Identities=18% Similarity=0.114 Sum_probs=130.9
Q ss_pred HHHHHHhhChhHHHHhHH-HHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHh
Q psy5074 3 LMTFQRFSGVSALIYYTV-DIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAY 80 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~ 80 (204)
+..+....+........| .+.+++|.+.++ ++......++..++.++.|+++||+|||+.+..+..+..++.....+.
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 82 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh
Confidence 445555666666777788 677788988866 888889999999999999999999999999999999998885555433
Q ss_pred heeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhch
Q psy5074 81 FVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS 160 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 160 (204)
++.+..+....+.+.+.+ ...+....++.|.+|+++|+++.++.+....++..+++.+.+.+.+..+|
T Consensus 83 -----------~~~~~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~ 150 (352)
T PF07690_consen 83 -----------SNFWLLLIARFLLGIGSG-FFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGW 150 (352)
T ss_dssp -----------CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHH
T ss_pred -----------hhHHHHhhhccccccccc-cccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccc
Confidence 133433333444444433 34556778999999999999999999999999999999999999888899
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccC
Q psy5074 161 AATYGLLGLICTLGAVFVYTRVPE 184 (204)
Q Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~e 184 (204)
++.+++.+++.++..++...+.++
T Consensus 151 ~~~~~~~~~~~~~~~il~~~~~~~ 174 (352)
T PF07690_consen 151 RWAFLISAILSLIAAILFILFLPE 174 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCC--
T ss_pred ccccccccchhhhhhhhHhhhhhh
Confidence 999999998888887754444443
No 22
>PRK10054 putative transporter; Provisional
Probab=99.79 E-value=1.7e-17 Score=129.64 Aligned_cols=171 Identities=13% Similarity=0.039 Sum_probs=126.4
Q ss_pred HHHHHHhhChhHHHHhHHHHHH-hhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHh
Q psy5074 3 LMTFQRFSGVSALIYYTVDIFR-NAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAY 80 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~ 80 (204)
+..+....+.+....++|.+++ ++|++..+ ++......+...+++++.|+++||+|||+.++++.....++.+...+.
T Consensus 14 ~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~ 93 (395)
T PRK10054 14 ASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV 93 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777776664 57998876 888888888999999999999999999999998888777776666554
Q ss_pred heeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhch
Q psy5074 81 FVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS 160 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 160 (204)
. +.+..+....+.....+ ...+....+..|..|+++|+++.++.+...++|..++|.+.+.+.+ .+|
T Consensus 94 ~-----------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~ 160 (395)
T PRK10054 94 N-----------NVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSI 160 (395)
T ss_pred h-----------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence 1 22222222223322222 2345566788999999999999999999999999999999998875 789
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 161 AATYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
+..|...++..++..+...++.||++
T Consensus 161 ~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 161 NLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99998877777766555555455543
No 23
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.78 E-value=2.8e-18 Score=132.59 Aligned_cols=170 Identities=9% Similarity=-0.027 Sum_probs=131.5
Q ss_pred HHHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhe
Q psy5074 4 MTFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFV 82 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~ 82 (204)
.++..+.....+....|.+.+++|.+.++ ++......++..++.++.|+++||+|||+.+..+..+..++.++.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~- 81 (379)
T TIGR00881 3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST- 81 (379)
T ss_pred hhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh-
Confidence 34555556677788889998889999877 8888999999999999999999999999999999998888888777652
Q ss_pred eecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHH-HHhHHHHHhhchh
Q psy5074 83 FKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVS-KVFMDLIDTVGSA 161 (204)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~g~~ 161 (204)
+.+..++...+.+.+.+ ...+....+..|.+|+++|+++.++.+....++..+++ .+...+.+..+|+
T Consensus 82 ----------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 150 (379)
T TIGR00881 82 ----------SLWVMAALWALNGIFQG-MGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWH 150 (379)
T ss_pred ----------hHHHHHHHHHHHHhhcc-ccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCch
Confidence 22333333333333333 34466778999999999999999999999999999999 4666666778999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCC
Q psy5074 162 ATYGLLGLICTLGAVFVYTRVPET 185 (204)
Q Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~e~ 185 (204)
+.+.+.+.+.++..+..+++.||+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 151 WVFIVPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred hHHHHHHHHHHHHHHHHheeeCCC
Confidence 988888777776666666556654
No 24
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.78 E-value=3.1e-17 Score=135.68 Aligned_cols=140 Identities=15% Similarity=0.156 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccc
Q psy5074 36 SIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPI 115 (204)
Q Consensus 36 ~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (204)
..+..++.+++.++.|+++||+|||++++++.++.+++.+++.+.. .....++..++..++.+. ..+.
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~-----------s~~~ll~~~~l~g~~~~~-~~~~ 668 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN-----------SESAMIALLCLFGGLSIA-AWNA 668 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc-----------cHHHHHHHHHHHHHHHHH-HHHH
Confidence 4556678899999999999999999999999988888887776541 222333333333333333 3456
Q ss_pred hhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q psy5074 116 PWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTLGAVFVYTRVPETKNKS 189 (204)
Q Consensus 116 ~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~ 189 (204)
.+++++|++|++.|++++|+.+..+++|++++|.+.+.+.+.. ...++++.+++.+++.++.++ +|||+++.
T Consensus 669 ~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~-~~~pf~i~a~~lll~~ll~~~-LPET~~~~ 740 (742)
T TIGR01299 669 LDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT-KAAPILFASAALACGGLLALK-LPDTRGQV 740 (742)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHh-CCCCcccc
Confidence 7789999999999999999999999999999999999887653 446777777777776666554 69998764
No 25
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.78 E-value=2.4e-17 Score=127.82 Aligned_cols=162 Identities=15% Similarity=0.044 Sum_probs=127.7
Q ss_pred hHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCC
Q psy5074 13 SALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQ 91 (204)
Q Consensus 13 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (204)
.......|.+.+++|.+.++ ........++..++.++.|+++||+|||+.+..+..+..++........
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~---------- 77 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ---------- 77 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc----------
Confidence 45567788888999998766 7888888999999999999999999999999999988888888776551
Q ss_pred CccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHH
Q psy5074 92 DYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLIC 171 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 171 (204)
..+.......+.+.+.+. ..+....+..|.+|+++|+++.++.+....++..++|.+.+.+.+..+|++.+.+.+.+.
T Consensus 78 -~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 155 (377)
T PRK11102 78 -TIDQLIYMRFLHGLAAAA-ASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAA 155 (377)
T ss_pred -cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 223333333333333332 334556789999999999999999999999999999999999999899999998888877
Q ss_pred HHHHHHHhhcccCCC
Q psy5074 172 TLGAVFVYTRVPETK 186 (204)
Q Consensus 172 ~i~~~~~~~~~~e~~ 186 (204)
++..+...+..||++
T Consensus 156 ~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 156 ILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHHhCCccC
Confidence 777666666567753
No 26
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.77 E-value=2.2e-17 Score=129.34 Aligned_cols=166 Identities=14% Similarity=-0.029 Sum_probs=126.3
Q ss_pred hhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCC
Q psy5074 9 FSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQG 87 (204)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (204)
....+......|.+.+++|.+.++ ++......++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------- 100 (406)
T PRK11551 28 GLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA------- 100 (406)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------
Confidence 333445666778888899998766 888888999999999999999999999999999888887777666554
Q ss_pred CCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHH
Q psy5074 88 YDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLL 167 (204)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~ 167 (204)
.+.+.......+.+.+.+. ..+....++.|.+|+++|+++.++.+....++..+++.+...+.+..+|+..+++.
T Consensus 101 ----~~~~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 175 (406)
T PRK11551 101 ----WDFPSLLVARLLTGVGLGG-ALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVG 175 (406)
T ss_pred ----ccHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence 1223333333333333332 33456678999999999999999999999999999998888888888999988887
Q ss_pred HHHHHHHHHHHhhcccCCC
Q psy5074 168 GLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 168 ~~~~~i~~~~~~~~~~e~~ 186 (204)
++..++..+....++||++
T Consensus 176 ~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 176 GVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHHHHHHHHHHHhCCCCh
Confidence 7766666555555577753
No 27
>TIGR00895 2A0115 benzoate transport.
Probab=99.77 E-value=8.9e-18 Score=130.65 Aligned_cols=165 Identities=16% Similarity=0.046 Sum_probs=126.6
Q ss_pred hChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCC
Q psy5074 10 SGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGY 88 (204)
Q Consensus 10 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (204)
........+.|.+.+++|.+..+ .+......++..++.++.|+++||+|||+.+..+..+..++.......
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-------- 102 (398)
T TIGR00895 31 YDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA-------- 102 (398)
T ss_pred HHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc--------
Confidence 33455667788888889988766 778888888999999999999999999999999888888877766654
Q ss_pred CCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHH
Q psy5074 89 DMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLG 168 (204)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 168 (204)
...+.......+.+.+.+ ...+....+..|.+|+++|+++.++.+....++..+++.+.+.+.+..+|+..+.+.+
T Consensus 103 ---~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~ 178 (398)
T TIGR00895 103 ---TNVTQLLILRFLAGLGLG-GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGG 178 (398)
T ss_pred ---cchHHHHHHHHHHhcccc-cchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhh
Confidence 122233333333333322 2345667899999999999999999999999999999999999999999998888876
Q ss_pred HHHHHHHHHHhhcccCCC
Q psy5074 169 LICTLGAVFVYTRVPETK 186 (204)
Q Consensus 169 ~~~~i~~~~~~~~~~e~~ 186 (204)
....+..+..+.+.||++
T Consensus 179 ~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 179 IAPLLLLLLLMRFLPESI 196 (398)
T ss_pred hHHHHHHHHHHHhCCCCC
Confidence 666666665555577753
No 28
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.77 E-value=5.9e-17 Score=126.99 Aligned_cols=165 Identities=15% Similarity=0.078 Sum_probs=125.2
Q ss_pred ChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCC
Q psy5074 11 GVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYD 89 (204)
Q Consensus 11 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (204)
+...+....|.+.+++|.+.++ .+......++..++.++.|.++||+|||+.++.+.....++........
T Consensus 28 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-------- 99 (406)
T PRK15402 28 ANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ-------- 99 (406)
T ss_pred hhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc--------
Confidence 4444555667788889998766 7778888899999999999999999999999999888888877766541
Q ss_pred CCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHH
Q psy5074 90 MQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGL 169 (204)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~ 169 (204)
+.+..+....+.+...+. ..+.......|.+|+++|.++.++......++..++|.+.+.+.+..+|++.+++.++
T Consensus 100 ---~~~~l~~~~~l~G~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~ 175 (406)
T PRK15402 100 ---SIEQFTLLRFLQGIGLCF-IGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAA 175 (406)
T ss_pred ---cHHHHHHHHHHHHhHhhh-HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHH
Confidence 223333333333333222 2345667889999999999999998888888889999999999888899999988888
Q ss_pred HHHHHHHHHhhcccCCCC
Q psy5074 170 ICTLGAVFVYTRVPETKN 187 (204)
Q Consensus 170 ~~~i~~~~~~~~~~e~~~ 187 (204)
..++..+..++..||+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 176 LAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHHHHHhCCCCCc
Confidence 877776666555787653
No 29
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.77 E-value=1.1e-16 Score=132.34 Aligned_cols=161 Identities=15% Similarity=0.023 Sum_probs=121.5
Q ss_pred hHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCC
Q psy5074 13 SALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQ 91 (204)
Q Consensus 13 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (204)
..+...+|.+.+++|++... .++.....++.+++++++|+++||+|||+.++++.++.+++.++..+..
T Consensus 184 ~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~---------- 253 (742)
T TIGR01299 184 FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQ---------- 253 (742)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 34566788888888988766 7888889999999999999999999999999999888888877776551
Q ss_pred CccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhh-------------
Q psy5074 92 DYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV------------- 158 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------- 158 (204)
..+..++...+.+.+.+. ..+....++.|.+|++.|++..++......+|..+++.+...+...+
T Consensus 254 -s~~~llv~R~l~G~g~g~-~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~ 331 (742)
T TIGR01299 254 -GYGFFLFCRLLSGFGIGG-AIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFH 331 (742)
T ss_pred -hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccc
Confidence 223334444444444443 34677899999999999999999999999999888888776665433
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 159 GSAATYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 159 g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
+||+.+++.++..++.. +..+++||++
T Consensus 332 gWR~l~~i~~lp~ll~l-l~~~~lPESP 358 (742)
T TIGR01299 332 SWRVFVIVCAFPCVFAI-GALTFMPESP 358 (742)
T ss_pred cHHHHHHHHHHHHHHHH-HHHHHcCCCH
Confidence 57777776666555544 4445589873
No 30
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.77 E-value=5.9e-17 Score=127.64 Aligned_cols=152 Identities=14% Similarity=-0.020 Sum_probs=117.9
Q ss_pred HHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheee
Q psy5074 6 FQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFK 84 (204)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~ 84 (204)
+..........+..|.+.+++|.+..+ ........++..+++++.|+++||+|||+.+..+.....++........
T Consensus 28 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--- 104 (426)
T PRK12307 28 VFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS--- 104 (426)
T ss_pred HHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh---
Confidence 334444455666778888889998866 7888889999999999999999999999999999999988887776652
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHH
Q psy5074 85 NQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATY 164 (204)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 164 (204)
+.+...+...+.+.+.+ ...+....++.|.+|+++|+++.++......+|..+++.+.+.+.+..+|++.+
T Consensus 105 --------~~~~l~~~r~l~G~g~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f 175 (426)
T PRK12307 105 --------GVIMLTLSRFIVGMGMA-GEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAF 175 (426)
T ss_pred --------HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHH
Confidence 22333333333333333 234456678999999999999999999999999999999888888888999988
Q ss_pred HHHHH
Q psy5074 165 GLLGL 169 (204)
Q Consensus 165 ~~~~~ 169 (204)
.+...
T Consensus 176 ~i~~~ 180 (426)
T PRK12307 176 FVGLL 180 (426)
T ss_pred HHHHH
Confidence 76443
No 31
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.77 E-value=8.4e-22 Score=156.20 Aligned_cols=191 Identities=33% Similarity=0.591 Sum_probs=147.6
Q ss_pred HHHHHHhhChhHHHHhHHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHH-hh
Q psy5074 3 LMTFQRFSGVSALIYYTVDIFRNAGTRIAPSTASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVA-YF 81 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~-~~ 81 (204)
+.+++++.+.+....|.|.+.++.+.+.+ ...+.+..+...++.+++.++.||+|||+.++.+...++++...+.. ..
T Consensus 260 l~~~~~~~g~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~ 338 (451)
T PF00083_consen 260 LQFFQQFSGINFIFYYSPSIFENAGISNS-FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFF 338 (451)
T ss_pred ccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45566778888888899999888888765 44455666677788888889999999999999999888888777751 11
Q ss_pred eeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchh
Q psy5074 82 VFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSA 161 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 161 (204)
...+.+ .......+....+....++.++++..+.+.+|++|++.|+++.++....+++++.+.+.+.+.+.+..+..
T Consensus 339 ~~~~~~---~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~ 415 (451)
T PF00083_consen 339 LGVSSS---SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGW 415 (451)
T ss_pred cccccc---cccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 111100 01133344444455556666788888899999999999999999999999999999999999888877733
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHH
Q psy5074 162 ATYGLLGLICTLGAVFVYTRVPETKNKSFEAIQAEL 197 (204)
Q Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~ 197 (204)
..+.+++.++++..+..++++||||+++.||+++++
T Consensus 416 ~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 416 GVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred ccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 677788888888888888889999999999998864
No 32
>PRK10504 putative transporter; Provisional
Probab=99.76 E-value=1.1e-16 Score=127.84 Aligned_cols=170 Identities=12% Similarity=0.035 Sum_probs=130.4
Q ss_pred HHHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhe
Q psy5074 4 MTFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFV 82 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~ 82 (204)
..+.+....+.+..+.|.+.+++|.+..+ .+......++..++.++.|+++||+|||+.++.+..+..++.+.....
T Consensus 18 ~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-- 95 (471)
T PRK10504 18 GFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS-- 95 (471)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh--
Confidence 34555556667788999999999998766 677777888889999999999999999999998888877777665543
Q ss_pred eecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhH
Q psy5074 83 FKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAA 162 (204)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 162 (204)
++.+..+....+.+.+.+. ..+....+..|.+|+++|+++.++.+....++..++|.+.+.+.+..+|++
T Consensus 96 ---------~~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~ 165 (471)
T PRK10504 96 ---------GTLNELLLARVLQGVGGAM-MVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHW 165 (471)
T ss_pred ---------CCHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHH
Confidence 1233333333444333333 345666788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCC
Q psy5074 163 TYGLLGLICTLGAVFVYTRVPET 185 (204)
Q Consensus 163 ~~~~~~~~~~i~~~~~~~~~~e~ 185 (204)
.|.+......+..+......|+.
T Consensus 166 ~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 166 IFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCc
Confidence 99887776666666555555554
No 33
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.76 E-value=1.9e-16 Score=126.60 Aligned_cols=167 Identities=11% Similarity=-0.063 Sum_probs=118.9
Q ss_pred HHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhee
Q psy5074 5 TFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVF 83 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~ 83 (204)
++..+...+....+.|.+.+++|++.++ ++......++..+++++.|+++||+|||+++..+.+..+++.++.....
T Consensus 45 ~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-- 122 (476)
T PLN00028 45 FFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS-- 122 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc--
Confidence 4444455566777788898999998766 6777778888899999999999999999999888888887777666541
Q ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH-------
Q psy5074 84 KNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID------- 156 (204)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~------- 156 (204)
+.+.......+.+.+.+ ... ....+++|.+|+++|+++.++.+...++++.+++.+.+.+..
T Consensus 123 ---------s~~~l~~~r~l~G~~~~-~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 191 (476)
T PLN00028 123 ---------SATGFIAVRFFIGFSLA-TFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGA 191 (476)
T ss_pred ---------CHHHHHHHHHHHHHHHH-hhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 22222232333333222 222 233568899999999999999988878887777766655432
Q ss_pred --hhchhHHHHHHHHHHHHHHHHHhhcccC
Q psy5074 157 --TVGSAATYGLLGLICTLGAVFVYTRVPE 184 (204)
Q Consensus 157 --~~g~~~~~~~~~~~~~i~~~~~~~~~~e 184 (204)
..|||+.|.+.+++.++..+..+++.++
T Consensus 192 ~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~ 221 (476)
T PLN00028 192 PSFTAWRIAFFVPGLLHIIMGILVLTLGQD 221 (476)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 2489999998888887776666554433
No 34
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.75 E-value=4e-16 Score=122.17 Aligned_cols=168 Identities=17% Similarity=0.132 Sum_probs=124.6
Q ss_pred HHHHhhChhHHHHhHHHHHHhhCCCCCh------hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHH
Q psy5074 5 TFQRFSGVSALIYYTVDIFRNAGTRIAP------STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLV 78 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~ 78 (204)
.+....+......++|.+.+++|.+..+ +....+..+...++.++.|+++||+|||+.+..+.....+......
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 102 (408)
T PRK09874 23 CFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMG 102 (408)
T ss_pred HHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHH
Confidence 4444555556677889999998887543 3455667778889999999999999999999988888777776655
Q ss_pred HhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhh
Q psy5074 79 AYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV 158 (204)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 158 (204)
... +.+..+....+.+.. + +..+....+..|..|+++|+++.++.+....++..++|.+.+.+.+..
T Consensus 103 ~~~-----------~~~~~~~~~~~~g~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 169 (408)
T PRK09874 103 LAQ-----------NIWQFLILRALLGLL-G-GFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY 169 (408)
T ss_pred HHh-----------hHHHHHHHHHHHHHh-h-hhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 431 222333333333322 2 233455567889999999999999999999999999999999999989
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcccCC
Q psy5074 159 GSAATYGLLGLICTLGAVFVYTRVPET 185 (204)
Q Consensus 159 g~~~~~~~~~~~~~i~~~~~~~~~~e~ 185 (204)
+|+..+.+.+.+.++..+..+++.||+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 170 GLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999888887777766666656664
No 35
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.75 E-value=2.2e-16 Score=121.94 Aligned_cols=170 Identities=15% Similarity=0.049 Sum_probs=120.0
Q ss_pred HHHHHhhChhHHHHhHHH-HHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhh
Q psy5074 4 MTFQRFSGVSALIYYTVD-IFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYF 81 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~ 81 (204)
.++..+...+....+.|. +.+++|.+.++ ++......++..+++++.|+++||+|||+.++++.....++.+......
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~ 88 (366)
T TIGR00886 9 GFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV 88 (366)
T ss_pred HHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666677888885 66789999877 8888999999999999999999999999999999999988887776652
Q ss_pred eeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHh----
Q psy5074 82 VFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT---- 157 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~---- 157 (204)
...+.......+.+.+ +... +....+++|.+|+++|+++.++......+|..+++.+.+.+...
T Consensus 89 ----------~~~~~~~~~~~~~g~~-~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~ 156 (366)
T TIGR00886 89 ----------QSYSVLLLLRLFIGIA-GGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFG 156 (366)
T ss_pred ----------hhHHHHHHHHHHHHHh-chhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 0222222333333322 2222 34557889999999999999999888888877777777665542
Q ss_pred ------hchhHHH-HHHHHHHHHHHHHHhhcccCC
Q psy5074 158 ------VGSAATY-GLLGLICTLGAVFVYTRVPET 185 (204)
Q Consensus 158 ------~g~~~~~-~~~~~~~~i~~~~~~~~~~e~ 185 (204)
.+|++.+ ...+.+..+..+..+...+|+
T Consensus 157 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (366)
T TIGR00886 157 AGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADT 191 (366)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence 3788888 443444444444444444543
No 36
>PRK11043 putative transporter; Provisional
Probab=99.74 E-value=3.7e-16 Score=122.25 Aligned_cols=159 Identities=16% Similarity=0.010 Sum_probs=117.5
Q ss_pred hHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCC
Q psy5074 13 SALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQ 91 (204)
Q Consensus 13 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (204)
.......|.+.+++|.+.++ .+......++..+++++.|+++||+|||+.+..+.....++.......
T Consensus 23 ~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------- 91 (401)
T PRK11043 23 DMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV----------- 91 (401)
T ss_pred HHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-----------
Confidence 34444455567788888766 888888999999999999999999999999998888888777766654
Q ss_pred CccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHH
Q psy5074 92 DYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLIC 171 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 171 (204)
++.+.......+.+.+.+. ..+....+..|.+|+++|++..+..+....++..++|.+.+.+.+..+|+..+.+.+...
T Consensus 92 ~~~~~l~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~ 170 (401)
T PRK11043 92 ESAAQLLVLRFVQAVGVCS-AAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAIT 170 (401)
T ss_pred cCHHHHHHHHHHHHhhhHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 1223333333332222222 223445678899999999999998888888899999999999999999999988887777
Q ss_pred HHHHHHHhhccc
Q psy5074 172 TLGAVFVYTRVP 183 (204)
Q Consensus 172 ~i~~~~~~~~~~ 183 (204)
++..+..++..|
T Consensus 171 ~~~~~~~~~~~~ 182 (401)
T PRK11043 171 LLLILPTLRLKP 182 (401)
T ss_pred HHHHHHHHHcCC
Confidence 766655554333
No 37
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.74 E-value=4.2e-16 Score=121.71 Aligned_cols=161 Identities=17% Similarity=0.060 Sum_probs=121.0
Q ss_pred HHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCC
Q psy5074 14 ALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQD 92 (204)
Q Consensus 14 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (204)
......|.+.+++|.+.++ .+......++..++.++.|+++||+|||+.+..+.....++....... +
T Consensus 26 ~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----------~ 94 (394)
T PRK11652 26 IYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA-----------H 94 (394)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----------c
Confidence 3344567888889999876 788888999999999999999999999999999888888877766544 1
Q ss_pred ccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHH
Q psy5074 93 YSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICT 172 (204)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~ 172 (204)
+.+.......+.+.+.+. ..+....+..|.+|+++|+++.++.+....++..++|.+.+.+.+..||++.|.+.++...
T Consensus 95 ~~~~l~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~ 173 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGV-GGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGA 173 (394)
T ss_pred cHHHHHHHHHHHHhhhhH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 222333333333332222 2334556778899999999999999888888999999999999888899999988777766
Q ss_pred HHHHHHhhcccCCC
Q psy5074 173 LGAVFVYTRVPETK 186 (204)
Q Consensus 173 i~~~~~~~~~~e~~ 186 (204)
+..+...++.||++
T Consensus 174 ~~~~~~~~~~~~~~ 187 (394)
T PRK11652 174 GVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHHHhCCccC
Confidence 65555555577764
No 38
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.74 E-value=6.2e-17 Score=124.98 Aligned_cols=160 Identities=14% Similarity=0.077 Sum_probs=121.2
Q ss_pred hhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCC
Q psy5074 12 VSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDM 90 (204)
Q Consensus 12 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (204)
.+......|.+.+++|.+.++ ++......++..+++++.|+++||+|||+.+..+..+..++.+......
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~--------- 89 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIAD--------- 89 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHH---------
Confidence 345677899999999998877 8889999999999999999999999999999999999888887777652
Q ss_pred CCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHH
Q psy5074 91 QDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLI 170 (204)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~ 170 (204)
+.+.......+.+.+.+.. .+.......|.+| |+|+++.++......++..+++.+.+.+.+..+|++.|.+.++.
T Consensus 90 --~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~ 165 (377)
T TIGR00890 90 --SLAALYLTYGLASAGVGIA-YGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGII 165 (377)
T ss_pred --HHHHHHHHHHHHhHHHHHH-HHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2223333333333333322 2234456777777 56999999999888888887777777777888999999988888
Q ss_pred HHHHHHHHhhcccC
Q psy5074 171 CTLGAVFVYTRVPE 184 (204)
Q Consensus 171 ~~i~~~~~~~~~~e 184 (204)
.++..+..+++.||
T Consensus 166 ~~~~~~~~~~~~~~ 179 (377)
T TIGR00890 166 FLLVIVLGAFLIGY 179 (377)
T ss_pred HHHHHHHHHHheec
Confidence 77777666555544
No 39
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.73 E-value=2.7e-16 Score=126.15 Aligned_cols=171 Identities=13% Similarity=0.088 Sum_probs=111.8
Q ss_pred HhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeec
Q psy5074 8 RFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKN 85 (204)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~ 85 (204)
....++.+..|.|.++++ .|.+... ........++..++.++.|+++||+|||+.+..+.+...+...........
T Consensus 262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~-- 339 (490)
T PRK10642 262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS-- 339 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 345566777899998865 6887655 555666777888999999999999999998887766544333322211100
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc-hhHHH
Q psy5074 86 QGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATY 164 (204)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~ 164 (204)
...........+...+.+...+ ....+.+|.+|++.|+++.++.+.....++.++|.+.+++.+..+ |+.++
T Consensus 340 ------~~~~~~~~~~~~~g~~~~~~~g-~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~ 412 (490)
T PRK10642 340 ------NVIGLIFAGLLMLAVILNCFTG-VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPA 412 (490)
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHH
Confidence 1112222222222333232222 345677899999999999999777788888899999999887654 55555
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCC
Q psy5074 165 GLLGLICTLGAVFVYTRVPETKNK 188 (204)
Q Consensus 165 ~~~~~~~~i~~~~~~~~~~e~~~~ 188 (204)
....+..++..+..+ +.||++++
T Consensus 413 ~~~~~~~~i~~~~~~-~~pes~~~ 435 (490)
T PRK10642 413 YYLMVVAVIGLITGV-TMKETANR 435 (490)
T ss_pred HHHHHHHHHHHHHHH-HhccccCC
Confidence 555555555555444 46888653
No 40
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.73 E-value=8e-16 Score=120.44 Aligned_cols=168 Identities=14% Similarity=0.036 Sum_probs=125.0
Q ss_pred HHHHhhChhHHHHhHHHHH-HhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhe
Q psy5074 5 TFQRFSGVSALIYYTVDIF-RNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFV 82 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~ 82 (204)
.+....+.+.+..+.|.++ ++.|.+... +.......+...+..++.|+++||+|||+.+..+.....+....+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-- 96 (400)
T PRK11646 19 NMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA-- 96 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh--
Confidence 3444555566666666554 567888766 777777788888889999999999999999999999998888877654
Q ss_pred eecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhH
Q psy5074 83 FKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAA 162 (204)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 162 (204)
+..+.......+.+...+ ...|...+++.|.+|+++|+++.++.+....++..++|.+.+.+. ..+|++
T Consensus 97 ---------~~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~ 165 (400)
T PRK11646 97 ---------HEPWLLWLSCILSGLGGT-LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRL 165 (400)
T ss_pred ---------ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHH
Confidence 123333333333333322 234555678899999999999999999999999999999999988 789999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCC
Q psy5074 163 TYGLLGLICTLGAVFVYTRVPET 185 (204)
Q Consensus 163 ~~~~~~~~~~i~~~~~~~~~~e~ 185 (204)
.|++.+...++..+...+..||.
T Consensus 166 ~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 166 VCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcc
Confidence 99887777666655544556664
No 41
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.73 E-value=1.1e-15 Score=122.19 Aligned_cols=158 Identities=13% Similarity=-0.105 Sum_probs=107.4
Q ss_pred CCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHH-HHHHHH
Q psy5074 27 GTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPI-FSVCTI 104 (204)
Q Consensus 27 g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 104 (204)
+.+..+ .+......++..+++++.|+++||+|||++++++..+..++.+..+............+...+..+ +...+.
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~ 130 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIG 130 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHH
Confidence 555545 788888999999999999999999999999999988888777665542100000000001112222 223333
Q ss_pred HHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHH--------HhhchhHHHHHHHHHHHHHHH
Q psy5074 105 VAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI--------DTVGSAATYGLLGLICTLGAV 176 (204)
Q Consensus 105 ~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~g~~~~~~~~~~~~~i~~~ 176 (204)
+.+.+ +..+....+++|.+|+++|+++.++.+....+|..+++.+...+. +..|||+.|.+.++..++..+
T Consensus 131 G~~~g-~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~ 209 (479)
T PRK10077 131 GIGVG-LASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLM 209 (479)
T ss_pred hhhHh-HHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHH
Confidence 33333 344566789999999999999999999888888887766554332 346899999887777766654
Q ss_pred HHhhcccCCC
Q psy5074 177 FVYTRVPETK 186 (204)
Q Consensus 177 ~~~~~~~e~~ 186 (204)
. .+++||++
T Consensus 210 ~-~~~l~~s~ 218 (479)
T PRK10077 210 L-LYFVPETP 218 (479)
T ss_pred H-HHcCCCCc
Confidence 4 44578874
No 42
>PRK03699 putative transporter; Provisional
Probab=99.73 E-value=7e-16 Score=120.53 Aligned_cols=155 Identities=10% Similarity=0.015 Sum_probs=118.5
Q ss_pred hHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCC
Q psy5074 13 SALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQ 91 (204)
Q Consensus 13 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (204)
.......|.+.+++|.+.++ ........++..+++++.|+++||+|||+.+..+.....++.......
T Consensus 24 ~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~----------- 92 (394)
T PRK03699 24 IVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS----------- 92 (394)
T ss_pred HHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-----------
Confidence 45667788998999998766 788888889999999999999999999999998888888877776654
Q ss_pred CccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH-hhchhHHHHHHHHH
Q psy5074 92 DYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID-TVGSAATYGLLGLI 170 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~~~~~~~~~~~ 170 (204)
++.+.......+.+.+.+.. .+....++.|.+|+++|+++.+..+....+++.++|.+.+.+.+ ..+||+.|.+.+++
T Consensus 93 ~~~~~~~~~~~l~G~~~g~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~ 171 (394)
T PRK03699 93 HSLALFSIAMFVLGVVSGIT-MSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLV 171 (394)
T ss_pred chHHHHHHHHHHHHHhhHhh-ccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 12233333334444444433 34556788999999999999999888888888899988888765 46899999887777
Q ss_pred HHHHHHHHh
Q psy5074 171 CTLGAVFVY 179 (204)
Q Consensus 171 ~~i~~~~~~ 179 (204)
.++..+..+
T Consensus 172 ~~~~~~~~~ 180 (394)
T PRK03699 172 YVAIFILTL 180 (394)
T ss_pred HHHHHHHHH
Confidence 666554443
No 43
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.73 E-value=4.4e-16 Score=125.01 Aligned_cols=168 Identities=14% Similarity=0.055 Sum_probs=123.2
Q ss_pred HHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhee
Q psy5074 5 TFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVF 83 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~ 83 (204)
.+.............|.+.+++|.+.++ .+......++..++.++.|+++||+|||+.++.+.....++.+.+....
T Consensus 29 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-- 106 (496)
T PRK03893 29 YLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAP-- 106 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh--
Confidence 3344444456667788888889998766 7788888899999999999999999999999999888888887776541
Q ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHH
Q psy5074 84 KNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAAT 163 (204)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 163 (204)
+.+.......+.+.+.+ +..+....++.|.+|+++|+++.++......++..+++.+.+.+.+..+|++.
T Consensus 107 ---------~~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~ 176 (496)
T PRK03893 107 ---------GYWTLFIARLVIGMGMA-GEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRAL 176 (496)
T ss_pred ---------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Confidence 22233333333333322 33445667899999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhhcccCC
Q psy5074 164 YGLLGLICTLGAVFVYTRVPET 185 (204)
Q Consensus 164 ~~~~~~~~~i~~~~~~~~~~e~ 185 (204)
|.+.....++ .+......||+
T Consensus 177 f~~~~~~~~~-~~~~~~~~p~~ 197 (496)
T PRK03893 177 FFIGILPIIF-ALWLRKNLPEA 197 (496)
T ss_pred HHHHHHHHHH-HHHHHHhCCCc
Confidence 8764333332 22223335654
No 44
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.72 E-value=4.4e-17 Score=123.74 Aligned_cols=161 Identities=12% Similarity=0.004 Sum_probs=138.8
Q ss_pred HHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCC
Q psy5074 14 ALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQD 92 (204)
Q Consensus 14 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (204)
.+..-+|.+.++.++|..+ ..+.+..++..-++.++.|.++||.+.|..+-.++++++++.+++++. +
T Consensus 47 nF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs-----------~ 115 (448)
T COG2271 47 NFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS-----------P 115 (448)
T ss_pred hHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh-----------h
Confidence 4556688888888899877 899999999999999999999999999999999999999999999987 2
Q ss_pred ccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHh--HHHHHhhchhHHHHHHHHH
Q psy5074 93 YSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVF--MDLIDTVGSAATYGLLGLI 170 (204)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~g~~~~~~~~~~~ 170 (204)
+.+...++..+.+.+.+.++.| ....++.++|+++||+..++.+...++|+.+.|.+. +....+.+|+..|++-+++
T Consensus 116 s~~~~~~l~~lng~fQg~Gwpp-~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgii 194 (448)
T COG2271 116 SLFLFAVLWVLNGWFQGMGWPP-CARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGII 194 (448)
T ss_pred HHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 3445555556667777777654 447789999999999999999999999999999998 8888888999999999999
Q ss_pred HHHHHHHHhhcccCCC
Q psy5074 171 CTLGAVFVYTRVPETK 186 (204)
Q Consensus 171 ~~i~~~~~~~~~~e~~ 186 (204)
+++..++.++..+|++
T Consensus 195 aiival~~~~~~rd~P 210 (448)
T COG2271 195 AIIVALILLFLLRDRP 210 (448)
T ss_pred HHHHHHHHHHHhCCCc
Confidence 9998888888777654
No 45
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.72 E-value=8.8e-16 Score=118.87 Aligned_cols=173 Identities=15% Similarity=0.024 Sum_probs=119.6
Q ss_pred hHHHHHHhhChhHHHHhHHHHH-HhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHh-hHHHHHHHHHHH
Q psy5074 2 GLMTFQRFSGVSALIYYTVDIF-RNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTS-EITMAFCQLLLV 78 (204)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~-~~~~~i~~~~~~ 78 (204)
++..+....+........|.++ +++|.+..+ ++......+...+.+++.|.++||+||||.++.. .....+......
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~ 82 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA 82 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Confidence 3455666666677777777665 568888766 7777888888899999999999999999876554 444444444444
Q ss_pred HhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhH--hHHHHHHHHHHHHHHHHHhHHHHH
Q psy5074 79 AYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWS--SSLLMCYSWSCLFLVSKVFMDLID 156 (204)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~--~~~~~~~~~~~~~~~~~~~~~l~~ 156 (204)
.. ++.+..+....+.... .....|....+..|..|++.|+.+ .+.......++..+++.+.+.+.+
T Consensus 83 ~~-----------~~~~~l~~~~~~~g~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~ 150 (375)
T TIGR00899 83 WN-----------RNYFLLLVLGVLLSSF-ASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL 150 (375)
T ss_pred hc-----------chHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH
Confidence 33 1222222222222222 223345556677888888777754 577777788899999999999998
Q ss_pred hhchhHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 157 TVGSAATYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 157 ~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
..+|++.|.+.+...++..+..++..||.+
T Consensus 151 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 151 GFGFTVMFLTAALAFVLCGVLVWLFLPSYP 180 (375)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 899999999888877777666666577754
No 46
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.72 E-value=2.4e-15 Score=121.08 Aligned_cols=145 Identities=12% Similarity=-0.022 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCc-cHHHHHHHHHHHHHHHhc
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDY-SWIPIFSVCTIVAIFRIG 111 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 111 (204)
.+......++..+++++.|+++||+|||+.+.++.++..++.++......... .. .+..+....+.+.+.+.
T Consensus 59 ~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~~~~~~r~l~G~~~g~- 131 (502)
T TIGR00887 59 AAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSP------KSVMATLCFWRFWLGVGIGG- 131 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCccc------chHHHHHHHHHHHHHHHHhh-
Confidence 57788888999999999999999999999999999888888877665421100 01 12333333444444433
Q ss_pred CccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH-----------------------hhchhHHHHHHH
Q psy5074 112 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID-----------------------TVGSAATYGLLG 168 (204)
Q Consensus 112 ~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------------------~~g~~~~~~~~~ 168 (204)
..+....+.+|.+|+++|+++.++.+....+|..+++.+...+.. ..+||..+.+.+
T Consensus 132 ~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ 211 (502)
T TIGR00887 132 DYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGA 211 (502)
T ss_pred hhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHH
Confidence 345667899999999999999999999999988888877665432 237999887666
Q ss_pred HHHHHHHHHHhhcccCC
Q psy5074 169 LICTLGAVFVYTRVPET 185 (204)
Q Consensus 169 ~~~~i~~~~~~~~~~e~ 185 (204)
+..++..+. .+++||+
T Consensus 212 ip~~i~~~~-~~~lpES 227 (502)
T TIGR00887 212 VPALLALYF-RLTIPET 227 (502)
T ss_pred HHHHHHHHH-HHhCCCC
Confidence 666555444 4458997
No 47
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.71 E-value=1.5e-15 Score=120.71 Aligned_cols=163 Identities=12% Similarity=-0.061 Sum_probs=114.8
Q ss_pred HHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCc
Q psy5074 15 LIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDY 93 (204)
Q Consensus 15 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (204)
+....|++.++ |.+.++ +.......++..+++++.|+++||+|||++++.+..+.++..+......... ..
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~-------~~ 119 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-------SS 119 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhccc-------cc
Confidence 34567877776 888766 7888889999999999999999999999999999988888887766542110 11
Q ss_pred cHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHH-HHHHhHHHHHhhchhHHHHHHHHHHH
Q psy5074 94 SWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFL-VSKVFMDLIDTVGSAATYGLLGLICT 172 (204)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~g~~~~~~~~~~~~~ 172 (204)
.+..+....+.+.+.+. ..+.......|.+|+++|+++.++.+....+++.+ ++.....+....+|++.|++.+.+.+
T Consensus 120 ~~~~~~~~~l~gi~~g~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~ 198 (452)
T PRK11273 120 IAVMFVLLFLCGWFQGM-GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAI 198 (452)
T ss_pred HHHHHHHHHHHHHHHhc-cchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 22223333333333333 23444467789999999999999998888887654 44433333344589999988887777
Q ss_pred HHHHHHhhcccCCC
Q psy5074 173 LGAVFVYTRVPETK 186 (204)
Q Consensus 173 i~~~~~~~~~~e~~ 186 (204)
+..++.++++||++
T Consensus 199 ~~~~l~~~~~~~~~ 212 (452)
T PRK11273 199 LVALFAFAMMRDTP 212 (452)
T ss_pred HHHHHHHHHccCCH
Confidence 76666666677653
No 48
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.71 E-value=1.5e-15 Score=116.03 Aligned_cols=163 Identities=18% Similarity=0.092 Sum_probs=127.8
Q ss_pred HHHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhe
Q psy5074 4 MTFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFV 82 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~ 82 (204)
..+....+........|.+.++.|.+.++ ........+...++.++.|+++||+|||+.+..+.....++........
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~- 85 (352)
T cd06174 7 GFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFAS- 85 (352)
T ss_pred HHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhc-
Confidence 34455566667778889998888888766 8888889999999999999999999999999999999988888776551
Q ss_pred eecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhH
Q psy5074 83 FKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAA 162 (204)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 162 (204)
..+.......+.+.+.+ ...+....+..|.+|+|+|++..++.+....++..+++.+.+.+.+..+|+.
T Consensus 86 ----------~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 154 (352)
T cd06174 86 ----------SLWLLLVGRFLLGLGGG-ALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRW 154 (352)
T ss_pred ----------cHHHHHHHHHHHHcccc-cccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 22333333333333322 2345667899999999999999999999999999999999999999889998
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5074 163 TYGLLGLICTLGAVFV 178 (204)
Q Consensus 163 ~~~~~~~~~~i~~~~~ 178 (204)
.+.+.+...++..+..
T Consensus 155 ~~~~~~~~~~~~~~~~ 170 (352)
T cd06174 155 LFLILAILGLLLALLL 170 (352)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8887777666655443
No 49
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.70 E-value=6.2e-16 Score=122.41 Aligned_cols=162 Identities=12% Similarity=-0.036 Sum_probs=116.6
Q ss_pred HHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCc
Q psy5074 15 LIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDY 93 (204)
Q Consensus 15 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (204)
+....|.+. +.|.+.++ .+......++..+++++.|+++||+|||+++..+.++..++........... ..
T Consensus 46 ~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 117 (438)
T TIGR00712 46 FALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWAT-------SS 117 (438)
T ss_pred HHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcccccc-------ch
Confidence 344566665 46888777 8888889999999999999999999999999988888888776655432110 01
Q ss_pred cHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH-hhchhHHHHHHHHHHH
Q psy5074 94 SWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID-TVGSAATYGLLGLICT 172 (204)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~~~~~~~~~~~~~ 172 (204)
.+.......+.+.+.+.. .+.....+.|.+|+++|+++.++.+....+++.+++.+.+...+ ..+|+..|++.++..+
T Consensus 118 ~~~l~~~~~l~g~~~g~~-~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~ 196 (438)
T TIGR00712 118 IAIMFVLLFLNGWFQGMG-WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAI 196 (438)
T ss_pred HHHHHHHHHHHHHHhhcc-hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 122222233333333332 23445677899999999999999999999999998888776544 4689999998888877
Q ss_pred HHHHHHhhcccCC
Q psy5074 173 LGAVFVYTRVPET 185 (204)
Q Consensus 173 i~~~~~~~~~~e~ 185 (204)
+..+..+++.||+
T Consensus 197 i~~~~~~~~~~~~ 209 (438)
T TIGR00712 197 IVALFAFAMMRDT 209 (438)
T ss_pred HHHHHHHHhccCC
Confidence 7766666666764
No 50
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.70 E-value=1.3e-15 Score=121.12 Aligned_cols=158 Identities=15% Similarity=0.087 Sum_probs=117.0
Q ss_pred hHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCC
Q psy5074 13 SALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQ 91 (204)
Q Consensus 13 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (204)
+.+..+.|.+.+++|.+.++ .+..........++.++.|+++||+|||+.++.+..+..+..+......
T Consensus 36 ~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~---------- 105 (455)
T TIGR00892 36 KAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSS---------- 105 (455)
T ss_pred cchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhh----------
Confidence 34566788888999998776 7777777777888999999999999999999998888887777765541
Q ss_pred CccHHHHHHH-HHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHH
Q psy5074 92 DYSWIPIFSV-CTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLI 170 (204)
Q Consensus 92 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~ 170 (204)
+.+...... .+.+.+.+... +....++.|.+| ++|+++.++.+....++..++|.+.+.+.+..||++.|++.+++
T Consensus 106 -~~~~l~~~~~~l~G~~~~~~~-~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~ 182 (455)
T TIGR00892 106 -NVIELYLTAGFITGLGLAFNF-QPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGL 182 (455)
T ss_pred -hHHHHHHHHHHHHHhcchhhh-hHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 222222222 22222322222 334466778886 78999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHhhccc
Q psy5074 171 CTLGAVFVYTRVP 183 (204)
Q Consensus 171 ~~i~~~~~~~~~~ 183 (204)
.++..+..++..|
T Consensus 183 ~~~~~v~~~~~~~ 195 (455)
T TIGR00892 183 LLHCCVCGALMRP 195 (455)
T ss_pred HHHHHHHHHHhCC
Confidence 7766554444333
No 51
>KOG1330|consensus
Probab=99.70 E-value=6.5e-18 Score=129.36 Aligned_cols=164 Identities=11% Similarity=0.002 Sum_probs=135.1
Q ss_pred hHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCC
Q psy5074 13 SALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQ 91 (204)
Q Consensus 13 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (204)
+.+..-.+..-+.+|++.+. +.+.....+...+.+++.|+++||+.||+++.+|..+..++.+..++.
T Consensus 50 ~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs----------- 118 (493)
T KOG1330|consen 50 YTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS----------- 118 (493)
T ss_pred hhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH-----------
Confidence 44444455555557888866 899999999999999999999999999999999999999999988877
Q ss_pred CccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc-hhHHHHHHHHH
Q psy5074 92 DYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGLI 170 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~~~~~ 170 (204)
...+.+.+...+.+.....+.|+...+++|.+|..+|+++.++.+.....|..++-.+...+.+..+ ||+.|..-+++
T Consensus 119 -~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl 197 (493)
T KOG1330|consen 119 -NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVL 197 (493)
T ss_pred -HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHH
Confidence 2344455555444555566788999999999999999999999999999998888877777777666 99999999999
Q ss_pred HHHHHHHHhhcccCCCCC
Q psy5074 171 CTLGAVFVYTRVPETKNK 188 (204)
Q Consensus 171 ~~i~~~~~~~~~~e~~~~ 188 (204)
.++..++..++.+|++.+
T Consensus 198 ~vi~~~L~~~f~~eP~rg 215 (493)
T KOG1330|consen 198 GVIVGLLVFLFVREPERG 215 (493)
T ss_pred HHHHHHHHHhhccCcccc
Confidence 999998888888877543
No 52
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.70 E-value=2.3e-15 Score=118.95 Aligned_cols=176 Identities=13% Similarity=0.036 Sum_probs=111.5
Q ss_pred HHHhhChhHHHHhHHHHHHhhC---CCCCh-hH---HHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHH
Q psy5074 6 FQRFSGVSALIYYTVDIFRNAG---TRIAP-ST---ASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLV 78 (204)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~g---~~~~~-~~---~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~ 78 (204)
+.+......+....|.+.++++ .+..+ .. ......++..++++++|+++||+|||+.+..+....+++.+..+
T Consensus 32 ~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~ 111 (432)
T PRK10406 32 LVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIA 111 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 3444555566677777777764 33222 22 22334455569999999999999999999999999999998887
Q ss_pred HhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHH---
Q psy5074 79 AYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI--- 155 (204)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~--- 155 (204)
+..++.... .......+....+.+.+.+ +..+....+++|.+|+++|++..++.+.....|..+++.+...+.
T Consensus 112 ~~~~~~~~~---~~~~~~l~~~R~l~G~g~g-~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 187 (432)
T PRK10406 112 CLPGYETIG---TWAPALLLLARLFQGLSVG-GEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTL 187 (432)
T ss_pred hcCCchhHH---HHHHHHHHHHHHHHHhhhh-hhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 653211000 0001122223333333322 344567789999999999999999887777676666665544332
Q ss_pred -----HhhchhHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 156 -----DTVGSAATYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 156 -----~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
..+|||..|.+.+++.++... .....||++
T Consensus 188 ~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~ 222 (432)
T PRK10406 188 EDAELREWGWRIPFALGAVLAVVALW-LRRQLDETS 222 (432)
T ss_pred CHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCc
Confidence 257999999877666655432 333356654
No 53
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.70 E-value=3.4e-15 Score=119.84 Aligned_cols=176 Identities=13% Similarity=0.046 Sum_probs=112.5
Q ss_pred HHHhhChhHHHHhHHHHHHhhCCCCCh--hHH-----HHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHH
Q psy5074 6 FQRFSGVSALIYYTVDIFRNAGTRIAP--STA-----SIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLV 78 (204)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~-----~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~ 78 (204)
+........+.+..|.+.++++.+.++ ... .....++..+++++.|+++||+|||+++.++.++++++.++.+
T Consensus 26 ~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a 105 (490)
T PRK10642 26 AMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIG 105 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 333444445556677776666433322 221 2445577889999999999999999999999999999999988
Q ss_pred HhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHH---
Q psy5074 79 AYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI--- 155 (204)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~--- 155 (204)
+..++..... ......+....+.+.+.+ +..+....+++|.+|+++|++..++......+|..+++.+...+.
T Consensus 106 ~~~~~~~~g~---~a~~~l~~~R~l~G~g~g-~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~ 181 (490)
T PRK10642 106 LIPSYATIGI---WAPILLLLCKMAQGFSVG-GEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIV 181 (490)
T ss_pred hcccHHHHHH---HHHHHHHHHHHHHHhHhH-hhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7632210000 000012222333333333 334566689999999999999999988777777777665544332
Q ss_pred -----HhhchhHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 156 -----DTVGSAATYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 156 -----~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
..+|||+.|++.+.+.++.. +.....||++
T Consensus 182 ~~~~~~~~gWR~~f~i~~~~~l~~~-~~~~~~~esp 216 (490)
T PRK10642 182 GEANFLDWGWRIPFFIALPLGIIGL-YLRHALEETP 216 (490)
T ss_pred CHHHhcCccHHHHHHHHHHHHHHHH-HHHHcCCCCh
Confidence 35799999988665554433 3344578764
No 54
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.70 E-value=1e-15 Score=119.65 Aligned_cols=149 Identities=12% Similarity=-0.032 Sum_probs=116.5
Q ss_pred hHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCC
Q psy5074 13 SALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQ 91 (204)
Q Consensus 13 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (204)
.......|.+.+++|.+.++ ++......++..+++++.|+++||+|||+++..+..+.+++.+...+..
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~---------- 95 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYP---------- 95 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCc----------
Confidence 34567788999999999877 8889999999999999999999999999999999999999999888762
Q ss_pred CccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhh-chhHHHHHHHHH
Q psy5074 92 DYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV-GSAATYGLLGLI 170 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~~~~~~ 170 (204)
+.+..+....+.+.+.+. ..+....++.|.+| ++|+++.+........|..+++.+.+.+.++. +|+..+.+++..
T Consensus 96 -~~~~ll~~r~l~Gig~~~-~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~ 172 (393)
T PRK09705 96 -QSALLLSSALLGGVGIGI-IQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALP 172 (393)
T ss_pred -chHHHHHHHHHHHhHHHH-HhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 223333333444444443 33445567888887 77999999999988899999999999888775 798877666555
Q ss_pred HHHH
Q psy5074 171 CTLG 174 (204)
Q Consensus 171 ~~i~ 174 (204)
.++.
T Consensus 173 ~~~~ 176 (393)
T PRK09705 173 AVVA 176 (393)
T ss_pred HHHH
Confidence 4443
No 55
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.70 E-value=1.8e-15 Score=120.75 Aligned_cols=164 Identities=12% Similarity=-0.001 Sum_probs=109.7
Q ss_pred HHhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheee
Q psy5074 7 QRFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFK 84 (204)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~ 84 (204)
+.....+....|.|.++++ .|++..+ ........++..++.+++|+++||+|||+.+........+......... .
T Consensus 269 ~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~--~ 346 (467)
T PRK09556 269 FLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQH--A 346 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHh--c
Confidence 3334445677889988765 7888765 6777778888999999999999999999877655443333222222111 0
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHH-HHHHHHHHhHHHHH-------
Q psy5074 85 NQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWS-CLFLVSKVFMDLID------- 156 (204)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-~~~~~~~~~~~l~~------- 156 (204)
...+.........+.. ..+..........|.+|++.|+++.|+.+..+++ ++.++|.+.+++.+
T Consensus 347 -------~~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~ 418 (467)
T PRK09556 347 -------TSEYMYLASLFALGFL-VFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTP 418 (467)
T ss_pred -------CcHHHHHHHHHHHHHH-HhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccc
Confidence 1222222222222211 1111112235667999999999999999999997 66899999999999
Q ss_pred -----hhchhHHHHHHHHHHHHHHHHHhh
Q psy5074 157 -----TVGSAATYGLLGLICTLGAVFVYT 180 (204)
Q Consensus 157 -----~~g~~~~~~~~~~~~~i~~~~~~~ 180 (204)
..+|+..|.+..+..+++.+..++
T Consensus 419 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 419 IFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred cccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 578988888877777776555443
No 56
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.69 E-value=2.1e-15 Score=118.66 Aligned_cols=172 Identities=12% Similarity=0.004 Sum_probs=126.1
Q ss_pred hHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCC
Q psy5074 13 SALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDM 90 (204)
Q Consensus 13 ~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (204)
.....+.|.+.++ .|.+... ........++.+++.++.+++.||.++|+.+..+..+..+..+.....
T Consensus 240 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~---------- 309 (417)
T PRK10489 240 SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM---------- 309 (417)
T ss_pred HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc----------
Confidence 3455677888887 7888765 677778888899999999999999888877777766666655544332
Q ss_pred CCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHH
Q psy5074 91 QDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLI 170 (204)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~ 170 (204)
+..+.......+.+.+.+. ..+...++..|..|++.|+++.++.+....++..+++.+.+.+.+..|.+..+...+..
T Consensus 310 -~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~ 387 (417)
T PRK10489 310 -PMWILAVLCLALFGYLSAI-SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFG 387 (417)
T ss_pred -chHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHH
Confidence 1222222222333333222 23345578899999999999999999999999999999999999999988888777777
Q ss_pred HHHHHHHHhhcccCCCCCCHHHHHHH
Q psy5074 171 CTLGAVFVYTRVPETKNKSFEAIQAE 196 (204)
Q Consensus 171 ~~i~~~~~~~~~~e~~~~~~~~~~~~ 196 (204)
..+..++.....||+|++++||.|++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (417)
T PRK10489 388 LLIIGVLLLLVLGELRRFRQTPPEVD 413 (417)
T ss_pred HHHHHHHHHHhcccccccccccccCC
Confidence 77766666666899988887776554
No 57
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.69 E-value=3.9e-15 Score=116.31 Aligned_cols=157 Identities=12% Similarity=0.136 Sum_probs=114.2
Q ss_pred hHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCC
Q psy5074 13 SALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQ 91 (204)
Q Consensus 13 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (204)
.......+.+.++++.+... .+......+...+..++.|+++||+|||++++++..+..+..+.+....
T Consensus 20 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~---------- 89 (393)
T PRK11195 20 NALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI---------- 89 (393)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH----------
Confidence 34455566667788877665 7888888899999999999999999999999999988887776654431
Q ss_pred CccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHH
Q psy5074 92 DYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLIC 171 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 171 (204)
. . +....+.+.+ .....|...+++.|++|+++|+++.++.+....++..++|.+.+.+.+.. |+..+.+.+...
T Consensus 90 -~-~--~~~r~l~G~~-~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~ 163 (393)
T PRK11195 90 -H-P--LLAYGLVGIG-AAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIY 163 (393)
T ss_pred -H-H--HHHHHHHHHH-HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 1 1 2222233333 33455777889999999999999999999999999999999999988753 656655554444
Q ss_pred HHHHHHHhhcccCCC
Q psy5074 172 TLGAVFVYTRVPETK 186 (204)
Q Consensus 172 ~i~~~~~~~~~~e~~ 186 (204)
++.. ...+.+||++
T Consensus 164 ~~~~-~~~~~l~~~~ 177 (393)
T PRK11195 164 LLAA-LFNLFIPRLG 177 (393)
T ss_pred HHHH-HHHhcCCCCc
Confidence 3333 3334467653
No 58
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.68 E-value=3.6e-15 Score=116.88 Aligned_cols=171 Identities=7% Similarity=-0.036 Sum_probs=112.2
Q ss_pred HHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheee
Q psy5074 6 FQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFK 84 (204)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~ 84 (204)
+....+.+....+.|.+.++.|.+.++ +.......++..++.++.|+++||+|||+.+..+..+..++...........
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~ 102 (402)
T TIGR00897 23 VVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGH 102 (402)
T ss_pred HHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 334444455566778888889998766 8888889999999999999999999999999998888887765443211000
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHH-HHHHHHhHHHHHhhchhHH
Q psy5074 85 NQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCL-FLVSKVFMDLIDTVGSAAT 163 (204)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~g~~~~ 163 (204)
...+.......+.+.+.+. ..+.......|.+|+++|+++.|+.+....++. .++|.+.+++.+..||+..
T Consensus 103 -------~~~~~l~~~~~i~G~g~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~ 174 (402)
T TIGR00897 103 -------ANYPLILLFYGIRGLGYPL-FAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNT 174 (402)
T ss_pred -------ccHHHHHHHHHHHHcchHH-HHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHH
Confidence 1122222222332222222 223334567788999999999999999988885 5788888888887886544
Q ss_pred HHHHHHHHHHHHHHHhhcccC
Q psy5074 164 YGLLGLICTLGAVFVYTRVPE 184 (204)
Q Consensus 164 ~~~~~~~~~i~~~~~~~~~~e 184 (204)
++.......+..+...+..+|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~ 195 (402)
T TIGR00897 175 LWSALAFVLTGGVIALFSNKD 195 (402)
T ss_pred HHHHHHHHHHHHHHHHhccCC
Confidence 443333333333333333343
No 59
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.68 E-value=2.8e-15 Score=117.23 Aligned_cols=165 Identities=12% Similarity=-0.026 Sum_probs=115.9
Q ss_pred HHHHhhChhHHHHhHHHHH-HhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhe
Q psy5074 5 TFQRFSGVSALIYYTVDIF-RNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFV 82 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~ 82 (204)
.+....+.......+|.+. +++|.+..+ ++......++..+++++.|+++||+|||++++.+.....+..........
T Consensus 24 ~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~ 103 (399)
T PRK05122 24 TFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGL 103 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhh
Confidence 3444445555666777654 568888776 88889999999999999999999999999999998888776655543321
Q ss_pred eecCCCCCCCccH-HHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchh
Q psy5074 83 FKNQGYDMQDYSW-IPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSA 161 (204)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 161 (204)
..+.. .... ..+....+.+.+.+. ..+....+..|..|+|+|+++.++.......+..+++.+.+.+.+..||+
T Consensus 104 ~~~~~----~~~~~~l~~~r~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~ 178 (399)
T PRK05122 104 LAAWP----VLSLLLLLLGRLLLGIGESL-AGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLA 178 (399)
T ss_pred hhccc----hhHHHHHHHHHHHHHhhHHh-hcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHH
Confidence 11000 0112 222233333333332 34455577889999999999999988888888889999999999999998
Q ss_pred HHHHHHHHHHHHH
Q psy5074 162 ATYGLLGLICTLG 174 (204)
Q Consensus 162 ~~~~~~~~~~~i~ 174 (204)
..+.+.....++.
T Consensus 179 ~~~~~~~~~~~~~ 191 (399)
T PRK05122 179 GLGLLIMLLALLG 191 (399)
T ss_pred HHHHHHHHHHHHH
Confidence 8776655554433
No 60
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.68 E-value=5e-15 Score=117.59 Aligned_cols=159 Identities=14% Similarity=0.085 Sum_probs=115.9
Q ss_pred HhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhc-CchHHHHHhhHHHHHHHHHHHHhheee
Q psy5074 8 RFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRL-GRRFLLLTSEITMAFCQLLLVAYFVFK 84 (204)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~i~~~~~~~~~~~~ 84 (204)
.-...|.+..++|.++.+ +|++..+ ............++.+++|+++||+ ||||.+.++.++..++...+....
T Consensus 21 e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~--- 97 (493)
T PRK15462 21 EYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE--- 97 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh---
Confidence 444567777888888765 6888765 6677777778889999999999999 999999999988888876554321
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchh--hhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhH
Q psy5074 85 NQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLE--AKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAA 162 (204)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 162 (204)
...........+...+.+. ..+...++.+|.+|++ +|.++.++.+...++|+.++|.+.+++.+..||+.
T Consensus 98 -------~~~~~~~l~l~li~iG~G~-~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~ 169 (493)
T PRK15462 98 -------IHPSFLYLSLAIIVCGYGL-FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAM 169 (493)
T ss_pred -------cchhHHHHHHHHHHHhccc-ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHH
Confidence 0111122222222222222 2345567899999986 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy5074 163 TYGLLGLICTLGAVF 177 (204)
Q Consensus 163 ~~~~~~~~~~i~~~~ 177 (204)
.|...++..+++.+.
T Consensus 170 ~F~iaaigm~l~li~ 184 (493)
T PRK15462 170 GFGLAAVGMIAGLVI 184 (493)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998766544444433
No 61
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.68 E-value=7.7e-16 Score=122.83 Aligned_cols=164 Identities=10% Similarity=-0.082 Sum_probs=119.3
Q ss_pred HHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCC
Q psy5074 14 ALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQD 92 (204)
Q Consensus 14 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (204)
.+....|.+.+++|.+..+ ++......++..+++++.|+++||+|||+++..+.+..++.....+....... +
T Consensus 47 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~------~ 120 (467)
T PRK09556 47 NFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGS------V 120 (467)
T ss_pred ChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhccc------c
Confidence 3445578888999998877 88888899999999999999999999999998888887777666554211100 1
Q ss_pred ccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhh---chhHHHHHHHH
Q psy5074 93 YSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV---GSAATYGLLGL 169 (204)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---g~~~~~~~~~~ 169 (204)
+.+..+....+.+.+.+. ..|....+++|++|+++|+++.++......+|..+++.+..++.... +|+..|.+.++
T Consensus 121 ~~~~l~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~ 199 (467)
T PRK09556 121 SLGLMIALWALSGFFQST-GGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSI 199 (467)
T ss_pred hHHHHHHHHHHHHHHHhc-cchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence 223333333344444343 34566689999999999999999999999999999888877666543 58877777777
Q ss_pred HHHHHHHHHhhcccC
Q psy5074 170 ICTLGAVFVYTRVPE 184 (204)
Q Consensus 170 ~~~i~~~~~~~~~~e 184 (204)
+.++..+..+++.+|
T Consensus 200 ~~~~~~i~~~~~~~~ 214 (467)
T PRK09556 200 IALIIGFIGLRYGSD 214 (467)
T ss_pred HHHHHHHHHHHhCCC
Confidence 766665555554444
No 62
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.68 E-value=9.7e-16 Score=122.18 Aligned_cols=151 Identities=7% Similarity=-0.027 Sum_probs=113.3
Q ss_pred hhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHH
Q psy5074 25 NAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCT 103 (204)
Q Consensus 25 ~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (204)
+++++..+ +.......++..+++++.|+++||+|||+.+..+.++..+..++...... ...+..++...+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~~ 140 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG---------GGIALVVFCRVI 140 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH---------cCchHHHHHHHH
Confidence 34555544 67788888999999999999999999999999988888777666543211 112233333333
Q ss_pred HHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhh-chhHHHHHHHHHHHHHHHHHhhcc
Q psy5074 104 IVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV-GSAATYGLLGLICTLGAVFVYTRV 182 (204)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~~~~~~~~i~~~~~~~~~ 182 (204)
.+ .......+....+.+|++|+++|+++.++......+|..+++.+.+.+.+.. +|+..|++.+++.++..+..+...
T Consensus 141 ~G-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~ 219 (465)
T TIGR00894 141 QG-LAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFP 219 (465)
T ss_pred HH-HhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHh
Confidence 33 3333445666789999999999999999999999999999999999998884 999999988888777766665555
Q ss_pred cCC
Q psy5074 183 PET 185 (204)
Q Consensus 183 ~e~ 185 (204)
||+
T Consensus 220 ~~~ 222 (465)
T TIGR00894 220 ADD 222 (465)
T ss_pred cCC
Confidence 554
No 63
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.68 E-value=1.1e-14 Score=114.74 Aligned_cols=167 Identities=10% Similarity=0.008 Sum_probs=118.7
Q ss_pred HHHHhHHHHHHhhCCCC--------Ch-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheee
Q psy5074 14 ALIYYTVDIFRNAGTRI--------AP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFK 84 (204)
Q Consensus 14 ~~~~~~~~~~~~~g~~~--------~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~ 84 (204)
....+.|.+.++.|.+. +. .....+..+..+++.++.++++||+|||+++.++.+...+............
T Consensus 226 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~ 305 (418)
T TIGR00889 226 ITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEY 305 (418)
T ss_pred HHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcch
Confidence 34455676777766543 22 5666777778889999999999999999999999888877765554421000
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHH-HHHHHHHHHHHHHhHHHHHhh-----
Q psy5074 85 NQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLM-CYSWSCLFLVSKVFMDLIDTV----- 158 (204)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~----- 158 (204)
...+..+....+.+...+. ..+....+++|.+|++.|+++.++.+ ....++..++|.+.+++.+..
T Consensus 306 -------~~~~~l~l~~~l~g~~~~~-~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~ 377 (418)
T TIGR00889 306 -------FGYALLFLSMIVYGCAFDF-FNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGT 377 (418)
T ss_pred -------hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccC
Confidence 0112222223333333332 23455578899999999999999997 567789999999999999874
Q ss_pred -chhHHHHHHHHHHHHHHHHHhhcccCCCCC
Q psy5074 159 -GSAATYGLLGLICTLGAVFVYTRVPETKNK 188 (204)
Q Consensus 159 -g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~ 188 (204)
||+..|.+.++..++..+..+++.||+++.
T Consensus 378 ~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 378 FDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 588888888888888888888878887543
No 64
>PRK12382 putative transporter; Provisional
Probab=99.67 E-value=4.2e-15 Score=116.04 Aligned_cols=157 Identities=10% Similarity=-0.118 Sum_probs=106.5
Q ss_pred ChhHHHHhHHHH-HHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCC
Q psy5074 11 GVSALIYYTVDI-FRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGY 88 (204)
Q Consensus 11 ~~~~~~~~~~~~-~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (204)
+.......+|.+ .+++|.|..+ +.......+...+++++.|+++||+|||+.++.+.+...++.+............
T Consensus 30 ~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~- 108 (392)
T PRK12382 30 TVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSA- 108 (392)
T ss_pred HHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccch-
Confidence 334444555554 4678998877 8888999999999999999999999999999988877766544332221110000
Q ss_pred CCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHH
Q psy5074 89 DMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLG 168 (204)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 168 (204)
..+.+..++...+.+.+.+. ..+....+..|.+|+|+|+++.++.+.....+..++|.+.+.+.+..||+..+.+..
T Consensus 109 --~~~~~~l~~~r~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~ 185 (392)
T PRK12382 109 --PFKFALLVVGRLILGFGESQ-LLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTM 185 (392)
T ss_pred --hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 00112222333333333332 233445677899999999999999988888899999999999988889987655444
Q ss_pred HHH
Q psy5074 169 LIC 171 (204)
Q Consensus 169 ~~~ 171 (204)
...
T Consensus 186 ~~~ 188 (392)
T PRK12382 186 VLP 188 (392)
T ss_pred HHH
Confidence 433
No 65
>KOG0253|consensus
Probab=99.67 E-value=2e-15 Score=113.03 Aligned_cols=144 Identities=15% Similarity=0.140 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcC
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGI 112 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (204)
..-..+..+..+.|.++.+++.||+|||+.+..+.++++++.++..... .........+....+...++
T Consensus 384 YrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~-----------~rn~~tvllf~arafisg~f 452 (528)
T KOG0253|consen 384 YRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK-----------TRNAYTVLLFTARAFISGAF 452 (528)
T ss_pred HHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc-----------CcchhHHHHHHHHHHHhchh
Confidence 3445677888999999999999999999999999999999988877663 22333444455555555555
Q ss_pred ccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHHHHHHHhhcccCCCCCCH
Q psy5074 113 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTLGAVFVYTRVPETKNKSF 190 (204)
Q Consensus 113 ~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~ 190 (204)
. +.++|..|++|++.|+++.|....++++|+++.|.+. +.....-..+..+++...+++.+...++.-|||+|+.
T Consensus 453 q-vaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 453 Q-VAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred e-EEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 4 7789999999999999999999999999999999998 3333333356678888888888888776669998864
No 66
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.67 E-value=5.5e-15 Score=118.04 Aligned_cols=160 Identities=11% Similarity=0.031 Sum_probs=121.1
Q ss_pred HHHHhhChhHHHHhHHHHHHh---hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhh-cCchHHHHHhhHHHHHHHHHHHH
Q psy5074 5 TFQRFSGVSALIYYTVDIFRN---AGTRIAP-STASIIVGAVQVVVSLLSSLLIDR-LGRRFLLLTSEITMAFCQLLLVA 79 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~---~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~i~~~~~~~ 79 (204)
.+.+-.+++....++|.++++ +|++..+ ............++++++|+++|| +|||+.+.++..+..++...+..
T Consensus 19 ~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~ 98 (475)
T TIGR00924 19 ELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM 98 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh
Confidence 444556677788888888765 6887766 788888888999999999999999 89999999999998888877765
Q ss_pred hheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhh---hHhHhHHHHHHHHHHHHHHHHHhHHHHH
Q psy5074 80 YFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEA---KLWSSSLLMCYSWSCLFLVSKVFMDLID 156 (204)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 156 (204)
. ...+.......+.+.+.+ ...+....+.+|.+|+++ |+++.++.+...++|..++|.+.+++.+
T Consensus 99 ~-----------~~~~~~~~~~~l~g~g~g-~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~ 166 (475)
T TIGR00924 99 S-----------IYPDLIFYGLGTIAVGSG-LFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE 166 (475)
T ss_pred c-----------ccHhHHHHHHHHHHhccc-cccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH
Confidence 4 122222223333333222 234566678889998754 8899999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHH
Q psy5074 157 TVGSAATYGLLGLICTLGAV 176 (204)
Q Consensus 157 ~~g~~~~~~~~~~~~~i~~~ 176 (204)
..||+..|...++..+++.+
T Consensus 167 ~~g~~~~f~~~~~~~~~~~l 186 (475)
T TIGR00924 167 NYGYHVGFNLAAVGMVIGLL 186 (475)
T ss_pred hcChHHHHHHHHHHHHHHHH
Confidence 89999998877655544433
No 67
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.67 E-value=5.3e-15 Score=118.36 Aligned_cols=152 Identities=13% Similarity=0.034 Sum_probs=111.1
Q ss_pred HhhChhHHHHhHHHHHH-hhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhh-cCchHHHHHhhHHHHHHHHHHHHhheee
Q psy5074 8 RFSGVSALIYYTVDIFR-NAGTRIAP-STASIIVGAVQVVVSLLSSLLIDR-LGRRFLLLTSEITMAFCQLLLVAYFVFK 84 (204)
Q Consensus 8 ~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~i~~~~~~~~~~~~ 84 (204)
.-.++|....+++.+++ ++|.+.++ .+..........+..+++|+++|| +||||.++++.++..++.+.+.....
T Consensus 26 er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~-- 103 (489)
T PRK10207 26 ERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLL-- 103 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 34555666666666654 57888765 666666666677778899999999 99999999999999999888776521
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchh--hhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhH
Q psy5074 85 NQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLE--AKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAA 162 (204)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 162 (204)
..........+...+.+ ...|....++.|.+|++ +|+++.++.+...++|..++|.+.+++.+..||++
T Consensus 104 --------~~~ll~~~~~l~~ig~g-~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~ 174 (489)
T PRK10207 104 --------KPDLIFIALGTIAVGNG-LFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSV 174 (489)
T ss_pred --------chhHHHHHHHHHHhccc-cccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHH
Confidence 11222222333322222 23456668999999887 45788999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy5074 163 TYGLLGLI 170 (204)
Q Consensus 163 ~~~~~~~~ 170 (204)
.|++.++.
T Consensus 175 ~F~i~~i~ 182 (489)
T PRK10207 175 TYNLCGAG 182 (489)
T ss_pred HHHHHHHH
Confidence 98875443
No 68
>PRK15075 citrate-proton symporter; Provisional
Probab=99.67 E-value=5.8e-15 Score=116.78 Aligned_cols=163 Identities=14% Similarity=0.011 Sum_probs=106.9
Q ss_pred HHHHHHhhChhHHHHhHHHHHHhhCCCCCh-h-HHHHH-----HHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHH
Q psy5074 3 LMTFQRFSGVSALIYYTVDIFRNAGTRIAP-S-TASII-----VGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQL 75 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~-~~~~~-----~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~ 75 (204)
+..+.+......+....|.+.++++.+..+ . ..... ..+...+++++.|+++||+|||+.++.+.....++..
T Consensus 22 ~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~ 101 (434)
T PRK15075 22 SGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTL 101 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Confidence 345566666677889999999999877644 2 22211 1222347889999999999999999999999998888
Q ss_pred HHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHH-
Q psy5074 76 LLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDL- 154 (204)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l- 154 (204)
.+.+..++..... ......++...+.+.+.+. ..+....+.+|++|+++|+++.++.....+++..+++.+.+.+
T Consensus 102 l~~~~~~~~~~~~---~~~~~l~~~R~l~G~~~g~-~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~ 177 (434)
T PRK15075 102 LIAFVPGYATIGL---AAPLLVLLGRLLQGFSAGV-ELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLN 177 (434)
T ss_pred HHHhCCcHHHHHH---HHHHHHHHHHHHhhccccc-cHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876632110000 0000112222222222222 2334557899999999999999998888777777666665554
Q ss_pred -------HHhhchhHHHHHHHH
Q psy5074 155 -------IDTVGSAATYGLLGL 169 (204)
Q Consensus 155 -------~~~~g~~~~~~~~~~ 169 (204)
.+..|||+.|++...
T Consensus 178 ~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 178 QWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HhCCHHHHhccchHHHHHHHHH
Confidence 356799998876443
No 69
>TIGR00898 2A0119 cation transport protein.
Probab=99.67 E-value=2.5e-15 Score=120.94 Aligned_cols=154 Identities=17% Similarity=0.054 Sum_probs=114.4
Q ss_pred HhHHHHHHhhCCC---CCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCC
Q psy5074 17 YYTVDIFRNAGTR---IAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQD 92 (204)
Q Consensus 17 ~~~~~~~~~~g~~---~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (204)
.+.|.+.+++|++ ... .+......++..+++++.|+++||+|||+.++++.++..++.+...+. +
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~-----------~ 178 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS-----------P 178 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc-----------c
Confidence 3456666777886 444 788888999999999999999999999999999998888888777655 1
Q ss_pred ccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHH
Q psy5074 93 YSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICT 172 (204)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~ 172 (204)
..+...+...+.+ ....+..+....++.|.+|+++|+.+.++......+|..+++.+...+.+ ||+.+.+.++..+
T Consensus 179 ~~~~~~~~r~l~G-~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~ 254 (505)
T TIGR00898 179 NYTVFLVFRLLVG-MGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTF 254 (505)
T ss_pred cHHHHHHHHHHHH-hhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHH
Confidence 2233333333333 32333355677899999999999999999988888888888876655433 9988888887777
Q ss_pred HHHHHHhhcccCCC
Q psy5074 173 LGAVFVYTRVPETK 186 (204)
Q Consensus 173 i~~~~~~~~~~e~~ 186 (204)
+..+.. +++||++
T Consensus 255 ~~~~~~-~~~~esp 267 (505)
T TIGR00898 255 LFFLLS-WFVPESP 267 (505)
T ss_pred HHHHHH-HhcCCCh
Confidence 666555 4578863
No 70
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.67 E-value=8.2e-15 Score=114.83 Aligned_cols=172 Identities=17% Similarity=0.160 Sum_probs=125.3
Q ss_pred HHHHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhc-----CchH-HHHHhhHHHHHHHH
Q psy5074 3 LMTFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRL-----GRRF-LLLTSEITMAFCQL 75 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~-~~~~~~~~~~i~~~ 75 (204)
.-++.|.........-+|.++++.|++.++ +........ .+..+++|+++||+ |||| +++.+..+.+++..
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~ 83 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA 83 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH
Confidence 446677777788888999999999999877 665554443 58899999999999 7876 67777777777777
Q ss_pred HHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHH
Q psy5074 76 LLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI 155 (204)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~ 155 (204)
.+.+... ..+...+...............+...+++.|..|+|+|+++.++......++..+++.+...+.
T Consensus 84 ~l~~~~~---------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~ 154 (402)
T PRK11902 84 AMAFCPP---------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLA 154 (402)
T ss_pred HHHhcCc---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 6655421 1222223322222233344455677789999999999999999999988999999999888888
Q ss_pred Hh-hchhHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 156 DT-VGSAATYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 156 ~~-~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
+. .||+..|.+.++..++..+.. +..||++
T Consensus 155 ~~~~gw~~~f~i~a~~~l~~~l~~-~~~~e~~ 185 (402)
T PRK11902 155 DRVLGWGNTYLLMAGLMLAGALTT-LWAPEPE 185 (402)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHH-HhcCCCc
Confidence 75 499999988887776655543 4466653
No 71
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.67 E-value=5.3e-15 Score=117.56 Aligned_cols=162 Identities=15% Similarity=0.009 Sum_probs=115.8
Q ss_pred HHHhHHHHHHhhCCC--------CCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeec
Q psy5074 15 LIYYTVDIFRNAGTR--------IAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKN 85 (204)
Q Consensus 15 ~~~~~~~~~~~~g~~--------~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~ 85 (204)
.....|.+..+.+.+ ..+ .+......++..+++++.|+++||+|||+.++.+..+..++..+.......
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~-- 124 (481)
T TIGR00879 47 IGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFA-- 124 (481)
T ss_pred hhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 444455555665555 444 788888999999999999999999999999999998888887777544211
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHh---HHHHHhhchhH
Q psy5074 86 QGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVF---MDLIDTVGSAA 162 (204)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~g~~~ 162 (204)
...+..+....+.+.+.+. ..+....++.|.+|+++|+++.++.+....+|..+++.+. ....+..+||+
T Consensus 125 ------~~~~~~~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~ 197 (481)
T TIGR00879 125 ------LSVEMLIVGRVLLGIGVGI-ASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRI 197 (481)
T ss_pred ------cchHHHHHHHHHHHhhhhH-HHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHH
Confidence 1112333333444444333 3456678999999999999999999999999999999888 55446678999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 163 TYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 163 ~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
.|.+.+...++.. ...+++||++
T Consensus 198 ~f~~~~~~~~~~~-~~~~~l~~~~ 220 (481)
T TIGR00879 198 PLGLQLIPAGLLF-LGLFFLPESP 220 (481)
T ss_pred HHHHHHHHHHHHH-HHHhcCCCCh
Confidence 9888555554444 3344477753
No 72
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.66 E-value=5.2e-15 Score=116.42 Aligned_cols=172 Identities=14% Similarity=0.041 Sum_probs=121.7
Q ss_pred HHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheee
Q psy5074 6 FQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFK 84 (204)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~ 84 (204)
+....+........|.+.++.+.+..+ ++......++..+++++.|+++||+|||+.+..+.....++...........
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 106 (417)
T PRK10489 27 FISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLP 106 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcC
Confidence 344455566677888888888777655 8888889999999999999999999999998888777766655543211100
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHH
Q psy5074 85 NQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATY 164 (204)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 164 (204)
. +..+.......+.+.+.+.. .+....+..|..|+++|+++.++.+....++..++|.+.+.+.+..+|++.+
T Consensus 107 ~------~~~~~l~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~ 179 (417)
T PRK10489 107 E------PSLLAIYLLGLWDGFFGSLG-VTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNY 179 (417)
T ss_pred C------CcHHHHHHHHHHHHHHHHHH-HHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHH
Confidence 0 12222233333333333322 2344567889999999999999999999999999999999999988998888
Q ss_pred HHHHHHHHHHHHHHhhcccCC
Q psy5074 165 GLLGLICTLGAVFVYTRVPET 185 (204)
Q Consensus 165 ~~~~~~~~i~~~~~~~~~~e~ 185 (204)
.+.+...++..+.. +..||+
T Consensus 180 ~~~~~~~~~~~~~~-~~l~~~ 199 (417)
T PRK10489 180 GLAAAGTFITLLPL-LRLPAL 199 (417)
T ss_pred HHHHHHHHHHHHHH-HhCCCC
Confidence 77666665554443 345654
No 73
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.66 E-value=9.4e-15 Score=112.62 Aligned_cols=163 Identities=14% Similarity=0.086 Sum_probs=113.4
Q ss_pred hHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhc-----CchHHH-HHhhHHHHHHHHHHHHhheeec
Q psy5074 13 SALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRL-----GRRFLL-LTSEITMAFCQLLLVAYFVFKN 85 (204)
Q Consensus 13 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~-~~~~~~~~i~~~~~~~~~~~~~ 85 (204)
..+..-.|.+.++.|++.++ +..... .....+ .+++|.++||+ ||||.+ +.+.+..++....+.+...
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~--- 79 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP--- 79 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc---
Confidence 45566788999999999876 555433 343443 88999999998 898875 5566666666555544321
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc------
Q psy5074 86 QGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG------ 159 (204)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g------ 159 (204)
..+...+...............+...+++.|.+|+|+|+++.++......+|..+++.+.+.+.+..+
T Consensus 80 ------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~ 153 (356)
T TIGR00901 80 ------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLI 153 (356)
T ss_pred ------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 11222222222222222333345667889999999999999999999999999999999999888888
Q ss_pred --hhHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 160 --SAATYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 160 --~~~~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
||..|.+.++..++..+..++..||++
T Consensus 154 ~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 154 TLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999998888877776655555467753
No 74
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.66 E-value=9.9e-15 Score=114.59 Aligned_cols=167 Identities=8% Similarity=-0.007 Sum_probs=120.4
Q ss_pred hhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCC
Q psy5074 9 FSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQG 87 (204)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (204)
...........|.+.+++|.+..+ ++......++..+++++.|++.||+|||+.++.+..+.+++..........
T Consensus 16 G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~---- 91 (410)
T TIGR00885 16 GFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEI---- 91 (410)
T ss_pred HHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 333344557788888889998866 888999999999999999999999999999999999988887775433211
Q ss_pred CCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH-----------
Q psy5074 88 YDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID----------- 156 (204)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~----------- 156 (204)
++.+..+....+.+.+.+.. .+....+..|..|+++|++..++.+....+|..++|.+.+.+..
T Consensus 92 ----~~~~~~l~~~~l~G~g~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~ 166 (410)
T TIGR00885 92 ----MNYTLFLVGLFILTAGLGFL-ETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVL 166 (410)
T ss_pred ----ccHHHHHHHHHHHHhhHHHH-HhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhh
Confidence 11222333333334443332 23444678888999999999999999999999999998877642
Q ss_pred ---------------hhchhHHHHHHHHHHHHHHHHHhh-cccC
Q psy5074 157 ---------------TVGSAATYGLLGLICTLGAVFVYT-RVPE 184 (204)
Q Consensus 157 ---------------~~g~~~~~~~~~~~~~i~~~~~~~-~~~e 184 (204)
..+|+.+|.+.+.+.++..+...+ ..||
T Consensus 167 ~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~ 210 (410)
T TIGR00885 167 DKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPA 210 (410)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 246999998887776665544432 2454
No 75
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.66 E-value=2.2e-14 Score=113.10 Aligned_cols=139 Identities=14% Similarity=0.102 Sum_probs=99.3
Q ss_pred hHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCC
Q psy5074 13 SALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQ 91 (204)
Q Consensus 13 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (204)
+.+..+.|.++++.|.+.+. ........++.+++.++.+++.||+|||+.+..+.....+.........
T Consensus 248 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~---------- 317 (426)
T PRK12307 248 WPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIP---------- 317 (426)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc----------
Confidence 34567788888888887655 6666777888999999999999999999988877766655544433221
Q ss_pred CccHHHHHHHHHHHHH-HHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhH
Q psy5074 92 DYSWIPIFSVCTIVAI-FRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAA 162 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 162 (204)
........ ....... ...+..+....++.|.+|++.|+++.|+.+....+++.++|.+.+++.+..|...
T Consensus 318 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~ 388 (426)
T PRK12307 318 QDNYLLLG-ACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGA 388 (426)
T ss_pred cccHHHHH-HHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHH
Confidence 11122111 1222111 1122233455678999999999999999999999999999999999999888644
No 76
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.65 E-value=8.9e-15 Score=114.65 Aligned_cols=163 Identities=12% Similarity=0.030 Sum_probs=112.6
Q ss_pred HHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheee
Q psy5074 6 FQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFK 84 (204)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~ 84 (204)
+......+....|.|.+.++.|.+... ........++.+++.++.|+++||+|||+.+..+.....++.......
T Consensus 230 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---- 305 (406)
T PRK11551 230 FFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA---- 305 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc----
Confidence 344445556677889999988888765 777778888999999999999999999998887666555554444332
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc-hhHH
Q psy5074 85 NQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAAT 163 (204)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~ 163 (204)
+..+.........+... .+..+....+..|.+|+++|+++.++.+....++..++|.+.+.+.+..+ +...
T Consensus 306 -------~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~ 377 (406)
T PRK11551 306 -------PSFAGMLLAGFAAGLFV-VGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGV 377 (406)
T ss_pred -------CcHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHH
Confidence 12222222222222222 22344566788999999999999999999999999999999999988654 4344
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy5074 164 YGLLGLICTLGAVFVYT 180 (204)
Q Consensus 164 ~~~~~~~~~i~~~~~~~ 180 (204)
+.......+++.+..+.
T Consensus 378 ~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 378 IGASIPVILVAALAALL 394 (406)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 77
>TIGR00898 2A0119 cation transport protein.
Probab=99.65 E-value=1.6e-14 Score=116.30 Aligned_cols=147 Identities=20% Similarity=0.210 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcC
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGI 112 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (204)
........+..+++.++.++++||+|||+.+.++.++.+++.+.+..... ...+.......+...+... .
T Consensus 358 ~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~ 427 (505)
T TIGR00898 358 YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV---------DLYFLRTALAVLGKFGITS-A 427 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC---------CchHHHHHHHHHHHHHHHH-H
Confidence 44455667778889999999999999999999988888887776665421 1113333333333333332 2
Q ss_pred ccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHHHHHHHhhcccCCCCCCHHH
Q psy5074 113 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTLGAVFVYTRVPETKNKSFEA 192 (204)
Q Consensus 113 ~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~ 192 (204)
.+..+.+.+|.+|++.|+++.|+.+....+|+.++|.+.+ + +..++..++.+++...+++.+..+ ++|||++++++|
T Consensus 428 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~lpet~~~~l~~ 504 (505)
T TIGR00898 428 FQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTL-FLPETKGVPLPE 504 (505)
T ss_pred HHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHH-cCcCCCCCCCCC
Confidence 3466789999999999999999999999999999999988 4 444555677777777777766655 479999876643
No 78
>PRK09952 shikimate transporter; Provisional
Probab=99.65 E-value=2.6e-14 Score=113.19 Aligned_cols=143 Identities=15% Similarity=0.061 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhh
Q psy5074 39 VGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWF 118 (204)
Q Consensus 39 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (204)
..++..+++++.|+++||+|||+.+..+..+.+++..+.++..++.+... ...+..+....+.+.+.+ +..+....
T Consensus 73 ~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~R~l~G~~~g-~~~~~~~~ 148 (438)
T PRK09952 73 GFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGW---WAPVLLVTLRAIQGFAVG-GEWGGAAL 148 (438)
T ss_pred HHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHH---HHHHHHHHHHHHHHhhhc-ccHHHHHH
Confidence 44556788899999999999999999999999999888887632210000 000012222223333322 23345567
Q ss_pred hhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHH--------HhhchhHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 119 MMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI--------DTVGSAATYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 119 ~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
+++|.+|+++|++..+..+....+|..+++.+...+. ..+|||..|++.++..++. +......||++
T Consensus 149 ~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~ 223 (438)
T PRK09952 149 LAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESA 223 (438)
T ss_pred HHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCCh
Confidence 9999999999999999888888888777776655544 2479999998776655443 22223356654
No 79
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.65 E-value=1.2e-14 Score=96.83 Aligned_cols=136 Identities=19% Similarity=0.115 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchh
Q psy5074 38 IVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPW 117 (204)
Q Consensus 38 ~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (204)
...++..++.++.+++.||+|||+.+..+.....++.+..... +..+.......+.+...+. ..+...
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~-~~~~~~ 73 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-----------SNITVLIIARFLQGFGAAF-ALVAGA 73 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHH-HHHhHH
Confidence 3456778899999999999999999988888877777666543 1223333333333333332 345666
Q ss_pred hhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHHHHHHHhhcccCC
Q psy5074 118 FMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTLGAVFVYTRVPET 185 (204)
Q Consensus 118 ~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~ 185 (204)
.+..|.+|+++|+++.++.+....++..+++.+.+.+.+..+|++.+.+.+....+..+..++..||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 74 ALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 88999999999999999999999999999999999999888998888888887777777766656653
No 80
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.65 E-value=4.7e-14 Score=110.29 Aligned_cols=169 Identities=10% Similarity=-0.049 Sum_probs=120.1
Q ss_pred HhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecC
Q psy5074 8 RFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQ 86 (204)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (204)
...+.+....|.|.++++.|.+.++ .....+..++.+++.++.+++.||+|||+....+..+..++...+....
T Consensus 217 ~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~----- 291 (393)
T PRK09705 217 INGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLP----- 291 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHcc-----
Confidence 3445567778899999888888766 7778888899999999999999999999988887766666555443221
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhcccc-chhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc-hhHHH
Q psy5074 87 GYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEII-PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATY 164 (204)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~ 164 (204)
....... ..+.+.+.+. ..+.......|.. |+++|++..++.+..+.+++.++|.+.+++.+..| +...+
T Consensus 292 -----~~~~~~~--~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~ 363 (393)
T PRK09705 292 -----LQLPVLW--AMVCGLGLGG-AFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDW 363 (393)
T ss_pred -----chHHHHH--HHHHHHhccc-hHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHH
Confidence 1111111 1122222222 2233434445555 57889999999999999999999999999999886 66667
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCC
Q psy5074 165 GLLGLICTLGAVFVYTRVPETKNKS 189 (204)
Q Consensus 165 ~~~~~~~~i~~~~~~~~~~e~~~~~ 189 (204)
.+..+..++..+..+.+.||++++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 364 AFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHHHHHHHHHhccccccch
Confidence 7777777766666667788887654
No 81
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.65 E-value=7e-14 Score=110.12 Aligned_cols=170 Identities=7% Similarity=-0.036 Sum_probs=115.6
Q ss_pred hhChhHHHHhHHHHHH-hhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecC
Q psy5074 9 FSGVSALIYYTVDIFR-NAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQ 86 (204)
Q Consensus 9 ~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (204)
+..-+......+.+.+ ++|++.++ .+...+..+.+.+..++.|++.||+|.|+++.++.....+......+..+..
T Consensus 47 F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~-- 124 (462)
T PRK15034 47 FCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNP-- 124 (462)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHccc--
Confidence 3333334444555544 68888877 7888888899999999999999999999999999999888887776542110
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHH-----H-----
Q psy5074 87 GYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI-----D----- 156 (204)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~-----~----- 156 (204)
..++..+.......+..+. ..+.....+++++|+++|+++.|+....+++|..+++.+.+.+. +
T Consensus 125 -----~~s~~~lli~r~l~Gigg~-~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~ 198 (462)
T PRK15034 125 -----NTPFGIFIVIALLCGFAGA-NFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVN 198 (462)
T ss_pred -----CCCHHHHHHHHHHHHHHHH-hHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1223333333322222233 33456678999999999999999998777788777666665543 2
Q ss_pred --------hhchhHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 157 --------TVGSAATYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 157 --------~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
..+|+.+..++..+.++..++.++..++.+
T Consensus 199 ~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~ 236 (462)
T PRK15034 199 GVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIA 236 (462)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 234666677777777777766666565543
No 82
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.65 E-value=1.4e-14 Score=114.61 Aligned_cols=169 Identities=12% Similarity=0.058 Sum_probs=109.3
Q ss_pred hChhHHHHhHHHHHH-hhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhc--CchHHH-HHhhHHHHHHHHHHHHhheee
Q psy5074 10 SGVSALIYYTVDIFR-NAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRL--GRRFLL-LTSEITMAFCQLLLVAYFVFK 84 (204)
Q Consensus 10 ~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~-~~~~~~~~i~~~~~~~~~~~~ 84 (204)
...+.+..|.|.+++ +.|++..+ ........++..++.++.|+++||+ +||+.. ........+..........
T Consensus 257 ~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-- 334 (434)
T PRK11663 257 VVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPF-- 334 (434)
T ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccc--
Confidence 334456678888884 47888766 6777788889999999999999998 333332 2222222222111111110
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHH
Q psy5074 85 NQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATY 164 (204)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 164 (204)
.............+ ....+..........|.+|++.|+++.|+.+...++|+.++|.+.+++.+..||+..|
T Consensus 335 -------~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f 406 (434)
T PRK11663 335 -------ASYVMQAACFFTIG-FFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFF 406 (434)
T ss_pred -------ccHHHHHHHHHHHH-HHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHH
Confidence 11112111111111 1111111123456789999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCC
Q psy5074 165 GLLGLICTLGAVFVYTRVPETKNK 188 (204)
Q Consensus 165 ~~~~~~~~i~~~~~~~~~~e~~~~ 188 (204)
...+++.++..+..+...++.+++
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 407 VVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchh
Confidence 888888777776665545554433
No 83
>PRK09952 shikimate transporter; Provisional
Probab=99.64 E-value=6.4e-14 Score=111.01 Aligned_cols=171 Identities=12% Similarity=0.100 Sum_probs=109.7
Q ss_pred HHhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheee
Q psy5074 7 QRFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFK 84 (204)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~ 84 (204)
.+..+.+....|.|.+.++ .|.+.+. ............++.++.|+++||+|||+.+..+.+...++...........
T Consensus 261 ~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~ 340 (438)
T PRK09952 261 CELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQ 340 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444556677788877654 6776544 3445555667788889999999999999998877666554443332211100
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHH-HHHHHHHHHhHHHHHhh--chh
Q psy5074 85 NQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSW-SCLFLVSKVFMDLIDTV--GSA 161 (204)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~--g~~ 161 (204)
...+.......+...+.+.. .+..+.+.+|.+|++.|+++.++.+..+. +++.++|.+.+++.+.. +|.
T Consensus 341 -------~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~ 412 (438)
T PRK09952 341 -------SIFWIVFFSIMLANIAHDMV-VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWH 412 (438)
T ss_pred -------ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 11222222222222333322 34567889999999999999999876655 78899999999998854 366
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 162 ATYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
..+....+..+++.+..+. .||++
T Consensus 413 ~~~~~~~~~~~i~~v~~~~-~~~~~ 436 (438)
T PRK09952 413 SVAIYLLAGCLISAMTALL-MKDNQ 436 (438)
T ss_pred HHHHHHHHHHHHHHHHHHH-ccccc
Confidence 6666666666666555543 56643
No 84
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.63 E-value=1.6e-14 Score=116.04 Aligned_cols=147 Identities=10% Similarity=-0.007 Sum_probs=105.7
Q ss_pred HHHHhHHHHHH-hhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCC
Q psy5074 14 ALIYYTVDIFR-NAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQ 91 (204)
Q Consensus 14 ~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (204)
....+.|.+++ +.|.+..+ ........++..++.++.|+++||+|||+.+..+..+..+..+......
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~---------- 362 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIG---------- 362 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc----------
Confidence 34567888885 68888766 7788888899999999999999999999998877665555443332221
Q ss_pred CccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHH
Q psy5074 92 DYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLI 170 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~ 170 (204)
...............+.+.+..+....+..|.+|+++|+++.++.+....+++.++|.+.+.+.+..|++..+...+..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~ 441 (496)
T PRK03893 363 GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS 441 (496)
T ss_pred ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 1112222222222222233334455678899999999999999999999999999999999999999987776554443
No 85
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.63 E-value=3.8e-14 Score=109.42 Aligned_cols=151 Identities=11% Similarity=-0.049 Sum_probs=110.3
Q ss_pred HHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCC
Q psy5074 14 ALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQD 92 (204)
Q Consensus 14 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (204)
....+.+.+.++.|.+.+. ........+...+++++.|+++||+|||+.+..+.....++...+..... .
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---------~ 293 (377)
T TIGR00890 223 LLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPM---------L 293 (377)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHccc---------c
Confidence 3444556666777877655 67778888899999999999999999999988888877777666554311 1
Q ss_pred ccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHH
Q psy5074 93 YSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICT 172 (204)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~ 172 (204)
................+. ..+....+.+|.+|+++|+++.++.+....++..++|.+.+.+.+..||+..+.+.+++.+
T Consensus 294 ~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~ 372 (377)
T TIGR00890 294 NDVLFLATVALVFFTWGG-TISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFAL 372 (377)
T ss_pred hhHHHHHHHHHHHHHhcc-chhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHH
Confidence 111221222222222222 2234456889999999999999999999999999999999999999999988887776665
Q ss_pred HH
Q psy5074 173 LG 174 (204)
Q Consensus 173 i~ 174 (204)
++
T Consensus 373 ~~ 374 (377)
T TIGR00890 373 TS 374 (377)
T ss_pred Hh
Confidence 54
No 86
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.62 E-value=8.4e-14 Score=110.75 Aligned_cols=167 Identities=10% Similarity=0.040 Sum_probs=105.8
Q ss_pred hChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhc--CchHHHHH-hhHHHHHHHHHHHHhheee
Q psy5074 10 SGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRL--GRRFLLLT-SEITMAFCQLLLVAYFVFK 84 (204)
Q Consensus 10 ~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~-~~~~~~i~~~~~~~~~~~~ 84 (204)
...+....|.|.++++ .|++.++ ........++.+++.++.|+++||+ +||+...+ ...+..+......... .
T Consensus 267 ~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~--~ 344 (452)
T PRK11273 267 LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNP--A 344 (452)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhc--c
Confidence 3345677899999887 5887655 6667777888889999999999999 55543322 2222222222111110 0
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHH-HHHHhHHHHHhhchhHH
Q psy5074 85 NQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFL-VSKVFMDLIDTVGSAAT 163 (204)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~g~~~~ 163 (204)
...+.........+... .+.......+..|.+|++.|+++.|+.+...++++.+ +|.+.+.+.+..||+..
T Consensus 345 -------~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~ 416 (452)
T PRK11273 345 -------GNPTVDMACMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG 416 (452)
T ss_pred -------cChHHHHHHHHHHHHHH-HhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHH
Confidence 11122222222222211 1111123346779999999999999999988888665 79999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc-ccCCC
Q psy5074 164 YGLLGLICTLGAVFVYTR-VPETK 186 (204)
Q Consensus 164 ~~~~~~~~~i~~~~~~~~-~~e~~ 186 (204)
|.+.+..++++.+....+ .+|+|
T Consensus 417 f~~~~~~~~~~~~~~~~~~~~~~~ 440 (452)
T PRK11273 417 FMVMIGGSILAVILLIVVMIGEKR 440 (452)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc
Confidence 888888777776655543 34443
No 87
>PRK15075 citrate-proton symporter; Provisional
Probab=99.62 E-value=5.9e-14 Score=111.08 Aligned_cols=145 Identities=14% Similarity=0.076 Sum_probs=96.8
Q ss_pred HhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHH-HHhheee
Q psy5074 8 RFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLL-VAYFVFK 84 (204)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~-~~~~~~~ 84 (204)
+..+.+....|.|.++++ .|++.++ .....+..++.+++.++.|+++||+|||+.++.+.....+..... .....
T Consensus 250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-- 327 (434)
T PRK15075 250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVA-- 327 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 445566778889999887 6888765 667777888889999999999999999998877654443322211 11110
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHH-HHHHHHHHhHHHHHhhchh
Q psy5074 85 NQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWS-CLFLVSKVFMDLIDTVGSA 161 (204)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~g~~ 161 (204)
+ ...........+...+.+. ..+..+.+..|.+|++.|+++.++.+..+.. ++.++|.+.+.+.+..|++
T Consensus 328 ~------~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 328 A------PSFARMLAVELWLSFLYGS-YNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred C------CchHHHHHHHHHHHHHHHH-HHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 0 1111111111222223222 2334557889999999999999997666654 5788999999999988853
No 88
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.62 E-value=5.2e-14 Score=113.10 Aligned_cols=159 Identities=13% Similarity=0.011 Sum_probs=109.3
Q ss_pred HHHhhChhHHHHhHHHHH-HhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhh-cCchHHHHHhhHHHHHHHHHHHHhhe
Q psy5074 6 FQRFSGVSALIYYTVDIF-RNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDR-LGRRFLLLTSEITMAFCQLLLVAYFV 82 (204)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~i~~~~~~~~~~ 82 (204)
+..-.+.+.+..++|.++ +++|++..+ ...............+++|+++|| +|||+.++.+..+..++...+....
T Consensus 31 ~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~- 109 (500)
T PRK09584 31 LWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG- 109 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-
Confidence 444555667777777776 558888755 444444444444555789999999 5999999999988888877666531
Q ss_pred eecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhh--hHhHhHHHHHHHHHHHHHHHHHhHHHHHhhch
Q psy5074 83 FKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEA--KLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS 160 (204)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 160 (204)
...........+.+.+.+. ..+....+..|.+|+++ |..+.++.+...++|..++|.+.+++.+..||
T Consensus 110 ---------~~~~~l~~~~~l~gig~g~-~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~ 179 (500)
T PRK09584 110 ---------HDAGIVYMGMATIAVGNGL-FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGW 179 (500)
T ss_pred ---------ccHHHHHHHHHHHHHhhhc-ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCH
Confidence 1112222222333333332 34555678999998643 45678888999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy5074 161 AATYGLLGLICTLGA 175 (204)
Q Consensus 161 ~~~~~~~~~~~~i~~ 175 (204)
++.|.+.++...++.
T Consensus 180 ~~~F~i~~i~~~i~~ 194 (500)
T PRK09584 180 SVAFALSVVGMLITV 194 (500)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999987765444433
No 89
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.62 E-value=9.1e-14 Score=106.22 Aligned_cols=164 Identities=24% Similarity=0.199 Sum_probs=129.4
Q ss_pred HHHHHhhChhHHHHhHHHHHHhh-CCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchH-HHHHhhHHHHHHHHHHHHh
Q psy5074 4 MTFQRFSGVSALIYYTVDIFRNA-GTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRF-LLLTSEITMAFCQLLLVAY 80 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~-~~~~~~~~~~i~~~~~~~~ 80 (204)
..+...........+.|.+.++. |.+..+ ........++..++.++.+++.||+|||+ .+..+.....++.......
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 262 (352)
T cd06174 183 AFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA 262 (352)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 34455566677788888888875 777665 78888889999999999999999999999 8888888888887777654
Q ss_pred heeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhch
Q psy5074 81 FVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS 160 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 160 (204)
+..+.......+.+.+.+ ...+....+..|..|+++|++..++.+....++..+++.+.+.+.+..+|
T Consensus 263 -----------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~ 330 (352)
T cd06174 263 -----------PSLALLLVALLLLGFGLG-FAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGY 330 (352)
T ss_pred -----------ccHHHHHHHHHHHHHHHh-ccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 122333333334444433 34567778999999999999999999999999999999999999998999
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q psy5074 161 AATYGLLGLICTLGAVFVY 179 (204)
Q Consensus 161 ~~~~~~~~~~~~i~~~~~~ 179 (204)
+..+.+.+.+.++..+..+
T Consensus 331 ~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 331 GGVFLILAALALLAALLLL 349 (352)
T ss_pred chHHHHHHHHHHHHHHHhe
Confidence 9988888888877766554
No 90
>KOG0252|consensus
Probab=99.62 E-value=6.1e-16 Score=118.56 Aligned_cols=178 Identities=19% Similarity=0.226 Sum_probs=133.5
Q ss_pred ChhHHHHhHHHHHHhhCCCCCh-hH-----H----HHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHh
Q psy5074 11 GVSALIYYTVDIFRNAGTRIAP-ST-----A----SIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAY 80 (204)
Q Consensus 11 ~~~~~~~~~~~~~~~~g~~~~~-~~-----~----~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~ 80 (204)
..|....++..+++..|...+. .. . ..+.....++|..+...++|+.|||+..+.+.+++.+..+.++..
T Consensus 319 afy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~ 398 (538)
T KOG0252|consen 319 AFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGP 398 (538)
T ss_pred hhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCC
Confidence 3456667777888877766543 11 1 111222223455566678999999999999999999988888766
Q ss_pred heeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH----
Q psy5074 81 FVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID---- 156 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~---- 156 (204)
++... ......+...+..++..++.+.....+.+|.||++.|+++.|+..+.+-.|++++...+.++.+
T Consensus 399 y~~~~-------~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp 471 (538)
T KOG0252|consen 399 YNQLE-------NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYP 471 (538)
T ss_pred ccccc-------ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCC
Confidence 54211 1222344445555666777777788899999999999999999999999999999999999988
Q ss_pred -hhchhHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHH
Q psy5074 157 -TVGSAATYGLLGLICTLGAVFVYTRVPETKNKSFEAIQAE 196 (204)
Q Consensus 157 -~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~ 196 (204)
..+.+..+++.+....+..+..++ +||||++++||++++
T Consensus 472 ~~~g~~~v~~i~~~~~~~gi~~T~l-~pEtk~~~leei~~e 511 (538)
T KOG0252|consen 472 PNIGVRNVFIILAGCMLLGILFTLL-IPETKGKSLEEISNE 511 (538)
T ss_pred ccccchHHHHHHHHHHHHhHheeEE-eecccccCHHHhcCh
Confidence 678888999999888888776655 789999999887544
No 91
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.62 E-value=9.5e-15 Score=117.54 Aligned_cols=153 Identities=10% Similarity=0.018 Sum_probs=112.8
Q ss_pred HHhHHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccH
Q psy5074 16 IYYTVDIFRNAGTRIAPSTASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSW 95 (204)
Q Consensus 16 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 95 (204)
..-++++.++.|-+++..++.....+...+..++.|+++|.+|||..++.+.++..++.+..+... +..
T Consensus 64 a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~-----------~~~ 132 (599)
T PF06609_consen 64 ASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ-----------NMN 132 (599)
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC-----------cHH
Confidence 344577778888776668888889999999999999999999999999999999999999888662 222
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHHHH
Q psy5074 96 IPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTLGA 175 (204)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~ 175 (204)
..+....+.+.+. +........++|+.|.|.|..+.++...........++.+...+..+.+|||.|++..+...+.+
T Consensus 133 ~~iag~~l~Gvga--G~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~ 210 (599)
T PF06609_consen 133 TFIAGMVLYGVGA--GVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIAL 210 (599)
T ss_pred HHHHHHHHHHHhh--HHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHH
Confidence 3344444443332 22334456689999999999888777655444455667777666666789999998888877776
Q ss_pred HHHhhc
Q psy5074 176 VFVYTR 181 (204)
Q Consensus 176 ~~~~~~ 181 (204)
+..+++
T Consensus 211 vl~~~f 216 (599)
T PF06609_consen 211 VLIFFF 216 (599)
T ss_pred HHHHHH
Confidence 654433
No 92
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.62 E-value=1.4e-13 Score=107.71 Aligned_cols=161 Identities=15% Similarity=0.124 Sum_probs=113.9
Q ss_pred hhHHHHhHHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCC
Q psy5074 12 VSALIYYTVDIFRNAGTRIAPSTASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQ 91 (204)
Q Consensus 12 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (204)
......+.|.+.++.|.+. .........++.+++.++.+++.||+|||+.+..+.....++.......
T Consensus 232 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~----------- 299 (399)
T PRK05122 232 FGTIATFITLYYAARGWDG-AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA----------- 299 (399)
T ss_pred HHHHHHHHHHHHHHccccc-chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 3445567777777766632 2444556677788899999999999999999888877777766555543
Q ss_pred CccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHH
Q psy5074 92 DYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLIC 171 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 171 (204)
++.+.......+.+.+.+. ..+.......|..|+++|+++.++.+....++..+++.+.+.+.+..||+..+.+.+.+.
T Consensus 300 ~~~~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 378 (399)
T PRK05122 300 PSPWMALIGAALTGFGFSL-VFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAA 378 (399)
T ss_pred ccHHHHHHHHHHHHHhHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 1223333333333333332 223444566788999999999999999999999999999999999999999888888877
Q ss_pred HHHHHHHhhcccCCC
Q psy5074 172 TLGAVFVYTRVPETK 186 (204)
Q Consensus 172 ~i~~~~~~~~~~e~~ 186 (204)
+++.+..++ .++++
T Consensus 379 ~~~~~~~~~-~~~~~ 392 (399)
T PRK05122 379 LLGLALTWL-LYRRA 392 (399)
T ss_pred HHHHHHHHH-hcccc
Confidence 777666555 44433
No 93
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.61 E-value=3e-14 Score=109.82 Aligned_cols=150 Identities=11% Similarity=0.002 Sum_probs=109.1
Q ss_pred hChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCC
Q psy5074 10 SGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGY 88 (204)
Q Consensus 10 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (204)
.+.......+|.+.+++|.+.++ ++......++..++.++.|+++||+|||+.+.++.....++.... ..
T Consensus 14 ~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~-------- 84 (355)
T TIGR00896 14 PALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA-------- 84 (355)
T ss_pred CccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh--------
Confidence 34455667889999999999877 888999999999999999999999999999998887766655544 22
Q ss_pred CCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhh--chhHHHHH
Q psy5074 89 DMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV--GSAATYGL 166 (204)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~~~ 166 (204)
++.+..+....+.+.+.+.. .+....+..|.+| ++|+++.++.+....++..+++.+.+.+.+.. +|+..|..
T Consensus 85 ---~~~~~l~~~~~~~g~g~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~ 159 (355)
T TIGR00896 85 ---PGTALLFAGTALIGVGIAII-NVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAW 159 (355)
T ss_pred ---ccHHHHHHHHHHHHHHHHHH-hccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 12333333333333333332 2334456778886 57999999999999999999999888887664 38877766
Q ss_pred HHHHHHH
Q psy5074 167 LGLICTL 173 (204)
Q Consensus 167 ~~~~~~i 173 (204)
.++..++
T Consensus 160 ~~~~~~~ 166 (355)
T TIGR00896 160 WALPALL 166 (355)
T ss_pred HHHHHHH
Confidence 6554443
No 94
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.61 E-value=3.8e-14 Score=107.86 Aligned_cols=161 Identities=13% Similarity=0.043 Sum_probs=126.7
Q ss_pred HHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCC
Q psy5074 14 ALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQD 92 (204)
Q Consensus 14 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (204)
.+....+.+-+++|+++++ .++..+..+.+.+..++.|.+.||+|.|++.+.+.++..+..+..++....++
T Consensus 32 l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~------- 104 (417)
T COG2223 32 LFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPS------- 104 (417)
T ss_pred HHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCc-------
Confidence 3444455666778999888 89999999999999999999999999999999999999999888887754321
Q ss_pred ccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc---hhHHHHHHHH
Q psy5074 93 YSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG---SAATYGLLGL 169 (204)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g---~~~~~~~~~~ 169 (204)
+..+....+..+..+. ...+...++++.+|+|++|++.|+.. .+|+|..+...+.+.+....+ |+....++..
T Consensus 105 --~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~ 180 (417)
T COG2223 105 --TWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVV 180 (417)
T ss_pred --hHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1233333333333232 23355578999999999999999999 999999999999999999999 8888888888
Q ss_pred HHHHHHHHHhhcccCC
Q psy5074 170 ICTLGAVFVYTRVPET 185 (204)
Q Consensus 170 ~~~i~~~~~~~~~~e~ 185 (204)
..++..+..++...|.
T Consensus 181 ~l~v~~v~~~~~~~d~ 196 (417)
T COG2223 181 ALAIAAVLAWLGMNDV 196 (417)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 8888777777766543
No 95
>KOG0255|consensus
Probab=99.61 E-value=4.4e-14 Score=114.25 Aligned_cols=138 Identities=15% Similarity=0.132 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcC
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGI 112 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (204)
....++..++..+|+++.|.++||+|||++++.+..+..++.+..++. .++.......+..+....+.
T Consensus 121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a------------~~~~~~~~~Rfl~G~~~~~~ 188 (521)
T KOG0255|consen 121 ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA------------PNYWMFLIFRFLSGFFGSGP 188 (521)
T ss_pred HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh------------CcHHHHHHHHHHHHhhccch
Confidence 577888899999999999999999999999999999999999888876 33444444554444445555
Q ss_pred ccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 113 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 113 ~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
..+.+.+..|+++++.|+.+..+ ......++.+++...+++.. +||+.+++..++..+..+. +++.||++
T Consensus 189 ~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~ 258 (521)
T KOG0255|consen 189 LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP 258 (521)
T ss_pred hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence 56778899999999999999999 88888888899988888877 7999888888887777666 44466764
No 96
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.60 E-value=1.1e-13 Score=107.84 Aligned_cols=142 Identities=10% Similarity=-0.110 Sum_probs=107.2
Q ss_pred HHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhee
Q psy5074 5 TFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVF 83 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~ 83 (204)
.+...........+.|.+.++.|.+..+ ++......++..+++++.|+++||+|||+.+..+.....++.......
T Consensus 15 ~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~--- 91 (381)
T PRK03633 15 LLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM--- 91 (381)
T ss_pred HHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 3344455566778899999999998766 888999999999999999999999999999999988888877776654
Q ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhh
Q psy5074 84 KNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV 158 (204)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 158 (204)
++.+..+....+.+.+.+. ..+.......|..|+++|+++.+..+....+|..+++.+.+.+.+..
T Consensus 92 --------~~~~~l~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 157 (381)
T PRK03633 92 --------VGFWSWLAWRFVAGIGCAM-IWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL 157 (381)
T ss_pred --------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 1223333333333333332 23333455667888999999999999999999999999988876653
No 97
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.60 E-value=1.3e-13 Score=110.73 Aligned_cols=171 Identities=14% Similarity=0.068 Sum_probs=118.4
Q ss_pred HHHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhc-----CchHH-HHHhhHHHHHHHHH
Q psy5074 4 MTFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRL-----GRRFL-LLTSEITMAFCQLL 76 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~-~~~~~~~~~i~~~~ 76 (204)
..+.+..........+|.++++.|.+.++ +....+ ... .++.++++.++||+ |||+. ++.+.+...++...
T Consensus 20 l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~-~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~ 97 (491)
T PRK11010 20 LGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLV-GQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAA 97 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHH
Confidence 34455556666777788888888888665 443222 222 26889999999999 99985 55666666666666
Q ss_pred HHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH
Q psy5074 77 LVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID 156 (204)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 156 (204)
+++.... .+.+.......+...+ .....+...++..|++|+++|+++.++......+|..+++.+...+.+
T Consensus 98 ~a~~~~~--------~~l~~l~~~~~l~~~~-~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~ 168 (491)
T PRK11010 98 MGFLEPG--------TQLRWLAALAVVIAFC-SASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLAD 168 (491)
T ss_pred HHHcCCc--------chHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6554210 1222222223333333 334455667899999999999999999999999999999999999888
Q ss_pred -hhchhHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 157 -TVGSAATYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 157 -~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
..|||..|++.+...++..+..++ .||++
T Consensus 169 ~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~ 198 (491)
T PRK11010 169 RYLGWQGMYWLMAALLIPCIIATLL-APEPT 198 (491)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHh-cCCCc
Confidence 469999999888877766555444 67764
No 98
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.60 E-value=1.3e-13 Score=107.74 Aligned_cols=169 Identities=13% Similarity=0.026 Sum_probs=105.5
Q ss_pred HHHHhhChhHHHHhHHHHH-HhhCCCCCh-hHHHHHHHH-HHHHHHHHHHHhhhhcCchHHHH-HhhHHHHHHHHHHHHh
Q psy5074 5 TFQRFSGVSALIYYTVDIF-RNAGTRIAP-STASIIVGA-VQVVVSLLSSLLIDRLGRRFLLL-TSEITMAFCQLLLVAY 80 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~-~~~~~~~~~g~l~d~~grr~~~~-~~~~~~~i~~~~~~~~ 80 (204)
.+....+...+....|.++ +++|.+..+ +.......+ ....+.+.+++ .||+||||.++ .+.+...+........
T Consensus 24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 102 (393)
T PRK15011 24 AFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN 102 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455556666654 567888766 555444444 45556656666 99999998754 4444444444444333
Q ss_pred heeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhH--hHhHHHHHHHHHHHHHHHHHhHHHHHhh
Q psy5074 81 FVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKL--WSSSLLMCYSWSCLFLVSKVFMDLIDTV 158 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 158 (204)
+..+.......... +.+....|....+..|..|++.|. ...++.+....+|..++|.+.+.+.+..
T Consensus 103 -----------~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~ 170 (393)
T PRK15011 103 -----------RNYFVLLFVGVFLS-SFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF 170 (393)
T ss_pred -----------hHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 12222222222222 222234455556677766666553 3346778888899999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 159 GSAATYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 159 g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
|||..|...+...++..+..+++.||.+
T Consensus 171 gw~~~f~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 171 SFTVMYLSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 9999998888877777776666678764
No 99
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.59 E-value=3.1e-13 Score=105.63 Aligned_cols=158 Identities=11% Similarity=0.031 Sum_probs=105.6
Q ss_pred hHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCC
Q psy5074 13 SALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDM 90 (204)
Q Consensus 13 ~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (204)
.....+.|.++++ .|.+... ...........+++.++.|+++||+|||+.+..+.....+........
T Consensus 233 ~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---------- 302 (393)
T PRK15011 233 SLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA---------- 302 (393)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH----------
Confidence 3344577777654 6777655 555556666778899999999999999998776655544433332221
Q ss_pred CCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHH
Q psy5074 91 QDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLI 170 (204)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~ 170 (204)
+..+..+....+.....+... +....+..|.+|++ |+++.++.+...++|..+++.+.+.+.+..||+..+.+..++
T Consensus 303 -~~~~~~l~~~~l~~~~~g~~~-~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~ 379 (393)
T PRK15011 303 -HSPAILLGLQLLNAIYIGILG-GIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVM 379 (393)
T ss_pred -hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 122222222222222222221 23346678988865 999999998889999999999999999989998888777777
Q ss_pred HHHHHHHHhhcccC
Q psy5074 171 CTLGAVFVYTRVPE 184 (204)
Q Consensus 171 ~~i~~~~~~~~~~e 184 (204)
.++..+..++ .||
T Consensus 380 ~~~~~~~~~~-~~~ 392 (393)
T PRK15011 380 IIATLFCLLR-IKD 392 (393)
T ss_pred HHHHHHHHHh-hcC
Confidence 7766655554 565
No 100
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.59 E-value=2.4e-13 Score=107.59 Aligned_cols=163 Identities=16% Similarity=0.140 Sum_probs=98.8
Q ss_pred hhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecC
Q psy5074 9 FSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQ 86 (204)
Q Consensus 9 ~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (204)
....+.+..|.|.++++ .|.+.++ .....+......++.++.|+++||+|||+.+.++.....+........... .
T Consensus 256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-~- 333 (432)
T PRK10406 256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQN-V- 333 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHc-C-
Confidence 34456677889988865 6887655 566666677778888899999999999998876655444333322211100 0
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHH-HHHHHHHHhHHHHHhhc-hhHHH
Q psy5074 87 GYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWS-CLFLVSKVFMDLIDTVG-SAATY 164 (204)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~g-~~~~~ 164 (204)
...........+.....+. ..+..+.+.+|.+|++.|+++.|+.+..++. .+...|.+.+.+ +..| +...+
T Consensus 334 -----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~ 406 (432)
T PRK10406 334 -----SSPYAAFGLVMCALLIVSF-YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFF 406 (432)
T ss_pred -----CcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHH
Confidence 1122222222212122222 1234567889999999999999999988775 344577777754 5555 43444
Q ss_pred HHHHHHHHHHHHHHhh
Q psy5074 165 GLLGLICTLGAVFVYT 180 (204)
Q Consensus 165 ~~~~~~~~i~~~~~~~ 180 (204)
+..++..++..+..++
T Consensus 407 ~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 407 WYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555544444
No 101
>KOG2532|consensus
Probab=99.58 E-value=9.7e-14 Score=109.78 Aligned_cols=150 Identities=11% Similarity=0.024 Sum_probs=121.9
Q ss_pred hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHH
Q psy5074 26 AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTI 104 (204)
Q Consensus 26 ~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (204)
++.+.++ +++......+.++++++++++.||+|-|+++..+.++.++..++.-..... ..+..++...+.
T Consensus 68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~---------~~~~~~~~R~lq 138 (466)
T KOG2532|consen 68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI---------GFYLLLVLRFLQ 138 (466)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh---------cchhhHHHHHHh
Confidence 3455544 788888999999999999999999999999999999999998887766432 223334444444
Q ss_pred HHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHh-hchhHHHHHHHHHHHHHHHHHhhccc
Q psy5074 105 VAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT-VGSAATYGLLGLICTLGAVFVYTRVP 183 (204)
Q Consensus 105 ~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~~~~~~i~~~~~~~~~~ 183 (204)
+...+. ..|....+.+++.|+++|++..++......+|..+.-++.+.+.+. .||+.+|++.+...++..++.+++..
T Consensus 139 Gl~~g~-~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 139 GLGQGV-LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHHHhH-HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 444444 4466778999999999999999999999999999999999999988 99999999999999998887776665
Q ss_pred CC
Q psy5074 184 ET 185 (204)
Q Consensus 184 e~ 185 (204)
|+
T Consensus 218 d~ 219 (466)
T KOG2532|consen 218 DS 219 (466)
T ss_pred CC
Confidence 54
No 102
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.56 E-value=9.3e-13 Score=103.27 Aligned_cols=166 Identities=11% Similarity=0.050 Sum_probs=112.3
Q ss_pred HHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHH-HhhHHHHHHHHHHHHhhee
Q psy5074 6 FQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLL-TSEITMAFCQLLLVAYFVF 83 (204)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-~~~~~~~i~~~~~~~~~~~ 83 (204)
+.+..+.+....|.|.+.++.|.+..+ ........++..++.+..|+++||+|||+.+. .+.....+...........
T Consensus 232 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~ 311 (402)
T TIGR00897 232 IINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH 311 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445556677788999999888888766 66667778889999999999999999988764 2333333333232221110
Q ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHH
Q psy5074 84 KNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAAT 163 (204)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 163 (204)
.. ...+.........+.+.+. ..+. .....|..| ++|+++.|+.+....+++.++|.+.+.+.+..|+...
T Consensus 312 ~~------~~~~~~~~~~~~~G~~~~~-~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~ 382 (402)
T TIGR00897 312 FG------HSFAVALIIAIALGIFLAG-YVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGV 382 (402)
T ss_pred cC------CcHHHHHHHHHHHHHHHHH-HHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 00 1222222222233333222 2333 345567655 5799999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy5074 164 YGLLGLICTLGAVFVYT 180 (204)
Q Consensus 164 ~~~~~~~~~i~~~~~~~ 180 (204)
+++.+++.++..+...+
T Consensus 383 ~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 383 VWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888887777666554
No 103
>PTZ00207 hypothetical protein; Provisional
Probab=99.56 E-value=1.1e-12 Score=106.19 Aligned_cols=164 Identities=10% Similarity=-0.011 Sum_probs=109.0
Q ss_pred hhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCC
Q psy5074 12 VSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDM 90 (204)
Q Consensus 12 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (204)
.+.+..+.|.+.+++|++..+ +....+.. ......++.|++.||+|||+++.++.+...++.+..+......-
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i----- 116 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI----- 116 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc-----
Confidence 357788899998899998766 55544433 33356678899999999999999999999999988776521100
Q ss_pred CCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHH
Q psy5074 91 QDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLI 170 (204)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~ 170 (204)
..+.+...+...+.+.+.+ ...+.....+.++|| ++||++.|+......+|+.+.+.+...+.. .+|+..+++.+++
T Consensus 117 ~~s~~~l~l~r~l~G~G~~-~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl 193 (591)
T PTZ00207 117 EGSVVRLSVYNGLMTLGCM-LFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSF 193 (591)
T ss_pred cCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHH
Confidence 0122222223333333322 223344456788897 679999999999999998765555554443 3566777777777
Q ss_pred HHHHHHHHhhcccC
Q psy5074 171 CTLGAVFVYTRVPE 184 (204)
Q Consensus 171 ~~i~~~~~~~~~~e 184 (204)
.++..++.+.++++
T Consensus 194 ~~vv~ll~~~~vr~ 207 (591)
T PTZ00207 194 ALVVGILAIVFMRL 207 (591)
T ss_pred HHHHHHHHHhheeC
Confidence 77766666555543
No 104
>PRK10133 L-fucose transporter; Provisional
Probab=99.56 E-value=7.3e-13 Score=104.94 Aligned_cols=141 Identities=8% Similarity=-0.068 Sum_probs=102.7
Q ss_pred HHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhee
Q psy5074 5 TFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVF 83 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~ 83 (204)
++.............|.+.+++|.+..+ .+......++..+++++.|+++||+|||+.+..+..+..++.++.......
T Consensus 35 ~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a 114 (438)
T PRK10133 35 FFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI 114 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444466778899998889998866 888899999999999999999999999999999999999888765321100
Q ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHH
Q psy5074 84 KNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDL 154 (204)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l 154 (204)
++.+..+....+.+.+.+.. .+....++.|..|+++|....++.+....+|..+++.+.+.+
T Consensus 115 --------~~~~~ll~~r~l~G~g~g~~-~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 115 --------MNYTLFLVGLFIIAAGLGCL-ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred --------CCHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233333444444444443 334456677888888777788999999889988888776544
No 105
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.56 E-value=6.4e-13 Score=103.85 Aligned_cols=136 Identities=13% Similarity=0.036 Sum_probs=110.3
Q ss_pred HHHhHHHHHHhhCCCCCh--hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCC
Q psy5074 15 LIYYTVDIFRNAGTRIAP--STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQD 92 (204)
Q Consensus 15 ~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (204)
..+-.|++.+++|++.++ +.+......+..+..+++|+++||+|-|+++.++.+..++...+..+..
T Consensus 45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~----------- 113 (511)
T TIGR00806 45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT----------- 113 (511)
T ss_pred HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 455678888889999865 6888889999999999999999999999999999999999998888762
Q ss_pred ccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHH
Q psy5074 93 YSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATY 164 (204)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 164 (204)
+.....+...+.+.+-+..+ ....++.+++|+++|+++.++.+....+|.++++.+.+. ...+||+...
T Consensus 114 Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~ 182 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYS 182 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHH
Confidence 22333444444444444433 666899999999999999999999999999999999999 5678997644
No 106
>PRK12382 putative transporter; Provisional
Probab=99.56 E-value=1.1e-12 Score=102.46 Aligned_cols=160 Identities=14% Similarity=0.125 Sum_probs=114.7
Q ss_pred hChhHHHHhHHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCC
Q psy5074 10 SGVSALIYYTVDIFRNAGTRIAPSTASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYD 89 (204)
Q Consensus 10 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (204)
.+......+.|.++++.+.+. .........++.++++++.|++.||+|||+.+..+.....+........
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--------- 299 (392)
T PRK12382 230 VGFAVIGTFVSLYFASKGWAM-AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA--------- 299 (392)
T ss_pred HHHhHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc---------
Confidence 334455667777777766653 2344445666778899999999999999999888877777766655443
Q ss_pred CCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHH
Q psy5074 90 MQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGL 169 (204)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~ 169 (204)
+..+.......+.+.+.+. ..+.......|.+|+++|+++.++.+....++..++|.+.+.+.+..||+..+.+.+.
T Consensus 300 --~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~ 376 (392)
T PRK12382 300 --PTAWVALAGAALTGAGCSL-IFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAI 376 (392)
T ss_pred --ccHHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 1223333333333333332 2334446678889999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHhhcc
Q psy5074 170 ICTLGAVFVYTRV 182 (204)
Q Consensus 170 ~~~i~~~~~~~~~ 182 (204)
+.++..+..++..
T Consensus 377 ~~~~~~~~~~~~~ 389 (392)
T PRK12382 377 SAVLGIIVTILSF 389 (392)
T ss_pred HHHHHHHHHHhhc
Confidence 8777776665543
No 107
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.55 E-value=2.2e-13 Score=107.91 Aligned_cols=170 Identities=10% Similarity=0.030 Sum_probs=110.3
Q ss_pred HhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHH--HHHHHHhhee
Q psy5074 8 RFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFC--QLLLVAYFVF 83 (204)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~--~~~~~~~~~~ 83 (204)
.....+.+..|.|.++++ .|.+... .+...+..+..+++.++.|+++||++||+....+.....+. .........
T Consensus 263 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 341 (438)
T TIGR00712 263 VYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNP- 341 (438)
T ss_pred HHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcC-
Confidence 344446677889999887 5777655 67777788889999999999999996543222232222211 111111100
Q ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHH-HHHHHHhHHHHHhhchhH
Q psy5074 84 KNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCL-FLVSKVFMDLIDTVGSAA 162 (204)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~g~~~ 162 (204)
. ...+.........+.. ..+..........|.+|++.|+++.|+.+...++++ .++|.+.+.+.+..|+..
T Consensus 342 -~------~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~ 413 (438)
T TIGR00712 342 -A------GNPLVDMICMIVIGFL-IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDG 413 (438)
T ss_pred -C------CchHHHHHHHHHHHHH-HccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchH
Confidence 0 1122221111111111 111111122457799999999999999998888875 679999999999999988
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 163 TYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 163 ~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
.+.+.....+++.+..++.+||.|
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 414 GFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 888888888888887777788876
No 108
>KOG2615|consensus
Probab=99.55 E-value=8.8e-14 Score=104.60 Aligned_cols=111 Identities=18% Similarity=0.111 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcC
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGI 112 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (204)
+...+.+++.+++.++.+|.++||+|||+++++|++..++...+.+.. .+...++.....++.+.. .
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S------------~~F~afv~aR~l~Gi~kg-n 137 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS------------RNFAAFVLARFLGGIFKG-N 137 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhhhhccC-c
Confidence 578888999999999999999999999999999999999877776655 333334333444444433 3
Q ss_pred ccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH
Q psy5074 113 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID 156 (204)
Q Consensus 113 ~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 156 (204)
-.+..++++|+.++|.|+.+++.......+|-.+||.+.+++..
T Consensus 138 l~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 138 LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred hHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 34677999999999999999999999999999999999999877
No 109
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.55 E-value=4.4e-13 Score=105.63 Aligned_cols=157 Identities=11% Similarity=-0.004 Sum_probs=108.1
Q ss_pred HhHHHHHHhh----CCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCC
Q psy5074 17 YYTVDIFRNA----GTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQ 91 (204)
Q Consensus 17 ~~~~~~~~~~----g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (204)
.+.|.++.+. +.+... +....+..+...++.++.|+++||+|||+.+..+..+..+...+....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~----------- 312 (420)
T PRK09528 244 QQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA----------- 312 (420)
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-----------
Confidence 3455554432 333333 566666777788999999999999999999888888777766665543
Q ss_pred CccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHH-HHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHH
Q psy5074 92 DYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSL-LMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLI 170 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~ 170 (204)
++.+..+....+.....+.. .+....+.+|.+|++.|++..+. .+....++..+++.+.+++.+..||+..|...+.+
T Consensus 313 ~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~ 391 (420)
T PRK09528 313 TGPLEVSILKLLHAFEVPFL-LVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGI 391 (420)
T ss_pred ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHH
Confidence 12333333233333222221 22334678899999999988765 46667889999999999999999999999888888
Q ss_pred HHHHHHHHhhcccCC
Q psy5074 171 CTLGAVFVYTRVPET 185 (204)
Q Consensus 171 ~~i~~~~~~~~~~e~ 185 (204)
.++..++.++..++.
T Consensus 392 ~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 392 VLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHHHHHHhcCC
Confidence 777766666555543
No 110
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.55 E-value=7.6e-13 Score=102.77 Aligned_cols=170 Identities=14% Similarity=0.070 Sum_probs=106.5
Q ss_pred hhChhHHHHhHHHHHHhhCC--CCCh-hHHHH-----HHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHh
Q psy5074 9 FSGVSALIYYTVDIFRNAGT--RIAP-STASI-----IVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAY 80 (204)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~g~--~~~~-~~~~~-----~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~ 80 (204)
....+.+....+.+.++... ++++ ..... ...+...+++++.|+++||+|||+.+..+..+..++.......
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 85 (394)
T TIGR00883 6 WFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLL 85 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhC
Confidence 34445566667777676543 2222 22221 1223335688999999999999999999999998888877765
Q ss_pred heeecCCCCCCCccH---HHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHH--
Q psy5074 81 FVFKNQGYDMQDYSW---IPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI-- 155 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~-- 155 (204)
.+..+ ...+ ..+....+.+.+.+ ...+....++.|.+|+++|++..++.+....+|..+++.+...+.
T Consensus 86 ~~~~~------~~~~~~~~~~~~r~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~ 158 (394)
T TIGR00883 86 PSYAT------IGIWAPILLLLARLIQGFSLG-GEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYL 158 (394)
T ss_pred CChhh------hHHHHHHHHHHHHHHHHhhcc-ccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 32211 0001 11222222222222 233455678999999999999999999888888888887765543
Q ss_pred ------HhhchhHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 156 ------DTVGSAATYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 156 ------~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
+..+|+..+.+.+...++.... ....||++
T Consensus 159 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~ 194 (394)
T TIGR00883 159 LGDDALLEWGWRIPFLVSAVLVLIGLYL-RRNLEETP 194 (394)
T ss_pred cCHHHhhccchHHHHHHHHHHHHHHHHH-HHhcCCCh
Confidence 3568998887766655544333 23355543
No 111
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.54 E-value=7.3e-13 Score=104.42 Aligned_cols=172 Identities=11% Similarity=-0.006 Sum_probs=105.3
Q ss_pred HHHHHhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhh
Q psy5074 4 MTFQRFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYF 81 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~ 81 (204)
..+....+......+.|.++++ +|++..+ +.......+...+++++.|+++||+|||+.++++..+..+.........
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~ 97 (420)
T PRK09528 18 FFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYV 97 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555667777777666 8998876 8889999999999999999999999999998876655544433221110
Q ss_pred eeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccc--hhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc
Q psy5074 82 VFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIP--LEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG 159 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 159 (204)
... .................+..... ......++.+ .++|++..+.......+|..++|.+.+.+.+ .+
T Consensus 98 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~ 168 (420)
T PRK09528 98 FAP-------LLQYNILLGAIVGGIYLGFGFLA-GAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN-IN 168 (420)
T ss_pred HHH-------HHHHHHHHHHHHHHHHhhhhhcc-chhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh-cC
Confidence 000 00000011111111111211111 1112223323 2345667788888889999999999998876 48
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccC
Q psy5074 160 SAATYGLLGLICTLGAVFVYTRVPE 184 (204)
Q Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~e 184 (204)
|+..|+..+...++..+..++..||
T Consensus 169 ~~~~f~~~~~~~~~~~~~~~~~~~~ 193 (420)
T PRK09528 169 PQINFWLGSGSALILLVLLFFAKPD 193 (420)
T ss_pred chHhHHHHHHHHHHHHHHHhccccc
Confidence 8888888777776666555554444
No 112
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.52 E-value=2.1e-12 Score=100.00 Aligned_cols=154 Identities=14% Similarity=0.106 Sum_probs=104.9
Q ss_pred HHHHhHHHHHH-hhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCC
Q psy5074 14 ALIYYTVDIFR-NAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQ 91 (204)
Q Consensus 14 ~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (204)
....+.|.+++ +.|.+..+ ............++.++.+++.||+|||+.+.++.....+........
T Consensus 217 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~----------- 285 (375)
T TIGR00899 217 LYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD----------- 285 (375)
T ss_pred HHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-----------
Confidence 34455666654 46877655 555555556677788999999999999998887766555443333322
Q ss_pred CccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHH
Q psy5074 92 DYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLIC 171 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 171 (204)
+..+.......+.+.+.+. ..+....+..|..|++ |+++.++.+...+++..++|.+.+.+.+..||+..+...++..
T Consensus 286 ~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~ 363 (375)
T TIGR00899 286 NSLWALLMLQLLNAIFIGI-LAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVML 363 (375)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 1222222222233333333 2345557788988865 6699999999999999999999999999999988888887777
Q ss_pred HHHHHHHhh
Q psy5074 172 TLGAVFVYT 180 (204)
Q Consensus 172 ~i~~~~~~~ 180 (204)
+++.+...+
T Consensus 364 ~~~~~~~~~ 372 (375)
T TIGR00899 364 IVALFCLLL 372 (375)
T ss_pred HHHHHHHhe
Confidence 766665543
No 113
>PRK03545 putative arabinose transporter; Provisional
Probab=99.52 E-value=3.9e-12 Score=99.34 Aligned_cols=157 Identities=15% Similarity=0.076 Sum_probs=106.3
Q ss_pred hHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCC
Q psy5074 13 SALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDM 90 (204)
Q Consensus 13 ~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (204)
+....+.|.++++ .|.+.+. ........++.++++++.++++||++||+.. .+...............
T Consensus 222 ~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~--------- 291 (390)
T PRK03545 222 FTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAA--------- 291 (390)
T ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHh---------
Confidence 3344566666555 6888766 6777778888999999999999999988754 34333333333222221
Q ss_pred CCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHH
Q psy5074 91 QDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLI 170 (204)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~ 170 (204)
+..+.......+.+.+. ....+.......|..| +.|+++.++.+....+|..++|.+.+.+.+..|++..+...+.+
T Consensus 292 -~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~ 368 (390)
T PRK03545 292 -NSEWHLSVLSIFWGIAI-MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAAL 368 (390)
T ss_pred -chHHHHHHHHHHHHHHH-hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHH
Confidence 12222222222222222 2233344466777776 57899999999999999999999999999999999999888888
Q ss_pred HHHHHHHHhhcc
Q psy5074 171 CTLGAVFVYTRV 182 (204)
Q Consensus 171 ~~i~~~~~~~~~ 182 (204)
.+++.+..+...
T Consensus 369 ~~~~~~~~~~~~ 380 (390)
T PRK03545 369 ALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHc
Confidence 877777666544
No 114
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.52 E-value=1.9e-12 Score=100.85 Aligned_cols=164 Identities=10% Similarity=0.007 Sum_probs=108.7
Q ss_pred HHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCch----HHHHHhhHHHHHHHHHHHH
Q psy5074 5 TFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRR----FLLLTSEITMAFCQLLLVA 79 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr----~~~~~~~~~~~i~~~~~~~ 79 (204)
++..+.+......++|.++++.|.+.++ +.......+...+++++.|.++||+||| +.+.+... +.......
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~---~~~~~~~~ 89 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTL---LFAVAFWF 89 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHH---HHHHHHHH
Confidence 4555566667778888999999998877 8888889999999999999999999994 33222211 11111111
Q ss_pred hheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc
Q psy5074 80 YFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG 159 (204)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 159 (204)
. .++.+..+....+.+.+.+ ...|...++..+. +++|+++.+.....+.+|..++|.+.+.+.+.+|
T Consensus 90 ~----------~~~~~~l~i~~~l~g~~~~-~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g 156 (382)
T PRK11128 90 G----------AHSFWLLFVAIGLFNLFFS-PLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG 156 (382)
T ss_pred h----------cccHHHHHHHHHHHHHHHc-ccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 0123333333333333333 3445555565554 4568888899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCC
Q psy5074 160 SAATYGLLGLICTLGAVFVYTRVPET 185 (204)
Q Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~e~ 185 (204)
|+..|+..++...+..+. .+..||+
T Consensus 157 ~~~~f~~~~~~~~~~~~~-~~~~~~~ 181 (382)
T PRK11128 157 EQAILWILTAGVASMLLG-QLLRPTI 181 (382)
T ss_pred hhHHHHHHHHHHHHHHHH-HHccCCC
Confidence 999887766554444333 3334554
No 115
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.52 E-value=4.8e-12 Score=98.56 Aligned_cols=151 Identities=10% Similarity=0.048 Sum_probs=108.4
Q ss_pred hHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCC
Q psy5074 13 SALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQ 91 (204)
Q Consensus 13 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (204)
.....+.|.+.++.|.+.+. ........+..+++++..+++.||+|||+.+..+.....++.......
T Consensus 217 ~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~----------- 285 (381)
T PRK03633 217 GSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLSQ----------- 285 (381)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhhh-----------
Confidence 44556788888888887655 666777778889999999999999999998887777766655433210
Q ss_pred CccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHH
Q psy5074 92 DYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLIC 171 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 171 (204)
. . ......+.+.. .....|.......|..|+++++...+..+....+|..++|.+.+++.++.++++.|.+.+.+.
T Consensus 286 -~-~-~~~~~~l~g~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~ 361 (381)
T PRK03633 286 -A-A-MAPALFILGAA-GFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVS 361 (381)
T ss_pred -H-H-HHHHHHHHHHH-HHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 1 1 11111122211 222345666778899999888888888888888999999999999999999988888777776
Q ss_pred HHHHHHH
Q psy5074 172 TLGAVFV 178 (204)
Q Consensus 172 ~i~~~~~ 178 (204)
++..+..
T Consensus 362 l~~~~~~ 368 (381)
T PRK03633 362 FIYLLML 368 (381)
T ss_pred HHHHHHH
Confidence 6555443
No 116
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.51 E-value=1.3e-12 Score=101.35 Aligned_cols=165 Identities=18% Similarity=0.197 Sum_probs=109.0
Q ss_pred HHHhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHH-HhhHHHHHH---HHHHHH
Q psy5074 6 FQRFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLL-TSEITMAFC---QLLLVA 79 (204)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-~~~~~~~i~---~~~~~~ 79 (204)
+...........+.|.++++ .|.+..+ ........+...++.++.++++||++||+... .......+. ......
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (399)
T TIGR00893 225 FLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMF 304 (399)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Confidence 34444455667778887765 6777655 67778888889999999999999999996211 111111111 111111
Q ss_pred hheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc
Q psy5074 80 YFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG 159 (204)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 159 (204)
..... ...+.......+ .+...+..+..+.+.+|.+|+++|+++.++.+....++..++|.+.+.+.+..|
T Consensus 305 ~~~~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g 375 (399)
T TIGR00893 305 ATNYV-------NIPYAALALVAL--GFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG 375 (399)
T ss_pred Hhccc-------hhHHHHHHHHHH--HHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence 11100 112222222222 222223456778899999999999999999999999999999999999999888
Q ss_pred -hhHHHHHHHHHHHHHHHHHh
Q psy5074 160 -SAATYGLLGLICTLGAVFVY 179 (204)
Q Consensus 160 -~~~~~~~~~~~~~i~~~~~~ 179 (204)
++..+.+.+...+++.+..+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 376 SFAGALMVVAALALIGALSYL 396 (399)
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 88888777777666655543
No 117
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.51 E-value=1.7e-13 Score=112.77 Aligned_cols=178 Identities=10% Similarity=0.003 Sum_probs=122.6
Q ss_pred HHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheee-
Q psy5074 7 QRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFK- 84 (204)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~- 84 (204)
++.........-.|++-++++++..+ +++.+...++..++.++.+++.||.|||+++.++.++++++.++.+......
T Consensus 44 ~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~ 123 (633)
T TIGR00805 44 QGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSG 123 (633)
T ss_pred HHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcC
Confidence 33333344555567777778998866 8888899999999999999999999999999999999999988876542100
Q ss_pred ---c-------CC-----C--------------------C-CC--CccHHHHHHHHHHHHHHHhcCccchhhhhccccch
Q psy5074 85 ---N-------QG-----Y--------------------D-MQ--DYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPL 126 (204)
Q Consensus 85 ---~-------~~-----~--------------------~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 126 (204)
. .+ . + .. ...+..+....+..+.......+....++.|.+|+
T Consensus 124 ~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~ 203 (633)
T TIGR00805 124 RYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKS 203 (633)
T ss_pred CccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCc
Confidence 0 00 0 0 00 01122222233332222333445667899999999
Q ss_pred hhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhh----------------------chhHHHHHHHHHHHHHHHHHhhcccC
Q psy5074 127 EAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV----------------------GSAATYGLLGLICTLGAVFVYTRVPE 184 (204)
Q Consensus 127 ~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------------------g~~~~~~~~~~~~~i~~~~~~~~~~e 184 (204)
++|++..++.+....+|..+++.+.+.+.+.+ .|+..|++.+++.++..+..++ .|+
T Consensus 204 ~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~-~p~ 282 (633)
T TIGR00805 204 KNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF-FPK 282 (633)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh-Ccc
Confidence 99999999999999999999999988877542 2656677777777666554443 554
Q ss_pred C
Q psy5074 185 T 185 (204)
Q Consensus 185 ~ 185 (204)
+
T Consensus 283 ~ 283 (633)
T TIGR00805 283 A 283 (633)
T ss_pred c
Confidence 3
No 118
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.51 E-value=1.7e-12 Score=101.11 Aligned_cols=154 Identities=12% Similarity=0.035 Sum_probs=105.6
Q ss_pred HHHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhH-HHHHHHHHHHHhh
Q psy5074 4 MTFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEI-TMAFCQLLLVAYF 81 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~-~~~i~~~~~~~~~ 81 (204)
.++..+.+......++|.++++.|.+..+ +.......+...+++++.+.++||+|||+....... ...+.........
T Consensus 12 ~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (382)
T TIGR00902 12 GFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGA 91 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555666667778889999999998877 888888899999999999999999998653322111 1111111111110
Q ss_pred eeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchh
Q psy5074 82 VFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSA 161 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 161 (204)
+..+..+....+...+.+. ..|...++..| ++++|++..+.....+.+|..++|.+.+.+.+..||+
T Consensus 92 ----------~~~~~l~~~~~l~~~~~~~-~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~ 158 (382)
T TIGR00902 92 ----------HNAWLLFIAIGLFALFFSA-GMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQ 158 (382)
T ss_pred ----------hhHHHHHHHHHHHHHHHcc-chhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 1233333333333333333 34566666655 3577899999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy5074 162 ATYGLLGLI 170 (204)
Q Consensus 162 ~~~~~~~~~ 170 (204)
..|.+....
T Consensus 159 ~~f~~~~~~ 167 (382)
T TIGR00902 159 NILAILTAG 167 (382)
T ss_pred HHHHHHHHH
Confidence 988776554
No 119
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.51 E-value=3.3e-13 Score=102.90 Aligned_cols=164 Identities=15% Similarity=0.127 Sum_probs=113.3
Q ss_pred hhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhc--CchHHHHHhhHHHHHHHHHHHHhheee
Q psy5074 9 FSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRL--GRRFLLLTSEITMAFCQLLLVAYFVFK 84 (204)
Q Consensus 9 ~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~~~~~~~i~~~~~~~~~~~~ 84 (204)
+..=+++..|.|.++.+ .|++... .+....+=.++++|++++|+++||+ |||...-+.+.+....++......
T Consensus 265 YivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~--- 341 (448)
T COG2271 265 YVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA--- 341 (448)
T ss_pred HHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC---
Confidence 33346788999988877 6888866 8888999999999999999999995 777765443333333222222221
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHH-HHHHHHHHhHHHHHhhchhHH
Q psy5074 85 NQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWS-CLFLVSKVFMDLIDTVGSAAT 163 (204)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~g~~~~ 163 (204)
+..++..........++.-.+..-+.-....|..|++.-|++.|+...++.+ |+..+....+++.+.+||.+.
T Consensus 342 ------~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~ 415 (448)
T COG2271 342 ------PNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGG 415 (448)
T ss_pred ------CCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcch
Confidence 1122232222222222222233334456789999999999999999999999 888888888998888999999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy5074 164 YGLLGLICTLGAVFVYTR 181 (204)
Q Consensus 164 ~~~~~~~~~i~~~~~~~~ 181 (204)
|++..+.++++.+.....
T Consensus 416 Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 416 FIVLSIAALLAILLLLPV 433 (448)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888777777666655443
No 120
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.51 E-value=3.6e-12 Score=99.56 Aligned_cols=174 Identities=12% Similarity=-0.015 Sum_probs=117.5
Q ss_pred HHHHHHhhChhHHHHhHHHHHHhhCCCCCh-hHH--HHHHHHHHHHHHHHH-HHhhhhcCchHHHHHhhHHH-HHHHHHH
Q psy5074 3 LMTFQRFSGVSALIYYTVDIFRNAGTRIAP-STA--SIIVGAVQVVVSLLS-SLLIDRLGRRFLLLTSEITM-AFCQLLL 77 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~--~~~~~~~~~~~~~~~-g~l~d~~grr~~~~~~~~~~-~i~~~~~ 77 (204)
..++.|.........+.|.++++.|.+.++ +.. ..+.....++.+++. ++..||+||||.+++..... ..+....
T Consensus 8 ~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~ 87 (390)
T TIGR02718 8 LLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASL 87 (390)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHH
Confidence 356777788788889999999999998877 554 355677777777777 55789999999876554332 2222223
Q ss_pred HHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHh
Q psy5074 78 VAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT 157 (204)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (204)
..... .. ....+.... ............+....+..|..+++.|+...+.......+|..+++...+++.+.
T Consensus 88 ~~~~~-~~------~~~~~~~~~-~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~ 159 (390)
T TIGR02718 88 ALVGP-DV------AGAGWAVGL-LACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK 159 (390)
T ss_pred HcCCc-ch------hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 00 111222222 22222333334556667788888888888888888777788888999888899999
Q ss_pred hchhHHHHHHHHHHHHHHHHHhhcccC
Q psy5074 158 VGSAATYGLLGLICTLGAVFVYTRVPE 184 (204)
Q Consensus 158 ~g~~~~~~~~~~~~~i~~~~~~~~~~e 184 (204)
.||+..|++.+.+.++..+..++..||
T Consensus 160 ~gw~~~f~~~a~l~~~~~~~~~~~~~~ 186 (390)
T TIGR02718 160 FGQRPAFLLVACVPLASLVCVLWLKDR 186 (390)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999888877766665554444
No 121
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.51 E-value=9.2e-13 Score=103.63 Aligned_cols=155 Identities=17% Similarity=0.073 Sum_probs=102.7
Q ss_pred HHHHHhhChhHHHHhHHHHHHhh--CCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHH-HHhhHHHHHHHHHHHH
Q psy5074 4 MTFQRFSGVSALIYYTVDIFRNA--GTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLL-LTSEITMAFCQLLLVA 79 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~-~~~~~~~~i~~~~~~~ 79 (204)
.+++...+.+.+..|.|.++++. |.+... ........++..++.++.|+++||++||+.. ........+.. .+..
T Consensus 250 ~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~ 328 (412)
T TIGR02332 250 AYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLAS 328 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHH
Confidence 34555666777889999999885 444444 6678888889999999999999999987753 33333333322 2221
Q ss_pred hheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc
Q psy5074 80 YFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG 159 (204)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 159 (204)
.. ...............+. ....+..+....|.+|++.|+++.|+.+...++++.++|.+.+.+.+..|
T Consensus 329 ~~----------~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g 397 (412)
T TIGR02332 329 AT----------DHNLIQLLGIIMASMGS-FSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG 397 (412)
T ss_pred hc----------CCHHHHHHHHHHHHHHh-hhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC
Confidence 10 11122111111111111 11123344566788999999999999999999999999999999998875
Q ss_pred -hhHHHHHHHHH
Q psy5074 160 -SAATYGLLGLI 170 (204)
Q Consensus 160 -~~~~~~~~~~~ 170 (204)
|+..+.+.++.
T Consensus 398 ~~~~~~~~~~~~ 409 (412)
T TIGR02332 398 SFNSGLWFVAAL 409 (412)
T ss_pred CCchhHHHHHHH
Confidence 87777655443
No 122
>PRK03699 putative transporter; Provisional
Probab=99.50 E-value=1.1e-12 Score=102.54 Aligned_cols=162 Identities=9% Similarity=-0.014 Sum_probs=111.2
Q ss_pred HHHhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhee
Q psy5074 6 FQRFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVF 83 (204)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~ 83 (204)
+....+.+.+..|.|.++++ .|++.++ ........++..++.++.++++||++||+.+........+........
T Consensus 215 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~--- 291 (394)
T PRK03699 215 LLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT--- 291 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc---
Confidence 33344456677899999865 6888766 677777888899999999999999999998887666555544443322
Q ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHH
Q psy5074 84 KNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAAT 163 (204)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 163 (204)
++.+.........+...+ +..+....+..|..|. .+++..+.......+|..++|.+.+++.+..|++..
T Consensus 292 --------~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~ 361 (394)
T PRK03699 292 --------DDPSHLLYAILGLGFFSS-AIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAA 361 (394)
T ss_pred --------CCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhh
Confidence 122222222223332222 2233444566676664 467778888888899999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy5074 164 YGLLGLICTLGAVFVYT 180 (204)
Q Consensus 164 ~~~~~~~~~i~~~~~~~ 180 (204)
++..++...++.+....
T Consensus 362 ~~~~~~~~~~~~~~~~~ 378 (394)
T PRK03699 362 LLTANGLYAVVFVMCIL 378 (394)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 88777776666554433
No 123
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.50 E-value=1.8e-12 Score=113.73 Aligned_cols=130 Identities=12% Similarity=0.171 Sum_probs=91.5
Q ss_pred HHHHHHhhCCCCCh---hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccH
Q psy5074 19 TVDIFRNAGTRIAP---STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSW 95 (204)
Q Consensus 19 ~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 95 (204)
.+.+..+++.+.+. .+...+..++..++++++|+++||+|||++++++..+..+..++....... ...+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~--------~~~~ 104 (1146)
T PRK08633 33 QNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL--------GWFW 104 (1146)
T ss_pred HHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH--------ccHH
Confidence 34444445554433 455667778888999999999999999999988876655555444332111 1223
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHh
Q psy5074 96 IPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT 157 (204)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (204)
..++...+.+.+. ....+...++++|++|+++|++++++......+|..+++.+.+.+.+.
T Consensus 105 ~l~~~r~l~G~~~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 105 LAFAVTFLLGAQS-AIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHH-HhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333 334566778999999999999999999999999999999999988775
No 124
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.50 E-value=2.3e-12 Score=99.87 Aligned_cols=164 Identities=12% Similarity=0.036 Sum_probs=103.0
Q ss_pred HHHHHHhhChhHHHHhHHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHHhhhhcCch---HHHHH-hhHHHHHHHHHHH
Q psy5074 3 LMTFQRFSGVSALIYYTVDIFRNAGTRIAPSTASIIVGAVQVVVSLLSSLLIDRLGRR---FLLLT-SEITMAFCQLLLV 78 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr---~~~~~-~~~~~~i~~~~~~ 78 (204)
+..++.....+.+..|+|+++++.|++.+......+..+ .+.+..++++||.+|| +.... .....++......
T Consensus 199 ~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~~---~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~ 275 (368)
T TIGR00903 199 AILGFGVALFDNLAIWLEAALRPAGLEDIAGDAVALAIL---AGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALA 275 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHH---HHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345666777788899999999888876433333334344 4444457888887654 33222 2333333222222
Q ss_pred HhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhh
Q psy5074 79 AYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV 158 (204)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 158 (204)
.. ...........+...+.. ...+..+.+.+|.+|++.|+++.|+.+..+++++..+|.+.+.+..
T Consensus 276 ~~-----------~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-- 341 (368)
T TIGR00903 276 FE-----------LNRLALFAFIGIAGLLML-PAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-- 341 (368)
T ss_pred Hc-----------cccHHHHHHHHHHHHhhh-hhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--
Confidence 11 122222322232222222 2234566889999999999999999999999999999999887773
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcccC
Q psy5074 159 GSAATYGLLGLICTLGAVFVYTRVPE 184 (204)
Q Consensus 159 g~~~~~~~~~~~~~i~~~~~~~~~~e 184 (204)
+....|.+++...+++.+..++ .++
T Consensus 342 ~~~~~f~~~~~~~~i~~~~~~~-~~~ 366 (368)
T TIGR00903 342 SAEAYFTFLAILITIAFAIALL-LPN 366 (368)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh-CCC
Confidence 6666777788877777766543 354
No 125
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.50 E-value=1.4e-12 Score=102.04 Aligned_cols=174 Identities=11% Similarity=0.028 Sum_probs=106.9
Q ss_pred HHHHHhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhh
Q psy5074 4 MTFQRFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYF 81 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~ 81 (204)
..+..+.+......++|.++++ .|.+..+ ........+...+++++.|+++||+|||+.++.+.....+.........
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~ 89 (396)
T TIGR00882 10 FFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYV 89 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677777777654 7888766 8889999999999999999999999999999877666554433322110
Q ss_pred eeecCCCCCCCccHHHHH-HHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhch
Q psy5074 82 VFKNQGYDMQDYSWIPIF-SVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS 160 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 160 (204)
..... ....+.... .........+. ..+....+..|.. ++++...+.....+.+|..++|.+.+.+.+ .+|
T Consensus 90 ~~~~~----~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~ 161 (396)
T TIGR00882 90 FGPLL----QSNILVGAIVGGLYLGFVFSA-GAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDP 161 (396)
T ss_pred hhhHH----HHHHHHHHHHHHHHHHHHhcc-chhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCc
Confidence 00000 000111111 11122222222 2233334444432 233445677777788899999999887654 689
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCC
Q psy5074 161 AATYGLLGLICTLGAVFVYTRVPET 185 (204)
Q Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~e~ 185 (204)
+..|.+.+.+.++..+..+...||+
T Consensus 162 ~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (396)
T TIGR00882 162 QIVFWLGSGFALILMLLLMFAKPKA 186 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999888777777665555444543
No 126
>KOG0254|consensus
Probab=99.50 E-value=1.7e-12 Score=104.79 Aligned_cols=140 Identities=18% Similarity=0.078 Sum_probs=110.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcC
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGI 112 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (204)
.+......++..++++++|+++|++|||+.++++.+...++.++.+... ......+...+.+.+.+...
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~-----------~~~~l~~GR~l~G~g~G~~~ 160 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP-----------SWYQLIVGRILTGLGVGGAS 160 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHhccchhhhh
Confidence 5889999999999999999999999999999999999999999998872 33444555555555555443
Q ss_pred ccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHh--hchhHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 113 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT--VGSAATYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 113 ~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
.+...|.+|+.|++.|+...+..+.....|..++ .+.+....+ .+||..+.+..+.+++..+. .++.||++
T Consensus 161 -~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp 233 (513)
T KOG0254|consen 161 -VLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESP 233 (513)
T ss_pred -hcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence 3556899999999999999999988888776666 555555544 38998888888888877777 66688863
No 127
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.49 E-value=3.3e-12 Score=101.29 Aligned_cols=174 Identities=12% Similarity=0.029 Sum_probs=114.6
Q ss_pred hhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhh----hcCchHHHHHh-hHHHHHHHHHHHHhheeec
Q psy5074 12 VSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLID----RLGRRFLLLTS-EITMAFCQLLLVAYFVFKN 85 (204)
Q Consensus 12 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~~~-~~~~~i~~~~~~~~~~~~~ 85 (204)
......+.+.+++++|.+... ........+...+.+++.|+++| |+||||.++.. .....++..++........
T Consensus 20 ~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~ 99 (477)
T TIGR01301 20 WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGH 99 (477)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhh
Confidence 445567777788889998765 77788888899999999999999 59999998875 4444555455544322110
Q ss_pred CC---CCCCCcc---HHHHHHHHHHHHHHHhcCccchhhhhccccchhhh--HhHhHHHHHHHHHHHHHHHHHhHHH--H
Q psy5074 86 QG---YDMQDYS---WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAK--LWSSSLLMCYSWSCLFLVSKVFMDL--I 155 (204)
Q Consensus 86 ~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R--~~~~~~~~~~~~~~~~~~~~~~~~l--~ 155 (204)
.. .+..... +..+....+.....+.... ...++++|..|+++| +.+.++.+....+|+.+++.+.+.. .
T Consensus 100 ~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~-p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~ 178 (477)
T TIGR01301 100 LFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQG-PCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLY 178 (477)
T ss_pred hccccccccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 00 0000011 1222222233334343333 345899999998866 5788888888899999888877654 2
Q ss_pred Hhh-------------chhHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 156 DTV-------------GSAATYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 156 ~~~-------------g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
+.. +.+..|++.++..++..++..+..||.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 179 KIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 211 4567888888888888777777788864
No 128
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.49 E-value=1.7e-12 Score=100.84 Aligned_cols=152 Identities=16% Similarity=0.102 Sum_probs=100.7
Q ss_pred hhChhHHHHhHHHHHH-hhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecC
Q psy5074 9 FSGVSALIYYTVDIFR-NAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQ 86 (204)
Q Consensus 9 ~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (204)
....+....+.|.+.+ +.|.+.+. ........+...++.++.++++||+|||+.+.....+..+.......... .
T Consensus 232 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-~-- 308 (394)
T TIGR00883 232 TTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL-D-- 308 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh-c--
Confidence 3444556678888874 47887765 66777788889999999999999999999877555544443322111110 0
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHH-HHHHHHHHHHHhHHHHHhhc-hhHHH
Q psy5074 87 GYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCY-SWSCLFLVSKVFMDLIDTVG-SAATY 164 (204)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~g-~~~~~ 164 (204)
....+...........+.+. ..+....+.+|.+|++.|+++.++.+.. ..++..++|.+.+.+.+..| |+..+
T Consensus 309 ----~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~ 383 (394)
T TIGR00883 309 ----SGSFTLFFFLVLGLALIGGM-YTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIG 383 (394)
T ss_pred ----CCchHHHHHHHHHHHHHHHH-HhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHH
Confidence 01223333333333333333 3345668899999999999999986444 55778899999999999888 76554
Q ss_pred HHHH
Q psy5074 165 GLLG 168 (204)
Q Consensus 165 ~~~~ 168 (204)
+...
T Consensus 384 ~~~~ 387 (394)
T TIGR00883 384 YYLA 387 (394)
T ss_pred HHHH
Confidence 4433
No 129
>KOG0569|consensus
Probab=99.49 E-value=6e-12 Score=99.21 Aligned_cols=143 Identities=18% Similarity=0.087 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCc
Q psy5074 34 TASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIG 113 (204)
Q Consensus 34 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
....+..+++++|++..++++||+|||..+.++.+...++...+......+ .....+....+.+...+....
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~--------~~e~li~GR~i~Gl~~gl~~~ 135 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAP--------SFEMLILGRLIVGLACGLSTG 135 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHhHHHHH
Confidence 456678888999999999999999999999999988888888877664332 334444444555444444433
Q ss_pred cchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHh-HHHHH-hhchhHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 114 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVF-MDLID-TVGSAATYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 114 ~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~-~~l~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
....|.+|+.|++.||....+......+|..++..+. +.+.. ...|++.+....++.++..+.. .+.||++
T Consensus 136 -~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l-~~~PESP 208 (485)
T KOG0569|consen 136 -LVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALL-PFLPESP 208 (485)
T ss_pred -HHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHH-hcCCCCc
Confidence 4457999999999999999999888888888774443 44443 3458776666666666555544 4589973
No 130
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.48 E-value=3.4e-12 Score=99.70 Aligned_cols=139 Identities=12% Similarity=0.006 Sum_probs=97.6
Q ss_pred HHHhHHHHHH-hhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCC
Q psy5074 15 LIYYTVDIFR-NAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQD 92 (204)
Q Consensus 15 ~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (204)
...+.|.+++ +.|.+.++ ........++.+++.++.+++.||+|||+.+..+.....+......... .
T Consensus 257 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~----------~ 326 (405)
T TIGR00891 257 IQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIG----------A 326 (405)
T ss_pred hhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhC----------C
Confidence 3445666654 46887765 6777788889999999999999999999988877665533333222110 1
Q ss_pred ccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc-hhHHH
Q psy5074 93 YSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATY 164 (204)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~ 164 (204)
..+............ ..+..+....+.+|.+|+++|+++.|+.+....+++.++|.+.+.+.+..| |+..+
T Consensus 327 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~ 398 (405)
T TIGR00891 327 NVAVLGLGLFFQQML-VQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTAL 398 (405)
T ss_pred chHHHHHHHHHHHHH-HccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhH
Confidence 222222222222222 223344566788999999999999999999999999999999999999988 65443
No 131
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.47 E-value=6.8e-12 Score=99.88 Aligned_cols=180 Identities=19% Similarity=0.211 Sum_probs=127.1
Q ss_pred HHHHHHhhChhHHHHhHHHHHH-hhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCch--HHHHHhhHHHHHHHHHHH
Q psy5074 3 LMTFQRFSGVSALIYYTVDIFR-NAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRR--FLLLTSEITMAFCQLLLV 78 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr--~~~~~~~~~~~i~~~~~~ 78 (204)
+.++....|++.+......+.+ ++|++..+ ........+.+++|+++++++.||+|.| ++++++.....+..+...
T Consensus 288 ia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~ 367 (477)
T PF11700_consen 288 IAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGL 367 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHH
Confidence 4445555677777766666665 58999877 7788889999999999999999999999 777776666643333322
Q ss_pred H--hheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH
Q psy5074 79 A--YFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID 156 (204)
Q Consensus 79 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 156 (204)
+ ...... ..+.+.......+.+...+ +..+...++.+|+.|+++.+..+|+....+...++++|.+.+.+.+
T Consensus 368 ~G~~~~~~g-----~~~~~~f~~~a~~~G~~~G-~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~ 441 (477)
T PF11700_consen 368 FGFWPSFFG-----LKSPWEFWVLAVLIGLFMG-GIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITD 441 (477)
T ss_pred HHhhhcccC-----cccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 111000 1233333333333333333 3456778899999999999999999999999999999999999999
Q ss_pred hhc-hhHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q psy5074 157 TVG-SAATYGLLGLICTLGAVFVYTRVPETKNKS 189 (204)
Q Consensus 157 ~~g-~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~ 189 (204)
..| .|..+....++.+++.++.+. .+++|+++
T Consensus 442 ~tg~~r~g~~~l~~lf~~gl~ll~~-v~~~~g~~ 474 (477)
T PF11700_consen 442 ATGSQRYGFLFLLVLFLIGLILLFF-VDVEKGRE 474 (477)
T ss_pred HhCCchhHHHHHHHHHHHHHHHHhh-ccchhhhh
Confidence 887 677777777777777665544 66665543
No 132
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.47 E-value=5.4e-12 Score=101.39 Aligned_cols=162 Identities=13% Similarity=0.020 Sum_probs=108.1
Q ss_pred HHHhHHHHH-HhhCCCCCh-hHHH-HHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCC
Q psy5074 15 LIYYTVDIF-RNAGTRIAP-STAS-IIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQ 91 (204)
Q Consensus 15 ~~~~~~~~~-~~~g~~~~~-~~~~-~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (204)
...+.+.++ ++.|++.++ .... ....++.+++.+++|+++||+|||+.+.++.++..+............
T Consensus 241 ~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~------- 313 (491)
T PRK11010 241 AMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITD------- 313 (491)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence 344555554 557888766 5554 455678899999999999999999887766655554443322111100
Q ss_pred CccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHH
Q psy5074 92 DYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLIC 171 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 171 (204)
+..+.......+.....+.+. +..+++..+..|++.+++..++.+....++..+++.+.+.+.+..||+..|.+.+++.
T Consensus 314 ~~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~ 392 (491)
T PRK11010 314 KNLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAA 392 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 112222222222222223222 2345788899999999999999999999999989899999999999988888887777
Q ss_pred HHHHHHHhhcccCC
Q psy5074 172 TLGAVFVYTRVPET 185 (204)
Q Consensus 172 ~i~~~~~~~~~~e~ 185 (204)
+++.+...+ .+++
T Consensus 393 l~~l~~~~~-~~~~ 405 (491)
T PRK11010 393 VPGLLLLLV-CRQT 405 (491)
T ss_pred HHHHHHHHH-HHhc
Confidence 777666555 3443
No 133
>PRK10504 putative transporter; Provisional
Probab=99.46 E-value=9.6e-12 Score=99.44 Aligned_cols=143 Identities=13% Similarity=0.098 Sum_probs=99.0
Q ss_pred hhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecC
Q psy5074 9 FSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQ 86 (204)
Q Consensus 9 ~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (204)
..+......+.|++++. .|.+... ........+...++.++.+++.||+|||+.+..+.....+...++......
T Consensus 274 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~--- 350 (471)
T PRK10504 274 RIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALL--- 350 (471)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcccc---
Confidence 33444556678888875 6777655 566666677777888999999999999999988888777766655543110
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhch
Q psy5074 87 GYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS 160 (204)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 160 (204)
...+.........+.+.+... +.......+..|++.|+++.++.+....++..+++.+.+.+.+..++
T Consensus 351 -----~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 351 -----GWYYLLPFVLFLQGMVNSTRF-SSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred -----ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 111111222222223333332 24456778899999999999999999999999999999988877654
No 134
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.45 E-value=8e-12 Score=97.95 Aligned_cols=157 Identities=10% Similarity=-0.016 Sum_probs=107.5
Q ss_pred HHHhHHHHHHhhCCCCCh-----hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCC
Q psy5074 15 LIYYTVDIFRNAGTRIAP-----STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYD 89 (204)
Q Consensus 15 ~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (204)
...+.|.+.++.+.+.+. .....+..++..++.+..|+++||+|||+.+..+.....+..+.....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--------- 308 (408)
T PRK09874 238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV--------- 308 (408)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh---------
Confidence 344556555554333221 223344556677888889999999999999888877666655544433
Q ss_pred CCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHH
Q psy5074 90 MQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGL 169 (204)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~ 169 (204)
+..+.......+.+.+.+. ..+.......|..|++.|++..++.+....++..++|.+.+.+.+..||+..|.+.++
T Consensus 309 --~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~ 385 (408)
T PRK09874 309 --QTPLQLGILRFLLGAADGA-LLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAG 385 (408)
T ss_pred --ccHHHHHHHHHHHHhhhHh-hHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHH
Confidence 1223322222333333332 2344456677888999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHhhccc
Q psy5074 170 ICTLGAVFVYTRVP 183 (204)
Q Consensus 170 ~~~i~~~~~~~~~~ 183 (204)
+.++..+..++..+
T Consensus 386 ~~l~~~~~~~~~~~ 399 (408)
T PRK09874 386 VVLFNAVYSWNSLR 399 (408)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887776665443
No 135
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.45 E-value=1.5e-12 Score=103.63 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=103.3
Q ss_pred ChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhc--CchHHHHHh--hHHHHHHHHHHHHhheeec
Q psy5074 11 GVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRL--GRRFLLLTS--EITMAFCQLLLVAYFVFKN 85 (204)
Q Consensus 11 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~~--~~~~~i~~~~~~~~~~~~~ 85 (204)
+.+....+.|.+.++.|.+... .....+..++.+++.++.++++||. ++|+...++ .....++.+.....
T Consensus 256 ~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----- 330 (455)
T TIGR00892 256 GFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA----- 330 (455)
T ss_pred HccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 3344556778888888887765 6777778888899999999999973 334333332 22222222222222
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc-hhHHH
Q psy5074 86 QGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATY 164 (204)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~ 164 (204)
+..+.......+.+.+.+. ..+....+..|.+|+++|+++.++.+....++..++|.+.+.+.+..+ |+..|
T Consensus 331 ------~~~~~~~i~~~~~G~~~g~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f 403 (455)
T TIGR00892 331 ------GDYTGLVIYCIFFGLSFGS-VGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIF 403 (455)
T ss_pred ------chHHHHHHHHHHHHHHhch-HHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHH
Confidence 1222323333333333332 334556788899999999999999999999999999999999988774 88888
Q ss_pred HHHHHHHHHHHHH
Q psy5074 165 GLLGLICTLGAVF 177 (204)
Q Consensus 165 ~~~~~~~~i~~~~ 177 (204)
.+.+++.+++.+.
T Consensus 404 ~~~~~~~li~~~~ 416 (455)
T TIGR00892 404 YASGSIVVSAGLF 416 (455)
T ss_pred HHhhHHHHHHHHH
Confidence 8777766665543
No 136
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.45 E-value=1e-11 Score=99.84 Aligned_cols=141 Identities=18% Similarity=0.163 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcC
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGI 112 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (204)
........+..++.++++|.++||++|||+++.+.....+....+......+. .+.+..+...++.+.+ ....
T Consensus 48 alv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~------~~~~~Ll~~~fl~g~~-~a~~ 120 (524)
T PF05977_consen 48 ALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGL------LSPWLLLILTFLLGIG-SAFF 120 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCc------CCHHHHHHHHHHHHHH-HHHH
Confidence 56666677788899999999999999999999999888776666554433221 2334444333333333 3335
Q ss_pred ccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHHHHHHHhh
Q psy5074 113 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTLGAVFVYT 180 (204)
Q Consensus 113 ~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 180 (204)
.|...+.+.|+.|+++...++++.+...++...++|.++|.+....|....|.+-++..++.......
T Consensus 121 ~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~ 188 (524)
T PF05977_consen 121 NPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLR 188 (524)
T ss_pred HHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778899999999999999999999999999999999999999999878887766655554444333
No 137
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.44 E-value=1.6e-11 Score=96.99 Aligned_cols=173 Identities=10% Similarity=0.070 Sum_probs=115.4
Q ss_pred HHHHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhh
Q psy5074 3 LMTFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYF 81 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~ 81 (204)
+.+++.+.+...++.+.|++.++ .++... .....+..+...+..+++|+++||+|+|+++.++.+.+.++........
T Consensus 259 lly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~l 337 (462)
T PRK15034 259 LLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTL 337 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777767788899999876 343322 3334556677889999999999999999999998887777765443332
Q ss_pred eeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccch---------------------hhhHhHhHHHHHHH
Q psy5074 82 VFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPL---------------------EAKLWSSSLLMCYS 140 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~---------------------~~R~~~~~~~~~~~ 140 (204)
.... ....+.............+.+.+ ..+.++.+.+|+ ++-+...|+....+
T Consensus 338 p~~~-----~~~~~~~~~~~~~l~~~~G~gng-svfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G 411 (462)
T PRK15034 338 PGTG-----SGNFIAFYAVFMGLFLTAGLGSG-STFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIG 411 (462)
T ss_pred cccc-----ccHHHHHHHHHHHHHHHhcccch-HHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHH
Confidence 1100 01122222222222233344433 344677777874 24667888999999
Q ss_pred HHHHHHHHHHhHHHHHhhc-hhHHHHHHHHHHHHHHHHHhhcc
Q psy5074 141 WSCLFLVSKVFMDLIDTVG-SAATYGLLGLICTLGAVFVYTRV 182 (204)
Q Consensus 141 ~~~~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~i~~~~~~~~~ 182 (204)
.+|+++.|.+++...+..| +...++.+.+..+++.++.+..+
T Consensus 412 ~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 412 AVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998887765 55677788888888877777654
No 138
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.43 E-value=7.8e-12 Score=98.93 Aligned_cols=168 Identities=14% Similarity=0.152 Sum_probs=108.9
Q ss_pred hHHHHhHHHHHH-hhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhh----cCchH-HHHHhhHHHHHHHHHHHHhheeec
Q psy5074 13 SALIYYTVDIFR-NAGTRIAP-STASIIVGAVQVVVSLLSSLLIDR----LGRRF-LLLTSEITMAFCQLLLVAYFVFKN 85 (204)
Q Consensus 13 ~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~----~grr~-~~~~~~~~~~i~~~~~~~~~~~~~ 85 (204)
..+..|.+.++. +.|++... +....+..+...+..++.|.++|| +|||| .++.+....++....+........
T Consensus 16 ~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~ 95 (437)
T TIGR00792 16 AIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSA 95 (437)
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCc
Confidence 344445555544 57988766 888888889999999999999998 67755 556676777766666554321110
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhcccc-chhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH-------h
Q psy5074 86 QGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEII-PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID-------T 157 (204)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~ 157 (204)
............+...+... ......++..|+. ++++|++..++.+....+|+.+++.+.+.+.. .
T Consensus 96 -----~~~~~~~~~~~~~~~~~~~~-~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~ 169 (437)
T TIGR00792 96 -----TGKLVYAYITYILLGLFYSF-VNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDK 169 (437)
T ss_pred -----chHHHHHHHHHHHHHHHHHh-hcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 00111222222333333333 2223346778876 57889999999888888887777666555543 3
Q ss_pred hchhHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 158 VGSAATYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 158 ~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
.+|+..+.+.+++..+..+..++..||++
T Consensus 170 ~g~~~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 170 FGWFMFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 57888888888888777776666677754
No 139
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.43 E-value=1.3e-11 Score=108.32 Aligned_cols=141 Identities=13% Similarity=0.060 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHH--HHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHh
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQL--LLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRI 110 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (204)
.+......+...+.++++|+++||+|||+++........+... ...... .+.+..++...+.+.+ ..
T Consensus 55 ~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~----------~s~~~l~~~~~l~gi~-~a 123 (1140)
T PRK06814 55 TLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL----------NSVPLLFAALFLMGIH-SA 123 (1140)
T ss_pred HHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHH-HH
Confidence 4455667777889999999999999999976432222222111 111110 1233333333333333 34
Q ss_pred cCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHHHHHHHhhcccCC
Q psy5074 111 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTLGAVFVYTRVPET 185 (204)
Q Consensus 111 ~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~ 185 (204)
...|...+++.|++|+++|++++++.+....++..++|.+.+.+....+|+..|.......++. ++..+.+|++
T Consensus 124 ~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 197 (1140)
T PRK06814 124 LFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLG-WLASLFIPKT 197 (1140)
T ss_pred hhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-HHHHhhCCCC
Confidence 4567888999999999999999999999999999999999999999999988773333333333 3333445554
No 140
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.42 E-value=3.4e-11 Score=93.84 Aligned_cols=156 Identities=13% Similarity=0.051 Sum_probs=117.5
Q ss_pred HhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecC
Q psy5074 8 RFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQ 86 (204)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (204)
...+......+.|.++++.|.+.+. +.......+..+++....+++.||+|+|+.+.++.+...+....+...
T Consensus 217 ~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~------ 290 (382)
T TIGR00902 217 IQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI------ 290 (382)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH------
Confidence 3444556677888888888988766 666777888888999999999999999999999999998888777654
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHH-HHHHHHHHHHHHhHHHHHhhchhHHHH
Q psy5074 87 GYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMC-YSWSCLFLVSKVFMDLIDTVGSAATYG 165 (204)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~g~~~~~~ 165 (204)
+..+..+..-.+.+..++... +....++++. |+++|+++.++.+. ...++..+++.+.|++.+..|+ ..|.
T Consensus 291 -----~~~~~~~~~q~l~g~~~~~~~-~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~ 362 (382)
T TIGR00902 291 -----EAFPLIFLLQILHCGTFAVCH-LAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFV 362 (382)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHH
Confidence 233444444455555555433 3445678887 99999999999764 4568889999999999999886 6677
Q ss_pred HHHHHHHHHHHH
Q psy5074 166 LLGLICTLGAVF 177 (204)
Q Consensus 166 ~~~~~~~i~~~~ 177 (204)
..+.+.+++.++
T Consensus 363 ~~~~~~~~~~~~ 374 (382)
T TIGR00902 363 FMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHH
Confidence 777776655443
No 141
>KOG3764|consensus
Probab=99.42 E-value=7.2e-13 Score=100.27 Aligned_cols=144 Identities=13% Similarity=0.091 Sum_probs=117.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcC
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGI 112 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (204)
++......+.+++.+++.|.+.||+|+|..++++...+....++.++.. +-+..++...+-+.+.+. .
T Consensus 109 G~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~-----------sy~~l~vAR~LQgvgsA~-~ 176 (464)
T KOG3764|consen 109 GLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN-----------SYPMLFVARSLQGVGSAF-A 176 (464)
T ss_pred hHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc-----------hhHHHHHHHHHhhhhHHH-H
Confidence 6777888889999999999999999999999999999999999988762 223334444444444333 3
Q ss_pred ccchhhhhccccchhh-hHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHHHHHHHhhcccCCCCC
Q psy5074 113 GPIPWFMMAEIIPLEA-KLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTLGAVFVYTRVPETKNK 188 (204)
Q Consensus 113 ~~~~~~~~~e~~p~~~-R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~ 188 (204)
.....++.++.+|+++ |++++|+.-.+..+|-.++|...+.+++..|.+.+|.+.++++++-..+.++.++.+|.+
T Consensus 177 ~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 177 DTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred HhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 4455678999998865 799999999999999999999999999999999999999999999888877766655433
No 142
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.42 E-value=1.6e-11 Score=97.23 Aligned_cols=117 Identities=14% Similarity=0.096 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcC
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGI 112 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (204)
........+..+++.++.++++||+|||+.+..+..+..++........ ...+.......+.+.+.+. .
T Consensus 260 ~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~g~~~~~-~ 328 (437)
T TIGR00792 260 SYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG----------SNLPLILVLIILAGFGQNF-V 328 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc----------hhHHHHHHHHHHHHHHHHH-H
Confidence 5556667888899999999999999999999888877777665554331 1222223333333333333 2
Q ss_pred ccchhhhhccccc-------hhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhch
Q psy5074 113 GPIPWFMMAEIIP-------LEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS 160 (204)
Q Consensus 113 ~~~~~~~~~e~~p-------~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 160 (204)
.+..+++.+|..| ++.+|+..++.+....++..+++.+.+.+.+..|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 329 TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3456677888765 55678999999999999999999999999887665
No 143
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.40 E-value=8.1e-11 Score=90.42 Aligned_cols=164 Identities=21% Similarity=0.157 Sum_probs=121.1
Q ss_pred HHHHHHhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHh
Q psy5074 3 LMTFQRFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAY 80 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~ 80 (204)
+..+..+.|.+....|...++++ .|++.+. .+....+.++.++|+.++|++.|| +.|+.+.....+..+....+.+.
T Consensus 218 ~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~ 296 (394)
T COG2814 218 LATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFT 296 (394)
T ss_pred HHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHh
Confidence 45667778888777777766666 7888877 889999999999999999999999 88888887777777776666555
Q ss_pred heeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccc--hhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhh
Q psy5074 81 FVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIP--LEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV 158 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 158 (204)
. .+.+.......+ .++.. .+....+..+..+ ++.+..+.++.....++|...+..+.+.+.++.
T Consensus 297 ~----------~~~~~~~~~~~~--wg~a~--~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~ 362 (394)
T COG2814 297 G----------ASPALALALLFL--WGFAF--SPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDAL 362 (394)
T ss_pred c----------chHHHHHHHHHH--HHHHh--hhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 223333333333 22222 2333333333333 577999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhc
Q psy5074 159 GSAATYGLLGLICTLGAVFVYTR 181 (204)
Q Consensus 159 g~~~~~~~~~~~~~i~~~~~~~~ 181 (204)
|+....+..+.+.+++.++.+..
T Consensus 363 g~~~~~~~~a~l~~~a~~~~~~~ 385 (394)
T COG2814 363 GYAATGWVGAALLLLALLLALLS 385 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888888777766553
No 144
>KOG2533|consensus
Probab=99.39 E-value=6.8e-12 Score=99.80 Aligned_cols=150 Identities=13% Similarity=0.064 Sum_probs=116.0
Q ss_pred hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHH
Q psy5074 26 AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTI 104 (204)
Q Consensus 26 ~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (204)
.++..++ +...++..++.+++.++++.+.||++-++.+..+.+...+..++.... ++...++...++
T Consensus 76 l~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~------------~s~~~~ialr~l 143 (495)
T KOG2533|consen 76 LKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV------------HSFPGLIALRFL 143 (495)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH------------hhhHHHHHHHHH
Confidence 3454455 788999999999999999999999997777666666665555444443 223334444444
Q ss_pred HHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHH------HhhchhHHHHHHHHHHHHHHHHH
Q psy5074 105 VAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI------DTVGSAATYGLLGLICTLGAVFV 178 (204)
Q Consensus 105 ~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~g~~~~~~~~~~~~~i~~~~~ 178 (204)
.+.+..+..|....++..++.+++|++-+++.++...+|++++..+...+. ...||++.|++-+++.++..++.
T Consensus 144 lGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~ 223 (495)
T KOG2533|consen 144 LGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVV 223 (495)
T ss_pred HHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheE
Confidence 444455556677789999999999999999999999999999998887753 34689999999999999999999
Q ss_pred hhcccCCCC
Q psy5074 179 YTRVPETKN 187 (204)
Q Consensus 179 ~~~~~e~~~ 187 (204)
++++|+.+.
T Consensus 224 f~~lp~~P~ 232 (495)
T KOG2533|consen 224 FFFLPDNPS 232 (495)
T ss_pred EEEecCChh
Confidence 988988654
No 145
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.39 E-value=1.3e-11 Score=94.33 Aligned_cols=173 Identities=17% Similarity=0.193 Sum_probs=130.4
Q ss_pred HHHHHHhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHh
Q psy5074 3 LMTFQRFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAY 80 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~ 80 (204)
+.++..+.+.-.++.+.|.++++ +|.+... ..........+.+..+.+|+++||+|.||.+......+.++.......
T Consensus 225 llY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~ 304 (417)
T COG2223 225 LLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLF 304 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcc
Confidence 45566666777789999999887 7888755 788888888899999999999999999999999998888888877655
Q ss_pred heeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc-
Q psy5074 81 FVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG- 159 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g- 159 (204)
...... ................+.+.+.+ ..+.+++.++|+ +-+...|+....+.+|+++-|...+...+..|
T Consensus 305 ~~~~~~----~~~~~~~~~~~l~l~~~~G~GnG-svfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~ 378 (417)
T COG2223 305 LTGFGH----GGSFVVFVAVFLALFVFAGLGNG-SVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGS 378 (417)
T ss_pred cccccc----CcchHHHHHHHHHHHHHhccCcc-hheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhccc
Confidence 322111 02233333333444445555544 445778888877 47789999999999999999999999999888
Q ss_pred hhHHHHHHHHHHHHHHHHHhhc
Q psy5074 160 SAATYGLLGLICTLGAVFVYTR 181 (204)
Q Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~ 181 (204)
+...|.++....+++.+..+..
T Consensus 379 ~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 379 YTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888777766553
No 146
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.38 E-value=7.8e-12 Score=100.14 Aligned_cols=154 Identities=12% Similarity=0.055 Sum_probs=93.2
Q ss_pred hHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchH-------HHHHhhHHHHHHHHHHHHhhee
Q psy5074 13 SALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRF-------LLLTSEITMAFCQLLLVAYFVF 83 (204)
Q Consensus 13 ~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~-------~~~~~~~~~~i~~~~~~~~~~~ 83 (204)
.....+.|.++.+ .|++... .....+..++..++.+++|+++||++||+ ...+...+..+........
T Consensus 269 ~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~--- 345 (476)
T PLN00028 269 LTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA--- 345 (476)
T ss_pred HHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc---
Confidence 3455677777655 6888755 77788888999999999999999998762 2222222222222221111
Q ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHH
Q psy5074 84 KNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAAT 163 (204)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 163 (204)
...........+...+.+... +..+.+..|..| +.|++..|+.+..+++++.+++.+.+ ..+..+|+..
T Consensus 346 --------~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~ 414 (476)
T PLN00028 346 --------NSLGAAIVVMILFSIFVQAAC-GATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETG 414 (476)
T ss_pred --------chHHHHHHHHHHHHHHHHHhh-hhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhH
Confidence 112222222233333332222 234566677655 68999999998888788877776654 1123458788
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy5074 164 YGLLGLICTLGAVFVYT 180 (204)
Q Consensus 164 ~~~~~~~~~i~~~~~~~ 180 (204)
|.+.+++.+++.+..++
T Consensus 415 f~~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 415 ISLMGVMIIACTLPVAF 431 (476)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88887777777665544
No 147
>KOG2504|consensus
Probab=99.37 E-value=3.3e-11 Score=96.63 Aligned_cols=156 Identities=12% Similarity=0.053 Sum_probs=120.9
Q ss_pred HHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCc
Q psy5074 15 LIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDY 93 (204)
Q Consensus 15 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (204)
+..+.+.+.++++.+.++ .+...+......+..++.+.+.||+|.|++.+.+.++..++.++..+.. .
T Consensus 65 ~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~-----------~ 133 (509)
T KOG2504|consen 65 FGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFAT-----------S 133 (509)
T ss_pred ehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHh-----------h
Confidence 335567777888887776 8888888888999999999999999999999999999999999988873 2
Q ss_pred cHHHHH-HHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHH
Q psy5074 94 SWIPIF-SVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICT 172 (204)
Q Consensus 94 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~ 172 (204)
.+..++ ...+.+.+.++.+.|.. ..++. +.+++|+.+.|+......+|.++-|.+..++.+..|||+.+.+.+.+.+
T Consensus 134 i~~l~lt~gvi~G~G~~~~~~pai-viv~~-YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l 211 (509)
T KOG2504|consen 134 LWQLYLTFGVIGGLGLGLIYLPAV-VILGT-YFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISL 211 (509)
T ss_pred HHHHHHHHHHHhhccchhhhcchh-hhhhh-HhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 222222 22334444444444443 44554 4567799999999999999999999999999999999999999888887
Q ss_pred HHHHHHhhccc
Q psy5074 173 LGAVFVYTRVP 183 (204)
Q Consensus 173 i~~~~~~~~~~ 183 (204)
-.++......|
T Consensus 212 ~~~~~~~~~rp 222 (509)
T KOG2504|consen 212 NVLVAGALLRP 222 (509)
T ss_pred HHHHHHHHcCC
Confidence 77766666555
No 148
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.36 E-value=9.6e-11 Score=91.34 Aligned_cols=153 Identities=10% Similarity=-0.036 Sum_probs=97.4
Q ss_pred HHhHHHHHH-hhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCc
Q psy5074 16 IYYTVDIFR-NAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDY 93 (204)
Q Consensus 16 ~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (204)
..|.+.+++ ..|.+.+. ........++..++.++.+++.||+|||+.+..+..+..++.+...... +.
T Consensus 219 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~----------~~ 288 (382)
T PRK10091 219 FSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG----------GM 288 (382)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH----------hh
Confidence 344454444 47888766 7778888889999999999999999999998888777776665543321 12
Q ss_pred cHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHh-hchhHHHHHHHHHHH
Q psy5074 94 SWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT-VGSAATYGLLGLICT 172 (204)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~~~~~~ 172 (204)
.+...........+......+.......+..|++.++.+. .+....+|..++|.+.+.+.+. .+++..+.+.+....
T Consensus 289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~ 366 (382)
T PRK10091 289 KTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSF 366 (382)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHH
Confidence 2222222222222222111222223445555666666543 4566788999999999999985 678888777766655
Q ss_pred HHHHHHhh
Q psy5074 173 LGAVFVYT 180 (204)
Q Consensus 173 i~~~~~~~ 180 (204)
+.......
T Consensus 367 ~~~~~~~~ 374 (382)
T PRK10091 367 AAMSSLLL 374 (382)
T ss_pred HHHHHHHH
Confidence 55544443
No 149
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.35 E-value=1.4e-10 Score=90.57 Aligned_cols=159 Identities=11% Similarity=-0.064 Sum_probs=100.4
Q ss_pred hhHHHHhHHHHHHhhCCCCCh-hHHHHHHH-HHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCC
Q psy5074 12 VSALIYYTVDIFRNAGTRIAP-STASIIVG-AVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYD 89 (204)
Q Consensus 12 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~-~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (204)
......+.+.+.+|.|++.++ ........ ...+++.++.|++.||+|+|+.+..+.....+.............
T Consensus 224 ~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~---- 299 (390)
T TIGR02718 224 AVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWL---- 299 (390)
T ss_pred HHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccc----
Confidence 344555677777888888766 55544444 456678899999999999999988776655333322221111000
Q ss_pred CCCccHHHHHHHHHHHHHHHhcCccchhhhhccccch-hhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHH
Q psy5074 90 MQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPL-EAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLG 168 (204)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 168 (204)
............+.....+... +.......+..++ +.|++..++.+....++..++|.+.+.+.+..|++..|...+
T Consensus 300 -~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~ 377 (390)
T TIGR02718 300 -APGIAVAWSCSAFGSLITGITS-VAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGT 377 (390)
T ss_pred -CCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 0111111211122222223322 2333444455554 889999999999999999999999999999999988887776
Q ss_pred HHHHHHHH
Q psy5074 169 LICTLGAV 176 (204)
Q Consensus 169 ~~~~i~~~ 176 (204)
.+.+++.+
T Consensus 378 ~~~l~a~~ 385 (390)
T TIGR02718 378 VLAVLAIL 385 (390)
T ss_pred HHHHHHHH
Confidence 66665544
No 150
>TIGR00895 2A0115 benzoate transport.
Probab=99.35 E-value=5.2e-11 Score=92.71 Aligned_cols=136 Identities=15% Similarity=0.054 Sum_probs=95.3
Q ss_pred HHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeec
Q psy5074 7 QRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKN 85 (204)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~ 85 (204)
....+.+....+.|.+.++.|.+.+. ........++..++.++.++++||+|||+.... .....+.........
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~---- 335 (398)
T TIGR00895 261 MLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALL-LLLGAVFAVLVGSTL---- 335 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH-HHHHHHHHHHHHHHh----
Confidence 34445556677888888888888765 777888888999999999999999999954443 333333333333211
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHH
Q psy5074 86 QGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDL 154 (204)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l 154 (204)
...+.......+.+.+.+. ..+....+..|.+|+++|+++.++.+....++..++|.+.+++
T Consensus 336 ------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 336 ------FSPTLLLLLGAIAGFFVNG-GQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred ------hCHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 1223333333334444333 3356678999999999999999999999999999999988764
No 151
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.35 E-value=8.7e-11 Score=90.39 Aligned_cols=132 Identities=14% Similarity=-0.017 Sum_probs=99.1
Q ss_pred HhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCcc
Q psy5074 17 YYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYS 94 (204)
Q Consensus 17 ~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 94 (204)
.+.|.+.++ .|.+..+ ........++.+++.++.+++.||++||+.+..+....+++........ +..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 301 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTP----------PNF 301 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhc----------hhH
Confidence 677888776 6887765 7777788888999999999999999999988887766666665555431 112
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc
Q psy5074 95 WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG 159 (204)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 159 (204)
+.......+.+.+.+. ..+....+..|..|+++|+++.++.+....++..+++.+.+.+.+..|
T Consensus 302 ~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 302 PLFLVLWFAIGVGYGP-INVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2223333333333333 345666889999999999999999999999999999999999988654
No 152
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.34 E-value=2.7e-11 Score=93.66 Aligned_cols=147 Identities=15% Similarity=0.093 Sum_probs=93.0
Q ss_pred HhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcC-chHHHHH-hhHHHHHHHHHHHHhhee
Q psy5074 8 RFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLG-RRFLLLT-SEITMAFCQLLLVAYFVF 83 (204)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g-rr~~~~~-~~~~~~i~~~~~~~~~~~ 83 (204)
..........+.|.++++ .|.+.++ ........+..+++.++.+++.||.. ||+.... ............... .
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 305 (379)
T TIGR00881 228 VYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL--N 305 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc--C
Confidence 333445566778887765 6887665 67777888889999999999999864 3332221 111111111111111 0
Q ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHH
Q psy5074 84 KNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAAT 163 (204)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 163 (204)
.. ...+.........+. ...+..+..+.+..|..|+++|+++.++.+....+++.++|.+.+.+.+..||+..
T Consensus 306 ~~------~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 306 PA------ANPLMDLICLFALGF-LVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred cc------hhHHHHHHHHHHHHH-HHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 00 111222222222222 22223334456789999999999999999999999999999999999999998754
No 153
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.32 E-value=8.5e-11 Score=90.00 Aligned_cols=172 Identities=14% Similarity=0.131 Sum_probs=123.7
Q ss_pred HHHHHHhhChhHHHHhHHHHHH-hhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHh
Q psy5074 3 LMTFQRFSGVSALIYYTVDIFR-NAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAY 80 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~ 80 (204)
+..+....|+++.......+-. ++|++..+ .......++..++++++.|++.||+|.|+++.++.++..+..+...+.
T Consensus 259 iA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~ 338 (438)
T COG2270 259 IARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL 338 (438)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc
Confidence 4455556677777777777766 68998876 788888999999999999999999999999998888887776665554
Q ss_pred heeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc-
Q psy5074 81 FVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG- 159 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g- 159 (204)
. ...-......+.+...+ +......+|..++.|+++-++.+|+.+..++..++.+|++.+...+..|
T Consensus 339 ~-----------~~~~f~i~gll~g~s~G-~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~ 406 (438)
T COG2270 339 E-----------GELDFWILGLLVGTSLG-GAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS 406 (438)
T ss_pred c-----------ccHHHHHHHHHHHHhcc-hHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 2 11111211122222222 3345677899999999999999999999999999999999999888766
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCCC
Q psy5074 160 SAATYGLLGLICTLGAVFVYTRVPETKN 187 (204)
Q Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~e~~~ 187 (204)
.|..+.....+..++.+.. ...|+.++
T Consensus 407 ~r~g~~~i~vll~iGl~~L-~~v~~~~~ 433 (438)
T COG2270 407 SRAGVLSIIVLLLIGLLLL-LRVKVPGR 433 (438)
T ss_pred hhhHHHHHHHHHHhhHhhE-EeecCCCC
Confidence 4445555555555554443 33565533
No 154
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.30 E-value=6.6e-10 Score=86.93 Aligned_cols=166 Identities=13% Similarity=0.030 Sum_probs=116.8
Q ss_pred hhChhHHHHhHHHHHHhhC-CCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecC
Q psy5074 9 FSGVSALIYYTVDIFRNAG-TRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQ 86 (204)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~g-~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (204)
.........|.+.++++.| .+.+. .....+..+..++.-...+++..|+|.|+++.++.+..++=..+.+...
T Consensus 220 ~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~----- 294 (400)
T PF03825_consen 220 GISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS----- 294 (400)
T ss_pred HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 3344556677788888887 55544 5556677788889999999999999999999999999998888877651
Q ss_pred CCCCCCccHHHHHHHH----HHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHH-HHHHHHHHHHHhHHHHHhhchh
Q psy5074 87 GYDMQDYSWIPIFSVC----TIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCY-SWSCLFLVSKVFMDLIDTVGSA 161 (204)
Q Consensus 87 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~g~~ 161 (204)
+..+....... +.+..++... .....|+.|..|++.|+++.++.+.. ..+|..++..+.|++.+..|.+
T Consensus 295 -----~~~~~~~~~~~l~q~lhG~tf~~~~-~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~ 368 (400)
T PF03825_consen 295 -----DPWPFIVALQLLGQLLHGLTFGLFH-AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR 368 (400)
T ss_pred -----CCcHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch
Confidence 12222222222 3444444433 24457899999999999999998776 4688999999999999987754
Q ss_pred H------HHHHHHHHHHHHHHHHhhcccCC
Q psy5074 162 A------TYGLLGLICTLGAVFVYTRVPET 185 (204)
Q Consensus 162 ~------~~~~~~~~~~i~~~~~~~~~~e~ 185 (204)
. .+.+.+++.++..++.+++.||+
T Consensus 369 ~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 369 GMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3 34445555555555555545554
No 155
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=99.30 E-value=1.1e-10 Score=85.01 Aligned_cols=139 Identities=12% Similarity=0.018 Sum_probs=97.9
Q ss_pred ChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCC
Q psy5074 11 GVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYD 89 (204)
Q Consensus 11 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (204)
..|.+..|.|++.+++|++.++ +.+.....++..+| ++.|.+.||+|.|..+.++.+...++...+.......-
T Consensus 17 t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i---- 91 (250)
T PF06813_consen 17 TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI---- 91 (250)
T ss_pred cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc----
Confidence 4478999999999999999877 77777778877764 88899999999999999999998888877765543221
Q ss_pred CCCccHHHHHHHHHHHHHHHhcC-ccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHh
Q psy5074 90 MQDYSWIPIFSVCTIVAIFRIGI-GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT 157 (204)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (204)
+..+.+.+....... +.+.++ +........+.||. +||++.|+.-....+++.+-..+...+.+.
T Consensus 92 -~~~~~~~~~~~~~l~-~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 92 -PSLPVWLMCLFLFLG-GNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred -CccchHHHHHHHHHH-cccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 112333333332222 222222 22333445578885 799999999999888888877777666554
No 156
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.30 E-value=1.1e-10 Score=93.38 Aligned_cols=168 Identities=10% Similarity=0.000 Sum_probs=104.5
Q ss_pred HHHHHHhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHH--------HHhhHHHHH
Q psy5074 3 LMTFQRFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLL--------LTSEITMAF 72 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~--------~~~~~~~~i 72 (204)
+..++...+.+.+..|+|.++++ .|.+..+ .....+..++..++.++.|+++||+++|+.. ..+......
T Consensus 268 ~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (465)
T TIGR00894 268 FAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGP 347 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 34455666667788899998866 6888766 7778888999999999999999998654321 111111111
Q ss_pred HHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhH
Q psy5074 73 CQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFM 152 (204)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~ 152 (204)
.......... . ...+..+....+...+.+. ..+..+....|..|+ .++.+.++.+..+.+++.++|.+.+
T Consensus 348 ~~~~~~~~~~--~------~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g 417 (465)
T TIGR00894 348 GIFAYALPYL--S------AAFYLTIIILTLANAVSSG-PLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAG 417 (465)
T ss_pred HHHHHHHHHc--C------CchHHHHHHHHHHHHHhhh-hhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1111111110 0 1222223223332222222 222334455677765 8999999999999999999999999
Q ss_pred HHHHhh---chhHHHHHHHHHHHHHHHHHhh
Q psy5074 153 DLIDTV---GSAATYGLLGLICTLGAVFVYT 180 (204)
Q Consensus 153 ~l~~~~---g~~~~~~~~~~~~~i~~~~~~~ 180 (204)
.+.+.. +|...|.+.++..+++.+....
T Consensus 418 ~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 418 NILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred eeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 887643 3777777777777776655443
No 157
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.28 E-value=7e-10 Score=89.44 Aligned_cols=154 Identities=19% Similarity=0.147 Sum_probs=115.0
Q ss_pred HHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCC
Q psy5074 14 ALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQ 91 (204)
Q Consensus 14 ~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (204)
.+...+|.+.++ +|.+... +.+....+++.++|+++.+++.+|+++++.+..+.+..+++.+.+++.
T Consensus 236 a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~----------- 304 (524)
T PF05977_consen 236 AVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS----------- 304 (524)
T ss_pred HHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc-----------
Confidence 344457777655 6777666 788889999999999999999999999998888888888777766654
Q ss_pred CccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHH
Q psy5074 92 DYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLIC 171 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 171 (204)
+..+.......+.+.+... ......+...+..|++.||+..++.+.....+..++..+.|.+.+..|.+..+.+.++..
T Consensus 305 ~~~~~~~~~l~l~G~~~~~-~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~l 383 (524)
T PF05977_consen 305 PSFWLALIALFLAGAAWII-ANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAAL 383 (524)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 2334444444444433333 223445778899999999999999999999999999999999999999888877666655
Q ss_pred HHHHHHHh
Q psy5074 172 TLGAVFVY 179 (204)
Q Consensus 172 ~i~~~~~~ 179 (204)
++..++..
T Consensus 384 ll~~~~~~ 391 (524)
T PF05977_consen 384 LLSALIAL 391 (524)
T ss_pred HHHHHHHH
Confidence 55554443
No 158
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.27 E-value=2.9e-10 Score=91.19 Aligned_cols=143 Identities=12% Similarity=-0.030 Sum_probs=100.7
Q ss_pred HhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeec
Q psy5074 8 RFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKN 85 (204)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~ 85 (204)
.....+....+.|.++++ .|.+..+ ........++..++.++.|++.||+|||+.+.++..+..++...+.......
T Consensus 267 ~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~- 345 (485)
T TIGR00711 267 LGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPD- 345 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCC-
Confidence 334445566788888876 6888765 7777888888999999999999999999998888877777666655221110
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhh
Q psy5074 86 QGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV 158 (204)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 158 (204)
...+.......+.+.+.+....+. .....|..|+++|+++.++.+....+|+.+++.+.+.+.++.
T Consensus 346 ------~~~~~~~~~~~l~g~g~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 346 ------TPFLAIALPQFIRGFGMGCFFMPL-TTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222333333333322223 345567789999999999999999999999999999887753
No 159
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.27 E-value=7.8e-10 Score=86.86 Aligned_cols=153 Identities=12% Similarity=-0.137 Sum_probs=94.9
Q ss_pred HHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCC
Q psy5074 14 ALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQ 91 (204)
Q Consensus 14 ~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (204)
....+.|.++++ .|.+..+ .........+..++.++.++++||++||+.+.++.....++............
T Consensus 233 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------ 306 (406)
T PRK15402 233 AWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISS------ 306 (406)
T ss_pred HHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHccc------
Confidence 334456766544 6777655 55555566678889999999999999999988887766666655554321111
Q ss_pred CccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHH
Q psy5074 92 DYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLIC 171 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 171 (204)
...+.......+.+.+.+... +........ .++++|++..+..+....++..+++.+.+.+.+..++........+..
T Consensus 307 ~~~~~~~~~~~~~g~g~~~~~-~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 384 (406)
T PRK15402 307 HAYLWLTAGLSLYAFGIGLAN-AGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANG 384 (406)
T ss_pred ccHHHHHHHHHHHHHHHHHHh-hhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHH
Confidence 122222333333333333322 222233333 344889999999999999999999999999888777644333333333
Q ss_pred HHH
Q psy5074 172 TLG 174 (204)
Q Consensus 172 ~i~ 174 (204)
++.
T Consensus 385 ~~~ 387 (406)
T PRK15402 385 LLW 387 (406)
T ss_pred HHH
Confidence 333
No 160
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.26 E-value=4.7e-10 Score=87.67 Aligned_cols=139 Identities=17% Similarity=0.214 Sum_probs=85.4
Q ss_pred HHHHhHHHHHH-hhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCC
Q psy5074 14 ALIYYTVDIFR-NAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQ 91 (204)
Q Consensus 14 ~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (204)
....+.|.+.+ +.|.+.+. ........++.+++.++.+++.||+|||+.+..+.....++...+....
T Consensus 221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~---------- 290 (392)
T PRK10473 221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP---------- 290 (392)
T ss_pred HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 34445565554 46887655 6677778888999999999999999999999888877777666655441
Q ss_pred CccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHH
Q psy5074 92 DYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGL 169 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~ 169 (204)
..............+.+.+.. .....+..|.++|+ +.......++..+++.+.+++.+..|+.......+.
T Consensus 291 -~~~~~~~~~~l~~~g~~~~~~---~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 291 -SHAVSLFGITLICAGFSVGFG---VAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI 361 (392)
T ss_pred -HHHHHHHHHHHHHHHHHHHhH---HHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 112222222222233333222 13344555655554 333444556677778888888887777543433333
No 161
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.25 E-value=5.5e-10 Score=87.45 Aligned_cols=152 Identities=11% Similarity=0.050 Sum_probs=102.2
Q ss_pred HhHHHHHHhh----CCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCC
Q psy5074 17 YYTVDIFRNA----GTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQ 91 (204)
Q Consensus 17 ~~~~~~~~~~----g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (204)
.+.|.+.++. +.+.+. +.......+...++.+..+++.||+|||+.+.++..+..+........
T Consensus 236 ~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~----------- 304 (396)
T TIGR00882 236 QQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA----------- 304 (396)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc-----------
Confidence 3455555553 233223 455666677788888999999999999999888887777765554432
Q ss_pred CccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHH-HHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHH
Q psy5074 92 DYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSL-LMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLI 170 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~ 170 (204)
...+.......+.+...... ......+..|..|++.|+++.+. .+....+++.+++.+.+++.+..|++..|.+.+++
T Consensus 305 ~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~ 383 (396)
T TIGR00882 305 TTALEVVILKMLHAFEVPFL-LVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCI 383 (396)
T ss_pred CChHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHH
Confidence 12333333333333222221 11233466777888888887776 56778899999999999999999999999888888
Q ss_pred HHHHHHHHhh
Q psy5074 171 CTLGAVFVYT 180 (204)
Q Consensus 171 ~~i~~~~~~~ 180 (204)
.++..+...+
T Consensus 384 ~~i~~~~~~~ 393 (396)
T TIGR00882 384 VLLFTLISVF 393 (396)
T ss_pred HHHHHHHHHH
Confidence 7777665443
No 162
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.25 E-value=1.6e-09 Score=84.45 Aligned_cols=150 Identities=15% Similarity=0.064 Sum_probs=101.9
Q ss_pred hhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCC
Q psy5074 12 VSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDM 90 (204)
Q Consensus 12 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (204)
......+.|.+.++.|.+.+. ........+..++..++.+++.||+|+|+.+..+.....+........
T Consensus 221 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~---------- 290 (382)
T PRK11128 221 HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST---------- 290 (382)
T ss_pred hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh----------
Confidence 344556677777888888765 666667777888889999999999999999888888777766555433
Q ss_pred CCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHH-HHHHHHHHHHHhHHHHHhhchhHHHHHHHH
Q psy5074 91 QDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCY-SWSCLFLVSKVFMDLIDTVGSAATYGLLGL 169 (204)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~ 169 (204)
++.+..+....+.+...+.. .+....+..+. +++++++..++.+.. ..++..++|.+.|.+.+..|+ ..+...++
T Consensus 291 -~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~ 366 (382)
T PRK11128 291 -TALPWLIVIQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMAL 366 (382)
T ss_pred -hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHH
Confidence 23344444444444444432 23444566676 566678888887644 455668999999999999887 45555555
Q ss_pred HHHHHH
Q psy5074 170 ICTLGA 175 (204)
Q Consensus 170 ~~~i~~ 175 (204)
+.+++.
T Consensus 367 ~~~~~~ 372 (382)
T PRK11128 367 VALPAL 372 (382)
T ss_pred HHHHHH
Confidence 554443
No 163
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.25 E-value=8.5e-10 Score=86.60 Aligned_cols=151 Identities=16% Similarity=0.083 Sum_probs=90.0
Q ss_pred HHHHHHhhCCCCCh-hHHHHH-HHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHH
Q psy5074 19 TVDIFRNAGTRIAP-STASII-VGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWI 96 (204)
Q Consensus 19 ~~~~~~~~g~~~~~-~~~~~~-~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 96 (204)
.|.+.++.|.+.+. ...... .....+++.++.+++.||+|||+.+..+.....+............ ...+.
T Consensus 233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~-------~~~~~ 305 (402)
T PRK11902 233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTP-------KHLWT 305 (402)
T ss_pred HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-------CcHHH
Confidence 34444557887655 444433 3445789999999999999999988776666555544332211100 12222
Q ss_pred HHHHHHHHHHHHHh---cCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHH
Q psy5074 97 PIFSVCTIVAIFRI---GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTL 173 (204)
Q Consensus 97 ~~~~~~~~~~~~~~---~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i 173 (204)
......+.....+. ........++++.+|.+.++ +.+....++...++.+.+.+.+..||+..|...+.++++
T Consensus 306 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~ 381 (402)
T PRK11902 306 MALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYA----LLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALP 381 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 22222211111111 12234456777888876654 344444556665667899999999999888888777777
Q ss_pred HHHHHhh
Q psy5074 174 GAVFVYT 180 (204)
Q Consensus 174 ~~~~~~~ 180 (204)
+.++.+.
T Consensus 382 ~~~~~~~ 388 (402)
T PRK11902 382 GLALLWL 388 (402)
T ss_pred HHHHHHH
Confidence 7655544
No 164
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.24 E-value=2.6e-09 Score=86.17 Aligned_cols=139 Identities=11% Similarity=-0.018 Sum_probs=98.8
Q ss_pred hhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecC
Q psy5074 9 FSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQ 86 (204)
Q Consensus 9 ~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (204)
....+...++.|.++++ .|.+..+ +.......+...++.++.|++.||+|||+.+..+.....++...+..... .
T Consensus 272 ~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~-~-- 348 (495)
T PRK14995 272 MITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDF-S-- 348 (495)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC-C--
Confidence 33445566778887776 6888766 77788888889999999999999999999888887777666655543311 0
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH
Q psy5074 87 GYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID 156 (204)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 156 (204)
...+.......+.+.+.+... +.......+..|+++|+.+.++.+....+|+.+++.+.+.+.+
T Consensus 349 -----~~~~~~~~~~~l~G~g~g~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 349 -----TQQWQAWGLMALLGFSAASAL-LASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred -----CchHHHHHHHHHHHHhHHHHH-HHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222333334444444332 3344567788999999999999999999999999988887765
No 165
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.24 E-value=8.3e-10 Score=85.17 Aligned_cols=138 Identities=13% Similarity=-0.022 Sum_probs=94.1
Q ss_pred hhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhc-CchHHHHHhhHHHHHHHHHHHHhheeecC
Q psy5074 9 FSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRL-GRRFLLLTSEITMAFCQLLLVAYFVFKNQ 86 (204)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (204)
....+....|.|.++++.|.+.+. ........++.++++++.|++.||+ +||+.+..+.....++...+....
T Consensus 210 ~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~----- 284 (355)
T TIGR00896 210 SGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP----- 284 (355)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh-----
Confidence 344456677899999888888766 7778888899999999999999999 566666666666666655554331
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhc-cccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc
Q psy5074 87 GYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMA-EIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG 159 (204)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 159 (204)
...... ...+.+.+.+. ..+....... +..+++++++..++.+....++..++|.+.+++.+..|
T Consensus 285 ------~~~~~~-~~~l~g~~~g~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 285 ------MHGLWA-WALVLGLGQGG-AFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred ------hhHHHH-HHHHHHHhhhh-HhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111111 12222222222 2233334444 44456778899999999999999999999999998876
No 166
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.24 E-value=2e-14 Score=114.11 Aligned_cols=143 Identities=18% Similarity=0.122 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcC
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGI 112 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (204)
.+......++..+|+++.|+++||+|||+.++++..+..++.++..+..... ..+.......+.+.+.+. .
T Consensus 49 ~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~R~~~G~~~g~-~ 119 (451)
T PF00083_consen 49 SLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYN--------NFWMLLIGRFLIGFGIGG-A 119 (451)
T ss_pred HHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccc--------cccccccccccccccccc-c
Confidence 4667788889999999999999999999999999999999988887763110 223333333444444333 3
Q ss_pred ccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH---hhchhHHHHHHHHHHHHHHHHHhhcccCC
Q psy5074 113 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID---TVGSAATYGLLGLICTLGAVFVYTRVPET 185 (204)
Q Consensus 113 ~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~g~~~~~~~~~~~~~i~~~~~~~~~~e~ 185 (204)
.+....++.|..|+++|+...++.+....+|..++..+...... ..+||..+.+..++.++..+.. .+.||+
T Consensus 120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pES 194 (451)
T PF00083_consen 120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPES 194 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 44667899999999999999999888877776666655443322 2458887777666666554444 458886
No 167
>PRK09848 glucuronide transporter; Provisional
Probab=99.23 E-value=7.2e-10 Score=88.24 Aligned_cols=142 Identities=11% Similarity=-0.003 Sum_probs=89.8
Q ss_pred hhChhHHHHhHHHHHHh-hCCCCChh-HHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecC
Q psy5074 9 FSGVSALIYYTVDIFRN-AGTRIAPS-TASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQ 86 (204)
Q Consensus 9 ~~~~~~~~~~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (204)
..+........|++.++ .|.+.... .......+..+++.++.+++.||+|+|+.+.++..+..++.+.+.....
T Consensus 241 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~---- 316 (448)
T PRK09848 241 LISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSV---- 316 (448)
T ss_pred HHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc----
Confidence 33334444455655554 45443333 2233335567788999999999999999999988877776665543210
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchh-------hhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc
Q psy5074 87 GYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLE-------AKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG 159 (204)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 159 (204)
...+.......+...+.+.. .+..++..+|..|.+ .+|...++.+....++..+++.+.+.+.+..|
T Consensus 317 -----~~~~~~~~~~~l~g~G~~~~-~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 317 -----WSLPVALVALAIASIGQGVT-MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred -----hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 12232222233333333332 345667777877654 45888999999999999999999888876655
Q ss_pred h
Q psy5074 160 S 160 (204)
Q Consensus 160 ~ 160 (204)
+
T Consensus 391 ~ 391 (448)
T PRK09848 391 Y 391 (448)
T ss_pred C
Confidence 4
No 168
>PRK09669 putative symporter YagG; Provisional
Probab=99.22 E-value=1e-09 Score=87.25 Aligned_cols=166 Identities=17% Similarity=0.143 Sum_probs=102.1
Q ss_pred HHHHhHHHHHH-hhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhh----cCchHH-HHHhhHHHHHHHHHHHHhheeecC
Q psy5074 14 ALIYYTVDIFR-NAGTRIAP-STASIIVGAVQVVVSLLSSLLIDR----LGRRFL-LLTSEITMAFCQLLLVAYFVFKNQ 86 (204)
Q Consensus 14 ~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~-~~~~~~~~~i~~~~~~~~~~~~~~ 86 (204)
.+..|++.++. ..|++... +.+..+..+...+..++.|.++|| +||||. ++.+.+..++...+.........
T Consensus 27 ~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~- 105 (444)
T PRK09669 27 TVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGA- 105 (444)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCc-
Confidence 33455555544 47998766 788888888899999999999998 777554 55666666666554433321100
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhcccc-chhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH-------hh
Q psy5074 87 GYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEII-PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID-------TV 158 (204)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~ 158 (204)
....+...+...+...++.. ......++.+|+. ++++|.+..++......+|+.+++.+...+.. ..
T Consensus 106 ----~~~~~~~~~~~~l~~~~~t~-~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~ 180 (444)
T PRK09669 106 ----TGKIIYACVTYILLSLVYTA-INVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQK 180 (444)
T ss_pred ----chHHHHHHHHHHHHHHHHHh-hcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence 01112223333333334443 3333457888887 56889998888888888887777665444333 23
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcccCC
Q psy5074 159 GSAATYGLLGLICTLGAVFVYTRVPET 185 (204)
Q Consensus 159 g~~~~~~~~~~~~~i~~~~~~~~~~e~ 185 (204)
+|+..+.+++++..+..+..++..+|.
T Consensus 181 g~~~~~~i~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 181 GYFYAMMVMGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence 566666677777666665555555554
No 169
>KOG0252|consensus
Probab=99.22 E-value=1.9e-10 Score=88.93 Aligned_cols=104 Identities=13% Similarity=0.017 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcC
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGI 112 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (204)
...+....++.++|+++.|++.||+|||+++....+++.++.+..+.....+. +..-.+.+.....+.+..-.+-
T Consensus 87 ~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~-----~~~~m~~L~~~R~~LGiGIGGD 161 (538)
T KOG0252|consen 87 ALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTS-----PLGVMMTLCFFRFLLGIGIGGD 161 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCC-----CcchhhHHHHHHHHhhccccCC
Confidence 67888889999999999999999999999999999999999986554432221 0011222222222222222245
Q ss_pred ccchhhhhccccchhhhHhHhHHHHHHHH
Q psy5074 113 GPIPWFMMAEIIPLEAKLWSSSLLMCYSW 141 (204)
Q Consensus 113 ~~~~~~~~~e~~p~~~R~~~~~~~~~~~~ 141 (204)
.|+..++++|..-++.||+-.+....+..
T Consensus 162 YPlSAtI~SE~an~~~RGa~iaavFa~Qg 190 (538)
T KOG0252|consen 162 YPLSATIMSESANKKTRGAFIAAVFAMQG 190 (538)
T ss_pred CcchHHHhhhhhhhccccceeEEEEEecc
Confidence 68888999999999999987776544433
No 170
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.21 E-value=2.5e-09 Score=81.11 Aligned_cols=140 Identities=11% Similarity=0.104 Sum_probs=97.1
Q ss_pred ChhHHHHhHHHHHHh---hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecC
Q psy5074 11 GVSALIYYTVDIFRN---AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQ 86 (204)
Q Consensus 11 ~~~~~~~~~~~~~~~---~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (204)
.-.....|.+.++++ .|++.+. .........+..+|.++.+++.||+|+|+.+.++..+..++..+....
T Consensus 155 ~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~------ 228 (310)
T TIGR01272 155 AEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT------ 228 (310)
T ss_pred HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc------
Confidence 345677888888865 3777665 777888888999999999999999999998887777666665444332
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHH
Q psy5074 87 GYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYG 165 (204)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~ 165 (204)
..........+.+.+.+. ..|...+...+.+|++ .+++.++. ..+.+|+.+.|.+.+.+.+..|.+.+++
T Consensus 229 ------~~~~~~~~~~l~g~~~s~-i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 229 ------HGYVAMWFVLALGLFNSI-MFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred ------CCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 111122222333333333 3455556677777764 44555664 5678899999999999999888877765
No 171
>KOG4686|consensus
Probab=99.20 E-value=2.4e-10 Score=83.54 Aligned_cols=163 Identities=11% Similarity=0.123 Sum_probs=106.3
Q ss_pred HHHHhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhe
Q psy5074 5 TFQRFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFV 82 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~ 82 (204)
+++.......+....|.++++ +|++..+ +.+.+.......+.+++.|.++||+||+-.++.+..+..+..-.......
T Consensus 273 cv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~ 352 (459)
T KOG4686|consen 273 CVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF 352 (459)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh
Confidence 334444444455556666655 8998855 66677777778889999999999999998877665555544444332211
Q ss_pred eecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc---
Q psy5074 83 FKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG--- 159 (204)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g--- 159 (204)
.+++.....+. ..+.. .....|..++.+.|++.-|++.++.+...++|-.+.|.+.+.+.+.-|
T Consensus 353 ---------lsPy~~m~~lG---Lsysl-lAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~ 419 (459)
T KOG4686|consen 353 ---------LSPYTSMTFLG---LSYSL-LACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYD 419 (459)
T ss_pred ---------ccHHHHHHHHh---hhHHH-HHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchh
Confidence 23444333333 22222 122356677888999999999999999999999999999999988655
Q ss_pred hhHHH-HHHHHHHHHHHHHHhh
Q psy5074 160 SAATY-GLLGLICTLGAVFVYT 180 (204)
Q Consensus 160 ~~~~~-~~~~~~~~i~~~~~~~ 180 (204)
|--.| ..+..+.+....+.+.
T Consensus 420 ~le~ffl~~~~~aL~svgil~~ 441 (459)
T KOG4686|consen 420 NLEAFFLIIGLMALTSVGILFY 441 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHhh
Confidence 22233 3444444444444443
No 172
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.20 E-value=1.3e-09 Score=95.84 Aligned_cols=150 Identities=11% Similarity=-0.093 Sum_probs=100.5
Q ss_pred hHHHHhHHHHHHh-hCCCCC-h-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCC
Q psy5074 13 SALIYYTVDIFRN-AGTRIA-P-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYD 89 (204)
Q Consensus 13 ~~~~~~~~~~~~~-~g~~~~-~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (204)
.....+.|.++++ +|.+.. . ++......++.+++.++.++++||+++|+.+.++.++..++.+.+...
T Consensus 249 ~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--------- 319 (1146)
T PRK08633 249 QLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA--------- 319 (1146)
T ss_pred HHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh---------
Confidence 3455566666654 788876 5 777778888889999999999999999998888777777666665543
Q ss_pred CCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHh-hchhHHHHHHH
Q psy5074 90 MQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT-VGSAATYGLLG 168 (204)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~~ 168 (204)
...+..++...+.+.+.+.. .+...+++.|..|++.|+++.++.+....++..+++.+.+.+... .++...+.+.+
T Consensus 320 --~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~ 396 (1146)
T PRK08633 320 --PSLASVLVLFFLFGFSAGLF-IVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIA 396 (1146)
T ss_pred --hhHHHHHHHHHHHHHHHHHh-hHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 12223333333333333332 334567889999999999999999999988887777666554331 23434444444
Q ss_pred HHHHHH
Q psy5074 169 LICTLG 174 (204)
Q Consensus 169 ~~~~i~ 174 (204)
.+.++.
T Consensus 397 ~~~~~~ 402 (1146)
T PRK08633 397 LVTLIG 402 (1146)
T ss_pred HHHHHH
Confidence 444333
No 173
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.19 E-value=2.9e-09 Score=82.71 Aligned_cols=141 Identities=16% Similarity=0.060 Sum_probs=89.7
Q ss_pred ChhHHHHhHHHHHH-hhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCC
Q psy5074 11 GVSALIYYTVDIFR-NAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGY 88 (204)
Q Consensus 11 ~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (204)
..+....+.|.+++ +.|.+.+. ........++.+++.++.+++.||+|||+.+..+.....+....+.......
T Consensus 221 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 296 (385)
T TIGR00710 221 GFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILG---- 296 (385)
T ss_pred HHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 33455566777765 57887655 6777778888999999999999999999988887777666665554332110
Q ss_pred CCCCccHHH-HHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhch
Q psy5074 89 DMQDYSWIP-IFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS 160 (204)
Q Consensus 89 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 160 (204)
...+.. .......+.+.+. ..+.......|..| ++|+++.++.+.....++.+.+.+.+.+.+..++
T Consensus 297 ---~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 364 (385)
T TIGR00710 297 ---LGSWAMIIGPMMFVGIGNSM-ISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGNTAW 364 (385)
T ss_pred ---cchHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccccChH
Confidence 011222 2222223233332 23455567778877 5699999999888877666666666644333333
No 174
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.17 E-value=2.1e-09 Score=84.86 Aligned_cols=164 Identities=7% Similarity=-0.007 Sum_probs=93.0
Q ss_pred HHHHHHhhChhHHHHhHHHHH-HhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCc-hHHHHHhhHHHHHHHHHHHH
Q psy5074 3 LMTFQRFSGVSALIYYTVDIF-RNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGR-RFLLLTSEITMAFCQLLLVA 79 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~i~~~~~~~ 79 (204)
.+.+..+........+++.++ ++.|++..+ ++......++.++++++.|.++||+|| |+.+.++.....+.......
T Consensus 9 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~ 88 (418)
T TIGR00889 9 FMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ 88 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655555555 447898877 899999999999999999999999965 66777766666665555443
Q ss_pred hheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccch----hhhhc----cccchhhhHhHhHHHHHHHHHHHHHHHHHh
Q psy5074 80 YFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIP----WFMMA----EIIPLEAKLWSSSLLMCYSWSCLFLVSKVF 151 (204)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~ 151 (204)
. ++.+.......+....... ..+.. ..+.. |......|.+..| .+|..+++.+.
T Consensus 89 ~-----------~~~~~~~~~~~l~~~~~~~-~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~ 150 (418)
T TIGR00889 89 V-----------TTPAGMFPVLLANSLAYMP-TIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAV 150 (418)
T ss_pred h-----------cCHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHH
Confidence 3 1222222222222222111 11111 12222 2232233444443 35667777777
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 152 MDLIDTVGSAATYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 152 ~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
+.+....+| .+|++.++..++..+.. +..||++
T Consensus 151 g~l~~~~~~-~~f~~~~~~~~~~~~~~-~~~~e~~ 183 (418)
T TIGR00889 151 SLLDIELSN-IQLYITAGSSALLGVFA-LTLPDIP 183 (418)
T ss_pred HHhcccchh-HHHHHHHHHHHHHHHHH-hcCCCCC
Confidence 766332234 34666666555555443 3467753
No 175
>PRK11043 putative transporter; Provisional
Probab=99.17 E-value=4.5e-09 Score=82.40 Aligned_cols=138 Identities=17% Similarity=0.072 Sum_probs=87.6
Q ss_pred hHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCC
Q psy5074 13 SALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQ 91 (204)
Q Consensus 13 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (204)
.....+.|.+.++.|.+... ........++..++.+..+++.||++||+..........++...+........
T Consensus 220 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 293 (401)
T PRK11043 220 FAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSH------ 293 (401)
T ss_pred HHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 44566788888888887655 55556666778889999999999999998765555554444433322211100
Q ss_pred CccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhh
Q psy5074 92 DYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV 158 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 158 (204)
...+...........+.+. ..+.......|..| ++|+++.++.+.....++..++.+.+.+.+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 358 (401)
T PRK11043 294 PSLVPLLIPFCVMAAANGA-IYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTP 358 (401)
T ss_pred CcHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 1222222222333333332 23444455566666 57999999999988888888888888886643
No 176
>KOG2504|consensus
Probab=99.16 E-value=1.4e-10 Score=93.11 Aligned_cols=164 Identities=15% Similarity=0.213 Sum_probs=121.8
Q ss_pred HHHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCc--hHHHHHhhHHHHHHHHHHHHh
Q psy5074 4 MTFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGR--RFLLLTSEITMAFCQLLLVAY 80 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~gr--r~~~~~~~~~~~i~~~~~~~~ 80 (204)
.......+.+....++|.+.++.|++.+. .....+.++..+++.++.|+++|+... +....++.+..+++...+...
T Consensus 306 ~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~ 385 (509)
T KOG2504|consen 306 SNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA 385 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666777788899998999999876 888899999999999999999999884 345555666666665444444
Q ss_pred heeecCCCCCCCccHHHHHHHH-HHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc
Q psy5074 81 FVFKNQGYDMQDYSWIPIFSVC-TIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG 159 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 159 (204)
..+..+...+ +++...+ .........+.|+.+.++-..+.|+......++..++|++.+++.+..+
T Consensus 386 ------------~~~~~l~~~~~~fG~~~g-~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg 452 (509)
T KOG2504|consen 386 ------------TTYVGLIVFSILFGFCVG-SFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG 452 (509)
T ss_pred ------------ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC
Confidence 2233333333 3333332 2334455688999999999999999999999999999999999999887
Q ss_pred -hhHHHHHHHHHHHHHHHHHhh
Q psy5074 160 -SAATYGLLGLICTLGAVFVYT 180 (204)
Q Consensus 160 -~~~~~~~~~~~~~i~~~~~~~ 180 (204)
|...|+..+...+++....++
T Consensus 453 ~Y~~~f~~~g~~~~~s~~~~~~ 474 (509)
T KOG2504|consen 453 NYDHAFYFCGLCFLLSAVLLLI 474 (509)
T ss_pred CeeeehhhcChHHHHHHHHHHH
Confidence 777888888877777655444
No 177
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.16 E-value=1.9e-09 Score=86.45 Aligned_cols=167 Identities=10% Similarity=0.130 Sum_probs=99.1
Q ss_pred hHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhh----hcCch-HHHHHhhHHHHHHHHHHHHhheeec
Q psy5074 13 SALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLID----RLGRR-FLLLTSEITMAFCQLLLVAYFVFKN 85 (204)
Q Consensus 13 ~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d----~~grr-~~~~~~~~~~~i~~~~~~~~~~~~~ 85 (204)
..+..|++.++.+ .|++... +.+..+.-+...+..++.|.++| |+||| +.++++...+++...++.......+
T Consensus 23 ~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~ 102 (473)
T PRK10429 23 GIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEG 102 (473)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCc
Confidence 4455566666655 5888766 77777888888999999999999 56985 5555676666666555432210000
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhcccc-chhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHh-------
Q psy5074 86 QGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEII-PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT------- 157 (204)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~------- 157 (204)
........+...++..++... .....++..|+. ++++|.+..++......+++.+.+.+...+.+.
T Consensus 103 -----~~~~~~~~~~~~l~~~~~t~~-~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~ 176 (473)
T PRK10429 103 -----TAQYVFVCVTYILWGMTYTIM-DIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRG 176 (473)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHH-cchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence 001112222223333444432 333457889988 589999999987777777766655544433222
Q ss_pred hchhHHHHHHHHHHHHHHHHHhhcccCC
Q psy5074 158 VGSAATYGLLGLICTLGAVFVYTRVPET 185 (204)
Q Consensus 158 ~g~~~~~~~~~~~~~i~~~~~~~~~~e~ 185 (204)
.+|+....+.+++..+..+..++..||.
T Consensus 177 ~g~~~~~~i~~~~~~~~~~~~~~~~~e~ 204 (473)
T PRK10429 177 FGFQMFTLVLIAFFIVSTIITLRNVHEV 204 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 2344455555555555555555545664
No 178
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.15 E-value=1.2e-08 Score=79.90 Aligned_cols=155 Identities=15% Similarity=0.097 Sum_probs=96.4
Q ss_pred hhChhHHHHhH-HHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecC
Q psy5074 9 FSGVSALIYYT-VDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQ 86 (204)
Q Consensus 9 ~~~~~~~~~~~-~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (204)
+.+.+....+. |.+.++.|++.+. ........++.+++.++.+++.||.+ |+.++.+...............
T Consensus 229 ~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~----- 302 (394)
T PRK10213 229 FAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG----- 302 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh-----
Confidence 33334444454 7777778888766 67777778889999999999999954 4444444444333333322221
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHH
Q psy5074 87 GYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGL 166 (204)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 166 (204)
...+.......+.+.+++. ..+....++.+..|+ ++++..+.......++..+++.+.+++.+..|++..+..
T Consensus 303 -----~~~~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~ 375 (394)
T PRK10213 303 -----SDKIVATGVAIIWGLTFAL-VPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLML 375 (394)
T ss_pred -----hhHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHH
Confidence 1223333333334434333 233444566777774 466677777777889999999999999999888777766
Q ss_pred HHHHHHHHHH
Q psy5074 167 LGLICTLGAV 176 (204)
Q Consensus 167 ~~~~~~i~~~ 176 (204)
.+.+..+..+
T Consensus 376 ~~~~~~~~~~ 385 (394)
T PRK10213 376 SGTLMLLTAL 385 (394)
T ss_pred HHHHHHHHHH
Confidence 6555444433
No 179
>PRK10054 putative transporter; Provisional
Probab=99.14 E-value=2.1e-09 Score=84.26 Aligned_cols=135 Identities=11% Similarity=0.028 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCc
Q psy5074 34 TASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIG 113 (204)
Q Consensus 34 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (204)
.................+++.||.+||+.+..+.....+......... +..+...........+.. ...
T Consensus 248 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~-~~~ 316 (395)
T PRK10054 248 VVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG----------NSLLLWGMSAAVFTVGEI-IYA 316 (395)
T ss_pred HHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc----------hHHHHHHHHHHHHHHHHH-HHH
Confidence 333444444456667888999999999998888777766665554321 112222222233333322 223
Q ss_pred cchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHHHHHHHhh
Q psy5074 114 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTLGAVFVYT 180 (204)
Q Consensus 114 ~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 180 (204)
|.....+.|..|++.|++..+..+ ...+|..++|.+.+.+.+..|....|.+.+....+..+....
T Consensus 317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 382 (395)
T PRK10054 317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLK 382 (395)
T ss_pred hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHh
Confidence 455677889999999999988654 567899999999999999998877776665555555544443
No 180
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.14 E-value=1.7e-09 Score=86.49 Aligned_cols=167 Identities=13% Similarity=0.001 Sum_probs=102.4
Q ss_pred HHHHhhChhHHHHhHHHHHH-hhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcC-----chHHHHHhhHHHH-HHHHH
Q psy5074 5 TFQRFSGVSALIYYTVDIFR-NAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLG-----RRFLLLTSEITMA-FCQLL 76 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g-----rr~~~~~~~~~~~-i~~~~ 76 (204)
++.+... +......+.+++ ++|++..+ +.......+...+-.+ +|.++||++ ||+.++++.++.. +....
T Consensus 35 y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~ 112 (468)
T TIGR00788 35 LFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGL 112 (468)
T ss_pred HHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHh
Confidence 4555555 444444555555 57999876 5667777777666544 999999997 6666666665553 22211
Q ss_pred HHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhH---hHHHHHHHHHHHHHHHHHhHH
Q psy5074 77 LVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWS---SSLLMCYSWSCLFLVSKVFMD 153 (204)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~---~~~~~~~~~~~~~~~~~~~~~ 153 (204)
+... +..........................+..|..+ |++... .++......+|..+++.+.+.
T Consensus 113 l~~~-----------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~ 180 (468)
T TIGR00788 113 LPGK-----------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGP 180 (468)
T ss_pred cccc-----------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHH
Confidence 1111 1111122212222222233345567789999988 555443 333444445789999999999
Q ss_pred HHHhhchhHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 154 LIDTVGSAATYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 154 l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
+.+..+|+..|.+.+.+.++..+. .++.||++
T Consensus 181 l~~~~~~~~~f~~~a~l~ll~~~~-~~~~~E~~ 212 (468)
T TIGR00788 181 LLDKTLTRILFLITAALLLLQLFV-SNLSKERR 212 (468)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHH-HHhccccc
Confidence 999999999998888777777433 44477764
No 181
>KOG0255|consensus
Probab=99.13 E-value=1.8e-08 Score=81.78 Aligned_cols=156 Identities=17% Similarity=0.094 Sum_probs=108.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHH
Q psy5074 28 TRIAPSTASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAI 107 (204)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (204)
++.+...................+...|+.|||.....+.....++.+..+...... ..+.......+...+
T Consensus 348 lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 419 (521)
T KOG0255|consen 348 LGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDL--------GGWLHWILPLLGKFF 419 (521)
T ss_pred cCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccc--------hhHHHHHHHHHHHHH
Confidence 333334445555557777778888999999999999999999999888888764321 111333344444444
Q ss_pred HHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHHHHHHHhhcccCCCC
Q psy5074 108 FRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTLGAVFVYTRVPETKN 187 (204)
Q Consensus 108 ~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~ 187 (204)
.+.++. ..+.+.+|++|+..|..+.+..+....+++.++|.+...... ......+..++....+.......++|||++
T Consensus 420 ~~~~~~-~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~ 497 (521)
T KOG0255|consen 420 IGSAFN-LIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKG 497 (521)
T ss_pred HHHHHH-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCC
Confidence 455555 347899999999999999999999999999999887655444 332233333566666666666667999998
Q ss_pred CCHHHH
Q psy5074 188 KSFEAI 193 (204)
Q Consensus 188 ~~~~~~ 193 (204)
+.+.+.
T Consensus 498 ~~l~~t 503 (521)
T KOG0255|consen 498 KPLPGT 503 (521)
T ss_pred CCCchh
Confidence 876543
No 182
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.13 E-value=7.2e-09 Score=80.48 Aligned_cols=133 Identities=14% Similarity=0.133 Sum_probs=77.8
Q ss_pred hhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecC
Q psy5074 9 FSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQ 86 (204)
Q Consensus 9 ~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (204)
+.+.+....+.|.++.+ .|.+.++ ........+..+++.++.+++.||+|||+.+..+.....+...........+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~-- 284 (377)
T PRK11102 207 FAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLD-- 284 (377)
T ss_pred HHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 33444455555665554 6887655 6777788888999999999999999999998887766544433332221100
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHH-HHHHHHHHH
Q psy5074 87 GYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSW-SCLFLVSKV 150 (204)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~-~~~~~~~~~ 150 (204)
...+.............+. ..+....+..|..| +.|+++.++.+.... ++..+++.+
T Consensus 285 -----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 285 -----LGFWALVVGVAAFVGCVSM-ISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred -----hhHHHHHHHHHHHHHHHHH-hhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222222222222222 12233356677777 789999988766543 344444443
No 183
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.13 E-value=5.9e-09 Score=81.88 Aligned_cols=150 Identities=9% Similarity=-0.062 Sum_probs=92.6
Q ss_pred HHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhh-hcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCc
Q psy5074 16 IYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLID-RLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDY 93 (204)
Q Consensus 16 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d-~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (204)
..+.|.+.++.+.++.. .............+....++..| |++.|+.+..+.....+....+... +.
T Consensus 228 ~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~-----------~~ 296 (400)
T PRK11646 228 MLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV-----------SN 296 (400)
T ss_pred HHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-----------hh
Confidence 45678877776555444 55555555555555555566555 5666666666666666665555433 12
Q ss_pred cHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc----hhHHHHHHHH
Q psy5074 94 SWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG----SAATYGLLGL 169 (204)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g----~~~~~~~~~~ 169 (204)
.+.......+...+... ..|....+..|..|+++|+++.++.+....++..++|.+.+.+.+..+ ....+.....
T Consensus 297 ~~~~~~~~~l~~~g~~~-~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~ 375 (400)
T PRK11646 297 LQQLFTLICLFYIGSII-AEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGI 375 (400)
T ss_pred HHHHHHHHHHHHHHHHH-HHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHH
Confidence 22222222223333222 234556788899999999999999999999999999999999988743 2244444444
Q ss_pred HHHHHHHH
Q psy5074 170 ICTLGAVF 177 (204)
Q Consensus 170 ~~~i~~~~ 177 (204)
..++..+.
T Consensus 376 ~~~~~~~~ 383 (400)
T PRK11646 376 IGLITLLA 383 (400)
T ss_pred HHHHHHHH
Confidence 44444433
No 184
>PRK09669 putative symporter YagG; Provisional
Probab=99.12 E-value=6e-09 Score=82.90 Aligned_cols=118 Identities=13% Similarity=0.071 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcC
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGI 112 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (204)
........+..+++.+++++++||+|||+.+..+.....+.......... ...+.......+.+.+.+. .
T Consensus 267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~i~g~~~~~-~ 336 (444)
T PRK09669 267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPP---------SNVWLIFALNILFNFIQNL-T 336 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCc---------chHHHHHHHHHHHHHHHHH-H
Confidence 33444555667788889999999999999988776655544433332210 1222333333333444333 3
Q ss_pred ccchhhhhccccch-------hhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhch
Q psy5074 113 GPIPWFMMAEIIPL-------EAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS 160 (204)
Q Consensus 113 ~~~~~~~~~e~~p~-------~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 160 (204)
.+..+++.+|..+. +..+...+..+....++..+++.+.+.+.+..|+
T Consensus 337 ~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 337 TPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46778888888752 2334567788888899999999999998887655
No 185
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.12 E-value=7.4e-10 Score=86.61 Aligned_cols=144 Identities=17% Similarity=0.126 Sum_probs=101.9
Q ss_pred CCCCCh-hHHHHHHHHHHHHHHHHHHHhhhh-cCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHH
Q psy5074 27 GTRIAP-STASIIVGAVQVVVSLLSSLLIDR-LGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTI 104 (204)
Q Consensus 27 g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (204)
|+|+++ ......+...--+..+++|+++|| .|+|+.+..+.++..++-+.++.... .......+.+.+.
T Consensus 57 g~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~---------~~~~gl~i~L~~I 127 (498)
T COG3104 57 GFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSV---------SGPGGLYIGLALI 127 (498)
T ss_pred CcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccc---------ccccHHHHHHHHH
Confidence 377654 333333333344678899999999 59999999999999999988876520 1122223333333
Q ss_pred HHHHHhcCccchhhhhccccchh--hhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHHHHHHHhh
Q psy5074 105 VAIFRIGIGPIPWFMMAEIIPLE--AKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTLGAVFVYT 180 (204)
Q Consensus 105 ~~~~~~~~~~~~~~~~~e~~p~~--~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 180 (204)
..+.+ ..-+....+..|++|++ +|-.+.++.+...++|+.++|.+.+++.+..||+..|...++-..++.+..+.
T Consensus 128 ~iG~G-l~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~ 204 (498)
T COG3104 128 IVGTG-LFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLL 204 (498)
T ss_pred Hhccc-cccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 23322 23456667889988763 36678888888999999999999999999999999998888777777665554
No 186
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.11 E-value=8.9e-09 Score=78.67 Aligned_cols=163 Identities=13% Similarity=0.045 Sum_probs=115.9
Q ss_pred hHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCC
Q psy5074 13 SALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQ 91 (204)
Q Consensus 13 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (204)
.......|.+.+.++++..+ .........+..+.++..+++.+|+|+|+-++.+..++++++.+..-....
T Consensus 30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~-------- 101 (422)
T COG0738 30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASS-------- 101 (422)
T ss_pred hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh--------
Confidence 34456677877778898866 888999999999999999999999999999999999999998887643221
Q ss_pred CccHH-HHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHh-------------
Q psy5074 92 DYSWI-PIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT------------- 157 (204)
Q Consensus 92 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------- 157 (204)
..+. .+..+.+...+.+. .......+++.+.|++..+.-+.+.+.++.+|+.++|.+.+++...
T Consensus 102 -~~y~~FL~~lFila~Gi~~-LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~ 179 (422)
T COG0738 102 -KSYGFFLVALFILASGIGL-LETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILA 179 (422)
T ss_pred -hhHHHHHHHHHHHHhhhHH-HHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHH
Confidence 1222 22222222222222 2334457888999998888999999999999999999998887762
Q ss_pred ------hchhHHHHHHHHHHHHHHHHHhh-cccCC
Q psy5074 158 ------VGSAATYGLLGLICTLGAVFVYT-RVPET 185 (204)
Q Consensus 158 ------~g~~~~~~~~~~~~~i~~~~~~~-~~~e~ 185 (204)
..++.+|...+...++..+.... ..||.
T Consensus 180 ~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~ 214 (422)
T COG0738 180 IKGADASSVQFPYLILAGLLVLLAVLILLSKLPDL 214 (422)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcC
Confidence 13566666666665555444333 23543
No 187
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.11 E-value=3.9e-09 Score=84.66 Aligned_cols=141 Identities=11% Similarity=0.054 Sum_probs=85.0
Q ss_pred hHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCC
Q psy5074 13 SALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQ 91 (204)
Q Consensus 13 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (204)
+....+.+++.+....+.+. ........+..+++.++.++++||+|||+.+.++..+..++.+..........
T Consensus 248 ~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~------ 321 (473)
T PRK10429 248 NIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAP------ 321 (473)
T ss_pred HHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCc------
Confidence 33334444444433222223 44555566778899999999999999999998887766655544432211110
Q ss_pred CccHHHHHHHHHHHHHHHhcCccchhhhhccccc-------hhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhch
Q psy5074 92 DYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIP-------LEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS 160 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 160 (204)
...+..+....+.+.+.+. ..+..+++.+|..+ ++..|...+.......++..+++.+.+.+.+..|+
T Consensus 322 ~~~~~~~i~~~l~g~~~~~-~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 322 HNALLIVIAGILLNIGTAL-FWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1223333232333333333 23466778888855 23344567777888889999999999988876554
No 188
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.10 E-value=6.4e-10 Score=88.01 Aligned_cols=165 Identities=17% Similarity=0.071 Sum_probs=107.5
Q ss_pred HHHhHHHHHH-hhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhh----hcCchHHHH-HhhHHHHHHHHHHHHh-heeecC
Q psy5074 15 LIYYTVDIFR-NAGTRIAP-STASIIVGAVQVVVSLLSSLLID----RLGRRFLLL-TSEITMAFCQLLLVAY-FVFKNQ 86 (204)
Q Consensus 15 ~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~-~~~~~~~i~~~~~~~~-~~~~~~ 86 (204)
...|.+.++. ..|++... +....+..+...+..++.|.++| |+||||..+ ++....+++..++... ....+.
T Consensus 20 ~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~ 99 (428)
T PF13347_consen 20 LSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSF 99 (428)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhh
Confidence 3345444444 46888755 67777777788888889999999 799877555 5667777766665533 100000
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccc-hhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhh-------
Q psy5074 87 GYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIP-LEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV------- 158 (204)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------- 158 (204)
.....+..+...++...+... .....++.+|+.+ +++|.+..+.......+|..+...+.+.+.+..
T Consensus 100 ----~~~~~~~~~~~~l~~~~~t~~-~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~ 174 (428)
T PF13347_consen 100 ----TAKLVWLFVFYILFDIAYTFV-QIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSN 174 (428)
T ss_pred ----hhHHHHHHHHHHHHHHhhhhc-cCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccch
Confidence 001112233333444444443 3234578999987 578999999998888888876666666655432
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcccC
Q psy5074 159 GSAATYGLLGLICTLGAVFVYTRVPE 184 (204)
Q Consensus 159 g~~~~~~~~~~~~~i~~~~~~~~~~e 184 (204)
+|+....+.+++..+..+...+..||
T Consensus 175 ~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 175 GYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHHHHHHHhhhhhheeee
Confidence 47777777778877777777777788
No 189
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.10 E-value=3.5e-09 Score=82.23 Aligned_cols=143 Identities=15% Similarity=0.111 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcC
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGI 112 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (204)
+...+...+...+.-.+..++.+|+|.|+.++++..++++=....+.. +..+.....-.+.+.-+....
T Consensus 262 G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~-----------~~~~~i~~~klLH~~e~~l~l 330 (412)
T PF01306_consen 262 GYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA-----------TNPWVISLIKLLHALEFPLLL 330 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-------------SHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh-----------cchHHHHHHHHHHHHHHHHHH
Confidence 566677777788899999999999999999999999999988888766 344554444455555544433
Q ss_pred ccchhhhhccccchhhhHhHhHHH-HHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHHHHHHHhhcccCCCC
Q psy5074 113 GPIPWFMMAEIIPLEAKLWSSSLL-MCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTLGAVFVYTRVPETKN 187 (204)
Q Consensus 113 ~~~~~~~~~e~~p~~~R~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~ 187 (204)
. ...-|+++.+|+|..++...+. +....++..+.+.+.|.+.|+.|.+..|.+.+.+.+...++..+.++++|+
T Consensus 331 v-a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 331 V-AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp H-HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred H-HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 2 3457999999999999999886 566778899999999999999999888988888888877777776665543
No 190
>PRK10133 L-fucose transporter; Provisional
Probab=99.09 E-value=1.6e-08 Score=80.43 Aligned_cols=150 Identities=12% Similarity=0.052 Sum_probs=98.7
Q ss_pred hChhHHHHhHHHHH-Hh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecC
Q psy5074 10 SGVSALIYYTVDIF-RN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQ 86 (204)
Q Consensus 10 ~~~~~~~~~~~~~~-~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (204)
.+......|.+.++ ++ .|.+... ........++.+++.++.+++.||+|||+++..+..+..+........
T Consensus 272 ~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~------ 345 (438)
T PRK10133 272 GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA------ 345 (438)
T ss_pred HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc------
Confidence 33344455666563 43 6888766 778888888999999999999999999999888776665554443332
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc-hhHHHH
Q psy5074 87 GYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYG 165 (204)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~ 165 (204)
+.. .......+.+.+.+. ..|.......|.+|++ .+++.++.. ....++.++|.+.+.+.+..| .+..|.
T Consensus 346 -----~~~-~~~~~~~l~glg~~~-i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~ 416 (438)
T PRK10133 346 -----GGH-VGLIALTLCSAFMSI-QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAEL 416 (438)
T ss_pred -----CCh-HHHHHHHHHHHHHHH-HHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHH
Confidence 111 223333344444443 3456667778877764 566777765 355678889999999988887 666665
Q ss_pred HHHHHHHHH
Q psy5074 166 LLGLICTLG 174 (204)
Q Consensus 166 ~~~~~~~i~ 174 (204)
+.....+..
T Consensus 417 v~~~~~~~~ 425 (438)
T PRK10133 417 IPALCFAVI 425 (438)
T ss_pred HHHHHHHHH
Confidence 444443333
No 191
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.07 E-value=2.7e-08 Score=78.26 Aligned_cols=146 Identities=17% Similarity=0.143 Sum_probs=94.9
Q ss_pred HHHHHhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhh
Q psy5074 4 MTFQRFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYF 81 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~ 81 (204)
+.++.+.+.+.......++.+. +|.++.. ...........+++.++..++++|+|||+.+.++.++..++...+.+..
T Consensus 244 ~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~ 323 (467)
T COG2211 244 MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP 323 (467)
T ss_pred HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444455544444444444333 2333322 3444444555556689999999999999999999999999888887763
Q ss_pred eeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccc-------hhhhHhHhHHHHHHHHHHHHHHHHHhHHH
Q psy5074 82 VFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIP-------LEAKLWSSSLLMCYSWSCLFLVSKVFMDL 154 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~R~~~~~~~~~~~~~~~~~~~~~~~~l 154 (204)
. +...+.++..++...+.+. ..+++|++++|... .+.-|...+......-++..++..+.++.
T Consensus 324 ~---------~~~~l~~~~~~i~~~g~~~-~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~ 393 (467)
T COG2211 324 A---------GSVVLIVVALIIAGVGTGI-ANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWI 393 (467)
T ss_pred C---------cchHHHHHHHHHHHHHhhc-cccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2334444444555555554 46789999998753 23334556666777788888888888888
Q ss_pred HHhhc
Q psy5074 155 IDTVG 159 (204)
Q Consensus 155 ~~~~g 159 (204)
.+..|
T Consensus 394 L~~~G 398 (467)
T COG2211 394 LGAIG 398 (467)
T ss_pred HHHcC
Confidence 87654
No 192
>PRK11462 putative transporter; Provisional
Probab=99.06 E-value=3.1e-08 Score=79.21 Aligned_cols=166 Identities=12% Similarity=0.133 Sum_probs=102.0
Q ss_pred HHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhh----cCchHHH-HHhhHHHHHHHHHHHHhheeecC
Q psy5074 14 ALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDR----LGRRFLL-LTSEITMAFCQLLLVAYFVFKNQ 86 (204)
Q Consensus 14 ~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~-~~~~~~~~i~~~~~~~~~~~~~~ 86 (204)
.+..|+..++.+ .|++... +.+..+.-+...+.-++.|.++|| +||||.. +++.+..++...++........
T Consensus 27 ~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~- 105 (460)
T PRK11462 27 NVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSM- 105 (460)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCc-
Confidence 344555555544 6888655 777777778888999999999996 6877655 4566677766655443321100
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccc-hhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhh-------
Q psy5074 87 GYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIP-LEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV------- 158 (204)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------- 158 (204)
........+...++..++.... ....++.+|+.+ +++|++..++....+.+|..+++.+...+.+..
T Consensus 106 ----~~~~~y~~~~~~~~~~~~t~~~-ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~ 180 (460)
T PRK11462 106 ----NGKMIYAAITYTLLTLLYTVVN-IPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPL 180 (460)
T ss_pred ----chHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence 0111222333333444444332 234578888876 799999999999988888777776655444433
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcccCC
Q psy5074 159 GSAATYGLLGLICTLGAVFVYTRVPET 185 (204)
Q Consensus 159 g~~~~~~~~~~~~~i~~~~~~~~~~e~ 185 (204)
+|+....+++++..++....+...||.
T Consensus 181 g~~~~~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 181 GFQGGIAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcceec
Confidence 455555566666555555555445554
No 193
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.05 E-value=2.7e-09 Score=82.31 Aligned_cols=131 Identities=13% Similarity=-0.002 Sum_probs=82.6
Q ss_pred hhChhHHHHhHHHHHHhhCCCCCh-hHHHHH-HHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheee-c
Q psy5074 9 FSGVSALIYYTVDIFRNAGTRIAP-STASII-VGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFK-N 85 (204)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~-~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~-~ 85 (204)
..+.+....+.|.++++.|.+.++ ...... ..+..+++.++++++.||+|||+.+..+.++..+............ +
T Consensus 222 ~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 301 (356)
T TIGR00901 222 KLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHH 301 (356)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 344455667788888888887655 444443 3456789999999999999999998888877776655444331110 0
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHH
Q psy5074 86 QGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSW 141 (204)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~ 141 (204)
.+. .....+.......+...+.+. ..+...++.+|.+|+++|++..++.+...+
T Consensus 302 ~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 302 DGI-TFPHLLMLFLTITLEAVTGGL-GTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred ccc-ccchHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 000 001112222222233333333 345667899999999999999999877543
No 194
>KOG0253|consensus
Probab=99.05 E-value=6.8e-09 Score=78.64 Aligned_cols=145 Identities=12% Similarity=-0.044 Sum_probs=104.9
Q ss_pred hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHH
Q psy5074 26 AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTI 104 (204)
Q Consensus 26 ~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (204)
.|.+..+ ..++.....+..+++..+|..+|++|||+..........+...+-.... +-....++.++.
T Consensus 108 w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~sp-----------nf~~L~~f~~l~ 176 (528)
T KOG0253|consen 108 WGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASP-----------NFASLCVFRALW 176 (528)
T ss_pred hchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCC-----------CeehhhHHHHHH
Confidence 4555444 6778888888999999999999999999999888877777776655442 222333334443
Q ss_pred HHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHHHHHHHhhcccC
Q psy5074 105 VAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTLGAVFVYTRVPE 184 (204)
Q Consensus 105 ~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e 184 (204)
+++. +-.|...++-.|..|...|..-+-+. .....|..+...+....+...|||+..........+.+. .+++.||
T Consensus 177 ~~g~--gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~-f~~w~~E 252 (528)
T KOG0253|consen 177 GFGV--GGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAAR-FLVWVYE 252 (528)
T ss_pred hccC--CCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHH-HHhhccc
Confidence 3333 33566667888999999999877766 777788888888888888889999877666655544444 4455888
Q ss_pred C
Q psy5074 185 T 185 (204)
Q Consensus 185 ~ 185 (204)
+
T Consensus 253 S 253 (528)
T KOG0253|consen 253 S 253 (528)
T ss_pred C
Confidence 6
No 195
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.04 E-value=3.6e-08 Score=77.30 Aligned_cols=152 Identities=11% Similarity=-0.034 Sum_probs=96.9
Q ss_pred HHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCC
Q psy5074 15 LIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQD 92 (204)
Q Consensus 15 ~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (204)
..+..|.+.++ +|.+..+ +.......++.+++++..+++.||.++|+.+..+. ...+........ +
T Consensus 224 ~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~-----------~ 291 (393)
T PRK11195 224 LRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQ-----------H 291 (393)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHH-----------h
Confidence 33444555544 6777766 77788888899999999999999999988777664 333332222222 1
Q ss_pred ccHHHHHHHHHHHHHHHhcCccchhhhhccccchhh-hHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHH
Q psy5074 93 YSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEA-KLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLIC 171 (204)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~-R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 171 (204)
..+.......+.+.+.+.... ...+...|..|++. |+++.++.+...+++..++..+.+.+ +..|-+..+.+.+...
T Consensus 292 ~~~~~~~~~~~~G~~~g~~~~-~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 369 (393)
T PRK11195 292 SLLPAYPLLILIGALGGFFVV-PMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGL 369 (393)
T ss_pred HHHHHHHHHHHHHHhhhhhhh-hHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHH
Confidence 222222333333333333232 33456677766654 79999999999999999999888854 6677766666655555
Q ss_pred HHHHHHHhh
Q psy5074 172 TLGAVFVYT 180 (204)
Q Consensus 172 ~i~~~~~~~ 180 (204)
++.+...+.
T Consensus 370 ~~~~~~~~~ 378 (393)
T PRK11195 370 LVALAMALL 378 (393)
T ss_pred HHHHHHHHH
Confidence 555544443
No 196
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=99.03 E-value=7.7e-08 Score=72.85 Aligned_cols=159 Identities=16% Similarity=0.078 Sum_probs=93.2
Q ss_pred hHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHH
Q psy5074 18 YTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWI 96 (204)
Q Consensus 18 ~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 96 (204)
|.=.+.++.|++.++ ............+...+.|.++||+|||+.-+..+++..+.++.... +..+.
T Consensus 56 Y~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~------------~~~~~ 123 (354)
T PF05631_consen 56 YLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS------------SNYPV 123 (354)
T ss_pred hhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc------------cccHH
Confidence 333445667888776 67777777788888889999999999999988888888777754321 12233
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhccc----cchhhhHhHhHHHH-HHHHHHHHHHHHHhHHHHHhhc--hhHHHHHHHH
Q psy5074 97 PIFSVCTIVAIFRIGIGPIPWFMMAEI----IPLEAKLWSSSLLM-CYSWSCLFLVSKVFMDLIDTVG--SAATYGLLGL 169 (204)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~e~----~p~~~R~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~g--~~~~~~~~~~ 169 (204)
.+....+.+.....-...--.-++.|. +|++..+...+... ..+.+.++.+..+...+.+..+ ...+|.....
T Consensus 124 L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~ 203 (354)
T PF05631_consen 124 LLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIV 203 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHH
Confidence 333333333332222221111244443 45555555555444 2233344555555556666554 3567777766
Q ss_pred HHHHHHHHHhhcccCCCCC
Q psy5074 170 ICTLGAVFVYTRVPETKNK 188 (204)
Q Consensus 170 ~~~i~~~~~~~~~~e~~~~ 188 (204)
+..++.++....-+|+.+.
T Consensus 204 ~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 204 LLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHHHhcccccCCC
Confidence 6666666665545676543
No 197
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.03 E-value=5e-08 Score=77.33 Aligned_cols=147 Identities=18% Similarity=0.152 Sum_probs=105.2
Q ss_pred HHHHHhhChhHHHHhHHHHHHh-hCCCCChhHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhe
Q psy5074 4 MTFQRFSGVSALIYYTVDIFRN-AGTRIAPSTASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFV 82 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~ 82 (204)
..+.+..+........+++.++ .|.+...........+..+++.++.++++||+|||+.+..+..+..++.+.+.+...
T Consensus 233 ~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~ 312 (428)
T PF13347_consen 233 AFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP 312 (428)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh
Confidence 3444555555556666677666 444432366777888889999999999999999999999999999988888776631
Q ss_pred eecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccch-------hhhHhHhHHHHHHHHHHHHHHHHHhHHHH
Q psy5074 83 FKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPL-------EAKLWSSSLLMCYSWSCLFLVSKVFMDLI 155 (204)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~R~~~~~~~~~~~~~~~~~~~~~~~~l~ 155 (204)
.+.+.......+.+.+.+. .....+++.+|..+. +..|...++.+....++..+++.+.+.+.
T Consensus 313 ---------~~~~~~~i~~~l~gi~~~~-~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l 382 (428)
T PF13347_consen 313 ---------GSPWLVLILFILAGIGYGA-FFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL 382 (428)
T ss_pred ---------hhHHHHHHHHHHhHhhhcc-cccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 1334444444455555444 346778889998864 33577888888888999999999888887
Q ss_pred Hhhch
Q psy5074 156 DTVGS 160 (204)
Q Consensus 156 ~~~g~ 160 (204)
+..|+
T Consensus 383 ~~~Gy 387 (428)
T PF13347_consen 383 ALVGY 387 (428)
T ss_pred HHhCc
Confidence 76543
No 198
>PRK11462 putative transporter; Provisional
Probab=99.03 E-value=4.6e-08 Score=78.22 Aligned_cols=118 Identities=14% Similarity=0.067 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcC
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGI 112 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (204)
........+..+++.+++++++||+|||+.+..+.....+......+... ...........+.+.+.+ ..
T Consensus 266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~g~~~~-~~ 335 (460)
T PRK11462 266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPM---------QASITMFVFIFVIGVLHQ-LV 335 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhch---------hHHHHHHHHHHHHHHHHH-HH
Confidence 44556667778889999999999999999876555444433333322210 111122222222222222 23
Q ss_pred ccchhhhhccccc-----hhhhHhHh--HHHHHHHHHHHHHHHHHhHHHHHhhch
Q psy5074 113 GPIPWFMMAEIIP-----LEAKLWSS--SLLMCYSWSCLFLVSKVFMDLIDTVGS 160 (204)
Q Consensus 113 ~~~~~~~~~e~~p-----~~~R~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~g~ 160 (204)
.+..+.+.+|..+ +.+|..+. +.......++..+++.+.+.+.+..|+
T Consensus 336 ~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 336 TPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3455677777655 22444444 555577888988998888887765443
No 199
>KOG2532|consensus
Probab=99.02 E-value=5.2e-09 Score=83.20 Aligned_cols=167 Identities=12% Similarity=0.076 Sum_probs=116.1
Q ss_pred HHHHHHhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCch---------HHHHHhhHHHH
Q psy5074 3 LMTFQRFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRR---------FLLLTSEITMA 71 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr---------~~~~~~~~~~~ 71 (204)
+..++...+.+.+..|+|.++++ +|++..+ ++.+.+..+...+..+++|.++||..+| ..-.++..+.+
T Consensus 265 ~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~a 344 (466)
T KOG2532|consen 265 ISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPA 344 (466)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHH
Confidence 45677777888999999999998 7999876 8999999999999999999999997652 22234444444
Q ss_pred HHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhcccc-chhhhHhHhHHHHHHHHHHHHHHHHH
Q psy5074 72 FCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEII-PLEAKLWSSSLLMCYSWSCLFLVSKV 150 (204)
Q Consensus 72 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~~~~~~~~~ 150 (204)
++.+.+.+... ...+..+..+.+.....+.... . .+.+-.- .++.-+..+++.+....+.++++|.+
T Consensus 345 i~l~~l~~~~~---------~~~~~a~~~l~~~~~~~g~~~~--G-f~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~ 412 (466)
T KOG2532|consen 345 VFLLVLAFTSD---------EHRLLAVILLTIAIGLSGFNIS--G-FYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLL 412 (466)
T ss_pred HHHHeeeecCC---------CcchHHHHHHHHHHHHcccchh--h-hHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 54444444321 1233334433333333332221 1 2223333 56678999999999999999999999
Q ss_pred hHHHHH---hhchhHHHHHHHHHHHHHHHHHhhc
Q psy5074 151 FMDLID---TVGSAATYGLLGLICTLGAVFVYTR 181 (204)
Q Consensus 151 ~~~l~~---~~g~~~~~~~~~~~~~i~~~~~~~~ 181 (204)
.+.+.. ...|+..|.+.+++.++..+...++
T Consensus 413 vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 413 VGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 998873 3479999999988888887655544
No 200
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.02 E-value=1.6e-08 Score=89.20 Aligned_cols=161 Identities=8% Similarity=-0.058 Sum_probs=102.4
Q ss_pred hHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCC-
Q psy5074 13 SALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYD- 89 (204)
Q Consensus 13 ~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~- 89 (204)
..+..+.|.++++ +|.+... +.+.....++.+++.++.|+++||.++++.+..+.++.+++.+.+............
T Consensus 242 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (1140)
T PRK06814 242 AVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQ 321 (1140)
T ss_pred HHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccccc
Confidence 4556678888776 6777665 778888889999999999999998887776665555555544433321000000000
Q ss_pred --------CCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH-hhch
Q psy5074 90 --------MQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID-TVGS 160 (204)
Q Consensus 90 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~ 160 (204)
.....+...+...+.+.+.+. ..+...+++.+..|++.||++.|+.+....++..+++.+.+.+.+ ..+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~ 400 (1140)
T PRK06814 322 LKSILVFLSKRHGWRILIDLFGLAAAGGL-YIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSI 400 (1140)
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHHHH-hHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence 001233333333333333333 233456889999999999999999999999999999999888864 3445
Q ss_pred hHHHHHHHHHHHHH
Q psy5074 161 AATYGLLGLICTLG 174 (204)
Q Consensus 161 ~~~~~~~~~~~~i~ 174 (204)
...+.+.+...++.
T Consensus 401 ~~~~~~~~~~~~~~ 414 (1140)
T PRK06814 401 PWIILFIALANLIV 414 (1140)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444433333
No 201
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.01 E-value=2.8e-08 Score=75.06 Aligned_cols=164 Identities=16% Similarity=0.010 Sum_probs=112.7
Q ss_pred HHHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhc-CchHHHHHhhHHHHHHHHHHHHhh
Q psy5074 4 MTFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRL-GRRFLLLTSEITMAFCQLLLVAYF 81 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~i~~~~~~~~~ 81 (204)
.+-.|...+|.+..|+|.++.|.|++..+ +.......+.+.+.++....+.+|. .+|+........+.++...+.+..
T Consensus 216 fmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P 295 (395)
T COG2807 216 FMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAP 295 (395)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence 44556667788999999999999999876 8888899999999999999999964 567776666666666666665442
Q ss_pred eeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhcccc-chhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc-
Q psy5074 82 VFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEII-PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG- 159 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g- 159 (204)
......- ..+.+.+.+. ..|+....+.+-. .+++-+.-.++.+..+++-+.++|.+.|++.|..|
T Consensus 296 ----------~~~~~lw--~~llG~G~G~-~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gs 362 (395)
T COG2807 296 ----------GQLPILW--ALLLGLGQGG-AFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGS 362 (395)
T ss_pred ----------hhHHHHH--HHHHhCccch-HHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCC
Confidence 1111111 1222222222 2234444444443 45666778888999999999999999999999876
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q psy5074 160 SAATYGLLGLICTLGAVFVYT 180 (204)
Q Consensus 160 ~~~~~~~~~~~~~i~~~~~~~ 180 (204)
|+..........++..+..+.
T Consensus 363 w~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 363 WSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 666665555555555554444
No 202
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.99 E-value=8.6e-09 Score=78.99 Aligned_cols=135 Identities=22% Similarity=0.174 Sum_probs=95.4
Q ss_pred HHHHhhChhHHHHhHHHH-HHhhCCC-CCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhh
Q psy5074 5 TFQRFSGVSALIYYTVDI-FRNAGTR-IAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYF 81 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~ 81 (204)
.+...........+.|.+ .++.|.+ ... .....+..+...++.++.++++||+++|+..........+.........
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (352)
T PF07690_consen 215 FFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLP 294 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSH
T ss_pred hhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556677888887 5567888 334 6667888888888999999999999998887777766666665554332
Q ss_pred eeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHH
Q psy5074 82 VFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVS 148 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~ 148 (204)
.. ...........+.+.+.+. ..+....+..|..|+++|+++.++.+...++++.++|
T Consensus 295 ~~--------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 295 FS--------SSPVWLIIALFLIGFGFGI-VFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HH--------CHHHHHHHHHHHHHHHHHH-HCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--------hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 11 1122333333344444443 3556778999999999999999999999999998886
No 203
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.98 E-value=8.9e-08 Score=75.49 Aligned_cols=138 Identities=12% Similarity=0.066 Sum_probs=91.6
Q ss_pred HHHHhHHHHHHhhCCCCCh---hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCC
Q psy5074 14 ALIYYTVDIFRNAGTRIAP---STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDM 90 (204)
Q Consensus 14 ~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (204)
....|.+.+.++.+.+.+. ............+|.++++++.||+++|+++.++.....++.++....
T Consensus 250 ~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~---------- 319 (410)
T TIGR00885 250 MCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA---------- 319 (410)
T ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc----------
Confidence 4456677777665433322 334444556778999999999999999999888887777776666553
Q ss_pred CCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhh------chhHHH
Q psy5074 91 QDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV------GSAATY 164 (204)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------g~~~~~ 164 (204)
............+.+.+..+ |..+....+..+++.+..+.++.... +|+.+.|.+.+.+.|.. +.+..|
T Consensus 320 --~~~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~ 394 (410)
T TIGR00885 320 --GGHVGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSF 394 (410)
T ss_pred --CChHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHH
Confidence 11222333334444444444 67778888888877665555555443 89999999999999954 355555
Q ss_pred HH
Q psy5074 165 GL 166 (204)
Q Consensus 165 ~~ 166 (204)
++
T Consensus 395 ~~ 396 (410)
T TIGR00885 395 IL 396 (410)
T ss_pred HH
Confidence 54
No 204
>KOG2816|consensus
Probab=98.96 E-value=3.9e-08 Score=78.06 Aligned_cols=134 Identities=20% Similarity=0.165 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhh
Q psy5074 39 VGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWF 118 (204)
Q Consensus 39 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (204)
..+..++.++..|.++||+|||..+......+.+....+.+. . |+......+.+ ++.. ......+
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~------------~-~~~~~~~~l~g-~~~~-~~s~~~a 135 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ------------G-YWFFLLLGLSG-GFSA-IFSVGFA 135 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH------------H-HHHhhhccccc-chhh-hhhhhhh
Confidence 356778889999999999999999998888887777666654 1 23222111211 2222 2234568
Q ss_pred hhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHHHHHHHhhcccCCCC
Q psy5074 119 MMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTLGAVFVYTRVPETKN 187 (204)
Q Consensus 119 ~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~ 187 (204)
++++...+++|....++.+.....+..++|...+.+....|....+.+..+..++..+...+.+||+..
T Consensus 136 ~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~ 204 (463)
T KOG2816|consen 136 YVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQ 204 (463)
T ss_pred heeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccC
Confidence 999999999999999999999999999999999999999888888888888888888888888999754
No 205
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.92 E-value=3.9e-08 Score=77.07 Aligned_cols=76 Identities=21% Similarity=0.238 Sum_probs=59.8
Q ss_pred HHHHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCc-hHHHHHhhHHHHHHHHHHH
Q psy5074 3 LMTFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGR-RFLLLTSEITMAFCQLLLV 78 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~i~~~~~~ 78 (204)
...+.++........|.|.++++.|++..+ +.......+..+++++++|.++||.++ |+.+.+..++.++......
T Consensus 9 ~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~ 86 (400)
T PF03825_consen 9 LMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 456777777788889999999999999877 888999999999999999999999864 5555555555555444433
No 206
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.86 E-value=2.3e-08 Score=77.25 Aligned_cols=128 Identities=17% Similarity=0.104 Sum_probs=82.1
Q ss_pred HHhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheee
Q psy5074 7 QRFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFK 84 (204)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~ 84 (204)
......+.+..+.|.++++ .|.+..+ ........+..+++.++.|+++||+|||+.+..+......+..........+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (366)
T TIGR00886 236 VTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSP 315 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCc
Confidence 3333445566778888765 6887765 6677778888899999999999999999887776665555544444321100
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHH
Q psy5074 85 NQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSC 143 (204)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~ 143 (204)
...+.............+.+. +..+...+|..| ++|+++.|+.+..+++|
T Consensus 316 -------~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 316 -------LSLAVFIVLFVALFFFSGAGN-GSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred -------chHHHHHHHHHHHHHHhcccc-chhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 012222222333333444433 345677888887 58999999988876654
No 207
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.82 E-value=3.9e-07 Score=69.01 Aligned_cols=153 Identities=11% Similarity=0.003 Sum_probs=115.3
Q ss_pred hHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCC
Q psy5074 13 SALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQ 91 (204)
Q Consensus 13 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (204)
.++...++++-+++|++.+. +..+.+.-+...+.+++..++..|+|.++.+..+.+...++..+=...
T Consensus 29 tsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~----------- 97 (395)
T COG2807 29 TSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG----------- 97 (395)
T ss_pred hhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-----------
Confidence 34556677888889999876 899999999999999999999999999999888877777766542221
Q ss_pred CccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhh-chhHHHHHHHHH
Q psy5074 92 DYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV-GSAATYGLLGLI 170 (204)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~~~~~~ 170 (204)
..+..+....+.+.+.+.+ +......+.|-||++ -+..++++...-.+++..++.+...+.++. +|+....+.+.+
T Consensus 98 -~~~~L~~gt~l~G~gIav~-nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~ 174 (395)
T COG2807 98 -GLPLLFLGTLLAGAGIAVI-NVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALL 174 (395)
T ss_pred -cHHHHHHHHHHHHhhHHHH-HHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHH
Confidence 2233333333444444433 334557888999876 788899999888999999998888888777 799998888888
Q ss_pred HHHHHHHHh
Q psy5074 171 CTLGAVFVY 179 (204)
Q Consensus 171 ~~i~~~~~~ 179 (204)
+++.++..+
T Consensus 175 allAl~~Wl 183 (395)
T COG2807 175 ALLALLIWL 183 (395)
T ss_pred HHHHHHHHh
Confidence 887766544
No 208
>PRK09848 glucuronide transporter; Provisional
Probab=98.80 E-value=7.1e-07 Score=71.17 Aligned_cols=121 Identities=7% Similarity=0.031 Sum_probs=67.2
Q ss_pred HHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhc----CchHHH-HHhhHHHHHHHHHHHHhheeecCC
Q psy5074 15 LIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRL----GRRFLL-LTSEITMAFCQLLLVAYFVFKNQG 87 (204)
Q Consensus 15 ~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~----grr~~~-~~~~~~~~i~~~~~~~~~~~~~~~ 87 (204)
...|.+.++++ .|++... +....+..+...+..++.|+++||. ||||.+ ..+.+...+....+........
T Consensus 27 ~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 104 (448)
T PRK09848 27 GALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWS-- 104 (448)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCC--
Confidence 33444445555 6888766 7888888999999999999999996 777755 5555555554444322210000
Q ss_pred CCCCCcc-HHHHHHHHHHHHHHHhcCccchhhhhcccc-chhhhHhHhHHHHHHHH
Q psy5074 88 YDMQDYS-WIPIFSVCTIVAIFRIGIGPIPWFMMAEII-PLEAKLWSSSLLMCYSW 141 (204)
Q Consensus 88 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~ 141 (204)
.... +.......+...+++.... ...+...|+. ++++|.+..+.-.....
T Consensus 105 ---~~~~~~~~~~~~~~~~~~~~~~~~-~~~al~~~~~~~~~~r~~~~~~r~~~~~ 156 (448)
T PRK09848 105 ---HSSKVVYAYLTYMGLGLCYSLVNI-PYGSLATAMTQQPQSRARLGAARGIAAS 156 (448)
T ss_pred ---cchHHHHHHHHHHHHHHHHHHhcc-cHhhhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 0111 1122222333444443322 2334455544 45678877666554433
No 209
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.80 E-value=3.8e-07 Score=69.98 Aligned_cols=148 Identities=14% Similarity=0.092 Sum_probs=105.6
Q ss_pred hHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCC
Q psy5074 13 SALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDM 90 (204)
Q Consensus 13 ~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (204)
.+...|++.++.+ .|.+..+ ....+....+.++|.+++.++..|+...|.+.....+..+.++.....
T Consensus 253 va~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~---------- 322 (422)
T COG0738 253 VAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI---------- 322 (422)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 4567888888888 6777665 778888889999999999999999999998887776666666665555
Q ss_pred CCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHH
Q psy5074 91 QDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLI 170 (204)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~ 170 (204)
.....+....+.+.+.+. ..|...+...+..|+ .....|..-.+..+|+.+.|++.|++.|..|....+.....+
T Consensus 323 --~g~v~~~~l~~ig~F~si-mfPTIfslal~~l~~--~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pll 397 (422)
T COG0738 323 --GGVVALYALFLIGLFNSI-MFPTIFSLALKNLGE--HTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLL 397 (422)
T ss_pred --cChHHHHHHHHHHHHhHH-HHHHHHHHHHhccCc--cccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 223334444444445444 456777888888883 333444445566789999999999999999887666544444
Q ss_pred HHHHH
Q psy5074 171 CTLGA 175 (204)
Q Consensus 171 ~~i~~ 175 (204)
+.+..
T Consensus 398 c~lyV 402 (422)
T COG0738 398 CYLYV 402 (422)
T ss_pred HHHHH
Confidence 44443
No 210
>KOG2533|consensus
Probab=98.80 E-value=4.6e-08 Score=78.22 Aligned_cols=152 Identities=14% Similarity=-0.002 Sum_probs=87.7
Q ss_pred HHHHHHhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhh----cCchHHHHHhhHHHHHHHHH
Q psy5074 3 LMTFQRFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDR----LGRRFLLLTSEITMAFCQLL 76 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~~~~~~~~~i~~~~ 76 (204)
+..++.....+.+.+|+|.++++ .|++..+ ..+++...++++++.+++|+++|| ..+|........+..+....
T Consensus 280 l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~ 359 (495)
T KOG2533|consen 280 LCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAI 359 (495)
T ss_pred HHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44556666668899999999998 4577655 889999999999999999999999 56666655555444444322
Q ss_pred HHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccch-hhhHhHhHHHHHHHHHHHHHHHHHhHHHH
Q psy5074 77 LVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPL-EAKLWSSSLLMCYSWSCLFLVSKVFMDLI 155 (204)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~R~~~~~~~~~~~~~~~~~~~~~~~~l~ 155 (204)
...... ................. ...+......++.... .+|.+..+........++.+.+.+.....
T Consensus 360 ~l~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ 428 (495)
T KOG2533|consen 360 SLLAAA----------VLPGAYGAFLIGPYGLI-ATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLD 428 (495)
T ss_pred HHHhhc----------cchHHhHHHHhcchhhH-HHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhccccc
Confidence 222211 11111111111111111 1123344455555444 44555555555555666666666554433
Q ss_pred H-hhchhHHHH
Q psy5074 156 D-TVGSAATYG 165 (204)
Q Consensus 156 ~-~~g~~~~~~ 165 (204)
. .++|...|.
T Consensus 429 ap~y~~~~~f~ 439 (495)
T KOG2533|consen 429 APRYGWGAVFY 439 (495)
T ss_pred CcchhhhhHHH
Confidence 3 356766663
No 211
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.79 E-value=1.3e-07 Score=75.85 Aligned_cols=133 Identities=9% Similarity=0.005 Sum_probs=94.5
Q ss_pred hhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHH
Q psy5074 25 NAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCT 103 (204)
Q Consensus 25 ~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (204)
..|.+++. +.......++.+++....+++.+|++.|+.+.++.++..++...........+... ..+..+.......+
T Consensus 282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~-gi~~~~~~~~~~~l 360 (468)
T TIGR00788 282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAF-GISDEVFVLGDSII 360 (468)
T ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeecccccc-CCCCeeeeeehhHH
Confidence 46777766 77777788999999999999999999999999888888877655432211111000 00112222222334
Q ss_pred HHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc
Q psy5074 104 IVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG 159 (204)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 159 (204)
.....+....+. ..++++..|++.+++..++.+...+++..+++.+.+.+.+..|
T Consensus 361 ~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 361 AEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444445555544 5889999999999999999999999999999999999988877
No 212
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.77 E-value=6.2e-07 Score=70.79 Aligned_cols=167 Identities=19% Similarity=0.199 Sum_probs=110.7
Q ss_pred hHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhh----cCchH-HHHHhhHHHHHHHHHHHHhheeec
Q psy5074 13 SALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDR----LGRRF-LLLTSEITMAFCQLLLVAYFVFKN 85 (204)
Q Consensus 13 ~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~----~grr~-~~~~~~~~~~i~~~~~~~~~~~~~ 85 (204)
.....|+..+..+ .|++... +.+..+.-+...+.-++.|.++|| +|||| .++.+.+..++...++........
T Consensus 29 ~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~ 108 (467)
T COG2211 29 GIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSM 108 (467)
T ss_pred HHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCccc
Confidence 4456667766665 6887654 666666677778899999999996 67665 555666777777776665533211
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhcccc-chhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHh-------
Q psy5074 86 QGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEII-PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT------- 157 (204)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~------- 157 (204)
........+...+...++..... -..++.+|+. .+++|.+..++-+....+|..+...+.+.+.+.
T Consensus 109 -----~~k~~ya~vtY~l~~l~YT~vni-Py~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~ 182 (467)
T COG2211 109 -----TGKLIYALVTYMLLGLGYTLVNI-PYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKA 182 (467)
T ss_pred -----CcchHHHHHHHHHHHHHHHheeC-chhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 12233344445555566655333 2346777776 458899999999999999988888887777654
Q ss_pred hchhHHHHHHHHHHHHHHHHHhhcccCC
Q psy5074 158 VGSAATYGLLGLICTLGAVFVYTRVPET 185 (204)
Q Consensus 158 ~g~~~~~~~~~~~~~i~~~~~~~~~~e~ 185 (204)
.||+....+++++..+..+.+++-.+|.
T Consensus 183 ~g~~~~~~~~~vi~~i~~l~~~~~v~ER 210 (467)
T COG2211 183 LGYQGTALVLGVIGVILLLFCFFNVKER 210 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3555555666666666766676656664
No 213
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.76 E-value=7.5e-07 Score=71.37 Aligned_cols=143 Identities=13% Similarity=0.112 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHh-hHHHHHHHHHHHHhheeecCCCCCCCccH-HHHHHHHHHHHHHHhc
Q psy5074 34 TASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTS-EITMAFCQLLLVAYFVFKNQGYDMQDYSW-IPIFSVCTIVAIFRIG 111 (204)
Q Consensus 34 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 111 (204)
....+..+...+..++.|-++|+-++||.++.. ..+..++...+.+.. +..+ ...++..+...+++.+
T Consensus 74 ~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~----------~~~~~~~~~l~iia~v~~~~~ 143 (477)
T PF11700_consen 74 YANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVS----------PGQWWLALVLFIIANVGYEAS 143 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhC----------cchHHHHHHHHHHHHHHHHHH
Confidence 456667777788889999999998877766544 444445555555441 2333 3333334444444443
Q ss_pred Cccchhhhhccccchhhh--------------------------HhHhHHHHHHHHHHHHHHHHHhHHHHHh--------
Q psy5074 112 IGPIPWFMMAEIIPLEAK--------------------------LWSSSLLMCYSWSCLFLVSKVFMDLIDT-------- 157 (204)
Q Consensus 112 ~~~~~~~~~~e~~p~~~R--------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------- 157 (204)
.....++.+|+.+++.+ ++..+.....+++|+.+.-.+.-.+...
T Consensus 144 -~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~ 222 (477)
T PF11700_consen 144 -NVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNT 222 (477)
T ss_pred -HHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 23556889999988888 8999999999999888766655444322
Q ss_pred hchhHHHHHHHHHHHHHHHHHhhcccCCCC
Q psy5074 158 VGSAATYGLLGLICTLGAVFVYTRVPETKN 187 (204)
Q Consensus 158 ~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~ 187 (204)
.+.|..+.+.++.-++..+..+++.||.++
T Consensus 223 ~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 223 WAIRVAFLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 224667777777777777777777887654
No 214
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.74 E-value=2.7e-06 Score=70.60 Aligned_cols=160 Identities=11% Similarity=0.059 Sum_probs=101.9
Q ss_pred HhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhh-cCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCcc
Q psy5074 17 YYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDR-LGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYS 94 (204)
Q Consensus 17 ~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 94 (204)
.+..++.+.+|.+.+. ...........-+..+++|+++|+ +||++.+.++.++..++..++.........+ ....
T Consensus 9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~---~~~~ 85 (654)
T TIGR00926 9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGH---PLHD 85 (654)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccccc---chHH
Confidence 3444445557777654 444444444556778888999996 7999999999888888877766532111100 0011
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhhccccchh---hhHhHhHHHHHHHHHHHHHHHHHhHHHHHhh-------chhHHH
Q psy5074 95 WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLE---AKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV-------GSAATY 164 (204)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------g~~~~~ 164 (204)
...+..+.+...+.+ +.-|...+...|.++++ .|.....+.+...++|+.+++.+.+++.+.. +|...|
T Consensus 86 ~~~l~gLaLia~G~G-giKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF 164 (654)
T TIGR00926 86 LLDLLGLALIALGTG-GIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAF 164 (654)
T ss_pred HHHHHHHHHHHhhcc-ccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHH
Confidence 112222333323322 23345556777777643 4778889999999999999999999987553 587888
Q ss_pred HHHHHHHHHHHHHHhh
Q psy5074 165 GLLGLICTLGAVFVYT 180 (204)
Q Consensus 165 ~~~~~~~~i~~~~~~~ 180 (204)
.+.++..+++.+....
T Consensus 165 ~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 165 GVPAILMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8877777777665443
No 215
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.73 E-value=3.3e-07 Score=72.73 Aligned_cols=156 Identities=13% Similarity=0.049 Sum_probs=100.2
Q ss_pred HHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhc-----CchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCC
Q psy5074 19 TVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRL-----GRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQD 92 (204)
Q Consensus 19 ~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (204)
.|.+.+++|++..+ ........+. -...++.|.++|-+ +||+.++++.++..+....++.......
T Consensus 13 ~~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~------- 84 (433)
T PF03092_consen 13 YPFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASES------- 84 (433)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccc-------
Confidence 44555668888765 4333333332 35677889999975 4666667777777665665555432111
Q ss_pred ccHHHHHHHHHHHHHHHhcCccchhhhhcccc---chhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHH
Q psy5074 93 YSWIPIFSVCTIVAIFRIGIGPIPWFMMAEII---PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGL 169 (204)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~ 169 (204)
+.........+...+... ...+..+...|.. |.+ |+...+.......+|+.++..+.+.+.+..+++..|.+.+.
T Consensus 85 s~~~~~~~l~la~~g~a~-~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~ 162 (433)
T PF03092_consen 85 SAAIAVVLLFLASFGYAF-ADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAA 162 (433)
T ss_pred hhhhHHHHHHHHHHHHHH-HHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHH
Confidence 112222222222333332 2335556777765 444 88888898999999999999999999999998888888877
Q ss_pred HHHHHHHHHhhcccC
Q psy5074 170 ICTLGAVFVYTRVPE 184 (204)
Q Consensus 170 ~~~i~~~~~~~~~~e 184 (204)
+..+..+..++..+|
T Consensus 163 ~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 163 LPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHhhhh
Confidence 777776666665665
No 216
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.72 E-value=2.1e-06 Score=68.66 Aligned_cols=185 Identities=14% Similarity=0.080 Sum_probs=119.7
Q ss_pred hHHHHHHhhChhHHHHhHHHHHHh--hCCCCC-h----------hHHHHHHHHHHHHHHHHHHHhhhhcCc-hHHHHHhh
Q psy5074 2 GLMTFQRFSGVSALIYYTVDIFRN--AGTRIA-P----------STASIIVGAVQVVVSLLSSLLIDRLGR-RFLLLTSE 67 (204)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~-~----------~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~ 67 (204)
++..+..+.+...+..|.+.+..+ ++-+++ . .+.....++...+.+++..++.+|+|+ |+...++.
T Consensus 264 ~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~ 343 (477)
T TIGR01301 264 LLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVN 343 (477)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 345566677777777777777654 232211 1 133444555556777777888999984 77778888
Q ss_pred HHHHHHHHHHHHhheeecCC-C-C------CCCc--cHHHHHHHHHHHHHHHhcCccchhhhhccccchh--hhHhHhHH
Q psy5074 68 ITMAFCQLLLVAYFVFKNQG-Y-D------MQDY--SWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLE--AKLWSSSL 135 (204)
Q Consensus 68 ~~~~i~~~~~~~~~~~~~~~-~-~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~R~~~~~~ 135 (204)
++.+++.....+.....++. + + .+.. .+..+......+...... ..+++++++|..|++ ..|..+|+
T Consensus 344 ~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~-~siPfal~s~~~~~~~~~~G~~mgi 422 (477)
T TIGR01301 344 IILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAIT-YSIPFALASIRSSNLGAGQGLSMGV 422 (477)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHH-HHHhHHHHHHHccccCCCCcchhhH
Confidence 88888777766543211100 0 0 0000 133444444444444443 458889999999854 45899999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhc--hhHHHHHHHHHHHHHHHHHhhcccCCCC
Q psy5074 136 LMCYSWSCLFLVSKVFMDLIDTVG--SAATYGLLGLICTLGAVFVYTRVPETKN 187 (204)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~i~~~~~~~~~~e~~~ 187 (204)
.|.+..+...+.....+.+.+..| ....+.+.++..+++.+..++.+|+++.
T Consensus 423 lN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 423 LNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999898888877777666555 3356777788888888888888888753
No 217
>KOG3762|consensus
Probab=98.70 E-value=1.1e-07 Score=75.34 Aligned_cols=157 Identities=13% Similarity=0.093 Sum_probs=116.5
Q ss_pred ChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCC
Q psy5074 11 GVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYD 89 (204)
Q Consensus 11 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (204)
+...+.+++=-.+++.|-...- +........+.++.-++.+++.+|+|+-+++.+++.+.++-.+.....
T Consensus 386 g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L--------- 456 (618)
T KOG3762|consen 386 GVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL--------- 456 (618)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh---------
Confidence 3334444554446776644333 667777778888999999999999999999999999888888887766
Q ss_pred CCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHH-HHHHHHHHHHhHHHHHhhchhHHHHHHH
Q psy5074 90 MQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYS-WSCLFLVSKVFMDLIDTVGSAATYGLLG 168 (204)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 168 (204)
++.|..+-.=.+-+...+..|. ..-+|++...|++.|+++.++..... .+|-.+|..+.+.+.+.++-+..|.+++
T Consensus 457 --~n~W~vLPieilqgit~aliWa-a~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~g 533 (618)
T KOG3762|consen 457 --QNPWMVLPIEILQGITHALIWA-AIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFG 533 (618)
T ss_pred --cCchheeeHHHHHHHHHHHHHH-HHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHH
Confidence 3455555444555555555554 34489999999999999999986654 4677889999999999999888888887
Q ss_pred HHHHHHHHHHh
Q psy5074 169 LICTLGAVFVY 179 (204)
Q Consensus 169 ~~~~i~~~~~~ 179 (204)
+.+++.++...
T Consensus 534 iAcl~~l~~~~ 544 (618)
T KOG3762|consen 534 IACLVTLALFI 544 (618)
T ss_pred HHHHHHHHHHH
Confidence 77776655443
No 218
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.69 E-value=3.2e-06 Score=66.24 Aligned_cols=138 Identities=12% Similarity=-0.010 Sum_probs=79.9
Q ss_pred hChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCC
Q psy5074 10 SGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQG 87 (204)
Q Consensus 10 ~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (204)
.+......+.|.+.++ +|.+... .........+..++..+.+++.||++|+..................... .
T Consensus 221 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--- 295 (394)
T PRK11652 221 AGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWF--G--- 295 (394)
T ss_pred HHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c---
Confidence 3334444555666666 6777655 5566666677778888888888888744333222222221111111110 0
Q ss_pred CCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHh
Q psy5074 88 YDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT 157 (204)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (204)
....+.......+...+.+. ..|....+..|..| ++++++.++.+....+++.+++.+.+.+...
T Consensus 296 ---~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 296 ---VMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred ---cccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 01223333333333333333 34555667778887 5789999999999999999999888776544
No 219
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.69 E-value=1.3e-07 Score=73.65 Aligned_cols=167 Identities=8% Similarity=-0.006 Sum_probs=89.1
Q ss_pred HHHHHhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHH---
Q psy5074 4 MTFQRFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLV--- 78 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~--- 78 (204)
.++..+........+.|.++++ .|++.++ +.+.....+..++.+++.|.++||+|.||-++.......+......
T Consensus 15 ~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v 94 (412)
T PF01306_consen 15 FYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYV 94 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666777888876 8999877 8888888999999999999999999977765544433322211111
Q ss_pred HhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCcc---chhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHH
Q psy5074 79 AYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGP---IPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI 155 (204)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~ 155 (204)
+.+..+ .+.+. ...+.....+..+.+ +..+++.+ .. ++.+.-.|=....+.+|..+++.+.|.+.
T Consensus 95 ~~pll~-------~n~~l---g~iig~i~l~~~f~~~~~~~Ea~~er-~s-r~~~feYG~~R~wGSig~ai~s~~~G~L~ 162 (412)
T PF01306_consen 95 FGPLLQ-------SNFWL---GAIIGGIYLGLVFNAGVPLSEAYAER-VS-RRNGFEYGRARMWGSIGFAIASLLAGILF 162 (412)
T ss_dssp HHHHHH-------TT-HH---HHHHTTTTTTTTTTTHHHHHHHHHHH-HH-HHHSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-------HHHHH---HHHHHHHHHHHHHcccchHHHHHHHH-HH-HHhcCCcchHHHHhhHHHHHHHHHhheee
Confidence 111000 01111 111111112222222 22232221 11 12233445566777888888999999988
Q ss_pred HhhchhHHHHHHHHHHHHHHHHHhhccc
Q psy5074 156 DTVGSAATYGLLGLICTLGAVFVYTRVP 183 (204)
Q Consensus 156 ~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 183 (204)
+.. .+..|++.....++..++.++..|
T Consensus 163 ~i~-p~~~fwi~s~~~~il~lll~~~~~ 189 (412)
T PF01306_consen 163 NIN-PNIIFWIASAAAIILLLLLLLLKP 189 (412)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHSS--
T ss_pred eeC-ccHHHHHHHHHHHHHHHHHHHcCC
Confidence 743 346666655555555444444343
No 220
>KOG2325|consensus
Probab=98.65 E-value=3.1e-07 Score=72.64 Aligned_cols=151 Identities=11% Similarity=0.045 Sum_probs=102.5
Q ss_pred CCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCc-hHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHH
Q psy5074 27 GTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGR-RFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTI 104 (204)
Q Consensus 27 g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (204)
+-+.+. ++......++..++++..|+...|.++ |+.++.+++++.++.++........+ ...++.++...+
T Consensus 67 ~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~------~~~y~mL~~R~l- 139 (488)
T KOG2325|consen 67 TATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPN------GVKYLMLVARIL- 139 (488)
T ss_pred CCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhccc------chHHHHHHHHHH-
Confidence 334344 788888999999999999999999886 77788999999999988744433221 123333333333
Q ss_pred HHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHh-------------hchhHHHHHHHHHH
Q psy5074 105 VAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT-------------VGSAATYGLLGLIC 171 (204)
Q Consensus 105 ~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------------~g~~~~~~~~~~~~ 171 (204)
.+.+.+.......|+++....+.|.++++.......++..+||.+...+..- .-+..+-++.+++.
T Consensus 140 -~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~ 218 (488)
T KOG2325|consen 140 -TGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILW 218 (488)
T ss_pred -cCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHH
Confidence 3333333445668999988888899999988877777777777665443321 01234556777777
Q ss_pred HHHHHHHhhcccCC
Q psy5074 172 TLGAVFVYTRVPET 185 (204)
Q Consensus 172 ~i~~~~~~~~~~e~ 185 (204)
++..+...++.+|.
T Consensus 219 i~~~v~i~~~f~E~ 232 (488)
T KOG2325|consen 219 IIYIVIILFFFKEV 232 (488)
T ss_pred HHHHHHHHhheeec
Confidence 77777777777764
No 221
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.62 E-value=3.1e-07 Score=54.61 Aligned_cols=65 Identities=18% Similarity=0.308 Sum_probs=56.2
Q ss_pred HHHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhH
Q psy5074 4 MTFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEI 68 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~ 68 (204)
.++..+.+...+..|.|.++++.|++..+ +.+..+..+..+++++++|.++||++|++..+....
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 45666777788889999999999999877 889999999999999999999999999998765543
No 222
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.58 E-value=1.5e-05 Score=65.28 Aligned_cols=134 Identities=11% Similarity=-0.081 Sum_probs=82.0
Q ss_pred hhHHHHhHHHHHHh-hCCCCC---h-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHH-HHhhHHHHHHHHHHHHhheeec
Q psy5074 12 VSALIYYTVDIFRN-AGTRIA---P-STASIIVGAVQVVVSLLSSLLIDRLGRRFLL-LTSEITMAFCQLLLVAYFVFKN 85 (204)
Q Consensus 12 ~~~~~~~~~~~~~~-~g~~~~---~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~-~~~~~~~~i~~~~~~~~~~~~~ 85 (204)
++....+.|+.... ++-+.. . .+.....+.+..++.++.+.+..|++|-|.. +++...+.++...++... .++
T Consensus 326 ~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~-~~n 404 (599)
T PF06609_consen 326 FFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR-PDN 404 (599)
T ss_pred HHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc-CCC
Confidence 44555555655444 444432 2 5677778888889999999999988876655 456555555444444331 111
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHH
Q psy5074 86 QGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI 155 (204)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~ 155 (204)
.... +....+.+.+.+.... ......+-..|++.-+++.++......+|+.++..++..+.
T Consensus 405 ------~~~~--i~~~~l~g~giG~~~~-~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 405 ------KNAA--IAFLVLAGFGIGGILV-PAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred ------cchH--HHHHHHHHHhHHHHHH-HHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1122 2223333333333222 23355666789999999999999999998888887764433
No 223
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.53 E-value=3.9e-06 Score=64.84 Aligned_cols=139 Identities=12% Similarity=0.120 Sum_probs=81.2
Q ss_pred HHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcC-----chHHHHH-hhHHHHHHHHHHHHhheeecC-CCCCCCcc
Q psy5074 23 FRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLG-----RRFLLLT-SEITMAFCQLLLVAYFVFKNQ-GYDMQDYS 94 (204)
Q Consensus 23 ~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g-----rr~~~~~-~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~ 94 (204)
..|++++..- .....+....+ +..+..|+.+|+.+ ||..+++ +......+..++......-.. ..+.+...
T Consensus 7 IvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~ 85 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF 85 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence 4556665433 33334444433 46888999999999 8876665 444444444433322211111 00001122
Q ss_pred HHHHHHHHHHHHHHHhcC---ccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhH
Q psy5074 95 WIPIFSVCTIVAIFRIGI---GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAA 162 (204)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 162 (204)
+.-.....+....++.+. +....+..+|..|+|+|+++.++...+--+|..++..+.+.+.+.+....
T Consensus 86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~r 156 (403)
T PF03209_consen 86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPER 156 (403)
T ss_pred HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHH
Confidence 322222222222222222 23445789999999999999999999999999999999999888776433
No 224
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.53 E-value=1.8e-05 Score=63.76 Aligned_cols=148 Identities=18% Similarity=0.108 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCc-----hHHH--HHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHH
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGR-----RFLL--LTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIV 105 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~gr-----r~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (204)
.+...+..+.-++.+++..++-.|.+| +... .++.++.+++...+.......+.+. ..+.++.+....+..
T Consensus 315 ~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~--~~s~~~~i~~~~~~~ 392 (475)
T TIGR00924 315 IWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGG--LTSPWFMVLIYLFQT 392 (475)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--ccCHHHHHHHHHHHH
Confidence 466666666666666664443333333 3333 6677777776666554311111000 123333343333333
Q ss_pred HHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHHHHHHHhhccc
Q psy5074 106 AIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTLGAVFVYTRVP 183 (204)
Q Consensus 106 ~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 183 (204)
.......|....+..|..|++.|++.+|+......+|..+++.+.....+..+|.+.+...+...++..++.++..|
T Consensus 393 -~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 393 -LGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred -HHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567888899999999999999999999999999998888877766667777777777666666665554333
No 225
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.52 E-value=1.9e-05 Score=62.43 Aligned_cols=157 Identities=10% Similarity=0.042 Sum_probs=81.3
Q ss_pred HhhChhHHHHhHHHHHHhh-CCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeec
Q psy5074 8 RFSGVSALIYYTVDIFRNA-GTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKN 85 (204)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~ 85 (204)
.....+.+..+.|.++++. |.+..+ .+.......+..+++.+.+.+.+|..+++..........++..++.......
T Consensus 230 ~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~- 308 (413)
T PRK15403 230 SYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLW- 308 (413)
T ss_pred HHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 3444455666788888774 787665 5666666777777777777766544443433222222222222222110000
Q ss_pred CCCCCCCccHH-HHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHH
Q psy5074 86 QGYDMQDYSWI-PIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATY 164 (204)
Q Consensus 86 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 164 (204)
...+. ......+...+.+... |...... ..-.+..++++.++.+.....+...++...+++.+. +-..++
T Consensus 309 ------~~~~~~~~~~~~l~~~G~~~~~-p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~ 379 (413)
T PRK15403 309 ------PHVWLWSVLGTSLYAFGIGLIF-PTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPF 379 (413)
T ss_pred ------cccHHHHHHHHHHHHHHHHHHh-HHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHH
Confidence 11221 2233333333333322 2222111 111223478888888888888888888888877665 444666
Q ss_pred HHHHHHHHHH
Q psy5074 165 GLLGLICTLG 174 (204)
Q Consensus 165 ~~~~~~~~i~ 174 (204)
.....+..+.
T Consensus 380 ~~~~~~~~~~ 389 (413)
T PRK15403 380 HLLAVVAGVI 389 (413)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 226
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.48 E-value=3.7e-05 Score=52.15 Aligned_cols=137 Identities=8% Similarity=0.044 Sum_probs=93.8
Q ss_pred hHHHHHHhhChhHHHHhHHHHHHhhCC------CCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHH
Q psy5074 2 GLMTFQRFSGVSALIYYTVDIFRNAGT------RIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQ 74 (204)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~g~------~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~ 74 (204)
.+.++..+++..........++++.+. +... ..-..+.+....+.+++.+.+.+++|.|+.++++.+...+..
T Consensus 2 g~~f~~~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~ 81 (156)
T PF05978_consen 2 GIGFMFLFTAFQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYI 81 (156)
T ss_pred chHHHHHHHHHhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 456778888877777777777765433 2223 455666777788899999999999999999998888777655
Q ss_pred HHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHh
Q psy5074 75 LLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVF 151 (204)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~ 151 (204)
..... +..+..+....+.+.+.+.-|. ..-.++.+..+++.|++-.++.......+..+|....
T Consensus 82 ~~~~~------------~~~~~l~~~s~l~G~~~a~lW~-aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 82 ASFFY------------PNSYTLYPASALLGFGAALLWT-AQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred HHHHh------------hhHHHHHHHHHHHhhhhHHhhH-hhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44321 2334444444455555444443 3346888999999999988887777776666665443
No 227
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.47 E-value=5.8e-06 Score=66.76 Aligned_cols=145 Identities=14% Similarity=0.028 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCchH-------HHHHhhHHHHHHHHHHHHhhe-eecCCCCCCCccHHHHHHHHHH
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGRRF-------LLLTSEITMAFCQLLLVAYFV-FKNQGYDMQDYSWIPIFSVCTI 104 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~-------~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 104 (204)
........+..++.+++.+++.||.+||+ .+.++.++.+++...+..... ....+. ..+.++.+....+.
T Consensus 312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~--~~s~~~~i~~~~l~ 389 (489)
T PRK10207 312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQG--LTSPWFIVLVYLFQ 389 (489)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--ccCHHHHHHHHHHH
Confidence 44555555666678888899999999987 366677776666544322110 110000 12234444444444
Q ss_pred HHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH----------hhchhHHHHHHHHHHHHH
Q psy5074 105 VAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID----------TVGSAATYGLLGLICTLG 174 (204)
Q Consensus 105 ~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~g~~~~~~~~~~~~~i~ 174 (204)
+.+-. ...|....++.+..|++.++.++++.+....+|+.++..+...... .....+.|...+...++.
T Consensus 390 g~Ge~-~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 468 (489)
T PRK10207 390 SLGEL-FISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGV 468 (489)
T ss_pred HHHHH-HHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHH
Confidence 44433 3455666788889999999999999998888888888777654421 011234555555555555
Q ss_pred HHHHhh
Q psy5074 175 AVFVYT 180 (204)
Q Consensus 175 ~~~~~~ 180 (204)
.++.+.
T Consensus 469 ~v~~~~ 474 (489)
T PRK10207 469 AVVMAL 474 (489)
T ss_pred HHHHHH
Confidence 554444
No 228
>KOG2563|consensus
Probab=98.44 E-value=1.1e-05 Score=62.92 Aligned_cols=119 Identities=13% Similarity=0.014 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccH--HHHHHHHHHHHHHHh
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSW--IPIFSVCTIVAIFRI 110 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 110 (204)
.+.+.++.+..++..+.+.|+.||+|-|...+++.....++..+=.......- ++..+ .....-.+.....-.
T Consensus 82 ~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v-----~~~f~~~l~~~Gq~iaa~Aq~F 156 (480)
T KOG2563|consen 82 DWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFV-----PPLFRRPLTHTGQSIAAAAQPF 156 (480)
T ss_pred HHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccc-----cccchhhhhHHhHHHHHHhhhH
Confidence 78999999999999999999999999999999999999988877443321100 01222 111111121111111
Q ss_pred cCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHh
Q psy5074 111 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT 157 (204)
Q Consensus 111 ~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (204)
.-.++.-+..-+||+++|+++..+....+.+|..++..+.+.+..+
T Consensus 157 -im~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 157 -ILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred -hhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 1224445667789999999999999999889988888777766554
No 229
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.40 E-value=1.3e-05 Score=64.94 Aligned_cols=144 Identities=13% Similarity=-0.005 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHHHHHHH----HHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHH
Q psy5074 33 STASIIVGAVQVVVSLLS----SLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIF 108 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~----g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (204)
.+...+..+..++..++. +++.||.+.++.+.++.++.+++...+.......+.+. ..+.++.+....+. ...
T Consensus 319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~--~vs~~~~~~~~~l~-~~g 395 (500)
T PRK09584 319 EQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAG--IVSVNWLIASYGLQ-SIG 395 (500)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--ccCHHHHHHHHHHH-HHH
Confidence 455555555555555555 45555555667788888888888877765543221110 11223333333333 333
Q ss_pred HhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHH----------HhhchhHHHHHHHHHHHHHHHHH
Q psy5074 109 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI----------DTVGSAATYGLLGLICTLGAVFV 178 (204)
Q Consensus 109 ~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~----------~~~g~~~~~~~~~~~~~i~~~~~ 178 (204)
.....|....++.+..|++.|++.+|.......++..++..+..... ...+..+.|...+...++..++.
T Consensus 396 e~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~ 475 (500)
T PRK09584 396 ELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLM 475 (500)
T ss_pred HHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44556777788999999999999999877666666665555543221 01124456666665555444433
Q ss_pred h
Q psy5074 179 Y 179 (204)
Q Consensus 179 ~ 179 (204)
+
T Consensus 476 ~ 476 (500)
T PRK09584 476 L 476 (500)
T ss_pred H
Confidence 3
No 230
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.37 E-value=0.0001 Score=54.67 Aligned_cols=149 Identities=17% Similarity=0.023 Sum_probs=91.0
Q ss_pred hHHHHhHHHHHHhhCCCCC--h-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCC
Q psy5074 13 SALIYYTVDIFRNAGTRIA--P-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYD 89 (204)
Q Consensus 13 ~~~~~~~~~~~~~~g~~~~--~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (204)
.......+.+..+.+.+.. . ........+...++.++.|.+.||+|||+.+..+................ .
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-~----- 92 (338)
T COG0477 19 GLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN-V----- 92 (338)
T ss_pred chHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc-c-----
Confidence 3344556666666655542 3 67777778888888899999999999998877777654444334433311 0
Q ss_pred CCCccHHHHHHHHHHHHHHHhcCccchhhhhccccch-hhhHhHhHHHHH-HHHHHHHHHHHHhHHHHHh--hchhHHHH
Q psy5074 90 MQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPL-EAKLWSSSLLMC-YSWSCLFLVSKVFMDLIDT--VGSAATYG 165 (204)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~R~~~~~~~~~-~~~~~~~~~~~~~~~l~~~--~g~~~~~~ 165 (204)
..+.........+...+ ...+....+..|..|+ +.|+...+.... ....+..+++.+.+.+... .+|+..+.
T Consensus 93 ---~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (338)
T COG0477 93 ---GLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFL 168 (338)
T ss_pred ---hHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 12222222222222222 2345667889999998 678888888877 4666777777655555443 56777555
Q ss_pred HHHHHH
Q psy5074 166 LLGLIC 171 (204)
Q Consensus 166 ~~~~~~ 171 (204)
......
T Consensus 169 ~~~~~~ 174 (338)
T COG0477 169 LAALLG 174 (338)
T ss_pred HHHHHH
Confidence 444443
No 231
>KOG2563|consensus
Probab=98.25 E-value=8.3e-06 Score=63.63 Aligned_cols=153 Identities=18% Similarity=0.138 Sum_probs=92.1
Q ss_pred hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHH-HHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHH
Q psy5074 26 AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFL-LLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCT 103 (204)
Q Consensus 26 ~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (204)
.|++... +.......+++++++.+.|.+.||.+.-+. .++......++. .+......+. ...+... ..+.
T Consensus 296 sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~-~~l~~~t~~~------~~~viv~-~t~~ 367 (480)
T KOG2563|consen 296 SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGT-LMLLTCTLFL------GDSVIVF-TTCG 367 (480)
T ss_pred ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHhhccC------CceEehh-hhHH
Confidence 4666533 788888899999999999999999865443 333333333332 2222211111 1223222 2333
Q ss_pred HHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc----hhHHHHHHHHHHHHHHHHHh
Q psy5074 104 IVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG----SAATYGLLGLICTLGAVFVY 179 (204)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g----~~~~~~~~~~~~~i~~~~~~ 179 (204)
..+.+..+..|+-.-+..|..-+..-++..|+.+..+.+-+.+-.+..+...+..+ +...-+.......+..++..
T Consensus 368 ~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva 447 (480)
T KOG2563|consen 368 LLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVA 447 (480)
T ss_pred HHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHh
Confidence 33344556667776777887655566778899988888888888888888877766 43333344444445555555
Q ss_pred hcccCCC
Q psy5074 180 TRVPETK 186 (204)
Q Consensus 180 ~~~~e~~ 186 (204)
++.|+-+
T Consensus 448 ~~r~~y~ 454 (480)
T KOG2563|consen 448 FFRPDYR 454 (480)
T ss_pred hhhhhHH
Confidence 5444433
No 232
>PTZ00207 hypothetical protein; Provisional
Probab=98.07 E-value=9.5e-05 Score=60.76 Aligned_cols=167 Identities=10% Similarity=-0.007 Sum_probs=105.5
Q ss_pred HHHhhChhHHHHhHHHHHHhh-CCCCCh--hH-HHHHHHHHHHHHHHHHHHhhhhcCch--------H-HHHHhhHHHHH
Q psy5074 6 FQRFSGVSALIYYTVDIFRNA-GTRIAP--ST-ASIIVGAVQVVVSLLSSLLIDRLGRR--------F-LLLTSEITMAF 72 (204)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~-~~~~~~~~~~~~~~~~g~l~d~~grr--------~-~~~~~~~~~~i 72 (204)
++....-..+...+-++.+.+ |.+.+. .. ..++.++++.+|.+..|.++....|| + .+.+..+ +.+
T Consensus 363 ~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~ 441 (591)
T PTZ00207 363 FCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CII 441 (591)
T ss_pred HHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHH
Confidence 333333344556677888887 773332 22 67888999999999999887322222 2 2233333 555
Q ss_pred HHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHH-HHHh
Q psy5074 73 CQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLV-SKVF 151 (204)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~-~~~~ 151 (204)
+.++++... +. ....+...+.+.+++..+. +....++|+|. |+-|+-.-+.....-+|+.+- ..++
T Consensus 442 ~~lll~~~~----------p~-~~L~~~~~lvg~~~G~~~~-~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~ 508 (591)
T PTZ00207 442 TMLTLFLTL----------PK-AALPLPYFIAAFANGFMAA-TIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLY 508 (591)
T ss_pred HHHHHHHHC----------Cc-cHhHHHHHHHHHHhhHhHH-HHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHH
Confidence 555555441 11 2334444555566666554 55688999999 888888777777777776654 5567
Q ss_pred HHHHHhh-------------chhHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5074 152 MDLIDTV-------------GSAATYGLLGLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 152 ~~l~~~~-------------g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 186 (204)
+.+.|.. -.+.+|.+.+.+++.+.+....+.-++|
T Consensus 509 G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 509 GEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred HHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 7777642 2567899999999998888766554554
No 233
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.03 E-value=7e-05 Score=59.63 Aligned_cols=152 Identities=16% Similarity=0.104 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcC
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGI 112 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (204)
+....+..++.+++..+.....-+..-|+++..+.+..++..+.-.......+..... +..+..+.--.+........+
T Consensus 258 ~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi-~d~~f~lgd~~l~~~~~~i~~ 336 (433)
T PF03092_consen 258 GTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGI-PDQWFALGDTILEEVIGMIAF 336 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCc-CCeEEEEEhHHHHHHHHHHHH
Confidence 4445556666677777776666666777877777666655554433222111110000 111222222223333333333
Q ss_pred ccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhch--------hHHHHHHHHHHHHHHHHHhhcccC
Q psy5074 113 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS--------AATYGLLGLICTLGAVFVYTRVPE 184 (204)
Q Consensus 113 ~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~--------~~~~~~~~~~~~i~~~~~~~~~~e 184 (204)
-|.. ...+|+.|+...|+..++.....++|..++..+...+.+..+. ....++.....++... ...++|+
T Consensus 337 mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~-ll~lLp~ 414 (433)
T PF03092_consen 337 MPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLP-LLFLLPP 414 (433)
T ss_pred HHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH-HHHHcCC
Confidence 3333 6789999999999999999999999999999988888776552 1233344444433333 3334676
Q ss_pred CCC
Q psy5074 185 TKN 187 (204)
Q Consensus 185 ~~~ 187 (204)
+++
T Consensus 415 ~~~ 417 (433)
T PF03092_consen 415 QKR 417 (433)
T ss_pred Cch
Confidence 553
No 234
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.99 E-value=0.002 Score=51.72 Aligned_cols=123 Identities=10% Similarity=0.013 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHH-HHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheee--cCCCC--------CCC---------
Q psy5074 33 STASIIVGAVQV-VVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFK--NQGYD--------MQD--------- 92 (204)
Q Consensus 33 ~~~~~~~~~~~~-~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~--------~~~--------- 92 (204)
.+.-....+... +..++.+++++|++||+.+-+..........+.++..... ..+++ ..+
T Consensus 46 ~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~ 125 (472)
T TIGR00769 46 PFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAI 125 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHH
Confidence 333333333333 3378889999999999988776666665555554432111 00000 000
Q ss_pred -ccHHHHHHHHHHHHHHHhcCc-cchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH
Q psy5074 93 -YSWIPIFSVCTIVAIFRIGIG-PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID 156 (204)
Q Consensus 93 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 156 (204)
..|. .....+..-.++...- -+.|.+++|+++.++-.+-.++....+++|..+++.+..++.+
T Consensus 126 ~~~W~-~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 126 LRIWS-FALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred Hhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 1122222222222222 3778999999999999999999999999999999988887763
No 235
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.93 E-value=0.0027 Score=51.41 Aligned_cols=124 Identities=9% Similarity=-0.012 Sum_probs=76.7
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHhhhhcCc--hH-----HHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHH
Q psy5074 27 GTRIAPSTASIIVGAVQVVVSLLSSLLIDRLGR--RF-----LLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIF 99 (204)
Q Consensus 27 g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr--r~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (204)
|++..+.+..++..+.-++.+++.+++=.|..| |. -+.++.+..+++...+.........+ ...+.++ ++
T Consensus 305 g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~--~~~s~~w-l~ 381 (493)
T PRK15462 305 GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMY--GHSSLPL-MV 381 (493)
T ss_pred ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCcCHHH-HH
Confidence 344344677778777777777777766566532 21 35677888888877765433221111 1123333 33
Q ss_pred HHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHH-HHHHHHHHHHhHH
Q psy5074 100 SVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYS-WSCLFLVSKVFMD 153 (204)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~-~~~~~~~~~~~~~ 153 (204)
..............|+..+.++++.|++.|+..+|...... .++..++..+...
T Consensus 382 ~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~ 436 (493)
T PRK15462 382 LGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQ 436 (493)
T ss_pred HHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455567778999999999999999999999985533 4555555444443
No 236
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=97.91 E-value=7.7e-05 Score=56.73 Aligned_cols=85 Identities=14% Similarity=0.094 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHh----------------hchhHHH
Q psy5074 101 VCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT----------------VGSAATY 164 (204)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------------~g~~~~~ 164 (204)
.++.+.+.+. ..+....+++++.|+|++++.+++.+.+..+|..++|.+.+.+... .+|+.++
T Consensus 17 ~f~~g~G~~~-lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~y 95 (310)
T TIGR01272 17 LFVLASGLTI-LQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPY 95 (310)
T ss_pred HHHHHhhHHH-HHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHH
Confidence 3333333333 3456678999999999999999999999999999999999987732 3677888
Q ss_pred HHHHHHHHHHHHHH-hhcccCCC
Q psy5074 165 GLLGLICTLGAVFV-YTRVPETK 186 (204)
Q Consensus 165 ~~~~~~~~i~~~~~-~~~~~e~~ 186 (204)
+..+.+..+..+.. +.-.||.+
T Consensus 96 l~ia~~~~~~~i~~~~~~~p~~~ 118 (310)
T TIGR01272 96 LLLAGALAVLAIIFAFLPLPELQ 118 (310)
T ss_pred HHHHHHHHHHHHHHHHccCCCCC
Confidence 76666555444433 33346544
No 237
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=97.89 E-value=0.00016 Score=43.50 Aligned_cols=70 Identities=16% Similarity=0.011 Sum_probs=62.0
Q ss_pred ChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHh
Q psy5074 11 GVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAY 80 (204)
Q Consensus 11 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~ 80 (204)
+=+++...+|.+.++.+++.++ +++.+..++++.+|++...++.++.++|+.+..+.+...+....++..
T Consensus 7 gRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 7 GRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356778899999999999877 999999999999999999999999888899999999988888888876
No 238
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=97.82 E-value=0.0031 Score=49.52 Aligned_cols=152 Identities=11% Similarity=-0.059 Sum_probs=93.4
Q ss_pred HHHHHHh-hCCCCCh--hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccH
Q psy5074 19 TVDIFRN-AGTRIAP--STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSW 95 (204)
Q Consensus 19 ~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 95 (204)
.|++.+. .|++.++ ..+.-+..-..+...++...+.|..|-|++++++.+...+...++.+.. ...
T Consensus 27 ~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~-----------sv~ 95 (412)
T PF01770_consen 27 TPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT-----------SVL 95 (412)
T ss_pred hHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC-----------cHH
Confidence 3444443 6777665 3333444445667778889999999999999999888888777766652 222
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc--hhHHHHHHHHHHHH
Q psy5074 96 IPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG--SAATYGLLGLICTL 173 (204)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~i 173 (204)
.....-...+...+ .....++|+=...|+++-.++.+......-+|..++..++..+....+ +....++-.....+
T Consensus 96 ~mq~~q~~yg~~~a--~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~ 173 (412)
T PF01770_consen 96 AMQLMQFFYGLATA--AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSL 173 (412)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 22222222322222 233455666667788888889999988888888888877776665333 33333333333344
Q ss_pred HHHHHhhcccC
Q psy5074 174 GAVFVYTRVPE 184 (204)
Q Consensus 174 ~~~~~~~~~~e 184 (204)
++++.++ +|.
T Consensus 174 a~~~~~f-LP~ 183 (412)
T PF01770_consen 174 ALLIALF-LPM 183 (412)
T ss_pred HHHHHHH-cCC
Confidence 4444444 554
No 239
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.78 E-value=0.0022 Score=50.17 Aligned_cols=144 Identities=15% Similarity=0.022 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHH-HHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcC
Q psy5074 34 TASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEIT-MAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGI 112 (204)
Q Consensus 34 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (204)
....+..+...+-+++.|.++|+.|+||..+-.+.. ..+....+.+.... ...+..+..+.+...++...
T Consensus 62 y~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~--------s~~~~~l~~~il~~i~~~~s- 132 (438)
T COG2270 62 YASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPG--------SYLLLLLLFLILASIGFEFS- 132 (438)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCC--------chHHHHHHHHHHHHHhcchh-
Confidence 455566666777888889999999988766544444 44444444444210 12233334444444444433
Q ss_pred ccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhH--HHH----------------HhhchhHHHHHHHHHHHHH
Q psy5074 113 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFM--DLI----------------DTVGSAATYGLLGLICTLG 174 (204)
Q Consensus 113 ~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~--~l~----------------~~~g~~~~~~~~~~~~~i~ 174 (204)
+....++..++.++++-++..++....+++|+.+.-...- ... +...-|..+.+.++..++.
T Consensus 133 ~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~ 212 (438)
T COG2270 133 NVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLF 212 (438)
T ss_pred heehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHH
Confidence 3355688899999988888888887777777655433321 111 1223466777888888888
Q ss_pred HHHHhhcccCCC
Q psy5074 175 AVFVYTRVPETK 186 (204)
Q Consensus 175 ~~~~~~~~~e~~ 186 (204)
.+..++..||..
T Consensus 213 ~iPm~~~v~~~~ 224 (438)
T COG2270 213 ALPMILNVHDAE 224 (438)
T ss_pred HhHHHhcccccc
Confidence 777777666543
No 240
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=97.68 E-value=0.014 Score=45.62 Aligned_cols=140 Identities=14% Similarity=0.042 Sum_probs=95.6
Q ss_pred hhChhHHHHhHHHHHH------hhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhh-hcCchHHHHHhhHHHHHHHHHHHHh
Q psy5074 9 FSGVSALIYYTVDIFR------NAGTRIAP-STASIIVGAVQVVVSLLSSLLID-RLGRRFLLLTSEITMAFCQLLLVAY 80 (204)
Q Consensus 9 ~~~~~~~~~~~~~~~~------~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d-~~grr~~~~~~~~~~~i~~~~~~~~ 80 (204)
+.....+.+++.+.+- -+|++..+ ...+.....+.+++....|++.. |.++|+.-.+++..+.++...+...
T Consensus 216 fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a 295 (403)
T PF03209_consen 216 FLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA 295 (403)
T ss_pred HHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455444432 25788766 78889999999999999998776 6788888888988888888777665
Q ss_pred heeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHh
Q psy5074 81 FVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT 157 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (204)
...+ ..+.......+++.+.+... ......+.++.++++.|+.+|...........++..+.+.+.|.
T Consensus 296 ~~~~--------~~~~~~~~~~l~G~g~G~f~-vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 296 GPLG--------SPWLFRPGVFLLGLGNGLFT-VGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred Hhcc--------cchHHHHHHHHHHHhhhHHH-HHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4322 33444444444444433322 22335677888889999999999888888888888888777664
No 241
>KOG1330|consensus
Probab=97.48 E-value=0.00068 Score=53.47 Aligned_cols=138 Identities=12% Similarity=0.012 Sum_probs=77.5
Q ss_pred hHHHHhHHHHHHh----hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCc-------hHHHHHhhHHHHHHHHHHHH-
Q psy5074 13 SALIYYTVDIFRN----AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGR-------RFLLLTSEITMAFCQLLLVA- 79 (204)
Q Consensus 13 ~~~~~~~~~~~~~----~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~gr-------r~~~~~~~~~~~i~~~~~~~- 79 (204)
.++..|.|..... .|.+.+. .+...+...++.+|.+.+|.++||+-| .+.-...+...+..++....
T Consensus 261 Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~ 340 (493)
T KOG1330|consen 261 GSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFL 340 (493)
T ss_pred cccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHH
Confidence 3455566655443 3655555 677788888899999999999999422 22222222222222222111
Q ss_pred hheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHH-HHHHhHHHHHh
Q psy5074 80 YFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFL-VSKVFMDLIDT 157 (204)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 157 (204)
.....+ ...+..+++..+........+.+. .-+..|+.|+++|.++.++......+.+-. +|++.+.+.++
T Consensus 341 ~~~~~~------~s~~~~~il~~~g~~~~~~~~a~n-~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~ 412 (493)
T KOG1330|consen 341 FPAFTS------SSMIFGLILFLVGETISWFNWATN-NPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDK 412 (493)
T ss_pred HHhhhh------HHHHHHHHHHHHHHHHHhcccccc-cceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHH
Confidence 111111 122233333333333333333322 246788899999999999998887776554 55588888775
No 242
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.45 E-value=0.013 Score=49.19 Aligned_cols=71 Identities=10% Similarity=0.050 Sum_probs=48.7
Q ss_pred HHHHhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHH-HHHHHHHHHHHhhhhcCc--hHHHHHhhHHHHHHHH
Q psy5074 5 TFQRFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGA-VQVVVSLLSSLLIDRLGR--RFLLLTSEITMAFCQL 75 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~-~~~~~~~~~g~l~d~~gr--r~~~~~~~~~~~i~~~ 75 (204)
.+......+.+..|+|.++++ +|++... ........+ +.+++.+++|+++||+++ |+.+..+.+...+..+
T Consensus 339 ~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~ 414 (633)
T TIGR00805 339 QVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYL 414 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHH
Confidence 344556667788899999886 7887755 555555444 567899999999999984 4555555555544433
No 243
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.45 E-value=0.017 Score=46.06 Aligned_cols=169 Identities=11% Similarity=-0.009 Sum_probs=93.2
Q ss_pred hHHHHhHHHHHHhhC-CCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHH----HHHHHHHhheeecC
Q psy5074 13 SALIYYTVDIFRNAG-TRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAF----CQLLLVAYFVFKNQ 86 (204)
Q Consensus 13 ~~~~~~~~~~~~~~g-~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i----~~~~~~~~~~~~~~ 86 (204)
-...+-.|.++.+.. -+.-. ........+..++.....|...||..|.+..-.+.+..-+ ++............
T Consensus 19 R~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~ 98 (432)
T PF06963_consen 19 RMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSS 98 (432)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 344555566666642 12222 5566667777788888889999999999876655544322 22222221111111
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHhcCccchhh----hhcccc--chhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhch
Q psy5074 87 GYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWF----MMAEII--PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS 160 (204)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~~--p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 160 (204)
..+...............+.....+.....-+ ++..+. +++.+++.++...-.--.+..++|.+.+.+.+..+.
T Consensus 99 ~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~ 178 (432)
T PF06963_consen 99 SSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASP 178 (432)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCH
Confidence 00000111111221222222212111111111 112222 456677777777777788999999999999998888
Q ss_pred hHHHHHHHHHHHHHHHHHhhc
Q psy5074 161 AATYGLLGLICTLGAVFVYTR 181 (204)
Q Consensus 161 ~~~~~~~~~~~~i~~~~~~~~ 181 (204)
.....+.+...++....-+++
T Consensus 179 ~~~~~~i~~~N~~S~~vEy~~ 199 (432)
T PF06963_consen 179 VIAAIFIAGWNLASVFVEYFL 199 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777778888888877766543
No 244
>KOG3626|consensus
Probab=97.38 E-value=0.002 Score=53.98 Aligned_cols=169 Identities=11% Similarity=0.037 Sum_probs=110.6
Q ss_pred HHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhee-----------
Q psy5074 16 IYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVF----------- 83 (204)
Q Consensus 16 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~----------- 83 (204)
..-..++=++++++.+. +++....-++..+...+..+...|..|-+++-++.++++++.++.++-...
T Consensus 117 ~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~ 196 (735)
T KOG3626|consen 117 NSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVI 196 (735)
T ss_pred hhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhh
Confidence 33344443457888765 777788888888999999999999999999999999999998887752000
Q ss_pred --ecCCC---------------------CC---CCccHHHHHHHHHHHHHHHhcCc---cchhhhhccccchhhhHhHhH
Q psy5074 84 --KNQGY---------------------DM---QDYSWIPIFSVCTIVAIFRIGIG---PIPWFMMAEIIPLEAKLWSSS 134 (204)
Q Consensus 84 --~~~~~---------------------~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~ 134 (204)
...++ +. ..........+++.....+.|-. ++...|+-|...+++-..-.|
T Consensus 197 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlg 276 (735)
T KOG3626|consen 197 KQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLG 276 (735)
T ss_pred hccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHH
Confidence 00000 00 01222223333333344444433 445579999998888888999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHh------------------hc-hhHHHHHHHHHHHHHHHHHhhcccCC
Q psy5074 135 LLMCYSWSCLFLVSKVFMDLIDT------------------VG-SAATYGLLGLICTLGAVFVYTRVPET 185 (204)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~~------------------~g-~~~~~~~~~~~~~i~~~~~~~~~~e~ 185 (204)
+.+.+..+|.++|-.+.+..... .| |+..|++.+.+.++..+..++ .|++
T Consensus 277 i~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~-fPk~ 345 (735)
T KOG3626|consen 277 ILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFF-FPKE 345 (735)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh-Cccc
Confidence 99888888877776666655432 12 545677778887777777666 5554
No 245
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=97.36 E-value=2.5e-05 Score=63.72 Aligned_cols=167 Identities=14% Similarity=0.020 Sum_probs=1.4
Q ss_pred HHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhh----ee--ecC
Q psy5074 14 ALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYF----VF--KNQ 86 (204)
Q Consensus 14 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~----~~--~~~ 86 (204)
.+..-.+++=++++++..+ +.+.+..-++..+..++..++.+|-.|-|++-++.++++++.++.+.=. .+ .+.
T Consensus 21 ~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~ 100 (539)
T PF03137_consen 21 YVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEA 100 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccc
Confidence 3444556666668998877 8889999999999999999999998888888889999988888876411 00 000
Q ss_pred C------------C---------------C--CCCccHHHHHHHHHHHHHHHhcCc---cchhhhhccccchhhhHhHhH
Q psy5074 87 G------------Y---------------D--MQDYSWIPIFSVCTIVAIFRIGIG---PIPWFMMAEIIPLEAKLWSSS 134 (204)
Q Consensus 87 ~------------~---------------~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~ 134 (204)
+ . + ...........+.+.....+.+.. ++..+|+-|..+++.-+.-.|
T Consensus 101 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiG 180 (539)
T PF03137_consen 101 SNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIG 180 (539)
T ss_dssp ---------------------------------------------------SSS--------------------------
T ss_pred cccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchh
Confidence 0 0 0 011122223333444444444433 455679999999999988899
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHh---------------------hc-hhHHHHHHHHHHHHHHHHHhh
Q psy5074 135 LLMCYSWSCLFLVSKVFMDLIDT---------------------VG-SAATYGLLGLICTLGAVFVYT 180 (204)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~~---------------------~g-~~~~~~~~~~~~~i~~~~~~~ 180 (204)
+.+....+|..+|-.+.+...+. .| |...|.+.+.+.++..+..+.
T Consensus 181 i~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~ 248 (539)
T PF03137_consen 181 ILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF 248 (539)
T ss_dssp --------------------------------------------------------------------
T ss_pred hhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888877776665555433321 12 444556666666666665554
No 246
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=97.32 E-value=0.0036 Score=48.88 Aligned_cols=117 Identities=10% Similarity=-0.040 Sum_probs=74.0
Q ss_pred HHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchh---hhHhHhHHHH
Q psy5074 61 FLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLE---AKLWSSSLLM 137 (204)
Q Consensus 61 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~R~~~~~~~~ 137 (204)
|.++++.++..++.+++.........+. ..........+.+...+.+ +.-|.......|.++++ +|.+...+.+
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~--~~~~~~~~~gL~lia~G~G-~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY 78 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPS--GIQLGLFYIGLALIAVGTG-GIKPNISPFGADQYDEDDDSRRDSFFNWFY 78 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC--------CHHHHHHHHHHHHHH-CCHHHHHHHHHHCSSTTTTTHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhh--hHHHHHHHHHHHHHHhccc-cccccHHHHHHHHhcccchhhhhhhHHHHH
Confidence 4456677777777777444332221100 0112333433444333333 34456667888888665 5677888889
Q ss_pred HHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHHHHHHHhh
Q psy5074 138 CYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTLGAVFVYT 180 (204)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 180 (204)
...++|+.++..+.+++.++.||...|.+.++..+++.+..+.
T Consensus 79 ~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 79 WGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998888887777777665543
No 247
>KOG3098|consensus
Probab=97.19 E-value=0.031 Score=44.74 Aligned_cols=120 Identities=18% Similarity=0.108 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh---cCchHHHHHhhHHHHHHHHHHHHhheeec-----CCCCC-CCccHHHHHHHHHH
Q psy5074 34 TASIIVGAVQVVVSLLSSLLIDR---LGRRFLLLTSEITMAFCQLLLVAYFVFKN-----QGYDM-QDYSWIPIFSVCTI 104 (204)
Q Consensus 34 ~~~~~~~~~~~~~~~~~g~l~d~---~grr~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~ 104 (204)
........+..++....+.+.+| +||++.+.++..+..+..++......... .+++. ..............
T Consensus 283 i~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l 362 (461)
T KOG3098|consen 283 IYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFL 362 (461)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHH
Confidence 34445556666777777777755 78899888888777777766554432221 11100 01112122222222
Q ss_pred HHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHH
Q psy5074 105 VAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDL 154 (204)
Q Consensus 105 ~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l 154 (204)
.+..-..+....+.++.+.. +++|..+.++...-..+++.++.+..+..
T Consensus 363 ~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 363 LGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred HhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 22223334445567778878 56688888888777777766655555443
No 248
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.16 E-value=0.038 Score=44.09 Aligned_cols=131 Identities=11% Similarity=-0.006 Sum_probs=83.3
Q ss_pred HHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCc
Q psy5074 15 LIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDY 93 (204)
Q Consensus 15 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (204)
+...+..++...|++... +..-....+.++.+.+...++.+|+|..|.=+++......+..+.......+..+.+ ...
T Consensus 277 f~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~-~~s 355 (432)
T PF06963_consen 277 FGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFS-SIS 355 (432)
T ss_pred CcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCch-hhH
Confidence 344455666667888766 777778888899999999999999998887777766666555554433332221000 011
Q ss_pred cHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHH
Q psy5074 94 SWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLV 147 (204)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~ 147 (204)
....+........+.- ++......++.|..|+++|++..|..+...++...+.
T Consensus 356 ~~~l~~gi~~SR~GLW-~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~ 408 (432)
T PF06963_consen 356 AYLLLGGIALSRIGLW-SFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLS 408 (432)
T ss_pred HHHHHHHHHHHHHHHH-hhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence 1222222222333222 2333445688999999999999999988887765543
No 249
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.16 E-value=0.049 Score=43.76 Aligned_cols=165 Identities=14% Similarity=0.119 Sum_probs=99.0
Q ss_pred HHHHhHHHHHHh--hCCCCChhHHHHHHHHHHHHHHHHHHHhhhhcCch-------HHHHHhhHHHHHHHHHHHHhheee
Q psy5074 14 ALIYYTVDIFRN--AGTRIAPSTASIIVGAVQVVVSLLSSLLIDRLGRR-------FLLLTSEITMAFCQLLLVAYFVFK 84 (204)
Q Consensus 14 ~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr-------~~~~~~~~~~~i~~~~~~~~~~~~ 84 (204)
.+..|.....+. +|++..+.+..+...+.-++.+++..++..|.+|| .-+-++.++++.+.+.+.......
T Consensus 306 sl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~ 385 (498)
T COG3104 306 SLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWF 385 (498)
T ss_pred hHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444433322 34555557788888888888888888887775544 133456666666666555441111
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHH------HHHhh
Q psy5074 85 NQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMD------LIDTV 158 (204)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~------l~~~~ 158 (204)
. +++ ...+....+.............+|+...++..+.|++..+..++........+..++..+.+. ..+..
T Consensus 386 ~-~~~-~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~ 463 (498)
T COG3104 386 G-GPS-GLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAF 463 (498)
T ss_pred c-CCC-CCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhh
Confidence 1 101 123334444444455556777888888999999999999988888877777776666655552 22333
Q ss_pred chhHHHHHHHHHHHHHHHHHhh
Q psy5074 159 GSAATYGLLGLICTLGAVFVYT 180 (204)
Q Consensus 159 g~~~~~~~~~~~~~i~~~~~~~ 180 (204)
.....|..++....+..+..+.
T Consensus 464 ~~~~~F~~~g~v~i~~~~~~~~ 485 (498)
T COG3104 464 IEGRVFGTIGVVAIVIGILLLL 485 (498)
T ss_pred hhhhhHHHHHHHHHHHHHHHHH
Confidence 3445566666666665555444
No 250
>KOG3098|consensus
Probab=97.09 E-value=0.04 Score=44.16 Aligned_cols=134 Identities=13% Similarity=0.054 Sum_probs=95.2
Q ss_pred HHHHHhhChhHHHHhHHHHHHhh---C---CCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHH
Q psy5074 4 MTFQRFSGVSALIYYTVDIFRNA---G---TRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLL 76 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~---g---~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~ 76 (204)
...+.+.++..-.+-.+.+.+.. | ++... .....+.+....+.+++.+.+.|+.|.|..+.++..........
T Consensus 17 g~~~~f~~~~s~~fi~esvi~sv~~~~~g~i~~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~g 96 (461)
T KOG3098|consen 17 GFLFLFTAYDSQGFIAESVIHSVHERGPGGISAYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLG 96 (461)
T ss_pred hHHHHhHhhhhhHHHHHHHHHHHHhcCCCCcCCCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHH
Confidence 34455555555555555555543 2 33333 45577788888999999999999999999999988888777666
Q ss_pred HHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHH
Q psy5074 77 LVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKV 150 (204)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~ 150 (204)
.... ..+..+..-.+.+.+.+.-+. -.-.|.+|..++|.+.+-.++.......+.++|...
T Consensus 97 fl~~------------N~y~~yfssallG~Gaallw~-GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~ 157 (461)
T KOG3098|consen 97 FLFP------------NSYYLYFSSALLGFGAALLWT-GQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGII 157 (461)
T ss_pred HHhc------------chHHHHHHHHHhhhhHHheec-ccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHh
Confidence 5543 456666666666666665443 334689999999999999999988888777766544
No 251
>KOG3764|consensus
Probab=97.05 E-value=0.0019 Score=50.22 Aligned_cols=139 Identities=11% Similarity=0.020 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHH--HhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHh
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGRRFLLL--TSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRI 110 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (204)
........+...+++.+.|.++||++..+++. .+.+...++....-+.... ...+......+........
T Consensus 309 G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~--------~~L~vp~~~l~~~i~~~da 380 (464)
T KOG3764|consen 309 GLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSI--------AQLWVPNFGLGFGIGLADA 380 (464)
T ss_pred eeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhH--------HHHhhhhHHHHHHHHHHHH
Confidence 55666677888999999999999999444332 2333333333222222110 0112222222222222222
Q ss_pred cCccchhhhhccccchh---hhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHHHHHHHhh
Q psy5074 111 GIGPIPWFMMAEIIPLE---AKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTLGAVFVYT 180 (204)
Q Consensus 111 ~~~~~~~~~~~e~~p~~---~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 180 (204)
...|.. .+..|.-..+ .-+...++......++..++|.+.+.+.+..|.+|...+.+....+..-+..+
T Consensus 381 sl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l 452 (464)
T KOG3764|consen 381 SLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL 452 (464)
T ss_pred HHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 2233322222 45677888888889999999999999999999998888888877776554443
No 252
>KOG3762|consensus
Probab=96.94 E-value=0.0018 Score=52.21 Aligned_cols=70 Identities=23% Similarity=0.251 Sum_probs=53.5
Q ss_pred hChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHH-HHHHHHHHH
Q psy5074 10 SGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITM-AFCQLLLVA 79 (204)
Q Consensus 10 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~-~i~~~~~~~ 79 (204)
.+...+...++.+.+++|++.++ ..++...-+..+++.+++|+++||+.+||.++++..+. ..+.+++.+
T Consensus 25 ~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~f 96 (618)
T KOG3762|consen 25 ARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVF 96 (618)
T ss_pred ecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheee
Confidence 34455677888999999999887 78888888899999999999999998877666555444 444444443
No 253
>KOG0637|consensus
Probab=96.86 E-value=0.00074 Score=53.18 Aligned_cols=140 Identities=14% Similarity=-0.011 Sum_probs=83.6
Q ss_pred hhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhh----cCchHHHHHhhHHH-HHHHHHHHHhheeec
Q psy5074 12 VSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDR----LGRRFLLLTSEITM-AFCQLLLVAYFVFKN 85 (204)
Q Consensus 12 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~~~~~~~~-~i~~~~~~~~~~~~~ 85 (204)
...-..|.|.++++.|.+.+. +..-...-+.+++.+++.|..+|| +||||..+...... .+..+++.+......
T Consensus 48 wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~ 127 (498)
T KOG0637|consen 48 WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGL 127 (498)
T ss_pred HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhH
Confidence 344567888888999998765 555566667788899999999996 89998777554443 444444444433221
Q ss_pred CCCCC--C-CccH---HHHHHHHHHHHHHHhcCccchhhhhccccchhhhHh-HhHHHHHHHHHHHHHHHHHhH
Q psy5074 86 QGYDM--Q-DYSW---IPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLW-SSSLLMCYSWSCLFLVSKVFM 152 (204)
Q Consensus 86 ~~~~~--~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~-~~~~~~~~~~~~~~~~~~~~~ 152 (204)
.-.+. . .... ..+....+.........+ -.-++..|+...+.|.+ +.+....+..+|+.++-...+
T Consensus 128 ~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qg-p~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 128 LLGDNERKPVKPRAIVLFILGFWLLDVANNTLQG-PCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HhcCCcccccchHHHHHHHHHhHHHHhhhhhhhh-hHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 11100 1 1111 112222233333333333 34578889887777776 888888877777766554443
No 254
>KOG3626|consensus
Probab=96.83 E-value=0.11 Score=43.95 Aligned_cols=70 Identities=13% Similarity=0.101 Sum_probs=46.9
Q ss_pred HHHHHHhhChhHHHHhHHHHHHh-hCCCCCh-hHHH-HHHHHHHHHHHHHHHHhhhhcC--chHHHHHhhHHHHH
Q psy5074 3 LMTFQRFSGVSALIYYTVDIFRN-AGTRIAP-STAS-IIVGAVQVVVSLLSSLLIDRLG--RRFLLLTSEITMAF 72 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~-~~~~~~~~~~~~~~g~l~d~~g--rr~~~~~~~~~~~i 72 (204)
+....+...+.....|+|.+++. +|.+.+. ..++ .+...+..+|.+++|++..|+. -|....+..+...+
T Consensus 399 l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l 473 (735)
T KOG3626|consen 399 LASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVL 473 (735)
T ss_pred HHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHH
Confidence 44556667777888999999987 7888754 4444 4444456689999999999864 34444444333333
No 255
>KOG2816|consensus
Probab=96.77 E-value=0.029 Score=45.16 Aligned_cols=119 Identities=13% Similarity=0.072 Sum_probs=87.8
Q ss_pred hCCCCCh-hHHHHHHHHHHHHHHHHHH-HhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHH
Q psy5074 26 AGTRIAP-STASIIVGAVQVVVSLLSS-LLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCT 103 (204)
Q Consensus 26 ~g~~~~~-~~~~~~~~~~~~~~~~~~g-~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (204)
++.+.++ .......+....+++++.. .+...+|-|+....+.....+.....++.. ..|........
T Consensus 272 f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~-----------~~w~~~~~~v~ 340 (463)
T KOG2816|consen 272 FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT-----------ETWMMFAAGVV 340 (463)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc-----------cchhhhHHHHH
Confidence 4677666 6677777777888888776 778889999988888888888887777762 33443332222
Q ss_pred HHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHh
Q psy5074 104 IVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT 157 (204)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (204)
........|...+..+-..++++||+..++......+.+.++|.+.+.+...
T Consensus 341 --~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 341 --VALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred --HHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 2222334566678888899999999999999999999999999998877543
No 256
>KOG3574|consensus
Probab=96.71 E-value=0.034 Score=43.35 Aligned_cols=143 Identities=15% Similarity=0.056 Sum_probs=67.2
Q ss_pred HHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhh-----hcCchHHHHHh-hHHHHHHHHHH
Q psy5074 5 TFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLID-----RLGRRFLLLTS-EITMAFCQLLL 77 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d-----~~grr~~~~~~-~~~~~i~~~~~ 77 (204)
+..|...+. ...-.|.+++.-|.+-+. ...+.... -.--.+++..+.| |+||||..++- ..+.+......
T Consensus 40 YllQGiP~G-L~~~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllL 116 (510)
T KOG3574|consen 40 YLLQGIPLG-LIGAIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLL 116 (510)
T ss_pred HHHcCCchh-HhhhhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHH
Confidence 334444433 333788888876766543 33222211 1234566777778 99999976653 33334433333
Q ss_pred HHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHh
Q psy5074 78 VAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVF 151 (204)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~ 151 (204)
+......-..+ +...........++...+....-......+.-.+..+++-+-+..-.....+.|.+.+..++
T Consensus 117 s~~v~~~~g~n-g~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 117 SYLVDRGLGGN-GGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred hhCCCcccccC-CCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 33322211101 01112222211222222222222323334555666777777666555555555655555443
No 257
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=96.69 E-value=0.12 Score=42.11 Aligned_cols=115 Identities=15% Similarity=0.115 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhe--eecCCCC--------C--CCccHH-------HHHHHH
Q psy5074 42 VQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFV--FKNQGYD--------M--QDYSWI-------PIFSVC 102 (204)
Q Consensus 42 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~--------~--~~~~~~-------~~~~~~ 102 (204)
..++...+..+++||++|++++-+..........+.++... .+-.+++ . ..-.+. ......
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 34556677889999999999887766666665555554321 1111111 0 000000 001111
Q ss_pred HHHHHHH-hcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH
Q psy5074 103 TIVAIFR-IGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID 156 (204)
Q Consensus 103 ~~~~~~~-~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 156 (204)
+..-..+ ....-+.|.+++|+++.++-.+-.++....++++..++.....++.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 11223568999999999999999999999999999998888877766
No 258
>KOG1237|consensus
Probab=96.57 E-value=0.13 Score=42.73 Aligned_cols=163 Identities=15% Similarity=0.081 Sum_probs=95.6
Q ss_pred HHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhh-cCchHHHHHhhHHHHHHHHHHHHhheeecCCCC----
Q psy5074 16 IYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDR-LGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYD---- 89 (204)
Q Consensus 16 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---- 89 (204)
.....++..+++.+... ...............+.+++++|. .||-+.+.++..+..++..++..........+.
T Consensus 58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~ 137 (571)
T KOG1237|consen 58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF 137 (571)
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence 34444555556666532 333344444566788899999997 588888888888887776665544333321110
Q ss_pred -------CCCccHHH-HHHHHHHHHH-HHhcCccchhhhhccccc----hhhhH--hHhHHHHHHHHHHHHHHHHHhHHH
Q psy5074 90 -------MQDYSWIP-IFSVCTIVAI-FRIGIGPIPWFMMAEIIP----LEAKL--WSSSLLMCYSWSCLFLVSKVFMDL 154 (204)
Q Consensus 90 -------~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~e~~p----~~~R~--~~~~~~~~~~~~~~~~~~~~~~~l 154 (204)
........ +....+.... ...+.-|....+-.|-++ .+.+. .-+.+.+...+.|..++..+..+.
T Consensus 138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyi 217 (571)
T KOG1237|consen 138 KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYI 217 (571)
T ss_pred CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 01111111 1111111111 122233445567777776 33333 566667777788888888888898
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHH
Q psy5074 155 IDTVGSAATYGLLGLICTLGAVFV 178 (204)
Q Consensus 155 ~~~~g~~~~~~~~~~~~~i~~~~~ 178 (204)
.+..+|...|.+..+...++.++.
T Consensus 218 q~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 218 QDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred hhcccceeeccHHHHHHHHHHHHH
Confidence 888999888877777666665543
No 259
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=96.45 E-value=0.051 Score=43.81 Aligned_cols=40 Identities=18% Similarity=0.051 Sum_probs=22.9
Q ss_pred chhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHH
Q psy5074 115 IPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDL 154 (204)
Q Consensus 115 ~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l 154 (204)
....++-.+..+++++.|..-.....+.|-+++-.++-.+
T Consensus 138 AVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 138 AVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLAL 177 (544)
T ss_pred eeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhh
Confidence 3334555667788787765555555555555555555444
No 260
>KOG2615|consensus
Probab=96.30 E-value=0.042 Score=42.84 Aligned_cols=121 Identities=11% Similarity=-0.025 Sum_probs=70.8
Q ss_pred HhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcC--chHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHH
Q psy5074 24 RNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLG--RRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFS 100 (204)
Q Consensus 24 ~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g--rr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (204)
+.+|++..+ +.+....++...+.+.......||.. -+-.+..+...+.-..+..... ..+......
T Consensus 290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~-----------~~~~~l~~~ 358 (451)
T KOG2615|consen 290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA-----------RTPVVLYLG 358 (451)
T ss_pred CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc-----------ccchhhhHH
Confidence 346777644 44444455555555555555556654 3334444443333333333322 223333333
Q ss_pred HHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH
Q psy5074 101 VCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID 156 (204)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 156 (204)
..+..+.... ..+....+.....|.+.||+.+|+....+.++-+++|.+.|.+..
T Consensus 359 s~l~sf~~A~-~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 359 STLKSFSTAS-VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred HHHHHHHHHH-hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 3333333332 233445678889999999999999999999999999999876643
No 261
>KOG4686|consensus
Probab=96.06 E-value=0.00074 Score=50.31 Aligned_cols=117 Identities=15% Similarity=0.016 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhh-cCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhc
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDR-LGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIG 111 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (204)
.+..++++...++-++++|++.|| +|-|..-++-+....++.++.+.-... ..-|.......+++.+...
T Consensus 82 tLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~--------~aFw~M~~GRF~FGIGgES- 152 (459)
T KOG4686|consen 82 TLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGIS--------HAFWTMLAGRFLFGIGGES- 152 (459)
T ss_pred eeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHH--------HHHHHHHhhheeeccCchh-
Confidence 566778888899999999999997 677765555555555555544422110 1233434433433333221
Q ss_pred CccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhh
Q psy5074 112 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV 158 (204)
Q Consensus 112 ~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 158 (204)
....-..|..-+|..|+-+.++|+.....++|+.+--.+.+++.+..
T Consensus 153 lAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~ 199 (459)
T KOG4686|consen 153 LAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTM 199 (459)
T ss_pred hhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence 22234467888899999999999999999999876555566665554
No 262
>KOG4332|consensus
Probab=95.69 E-value=0.044 Score=40.87 Aligned_cols=51 Identities=18% Similarity=0.096 Sum_probs=31.0
Q ss_pred HhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHH
Q psy5074 24 RNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQ 74 (204)
Q Consensus 24 ~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~ 74 (204)
+.+|+...+ ...........++...+.|-++||-|||+.-+.-++...+++
T Consensus 65 stYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC 116 (454)
T KOG4332|consen 65 STYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC 116 (454)
T ss_pred hhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH
Confidence 334555433 444444444556667778899999999996554444444443
No 263
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=95.38 E-value=0.19 Score=39.66 Aligned_cols=131 Identities=15% Similarity=0.193 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCcc
Q psy5074 35 ASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGP 114 (204)
Q Consensus 35 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (204)
......+..++..+.+.++.+|+.-+.-.......+.++.+..++. +..+..+....+ ...+.+.+-
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~-----------~~v~~~l~Gv~l--as~ssg~GE 130 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS-----------PSVWVRLLGVVL--ASLSSGLGE 130 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec-----------cchhHHHHHHHH--HhhhhhhhH
Confidence 4444556677888889999998764444444555555555555443 123333333333 333333444
Q ss_pred chhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc--hhHHHHHHHHHHHHHHHHHhhccc
Q psy5074 115 IPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG--SAATYGLLGLICTLGAVFVYTRVP 183 (204)
Q Consensus 115 ~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~i~~~~~~~~~~ 183 (204)
+...-.+..+|+. ..+-.......++.+++..+..+.+ .| .+..+.....+.++..+..++.+|
T Consensus 131 ~tfL~lt~~y~~~----~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~ 196 (402)
T PF02487_consen 131 VTFLSLTHFYGKS----SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLP 196 (402)
T ss_pred HHHHHHHHhcCcc----ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4433334455542 2232333334455666665554444 44 455666666665544444444444
No 264
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=95.24 E-value=0.005 Score=50.53 Aligned_cols=154 Identities=10% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHhhChhHHHHhHHHHHHh-hCCCCCh-hHH-HHHHHHHHHHHHHHHHHhhhhcC--chHHHHHhhHHHHHHHHH--
Q psy5074 4 MTFQRFSGVSALIYYTVDIFRN-AGTRIAP-STA-SIIVGAVQVVVSLLSSLLIDRLG--RRFLLLTSEITMAFCQLL-- 76 (204)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~-~~~~~~~~~~~~~~~g~l~d~~g--rr~~~~~~~~~~~i~~~~-- 76 (204)
....+......+..|+|.++|. ++.+.+. ... ..+...+..+|.+++|++..|+. .|+.+....+...+..+.
T Consensus 313 a~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~ 392 (539)
T PF03137_consen 313 AGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYS 392 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667788899999887 6777654 333 34444467799999999999874 444444333333333322
Q ss_pred -HHH-----------hheee-------cCC----------------CC----CC-Ccc-HHHHHHHHHHHHHHHhcCccc
Q psy5074 77 -LVA-----------YFVFK-------NQG----------------YD----MQ-DYS-WIPIFSVCTIVAIFRIGIGPI 115 (204)
Q Consensus 77 -~~~-----------~~~~~-------~~~----------------~~----~~-~~~-~~~~~~~~~~~~~~~~~~~~~ 115 (204)
..+ ...++ ..+ .+ .. ... ...++...+..........|.
T Consensus 393 ~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~ 472 (539)
T PF03137_consen 393 PLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPS 472 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccch
Confidence 111 01110 000 00 00 111 112222222222223333333
Q ss_pred hhhhhccccchhhhHhHhHHHHHHHHH-HHHHHHHHhHHHHHhh
Q psy5074 116 PWFMMAEIIPLEAKLWSSSLLMCYSWS-CLFLVSKVFMDLIDTV 158 (204)
Q Consensus 116 ~~~~~~e~~p~~~R~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~ 158 (204)
. ...-...|+++|+.+.|+.....++ |.+-+|.++|.+.|..
T Consensus 473 ~-~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 473 T-LITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp --------------------------------------------
T ss_pred h-eeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 3 3444678999999999999887776 5567999999998864
No 265
>PRK03612 spermidine synthase; Provisional
Probab=94.61 E-value=2.2 Score=35.26 Aligned_cols=47 Identities=17% Similarity=0.141 Sum_probs=31.3
Q ss_pred HhHhHHHHHHHHHHHHHHHHHhHHHHH-hhchhHHHHHHHHHHHHHHH
Q psy5074 130 LWSSSLLMCYSWSCLFLVSKVFMDLID-TVGSAATYGLLGLICTLGAV 176 (204)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~~~~~~~~~~~~~i~~~ 176 (204)
+...|-.+..+.+|+.+|+.+.+.+.- ..|......+.+.+.++..+
T Consensus 144 g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 144 GHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred hhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 456778888888999999988877654 56654444455554444443
No 266
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=94.05 E-value=2.7 Score=34.17 Aligned_cols=115 Identities=14% Similarity=0.025 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhee--ecCCCC---------CCC-c---------cHHHHHH
Q psy5074 42 VQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVF--KNQGYD---------MQD-Y---------SWIPIFS 100 (204)
Q Consensus 42 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~---------~~~-~---------~~~~~~~ 100 (204)
+.++..++..++.+++.|++++-+.+.....+.++.++.... +-.+++ +.+ . .|.....
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 456777888899999999998877777777766666643321 111111 001 0 1222222
Q ss_pred HHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH
Q psy5074 101 VCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID 156 (204)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 156 (204)
....-.-......-+.|..++|++..++-.+-.++.+..++++..++..+..++..
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22211111222233678899999999999999999999999998888888777665
No 267
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=91.95 E-value=1.5 Score=35.71 Aligned_cols=134 Identities=13% Similarity=0.141 Sum_probs=76.4
Q ss_pred HHHHHHhhChhHHHHhHHHHHHhhCCCCC-h-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhh--HHHHHHHHHHH
Q psy5074 3 LMTFQRFSGVSALIYYTVDIFRNAGTRIA-P-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSE--ITMAFCQLLLV 78 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~--~~~~i~~~~~~ 78 (204)
++.....+|++-+.+|...+-++..-+.+ - +..-.+..+.+.+.++..|++-.++.|-..+.++. ++.+...+++.
T Consensus 269 lWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~ 348 (511)
T TIGR00806 269 LWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMS 348 (511)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhh
Confidence 34556677777777887777666533222 2 45556666777788888998865553322333332 22223333333
Q ss_pred HhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHH
Q psy5074 79 AYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVS 148 (204)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~ 148 (204)
.. ...|.......++...+.+.. ++...-+++....+.-|...|+.....-+...+.+
T Consensus 349 ~t-----------~~Iw~~Y~~yvlf~~~y~fli-tia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT 406 (511)
T TIGR00806 349 QS-----------HDIWVLYVTYVLFRGIYQFLV-PIATFQIASSLSKELCALVFGINTFVATALKTIIT 406 (511)
T ss_pred cc-----------cchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccceEEEEecHHHHHHHHHHheE
Confidence 22 355666666667777766543 34445555556666667777777666555444433
No 268
>KOG3810|consensus
Probab=88.39 E-value=2.8 Score=32.76 Aligned_cols=103 Identities=11% Similarity=-0.112 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhcc
Q psy5074 43 QVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAE 122 (204)
Q Consensus 43 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 122 (204)
..+.-++.-.+.|...-|++++.-.+....+..+..+... .+..-++=..++.. .......++|+=+
T Consensus 55 YLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~s-----------V~~mQvlE~FyG~~--tAaEIAYysYIYs 121 (433)
T KOG3810|consen 55 YLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPS-----------VKAMQVLEFFYGPA--TAAEIAYYSYIYS 121 (433)
T ss_pred HHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCC-----------chheeeehhhcChH--HHHHHhhhheeee
Confidence 4455566667889988888887766666666666555422 11111111111111 1112244567777
Q ss_pred ccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhh
Q psy5074 123 IIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV 158 (204)
Q Consensus 123 ~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 158 (204)
..+++++.++.+...+..-.|.+.+......+.+..
T Consensus 122 ~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~ 157 (433)
T KOG3810|consen 122 KVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLE 157 (433)
T ss_pred ecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhc
Confidence 789999999999998887777777776666665543
No 269
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=86.86 E-value=11 Score=30.14 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH
Q psy5074 95 WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID 156 (204)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 156 (204)
|..+.....-+...+..+. ..+..+.|-.|+++|-.+++........|..++..+.-.+..
T Consensus 336 ~ivf~lif~eGLlGGa~YV-NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 336 WIVFVLIFYEGLLGGASYV-NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHHHHHHHHhhhHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333333333333333333 334556677889999999999988888887777766655443
No 270
>KOG2325|consensus
Probab=86.84 E-value=0.6 Score=37.88 Aligned_cols=59 Identities=5% Similarity=-0.085 Sum_probs=46.5
Q ss_pred hhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHHH
Q psy5074 116 PWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTLG 174 (204)
Q Consensus 116 ~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~ 174 (204)
..+.-+|+..++.+++..++....+..+..++|.......+..|.++...+.+...++.
T Consensus 409 ~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~ 467 (488)
T KOG2325|consen 409 LDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVV 467 (488)
T ss_pred HHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999998888888888876655444443333
No 271
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=86.28 E-value=16 Score=29.54 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHH
Q psy5074 38 IVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLL 76 (204)
Q Consensus 38 ~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~ 76 (204)
...+..++..+....+..|+..|.-+..+.+...+..+.
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~ 91 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVIL 91 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHH
Confidence 344444555555556666666544444454444333333
No 272
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=85.77 E-value=17 Score=29.21 Aligned_cols=125 Identities=13% Similarity=0.069 Sum_probs=67.4
Q ss_pred HHHHHHhhChhHHHHhHHHHHHhhCCCCC-h---hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhh--HHHHHHHHH
Q psy5074 3 LMTFQRFSGVSALIYYTVDIFRNAGTRIA-P---STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSE--ITMAFCQLL 76 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~---~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~--~~~~i~~~~ 76 (204)
++.....+|.+-+.+|...+-++..-+.+ . +..-....+.+.++++..|++-.++.+-.-+.++. .+.+.+.++
T Consensus 254 lWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~l 333 (412)
T PF01770_consen 254 LWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFL 333 (412)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777888777777622221 1 45666677777788888898866666544433333 333333344
Q ss_pred HHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHH
Q psy5074 77 LVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCY 139 (204)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~ 139 (204)
+... ...|.......++...+.+.. ++...-++.....+.-|...|+....
T Consensus 334 m~~t-----------~~Iwv~Y~~yIif~~~y~fli-TiA~~qIA~~l~~e~yaLVFGiNtf~ 384 (412)
T PF01770_consen 334 MSFT-----------GNIWVCYAGYIIFRSLYMFLI-TIASFQIAKNLSEERYALVFGINTFV 384 (412)
T ss_pred HHHh-----------hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccceeeeeeeHHHH
Confidence 4433 244555555555555555422 23333333334444444455444433
No 273
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.64 E-value=6.4 Score=24.84 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhhhhc-CchHHHHHhhHHHHHH
Q psy5074 39 VGAVQVVVSLLSSLLIDRL-GRRFLLLTSEITMAFC 73 (204)
Q Consensus 39 ~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~i~ 73 (204)
-.+.+++.....||+.||| |.+++-++.+.+...+
T Consensus 51 efIsGilVGa~iG~llD~~agTsPwglIv~lllGf~ 86 (116)
T COG5336 51 EFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFG 86 (116)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 3444555556668999985 7777665544444333
No 274
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=81.41 E-value=28 Score=28.85 Aligned_cols=40 Identities=18% Similarity=-0.117 Sum_probs=31.1
Q ss_pred hhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHh
Q psy5074 118 FMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT 157 (204)
Q Consensus 118 ~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (204)
+.-+.+..|..=|+-+.+.+...|+|+-.-..+.-++.|.
T Consensus 428 AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 428 AFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 5667778899999999999999999976655555555554
No 275
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=80.34 E-value=12 Score=23.66 Aligned_cols=34 Identities=21% Similarity=0.105 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhh
Q psy5074 34 TASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSE 67 (204)
Q Consensus 34 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~ 67 (204)
.......++..++..+.+.+.|+.|.|..+.+..
T Consensus 91 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (141)
T TIGR00880 91 LMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLA 124 (141)
T ss_pred HHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHH
Confidence 4445555666666666777777666665544433
No 276
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=80.09 E-value=6.3 Score=26.73 Aligned_cols=31 Identities=6% Similarity=-0.271 Sum_probs=22.4
Q ss_pred cchhhhhccccchhhhHhHhHHHHHHHHHHH
Q psy5074 114 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCL 144 (204)
Q Consensus 114 ~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~ 144 (204)
.+.|.+.+-...+++.|+..|+-.+-.+.+-
T Consensus 113 GisYGilSaSWD~~r~GSllG~~e~~~N~~r 143 (153)
T PF11947_consen 113 GISYGILSASWDPEREGSLLGWEEFKRNWGR 143 (153)
T ss_pred hhhhhhcccccCCCCCCCcccHHHHHHhHHH
Confidence 3556666777778888998888877666654
No 277
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=73.41 E-value=9.5 Score=24.08 Aligned_cols=37 Identities=11% Similarity=-0.102 Sum_probs=24.4
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q psy5074 153 DLIDTVGSAATYGLLGLICTLGAVFVYTRVPETKNKS 189 (204)
Q Consensus 153 ~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~ 189 (204)
...+..+|+.++++...++++.+.+.+.+.||++-++
T Consensus 52 ~~~d~e~we~~~f~~~~~~~v~~~~~~~y~PD~~i~~ 88 (105)
T PF10183_consen 52 EKRDWEGWELPFFFGFSGSLVFGGVFLAYKPDTSIQT 88 (105)
T ss_pred CcchHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 3446677888887766666666555556679886544
No 278
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.13 E-value=13 Score=23.51 Aligned_cols=53 Identities=13% Similarity=0.016 Sum_probs=34.3
Q ss_pred cchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhch--hHHHHHHHHHHHHHHH
Q psy5074 124 IPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS--AATYGLLGLICTLGAV 176 (204)
Q Consensus 124 ~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~--~~~~~~~~~~~~i~~~ 176 (204)
-.++.++.+.++-...-.+++.+.....+|+.+++-- .|..+++..+.+.+.+
T Consensus 35 ~a~s~k~~~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~ 89 (116)
T COG5336 35 SAESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGV 89 (116)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3456778888888777788888888888999887531 2333444444444433
No 279
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=68.86 E-value=28 Score=22.34 Aligned_cols=42 Identities=10% Similarity=0.064 Sum_probs=25.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHH
Q psy5074 31 APSTASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAF 72 (204)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i 72 (204)
++........+...++.+++|.++-|..++|-++.+.....+
T Consensus 35 ~e~~~~~~~~~i~~ls~~~GG~~a~~~~~~kG~l~G~~~Gl~ 76 (116)
T PF12670_consen 35 SESILPWLVVIIYILSVFIGGFYAGRKAGSKGWLHGLLVGLL 76 (116)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 344555556666777888888887776555555555444433
No 280
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=68.59 E-value=47 Score=24.80 Aligned_cols=48 Identities=8% Similarity=0.015 Sum_probs=29.4
Q ss_pred ccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhch
Q psy5074 113 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS 160 (204)
Q Consensus 113 ~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 160 (204)
+....+.+.+-+|++.|-++.-+.-....+.-.+......++.+.+.|
T Consensus 34 N~iviai~~~~Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l~~~ 81 (254)
T COG0861 34 NAIVIAILASKLPPKQRKKALFIGLAGALVLRIILLASISWLLTLTQP 81 (254)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344557788889998888776555444444444444555566665443
No 281
>KOG3574|consensus
Probab=65.68 E-value=19 Score=28.89 Aligned_cols=42 Identities=19% Similarity=-0.106 Sum_probs=34.4
Q ss_pred hhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhh
Q psy5074 117 WFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV 158 (204)
Q Consensus 117 ~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 158 (204)
.+..+++.|+..-|+-+++.+...++|+---..+..++.+..
T Consensus 391 maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l 432 (510)
T KOG3574|consen 391 MAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL 432 (510)
T ss_pred HHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence 357788999999999999999999999776666777776653
No 282
>KOG3880|consensus
Probab=65.34 E-value=6.8 Score=30.26 Aligned_cols=129 Identities=13% Similarity=0.160 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhc--CchHHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCcc
Q psy5074 37 IIVGAVQVVVSLLSSLLIDRL--GRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGP 114 (204)
Q Consensus 37 ~~~~~~~~~~~~~~g~l~d~~--grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (204)
..-.+...+..+.+....||+ |.|..+ .....+.+..+.++. .+.+..+.. ......+.+.+-
T Consensus 69 LaDilPsL~iKl~~Pff~~rfpf~~Ri~~--~v~~sa~s~~lVafs-----------~s~~~sL~G--V~~aSissGlGE 133 (409)
T KOG3880|consen 69 LADILPSLAIKLTAPFFIHRFPFGFRIAL--VVLLSALSFFLVAFS-----------NSVPMSLLG--VVFASISSGLGE 133 (409)
T ss_pred hhhhhHHHHHHHhchhhhhhcccchHHHH--HHHHHhcceEEEEec-----------cchhHHHhh--hhhhhhcCCcce
Confidence 334455666777778888875 555443 222222222222222 122232322 222333444555
Q ss_pred chhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH--hhchhHHHHHHHHHHHHHHHHHhhcccC
Q psy5074 115 IPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID--TVGSAATYGLLGLICTLGAVFVYTRVPE 184 (204)
Q Consensus 115 ~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~g~~~~~~~~~~~~~i~~~~~~~~~~e 184 (204)
+.+.-.+..+|+..-+ ++.+..+ .++.+|..-+..+-+ ....+...++...+.++.+...++.+++
T Consensus 134 iTFL~lss~Y~~~~i~---~WSSGTG-gAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~ 201 (409)
T KOG3880|consen 134 ITFLALSSRYPSIVIA---GWSSGTG-GAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKS 201 (409)
T ss_pred eehhhhhccCCCceec---cccCCCC-cchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCC
Confidence 5555445545543222 2222211 123344433333333 3445666777777666665555554543
No 283
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=65.17 E-value=77 Score=26.09 Aligned_cols=55 Identities=9% Similarity=-0.043 Sum_probs=36.3
Q ss_pred hhccccch-hhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHH
Q psy5074 119 MMAEIIPL-EAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTL 173 (204)
Q Consensus 119 ~~~e~~p~-~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i 173 (204)
.+.|.+|. +.|+.-+|-.+...+....+.....+++....||.....+...+.++
T Consensus 290 ~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 290 KLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 55666554 56777777776666666655555568999999998665555444444
No 284
>KOG4830|consensus
Probab=62.68 E-value=19 Score=27.19 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=33.6
Q ss_pred HHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHH---------HhhhhcCchHH
Q psy5074 15 LIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSS---------LLIDRLGRRFL 62 (204)
Q Consensus 15 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g---------~l~d~~grr~~ 62 (204)
...|+-.++.+.|.+++. ...+.+..+...+..++.| +-.||+|||+.
T Consensus 36 WFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~ 93 (412)
T KOG4830|consen 36 WFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS 93 (412)
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence 334455556777888755 7777777777777777765 34689999873
No 285
>KOG4332|consensus
Probab=61.89 E-value=71 Score=24.54 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCch--HHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHh
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGRR--FLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRI 110 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~grr--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (204)
+.+........++|+-+..++..|-..| +.+.+..........+.......... ..+.....+..+.+-.+.+.
T Consensus 285 GfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~----kes~~~s~i~F~~~E~cvGl 360 (454)
T KOG4332|consen 285 GFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPS----KESPSESLIGFCLFEACVGL 360 (454)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCC----cCCchHHHHHHHHHHHHHhh
Confidence 5566666667777777777666654333 45556655555544443333221111 12333335555555566665
Q ss_pred cCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH--hhchhHHHHHHHHHHHHHHHH
Q psy5074 111 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID--TVGSAATYGLLGLICTLGAVF 177 (204)
Q Consensus 111 ~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~g~~~~~~~~~~~~~i~~~~ 177 (204)
.+ |....+-++..|++.|++.+-+...--+....++- ...-.+ ..+-|..|.++.+...+..+.
T Consensus 361 fw-PSimkmRsqyIPEearstimNfFRvPLnifvClvL--ynlh~~~~p~~tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 361 FW-PSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVL--YNLHVDAFPTTTRNMFGICSAFLFVASIL 426 (454)
T ss_pred cc-hHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhh--eecccccCccccchhhhhhHHHHHHHHHH
Confidence 44 45556778889999999877665433333222211 111112 133445666666665555443
No 286
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=59.07 E-value=43 Score=21.18 Aligned_cols=45 Identities=18% Similarity=0.120 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHH
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLL 77 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~ 77 (204)
+-....+.-..++.++++++..|+....+.=.++..++.++...+
T Consensus 57 GRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI 101 (107)
T PF02694_consen 57 GRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAII 101 (107)
T ss_pred hhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe
Confidence 566677777788999999999999887776666666666655443
No 287
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=57.78 E-value=54 Score=21.87 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=17.9
Q ss_pred hccccchhhhHhHhHHHHHHHHHH
Q psy5074 120 MAEIIPLEAKLWSSSLLMCYSWSC 143 (204)
Q Consensus 120 ~~e~~p~~~R~~~~~~~~~~~~~~ 143 (204)
..|++|++.|....+..+......
T Consensus 60 Lkdi~P~~~R~~i~~~~~~~~~~~ 83 (137)
T PF04281_consen 60 LKDIFPPSVRNWISSTVSTTSSAV 83 (137)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHH
Confidence 579999999998877766554433
No 288
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=57.74 E-value=50 Score=22.15 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=17.3
Q ss_pred hccccchhhhHhHhHHHHHHHHH
Q psy5074 120 MAEIIPLEAKLWSSSLLMCYSWS 142 (204)
Q Consensus 120 ~~e~~p~~~R~~~~~~~~~~~~~ 142 (204)
..|++|+..|....+..+.....
T Consensus 58 LkDm~Pp~~R~~i~~~~s~t~s~ 80 (145)
T TIGR00986 58 LKDIVPPTTRGWIYHKYSTTTNF 80 (145)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHH
Confidence 57999999998877766555443
No 289
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=55.82 E-value=16 Score=27.36 Aligned_cols=54 Identities=7% Similarity=-0.142 Sum_probs=28.2
Q ss_pred hhHhHhHHHHHHHHHHHHH--HHHHhH---HHHHhhchhHHHHHHHHHHHHHHHHHhhc
Q psy5074 128 AKLWSSSLLMCYSWSCLFL--VSKVFM---DLIDTVGSAATYGLLGLICTLGAVFVYTR 181 (204)
Q Consensus 128 ~R~~~~~~~~~~~~~~~~~--~~~~~~---~l~~~~g~~~~~~~~~~~~~i~~~~~~~~ 181 (204)
+|+.-..+.....++|+.+ .|++.+ .......|+..+.+.+.+.++-+++..++
T Consensus 3 ~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 3 KKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred ccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444445566555 344443 11122348877777777766665555443
No 290
>KOG2601|consensus
Probab=55.81 E-value=1.1e+02 Score=24.77 Aligned_cols=141 Identities=16% Similarity=0.103 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHH----HHHHHHHHhheeecCCCCCCCccHHHHHHHH--HHHHHH
Q psy5074 35 ASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMA----FCQLLLVAYFVFKNQGYDMQDYSWIPIFSVC--TIVAIF 108 (204)
Q Consensus 35 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 108 (204)
...+-+....+...+.|...|+..|+|++.......- ++..+........+ .. ....++...+... ..+...
T Consensus 68 yglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~-~~-~~t~pv~t~~lvLa~~i~aI~ 145 (503)
T KOG2601|consen 68 YGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKD-LK-SATSPVFTVCLVLANLIAAIA 145 (503)
T ss_pred HHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecc-hh-cccccHHHHHHHHHHHHHHHH
Confidence 3444445556666777888899999997765544332 22222211111110 00 0122333222211 111111
Q ss_pred HhcCc--cc----hhh-hhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHHHHHHHHH
Q psy5074 109 RIGIG--PI----PWF-MMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTLGAVF 177 (204)
Q Consensus 109 ~~~~~--~~----~~~-~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~ 177 (204)
..... .+ -|. .++|=-++..-....+.....-.....+.|.+.+.+.+..+.+..-..+++...+....
T Consensus 146 ~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~vsm~~ 221 (503)
T KOG2601|consen 146 VLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALVSMWV 221 (503)
T ss_pred HHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHHHHHH
Confidence 11110 00 111 22343344445555566666667778888998888888777766556666666664433
No 291
>KOG3810|consensus
Probab=53.13 E-value=1.2e+02 Score=24.32 Aligned_cols=162 Identities=15% Similarity=0.138 Sum_probs=88.3
Q ss_pred HHHHHHhhChhHHHHhHHHHHHhhCCCCCh----hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhH--HHHHHHHH
Q psy5074 3 LMTFQRFSGVSALIYYTVDIFRNAGTRIAP----STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEI--TMAFCQLL 76 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~--~~~i~~~~ 76 (204)
++.....+|++-+.+|...+=++.. +++. +..-.+..+.+.++.+..|.+--++.|+.-++++.. ..+-+.+.
T Consensus 241 lWwAl~scg~~QV~nY~Q~LW~~~~-~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~ 319 (433)
T KOG3810|consen 241 LWWALASCGYYQVTNYTQILWKEVA-PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFI 319 (433)
T ss_pred HHHHHhhchhHHHHHHHHHHHHhhC-CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhh
Confidence 3455566777777777766666654 3222 344455666778888889998766666643333333 22222223
Q ss_pred HHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH
Q psy5074 77 LVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID 156 (204)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 156 (204)
+... ...|...+...++...+.... +++..-+++....|.-|...|+.....-+...+.+.+. .+
T Consensus 320 m~~t-----------~~Iw~~Ya~yvlfr~~y~l~i-tiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iV---vd 384 (433)
T KOG3810|consen 320 MAQT-----------QHIWVCYAGYVLFRVIYQLTI-TIATFQIARNLSSELFGLVFGINTFVALILQSILTLIV---VD 384 (433)
T ss_pred hhcc-----------cceehhhhhHHHHHhhHhhhh-hHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEEE---Ec
Confidence 3222 245566666666666666543 35545556666677777777766555444333332221 12
Q ss_pred hhc-----------hhHHHHHHHHHHHHHHHHHhh
Q psy5074 157 TVG-----------SAATYGLLGLICTLGAVFVYT 180 (204)
Q Consensus 157 ~~g-----------~~~~~~~~~~~~~i~~~~~~~ 180 (204)
.-| +..-|.+.+.+.++.....+.
T Consensus 385 ~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~ 419 (433)
T KOG3810|consen 385 DRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYL 419 (433)
T ss_pred ccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHH
Confidence 111 112456667776666555444
No 292
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=50.96 E-value=1.3e+02 Score=24.39 Aligned_cols=57 Identities=9% Similarity=0.012 Sum_probs=35.0
Q ss_pred ccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHH
Q psy5074 93 YSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKV 150 (204)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~ 150 (204)
+.+..++...+++...|. .......+..+..++++|-.+..+....-.+|-..|..+
T Consensus 371 ~d~~~~~~~~l~gltnGy-~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGY-LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred ccHHHHHHHHHHHHhhhH-HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333 233455678888888999888887777766666666544
No 293
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=49.99 E-value=33 Score=21.21 Aligned_cols=25 Identities=40% Similarity=0.480 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCch
Q psy5074 36 SIIVGAVQVVVSLLSSLLIDRLGRR 60 (204)
Q Consensus 36 ~~~~~~~~~~~~~~~g~l~d~~grr 60 (204)
.........+.+++.|.+.||..||
T Consensus 81 ~~~~~~~~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 81 DWITFAVFLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3344455566778888888888776
No 294
>KOG0637|consensus
Probab=49.35 E-value=43 Score=27.46 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCchHHHH
Q psy5074 34 TASIIVGAVQVVVSLLSSLLIDRLGRRFLLL 64 (204)
Q Consensus 34 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~ 64 (204)
+-..+..+...+.+...-+++||+|-|+.+.
T Consensus 336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~ 366 (498)
T KOG0637|consen 336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYW 366 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcceEEe
Confidence 3455666667778888889999999444333
No 295
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=48.71 E-value=55 Score=23.09 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchH
Q psy5074 38 IVGAVQVVVSLLSSLLIDRLGRRF 61 (204)
Q Consensus 38 ~~~~~~~~~~~~~g~l~d~~grr~ 61 (204)
-+-++..+++.+.|++.||..+|+
T Consensus 90 GyL~gfi~aa~l~G~l~~k~~~~~ 113 (184)
T COG1268 90 GYLIGFIIAAFLIGLLAEKIRKRN 113 (184)
T ss_pred hHHHHHHHHHHHHHHHHHhhhccc
Confidence 344556788889999999988633
No 296
>PF12832 MFS_1_like: MFS_1 like family
Probab=47.97 E-value=56 Score=19.13 Aligned_cols=35 Identities=17% Similarity=0.070 Sum_probs=26.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHH
Q psy5074 131 WSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYG 165 (204)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~ 165 (204)
.-.|+......+...+++.+.+.+.|..+.+....
T Consensus 35 ~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l 69 (77)
T PF12832_consen 35 SQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVIL 69 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHH
Confidence 34566667777888899999999999988765443
No 297
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=47.38 E-value=86 Score=21.14 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=29.6
Q ss_pred hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHH
Q psy5074 26 AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLT 65 (204)
Q Consensus 26 ~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~ 65 (204)
.|+++.. .....+.++.-.++-+++.+++|+.++-..+.+
T Consensus 67 iGi~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~ 107 (150)
T COG3086 67 LGIEEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSELIVI 107 (150)
T ss_pred EccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3566544 556677888888899999999999888765543
No 298
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=46.99 E-value=60 Score=24.25 Aligned_cols=29 Identities=17% Similarity=-0.134 Sum_probs=15.9
Q ss_pred ccchhhhHhHhHHHHHHHHHHHHHHHHHh
Q psy5074 123 IIPLEAKLWSSSLLMCYSWSCLFLVSKVF 151 (204)
Q Consensus 123 ~~p~~~R~~~~~~~~~~~~~~~~~~~~~~ 151 (204)
..-+-.|..+.++.....+....+..+..
T Consensus 71 ~~vpii~~iGLglg~liW~s~n~l~Gw~~ 99 (254)
T PF07857_consen 71 LVVPIIKTIGLGLGMLIWGSVNCLTGWAS 99 (254)
T ss_pred eehhHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666655555444443
No 299
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=46.87 E-value=1e+02 Score=21.72 Aligned_cols=40 Identities=10% Similarity=-0.076 Sum_probs=23.3
Q ss_pred hhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHh
Q psy5074 118 FMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT 157 (204)
Q Consensus 118 ~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (204)
+...+-.|+++|.++.-+......+.-.+......++.+.
T Consensus 19 ~~~~~~lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~ 58 (183)
T PF03741_consen 19 AMIFRKLPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSI 58 (183)
T ss_pred HHHHhCCCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455568887777766555444444444455555566555
No 300
>PRK02237 hypothetical protein; Provisional
Probab=45.95 E-value=77 Score=20.16 Aligned_cols=45 Identities=16% Similarity=0.041 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHH
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLL 77 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~ 77 (204)
+-....+....++.++++++..|+...-+.=.++..++.++..++
T Consensus 59 GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 59 GRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred hhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh
Confidence 556666777788888999999998876666566666665555443
No 301
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=45.73 E-value=1.3e+02 Score=22.69 Aligned_cols=25 Identities=12% Similarity=0.011 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhhhh-cCchHHH
Q psy5074 39 VGAVQVVVSLLSSLLIDR-LGRRFLL 63 (204)
Q Consensus 39 ~~~~~~~~~~~~g~l~d~-~grr~~~ 63 (204)
.-.+..+|.+..|..... +.||+.+
T Consensus 150 fv~g~~~G~~~ig~~nkt~~kRk~fi 175 (267)
T PF07672_consen 150 FVAGYFLGPFTIGLWNKTNYKRKPFI 175 (267)
T ss_pred HHHHHhhhceeeccchhhhhhhhhHH
Confidence 333344555555666543 4555543
No 302
>KOG1479|consensus
Probab=45.49 E-value=1.6e+02 Score=23.76 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=20.0
Q ss_pred HHHHhHHHHHHhh-CCCCCh---hHHHHHHHHHHHHHHHHHHHhhhh
Q psy5074 14 ALIYYTVDIFRNA-GTRIAP---STASIIVGAVQVVVSLLSSLLIDR 56 (204)
Q Consensus 14 ~~~~~~~~~~~~~-g~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~ 56 (204)
.+..-.+++.+++ +.+.+. ..++....+..++....-.++.-|
T Consensus 36 ~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~ 82 (406)
T KOG1479|consen 36 MFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTR 82 (406)
T ss_pred hhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555553 222211 233333444445555555666666
No 303
>COG2119 Predicted membrane protein [Function unknown]
Probab=40.45 E-value=1.3e+02 Score=21.27 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHH
Q psy5074 38 IVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQ 74 (204)
Q Consensus 38 ~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~ 74 (204)
...++..++...+.++++|+..|++..++.++..+..
T Consensus 142 g~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fa 178 (190)
T COG2119 142 GMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 3445566777788889999999998877665555544
No 304
>KOG4473|consensus
Probab=40.22 E-value=1e+02 Score=22.39 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=29.0
Q ss_pred chhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHH
Q psy5074 125 PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAAT 163 (204)
Q Consensus 125 p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 163 (204)
|.+.|.+-.++........+.+.|.+...+....+.+..
T Consensus 158 p~~~~p~qaA~asa~afslGg~vPLl~~~fi~~~~~~~v 196 (247)
T KOG4473|consen 158 PAENRPLQAAAASALAFSLGGIVPLLPAAFVKDYKVRIV 196 (247)
T ss_pred CCCCchHHHHHHHHHHHHhccHHhhhHHHhhhhhhhhhh
Confidence 566777777777777777778888887777777776543
No 305
>COG1972 NupC Nucleoside permease [Nucleotide transport and metabolism]
Probab=38.92 E-value=1.8e+02 Score=23.30 Aligned_cols=67 Identities=13% Similarity=0.013 Sum_probs=30.2
Q ss_pred hhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHHHH-HHH-HHHHHhhcccCCCCCC
Q psy5074 119 MMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLI-CTL-GAVFVYTRVPETKNKS 189 (204)
Q Consensus 119 ~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~-~~i-~~~~~~~~~~e~~~~~ 189 (204)
.+.+..++-.|.+...+.. ....+.-++.+.+|.. .|...-+.+.+.. ... +.+..-...|||...+
T Consensus 153 ~vk~~l~~mt~selftv~~--~gmasVsgsilg~Y~~--mgvp~~yllaAs~m~~p~gli~Akii~P~t~~~~ 221 (404)
T COG1972 153 VVKPYLGKMSRSELFTVMA--SGMASVSGSILGGYAS--MGVPPEYLLAASFMNAPGGLLFAKLINPYTEDEQ 221 (404)
T ss_pred hhHHhhhhccHhHHHHHHH--hhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHhcchHHHHHHhcCCCCCCcc
Confidence 3445556655665555442 2334444555555543 2322223332222 222 2333334578876544
No 306
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=38.91 E-value=1.3e+02 Score=23.68 Aligned_cols=18 Identities=17% Similarity=0.431 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhhhhc
Q psy5074 40 GAVQVVVSLLSSLLIDRL 57 (204)
Q Consensus 40 ~~~~~~~~~~~g~l~d~~ 57 (204)
.+..++.....|++..|.
T Consensus 5 ~i~~i~~ii~~G~~~~~~ 22 (385)
T PF03547_consen 5 AILPIFLIILLGYLLGRF 22 (385)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334445555566666654
No 307
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=37.56 E-value=89 Score=22.67 Aligned_cols=39 Identities=13% Similarity=0.051 Sum_probs=22.3
Q ss_pred hhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH
Q psy5074 118 FMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID 156 (204)
Q Consensus 118 ~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 156 (204)
+...+-.|+++|.++.-+......+.-.+......++.+
T Consensus 16 a~~~~~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll~ 54 (215)
T TIGR03716 16 AVMVKHLPEKQRKKALFYGLIGAYVFRFIALFLASFLIK 54 (215)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455788777777655544444444444455555555
No 308
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=37.22 E-value=2.4e+02 Score=23.26 Aligned_cols=12 Identities=33% Similarity=0.213 Sum_probs=6.7
Q ss_pred HhhhhcCchHHH
Q psy5074 52 LLIDRLGRRFLL 63 (204)
Q Consensus 52 ~l~d~~grr~~~ 63 (204)
.+..|.++|+..
T Consensus 106 ~l~k~l~~~~~~ 117 (465)
T PF03606_consen 106 LLIKPLKGKKNP 117 (465)
T ss_pred HHHHHhcCCcch
Confidence 456666655433
No 309
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=34.97 E-value=12 Score=28.64 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=2.1
Q ss_pred cchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHH
Q psy5074 114 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSK 149 (204)
Q Consensus 114 ~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~ 149 (204)
.....+.++..++++|-.+-.+....-..|-..|..
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ 302 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSV 302 (309)
T ss_dssp HHHH--------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567888888888877777666665555555544
No 310
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=34.96 E-value=1.7e+02 Score=20.95 Aligned_cols=60 Identities=10% Similarity=0.082 Sum_probs=27.8
Q ss_pred cchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchh-HHHHHHHHHHHHH
Q psy5074 114 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSA-ATYGLLGLICTLG 174 (204)
Q Consensus 114 ~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~~~~~~~~~i~ 174 (204)
|+...+..+.- +++|-+..--......+...+..+...++.+.+|-. ..|-+.+.+.+..
T Consensus 22 p~f~~lt~~~~-~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ 82 (203)
T PF01914_consen 22 PIFLSLTKGMS-PKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFL 82 (203)
T ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 44444444444 444444333333333333444455566667777753 3444444443333
No 311
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=34.74 E-value=3.2e+02 Score=24.03 Aligned_cols=31 Identities=19% Similarity=0.154 Sum_probs=19.6
Q ss_pred HHHhhhh----cCchHHHHHhhHHHHHHHHHHHHh
Q psy5074 50 SSLLIDR----LGRRFLLLTSEITMAFCQLLLVAY 80 (204)
Q Consensus 50 ~g~l~d~----~grr~~~~~~~~~~~i~~~~~~~~ 80 (204)
.+-+.|. -||.+-++++..+..++.+.....
T Consensus 43 a~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll 77 (701)
T TIGR01667 43 AAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLL 77 (701)
T ss_pred hhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445564 355677777777777777766654
No 312
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=33.70 E-value=3.3e+02 Score=23.96 Aligned_cols=25 Identities=24% Similarity=0.487 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhc
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRL 57 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~ 57 (204)
...+....+.+++++++.-.+.||.
T Consensus 160 ~~~sl~l~i~~l~~p~~~q~viD~V 184 (709)
T COG2274 160 LLASLLLQLLALATPLFSQIVIDKV 184 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667777888888889999995
No 313
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=33.64 E-value=59 Score=17.06 Aligned_cols=8 Identities=13% Similarity=0.521 Sum_probs=3.1
Q ss_pred HhhcccCC
Q psy5074 178 VYTRVPET 185 (204)
Q Consensus 178 ~~~~~~e~ 185 (204)
.+.+.|+.
T Consensus 27 ~w~~~~~~ 34 (49)
T PF05545_consen 27 IWAYRPRN 34 (49)
T ss_pred HHHHcccc
Confidence 33334443
No 314
>KOG2881|consensus
Probab=32.58 E-value=2.2e+02 Score=21.53 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=7.7
Q ss_pred cCCCC-CCHHHHHHHHhc
Q psy5074 183 PETKN-KSFEAIQAELAM 199 (204)
Q Consensus 183 ~e~~~-~~~~~~~~~~~~ 199 (204)
+|+++ ++.+|.+++.++
T Consensus 155 ~~~~~~eE~eEVe~el~~ 172 (294)
T KOG2881|consen 155 SPSEGQEELEEVEAELAK 172 (294)
T ss_pred CCccchhhHHHHHHHHHh
Confidence 34443 344555555444
No 315
>PRK10263 DNA translocase FtsK; Provisional
Probab=31.96 E-value=4.7e+02 Score=25.09 Aligned_cols=22 Identities=18% Similarity=0.045 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcCc
Q psy5074 38 IVGAVQVVVSLLSSLLIDRLGR 59 (204)
Q Consensus 38 ~~~~~~~~~~~~~g~l~d~~gr 59 (204)
+.+.++.+|..+...+..-+|-
T Consensus 60 V~Nl~GiVGA~LAD~L~~LFGl 81 (1355)
T PRK10263 60 IHNLGGMPGAWLADTLFFIFGV 81 (1355)
T ss_pred cccccchHHHHHHHHHHHHHhH
Confidence 3455566666666666656663
No 316
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=31.53 E-value=1.1e+02 Score=17.87 Aligned_cols=27 Identities=22% Similarity=0.080 Sum_probs=19.5
Q ss_pred hhhcCchHHHHHhhHHHHHHHHHHHHh
Q psy5074 54 IDRLGRRFLLLTSEITMAFCQLLLVAY 80 (204)
Q Consensus 54 ~d~~grr~~~~~~~~~~~i~~~~~~~~ 80 (204)
-|+-.|++.+.+...+-..++++....
T Consensus 11 ~d~~~R~r~Y~i~M~~Ri~~fvlA~~~ 37 (73)
T PF11298_consen 11 QDQRRRRRRYLIMMGIRIPCFVLAAVV 37 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466678888887777777777776655
No 317
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=31.13 E-value=1.1e+02 Score=24.63 Aligned_cols=43 Identities=14% Similarity=0.029 Sum_probs=25.3
Q ss_pred HHHHhHHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHHHhhhh
Q psy5074 14 ALIYYTVDIFRNAGTRIAPSTASIIVGAVQVVVSLLSSLLIDR 56 (204)
Q Consensus 14 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 56 (204)
.-..+.|.+-+++|++...........++-+.++++++.++++
T Consensus 139 TAaA~g~~f~e~~G~~~a~~lgla~AT~GLv~g~liGgpi~~~ 181 (398)
T TIGR00210 139 TGAAWSPVFYDNYGFRNATEIAIACATFGLVFGGIIGGPVAKF 181 (398)
T ss_pred HHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666654557887654555555555556666666666554
No 318
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=30.96 E-value=1.4e+02 Score=18.74 Aligned_cols=26 Identities=8% Similarity=0.196 Sum_probs=12.9
Q ss_pred HHHHHHHhhh-hcCchHHHHHhhHHHH
Q psy5074 46 VSLLSSLLID-RLGRRFLLLTSEITMA 71 (204)
Q Consensus 46 ~~~~~g~l~d-~~grr~~~~~~~~~~~ 71 (204)
.....|...| +++-++.+.+.+++.+
T Consensus 58 ~G~~lG~WLD~~~~t~~~~tl~~lllG 84 (100)
T TIGR02230 58 LGVAVGIWLDRHYPSPFSWTLTMLIVG 84 (100)
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHH
Confidence 3333444445 5777665544443333
No 319
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=30.64 E-value=1.7e+02 Score=19.73 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhhhhcCchH
Q psy5074 39 VGAVQVVVSLLSSLLIDRLGRRF 61 (204)
Q Consensus 39 ~~~~~~~~~~~~g~l~d~~grr~ 61 (204)
+-++..+.+.+.|++.||..|++
T Consensus 62 yl~gf~~~a~i~g~~~~~~~~~~ 84 (148)
T PF02632_consen 62 YLLGFPLAALIIGLLAERLKRSR 84 (148)
T ss_pred HHHHHHHHHHHHHHHHHhccccc
Confidence 44455677788888888887763
No 320
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=30.24 E-value=1.2e+02 Score=17.66 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=11.0
Q ss_pred HHHHHhhcccCCCCCCHHHHHH
Q psy5074 174 GAVFVYTRVPETKNKSFEAIQA 195 (204)
Q Consensus 174 ~~~~~~~~~~e~~~~~~~~~~~ 195 (204)
+.++..+...+.++|+.+|.+.
T Consensus 24 ~~~wi~~Ra~~~~DKT~~eRQa 45 (72)
T PF13268_consen 24 SGIWILWRALRKKDKTAKERQA 45 (72)
T ss_pred HHHHHHHHHHHcCCCcHHHHHH
Confidence 3333333334556677666554
No 321
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=28.85 E-value=1.1e+02 Score=16.97 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=12.7
Q ss_pred chhHHHHHHHHHHHHHHHH
Q psy5074 159 GSAATYGLLGLICTLGAVF 177 (204)
Q Consensus 159 g~~~~~~~~~~~~~i~~~~ 177 (204)
|||...++.+++.++++.+
T Consensus 4 g~r~~~~~ggfVg~iG~a~ 22 (58)
T PF15061_consen 4 GWRYALFVGGFVGLIGAAL 22 (58)
T ss_pred cccchhhHHHHHHHHHHHH
Confidence 5777766777777766544
No 322
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=26.67 E-value=4.3e+02 Score=23.00 Aligned_cols=33 Identities=12% Similarity=-0.108 Sum_probs=26.1
Q ss_pred cccchhhhHhHhHHHHHHHHHHHHHHHHHhHHH
Q psy5074 122 EIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDL 154 (204)
Q Consensus 122 e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l 154 (204)
+-.|++.|+.+.++......+|..+...+...-
T Consensus 592 ~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~ 624 (654)
T TIGR00926 592 SQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFE 624 (654)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 347999999999999888888888877666543
No 323
>KOG2601|consensus
Probab=26.57 E-value=48 Score=26.62 Aligned_cols=34 Identities=12% Similarity=-0.004 Sum_probs=26.8
Q ss_pred ccchhhhhccccchhhhHhHhHHHHHHHHHHHHH
Q psy5074 113 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFL 146 (204)
Q Consensus 113 ~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~ 146 (204)
.+...-...|..|+++|....|+.+.........
T Consensus 404 DlAVtqimQe~VpEseR~vv~gvqnsL~~~ldll 437 (503)
T KOG2601|consen 404 DLAVTQIMQETVPESERCVVFGVQNSLNSALDLL 437 (503)
T ss_pred cHHHHHHHHHhcchhhhhhhHhHHHHHHHHHHHH
Confidence 3344467899999999999999999887766543
No 324
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=26.01 E-value=1.1e+02 Score=16.06 Aligned_cols=36 Identities=17% Similarity=0.033 Sum_probs=13.8
Q ss_pred HHHHHHHHHhHHHHHhhchhHHHHHHHHHHHHHHHH
Q psy5074 142 SCLFLVSKVFMDLIDTVGSAATYGLLGLICTLGAVF 177 (204)
Q Consensus 142 ~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~ 177 (204)
+|+.++.++.+.+-...++.+.-.+.+.+..+..+.
T Consensus 6 iGa~vGg~l~~~lg~~~~~~~~~~i~aviGAiill~ 41 (48)
T PF04226_consen 6 IGAFVGGWLFGLLGINGGGSWGSFIVAVIGAIILLF 41 (48)
T ss_pred HHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHH
Confidence 344444444443332222223333444444443333
No 325
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=25.97 E-value=1.8e+02 Score=23.11 Aligned_cols=37 Identities=16% Similarity=0.050 Sum_probs=16.6
Q ss_pred HhHHHHHHhh-CCCCChhHHHHHHHHHHHHHHHHHHHhh
Q psy5074 17 YYTVDIFRNA-GTRIAPSTASIIVGAVQVVVSLLSSLLI 54 (204)
Q Consensus 17 ~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~l~ 54 (204)
.+.|.+ ++. |++...........++-+.+.++++.+.
T Consensus 142 a~g~~f-e~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~ 179 (368)
T PF03616_consen 142 AFGPTF-EELYGWEGATSVGMAAATFGLVVGGLIGGPIA 179 (368)
T ss_pred HHHHHH-HHhcChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 554 8775443333333333334444444443
No 326
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=25.64 E-value=2.4e+02 Score=19.69 Aligned_cols=30 Identities=10% Similarity=0.304 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhhhcCchHHHHHhhHHHHH
Q psy5074 43 QVVVSLLSSLLIDRLGRRFLLLTSEITMAF 72 (204)
Q Consensus 43 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~i 72 (204)
..+++..+....+|..+|.-++.+....++
T Consensus 110 ~l~~~~~~~~~~~~~~~R~~~i~ag~~v~l 139 (194)
T PF07698_consen 110 SLVSGIVAIFSVRRIRSRSDIIKAGLLVGL 139 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666777666655544433333
No 327
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=24.87 E-value=80 Score=19.65 Aligned_cols=6 Identities=17% Similarity=-0.058 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy5074 191 EAIQAE 196 (204)
Q Consensus 191 ~~~~~~ 196 (204)
++.++.
T Consensus 35 K~~~~m 40 (97)
T COG1862 35 KEHQEL 40 (97)
T ss_pred HHHHHH
Confidence 333333
No 328
>PF11283 DUF3084: Protein of unknown function (DUF3084); InterPro: IPR021435 This bacterial family of proteins has no known function.
Probab=24.50 E-value=1.7e+02 Score=17.48 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=8.5
Q ss_pred HHHHhhhhcCchHHHH
Q psy5074 49 LSSLLIDRLGRRFLLL 64 (204)
Q Consensus 49 ~~g~l~d~~grr~~~~ 64 (204)
++-.+..|.|||++-+
T Consensus 19 ~GD~iG~kvGKkrlsl 34 (79)
T PF11283_consen 19 LGDRIGSKVGKKRLSL 34 (79)
T ss_pred HHHHHHHHHhHHHhhh
Confidence 3344445567776543
No 329
>PF04647 AgrB: Accessory gene regulator B; InterPro: IPR006741 The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein [] involved in the proteolytic processing of AgrD, and may have both proteolytic and transporter activities, facilitating the export of the processed AgrD peptide []. ; GO: 0016020 membrane
Probab=23.81 E-value=2.6e+02 Score=19.40 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=9.6
Q ss_pred HHHHHHHHhhccc-CCCCCCH
Q psy5074 171 CTLGAVFVYTRVP-ETKNKSF 190 (204)
Q Consensus 171 ~~i~~~~~~~~~~-e~~~~~~ 190 (204)
..++.+..+.+-| |+++++.
T Consensus 108 ~~~~~~~i~~~aPv~~~~kpl 128 (185)
T PF04647_consen 108 FIISFIIIIIYAPVDTPNKPL 128 (185)
T ss_pred HHHHHHHHHHhcccccccCcC
Confidence 3444444444455 4555544
No 330
>KOG1237|consensus
Probab=23.53 E-value=2.3e+02 Score=24.09 Aligned_cols=37 Identities=14% Similarity=-0.014 Sum_probs=29.8
Q ss_pred cccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhh
Q psy5074 122 EIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV 158 (204)
Q Consensus 122 e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 158 (204)
+-+|++.|+.+.++......+|..+...+........
T Consensus 485 ~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t 521 (571)
T KOG1237|consen 485 SQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFST 521 (571)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4479999999999999988888888888776554443
No 331
>PF15192 TMEM213: TMEM213 family
Probab=23.18 E-value=1.5e+02 Score=17.36 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=8.9
Q ss_pred hHHHHHhhchhHHH
Q psy5074 151 FMDLIDTVGSAATY 164 (204)
Q Consensus 151 ~~~l~~~~g~~~~~ 164 (204)
+||+....||..-|
T Consensus 45 yGWIAAAVGWSLwF 58 (82)
T PF15192_consen 45 YGWIAAAVGWSLWF 58 (82)
T ss_pred hhHHHHHHhHHHHH
Confidence 56777777775433
No 332
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=22.82 E-value=93 Score=20.96 Aligned_cols=19 Identities=11% Similarity=0.132 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhcccCCC
Q psy5074 168 GLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 168 ~~~~~i~~~~~~~~~~e~~ 186 (204)
+...++.+++....+||+.
T Consensus 102 Ag~~lv~filmvVLiPEpg 120 (144)
T PF01350_consen 102 AGVLLVFFILMVVLIPEPG 120 (144)
T ss_pred HHHHHHHHHHHHhcccCCC
Confidence 4444455555555689873
No 333
>COG4708 Predicted membrane protein [Function unknown]
Probab=22.16 E-value=2.6e+02 Score=18.94 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCchH
Q psy5074 36 SIIVGAVQVVVSLLSSLLIDRLGRRF 61 (204)
Q Consensus 36 ~~~~~~~~~~~~~~~g~l~d~~grr~ 61 (204)
.....++..+...+++.+.||.++|.
T Consensus 140 w~tta~gEfvsl~vg~~~m~kl~kr~ 165 (169)
T COG4708 140 WFTTALGEFVSLYVGALIMDKLGKRI 165 (169)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhh
Confidence 34456677888888888999998885
No 334
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=21.82 E-value=5.6e+02 Score=22.62 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=19.0
Q ss_pred HHHhhhh----cCchHHHHHhhHHHHHHHHHHHHh
Q psy5074 50 SSLLIDR----LGRRFLLLTSEITMAFCQLLLVAY 80 (204)
Q Consensus 50 ~g~l~d~----~grr~~~~~~~~~~~i~~~~~~~~ 80 (204)
.+-++|. -||.+-++++.++..++.+.....
T Consensus 43 a~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll 77 (704)
T TIGR01666 43 AAALVDLDDRLTGRLKNVIFTLICFSIASFSVELL 77 (704)
T ss_pred hhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556664 355666667777777666665544
No 335
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=21.77 E-value=1.8e+02 Score=16.76 Aligned_cols=22 Identities=9% Similarity=0.258 Sum_probs=10.1
Q ss_pred HHHHHHHhhcccCCCCCCHHHH
Q psy5074 172 TLGAVFVYTRVPETKNKSFEAI 193 (204)
Q Consensus 172 ~i~~~~~~~~~~e~~~~~~~~~ 193 (204)
+++..+.++..++.+++-.+++
T Consensus 41 vis~~lS~~ll~~~R~~~~~~i 62 (69)
T PF14012_consen 41 VISMPLSYVLLRRLRDRASADI 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554433333333
No 336
>PF08080 zf-RNPHF: RNPHF zinc finger; InterPro: IPR012996 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc-binding domain (CHHC motif) in RNP H and F. The domain is often associated with IPR000504 from INTERPRO. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WEZ_A 2KG1_A.
Probab=21.61 E-value=31 Score=16.83 Aligned_cols=9 Identities=44% Similarity=0.759 Sum_probs=0.0
Q ss_pred hhhcCchHH
Q psy5074 54 IDRLGRRFL 62 (204)
Q Consensus 54 ~d~~grr~~ 62 (204)
+||+||-..
T Consensus 3 sd~FGRd~~ 11 (36)
T PF08080_consen 3 SDRFGRDLS 11 (36)
T ss_dssp ---------
T ss_pred cchhcchhh
Confidence 577777543
No 337
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=21.39 E-value=31 Score=26.07 Aligned_cols=10 Identities=10% Similarity=0.461 Sum_probs=0.0
Q ss_pred HHhhcccCCC
Q psy5074 177 FVYTRVPETK 186 (204)
Q Consensus 177 ~~~~~~~e~~ 186 (204)
+.|.++.+++
T Consensus 180 LIWlY~H~~~ 189 (381)
T PF05297_consen 180 LIWLYVHDQR 189 (381)
T ss_dssp ----------
T ss_pred HHHHHhcCCC
Confidence 3444455554
No 338
>PF14068 YuiB: Putative membrane protein
Probab=21.38 E-value=1.2e+02 Score=19.07 Aligned_cols=23 Identities=13% Similarity=0.304 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcCch
Q psy5074 38 IVGAVQVVVSLLSSLLIDRLGRR 60 (204)
Q Consensus 38 ~~~~~~~~~~~~~g~l~d~~grr 60 (204)
..-..+.+|++.+|+..+..++|
T Consensus 75 ~il~~Gl~GAi~SG~tIr~LRk~ 97 (102)
T PF14068_consen 75 LILSSGLAGAIVSGITIRTLRKK 97 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556778888999888766554
No 339
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=20.80 E-value=5.1e+02 Score=22.60 Aligned_cols=39 Identities=13% Similarity=0.276 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhhhc-------------CchHHHHHhhHHHHHHHHHHHHh
Q psy5074 42 VQVVVSLLSSLLIDRL-------------GRRFLLLTSEITMAFCQLLLVAY 80 (204)
Q Consensus 42 ~~~~~~~~~g~l~d~~-------------grr~~~~~~~~~~~i~~~~~~~~ 80 (204)
++++..++.+++-+|+ |+|.+.+++.+.+.+..+++.+.
T Consensus 100 gGIi~G~i~a~l~nkf~~~klP~~l~fF~G~rfVpii~~~~~~~~g~i~~~i 151 (648)
T PRK10255 100 AGIITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYV 151 (648)
T ss_pred hhhHHHHHHHHHHHHhccccCCceeeecCCcchhHhHHHHHHHHHHHHHHHh
Confidence 3455555667777775 77878777777776666665543
No 340
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.58 E-value=2.3e+02 Score=18.72 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCchH
Q psy5074 37 IIVGAVQVVVSLLSSLLIDRLGRRF 61 (204)
Q Consensus 37 ~~~~~~~~~~~~~~g~l~d~~grr~ 61 (204)
-.....+++..++.|+++-|++.+.
T Consensus 8 W~~a~igLvvGi~IG~li~Rlt~~~ 32 (138)
T COG3105 8 WEYALIGLVVGIIIGALIARLTNRK 32 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchh
Confidence 3344455556666677777776654
No 341
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=20.58 E-value=1e+02 Score=24.53 Aligned_cols=30 Identities=17% Similarity=0.312 Sum_probs=23.1
Q ss_pred HHhhhhcCchHHHHHhhHHHHHHHHHHHHh
Q psy5074 51 SLLIDRLGRRFLLLTSEITMAFCQLLLVAY 80 (204)
Q Consensus 51 g~l~d~~grr~~~~~~~~~~~i~~~~~~~~ 80 (204)
.++..|+.||+.+++|.+++.+....+...
T Consensus 78 pF~~~r~~~R~~~~~G~~~f~~~l~~lS~f 107 (385)
T PF06898_consen 78 PFFLKRLRRRKGFVAGIVLFLALLYILSSF 107 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCe
Confidence 456788999999998888887777666544
No 342
>smart00793 AgrB Accessory gene regulator B. The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein PUBMED:11195102. AgrB is involved in the proteolyt
Probab=20.57 E-value=3.1e+02 Score=19.19 Aligned_cols=18 Identities=28% Similarity=0.696 Sum_probs=8.7
Q ss_pred HHHHHHHhhccc-CCCCCC
Q psy5074 172 TLGAVFVYTRVP-ETKNKS 189 (204)
Q Consensus 172 ~i~~~~~~~~~~-e~~~~~ 189 (204)
+++.+..+.+-| |+++++
T Consensus 109 i~s~~~i~~~APv~~~~kp 127 (184)
T smart00793 109 LIGLVLIYIYAPADTEKQP 127 (184)
T ss_pred HHHHHHHHhcCCcccccCC
Confidence 334444455555 455554
Done!