Query psy5074
Match_columns 204
No_of_seqs 263 out of 1027
Neff 10.9
Searched_HMMs 29240
Date Fri Aug 16 16:35:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5074.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5074hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.9 3.5E-25 1.2E-29 175.6 19.7 193 3-202 284-483 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.8 4E-19 1.4E-23 139.2 11.8 168 10-186 42-211 (451)
3 2gfp_A EMRD, multidrug resista 99.8 2.1E-19 7.1E-24 137.9 9.7 171 5-187 9-180 (375)
4 3o7q_A L-fucose-proton symport 99.8 1.2E-17 4.2E-22 130.4 17.8 170 5-186 35-235 (438)
5 4aps_A DI-OR tripeptide H+ sym 99.8 1.3E-16 4.4E-21 126.5 19.0 163 6-180 23-195 (491)
6 2xut_A Proton/peptide symporte 99.7 9E-16 3.1E-20 122.6 19.5 164 6-180 22-197 (524)
7 1pw4_A Glycerol-3-phosphate tr 99.7 1.8E-16 6.2E-21 124.1 11.0 167 5-181 261-433 (451)
8 4gc0_A D-xylose-proton symport 99.6 1.1E-14 3.8E-19 115.3 15.4 151 33-185 58-223 (491)
9 2cfq_A Lactose permease; trans 99.6 1.5E-14 5.1E-19 112.7 13.6 161 15-187 239-405 (417)
10 3o7q_A L-fucose-proton symport 99.6 1.8E-13 6.2E-18 106.7 16.9 156 6-176 268-427 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.5 3.8E-13 1.3E-17 106.5 10.6 169 16-188 303-478 (491)
12 2cfq_A Lactose permease; trans 99.3 1.1E-12 3.9E-17 102.0 2.5 167 7-185 18-191 (417)
13 2gfp_A EMRD, multidrug resista 99.0 8.8E-11 3E-15 89.8 1.5 149 5-166 208-361 (375)
14 2xut_A Proton/peptide symporte 98.9 4.8E-10 1.7E-14 89.4 3.7 129 61-192 374-513 (524)
15 2g9p_A Antimicrobial peptide l 79.9 1.1 3.7E-05 18.7 1.5 14 49-62 2-15 (26)
16 1cmk_I CAMP-dependent protein 38.7 5.1 0.00017 17.4 -0.3 10 54-63 9-18 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.94 E-value=3.5e-25 Score=175.63 Aligned_cols=193 Identities=25% Similarity=0.473 Sum_probs=154.6
Q ss_pred HHHHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhh
Q psy5074 3 LMTFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYF 81 (204)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~ 81 (204)
...++++.+.+.+..|.|.+.+..+.+... .....+..+...++.++++++.||+|||+.++.+...+.++...+....
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~ 363 (491)
T 4gc0_A 284 LSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF 363 (491)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHH
Confidence 457788999999999999999988877655 6677778888999999999999999999999998888888777665443
Q ss_pred eeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHH-----
Q psy5074 82 VFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID----- 156 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~----- 156 (204)
... ...+..+........+++.+.+++.+.+.+|++|++.|+++.++.+..+++++.+++.+.+.+.+
T Consensus 364 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~ 436 (491)
T 4gc0_A 364 YTQ-------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV 436 (491)
T ss_dssp HTT-------CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH
T ss_pred hcc-------cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 23344445555556667777888889999999999999999999999999999999888876643
Q ss_pred -hhchhHHHHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhcccC
Q psy5074 157 -TVGSAATYGLLGLICTLGAVFVYTRVPETKNKSFEAIQAELAMGYT 202 (204)
Q Consensus 157 -~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 202 (204)
..++...|+++++++++..++.++++||||+|++||+|+.++++.+
T Consensus 437 ~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 437 AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETK 483 (491)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC----
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCc
Confidence 2445567888999999999888888999999999999988876554
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.80 E-value=4e-19 Score=139.22 Aligned_cols=168 Identities=11% Similarity=-0.073 Sum_probs=132.3
Q ss_pred hChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCC
Q psy5074 10 SGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGY 88 (204)
Q Consensus 10 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (204)
..........|.+.+++ .+..+ ++......++..+++++.|+++||+|||+.++++..+..++.+........ .
T Consensus 42 ~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-~--- 116 (451)
T 1pw4_A 42 LVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-T--- 116 (451)
T ss_dssp HHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH-H---
T ss_pred HHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-c---
Confidence 33344567788888888 77766 888999999999999999999999999999999999999998888772100 0
Q ss_pred CCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc-hhHHHHHH
Q psy5074 89 DMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLL 167 (204)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~~ 167 (204)
++.+..+....+.+.+.+. ..+...++++|.+|+++|+++.++.+....+|..++|.+.+.+.+..+ |++.|++.
T Consensus 117 ---~~~~~l~~~~~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~ 192 (451)
T 1pw4_A 117 ---SSIAVMFVLLFLCGWFQGM-GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMP 192 (451)
T ss_dssp ---SSSSHHHHHHHHHHHHHHH-THHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHH
T ss_pred ---ccHHHHHHHHHHHHHHhhh-ccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1233444444444444443 445667899999999999999999999999999999999999889898 99999988
Q ss_pred HHHHHHHHHHHhhcccCCC
Q psy5074 168 GLICTLGAVFVYTRVPETK 186 (204)
Q Consensus 168 ~~~~~i~~~~~~~~~~e~~ 186 (204)
+++.++..+..++..||++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 193 AFCAILVALFAFAMMRDTP 211 (451)
T ss_dssp HHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHHHHHHHhhccCCH
Confidence 8888777776666677754
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.80 E-value=2.1e-19 Score=137.95 Aligned_cols=171 Identities=16% Similarity=0.037 Sum_probs=135.2
Q ss_pred HHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhee
Q psy5074 5 TFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVF 83 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~ 83 (204)
.+....+........|.+.+++|.+.++ .+......++..+++++.|+++||+|||+.+..+.....++........
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-- 86 (375)
T 2gfp_A 9 VAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS-- 86 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc--
Confidence 3444455566677788888889998876 8888999999999999999999999999999999999988888877652
Q ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHH
Q psy5074 84 KNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAAT 163 (204)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 163 (204)
+.+.......+.+.+.+ ...+....+..|.+|+++|+++.++.+....++..++|.+.+.+.+..+|+..
T Consensus 87 ---------~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 156 (375)
T 2gfp_A 87 ---------SLTVLIAASAMQGMGTG-VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRAC 156 (375)
T ss_dssp ---------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred ---------cHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHH
Confidence 22333333333333333 24456678999999999999999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCC
Q psy5074 164 YGLLGLICTLGAVFVYTRVPETKN 187 (204)
Q Consensus 164 ~~~~~~~~~i~~~~~~~~~~e~~~ 187 (204)
+.+.++..++..+...+..||++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 157 YLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHHHHHHHCcccCC
Confidence 988888877777656666787653
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.78 E-value=1.2e-17 Score=130.37 Aligned_cols=170 Identities=11% Similarity=0.037 Sum_probs=130.0
Q ss_pred HHHHhhChhHHHHhHHHHHHhhCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHH---HHh
Q psy5074 5 TFQRFSGVSALIYYTVDIFRNAGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLL---VAY 80 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~---~~~ 80 (204)
++.............|.+.+++|.+..+ ++......++..++.++.|+++||+|||+.++++..+..++.++. ...
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~ 114 (438)
T 3o7q_A 35 FFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI 114 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc
Confidence 3334444456777888988999999877 889999999999999999999999999999999999999988887 433
Q ss_pred heeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHH-Hhhc
Q psy5074 81 FVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI-DTVG 159 (204)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~g 159 (204)
++.+..+....+.+.+.+. ..+....+++|.+|+++|+++.++.+....+|..+++.+.+.+. +..+
T Consensus 115 -----------~~~~~l~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 115 -----------MNYTLFLVGLFIIAAGLGC-LETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred -----------ccHHHHHHHHHHHHhhHHH-hhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 2334444444444444443 34566789999999999999999999999999999999999988 4433
Q ss_pred -------------------------hhHHHHHHHHHHHHHHHHHhh-cccCCC
Q psy5074 160 -------------------------SAATYGLLGLICTLGAVFVYT-RVPETK 186 (204)
Q Consensus 160 -------------------------~~~~~~~~~~~~~i~~~~~~~-~~~e~~ 186 (204)
|++.|.+.+....+..+..++ ..||++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~ 235 (438)
T 3o7q_A 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQ 235 (438)
T ss_dssp CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCT
T ss_pred cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 888887777666665554443 245543
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.75 E-value=1.3e-16 Score=126.47 Aligned_cols=163 Identities=10% Similarity=0.043 Sum_probs=124.6
Q ss_pred HHHhhChhHHHHhHHHHHHh------hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhh-cCchHHHHHhhHHHHHHHHHH
Q psy5074 6 FQRFSGVSALIYYTVDIFRN------AGTRIAP-STASIIVGAVQVVVSLLSSLLIDR-LGRRFLLLTSEITMAFCQLLL 77 (204)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~------~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~i~~~~~ 77 (204)
+....+.+....+.+.++++ +|.+..+ ++......++..+++++.|+++|| +|||+.+..+..+..++.+..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~ 102 (491)
T 4aps_A 23 MWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVL 102 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 33444555565666666554 6888766 888899999999999999999999 899999999999988888877
Q ss_pred HHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhh--hHhHhHHHHHHHHHHHHHHHHHhHHHH
Q psy5074 78 VAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEA--KLWSSSLLMCYSWSCLFLVSKVFMDLI 155 (204)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--R~~~~~~~~~~~~~~~~~~~~~~~~l~ 155 (204)
... ++.+.......+.+.+.+. ..+....+++|.+|+++ |+++.++.+....+|..++|.+.+.+.
T Consensus 103 ~~~-----------~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 170 (491)
T 4aps_A 103 ALP-----------FGASALFGSIILIIIGTGF-LKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ 170 (491)
T ss_dssp HSC-----------CSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh-----------hhHHHHHHHHHHHHHHHHh-ccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 654 2333444444444444433 34566789999999988 777888888999999999999999999
Q ss_pred HhhchhHHHHHHHHHHHHHHHHHhh
Q psy5074 156 DTVGSAATYGLLGLICTLGAVFVYT 180 (204)
Q Consensus 156 ~~~g~~~~~~~~~~~~~i~~~~~~~ 180 (204)
+..||++.|.+.++..++..+..++
T Consensus 171 ~~~g~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 171 EAAGYHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998877766666555443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.72 E-value=9e-16 Score=122.61 Aligned_cols=164 Identities=15% Similarity=0.082 Sum_probs=123.5
Q ss_pred HHHhhChhHHHHhHHHHHH-hhC------CCCCh-hHHHHHHHHHHHHHHHHHHHhhhhc-CchHHHHHhhHHHHHHHHH
Q psy5074 6 FQRFSGVSALIYYTVDIFR-NAG------TRIAP-STASIIVGAVQVVVSLLSSLLIDRL-GRRFLLLTSEITMAFCQLL 76 (204)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~-~~g------~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~i~~~~ 76 (204)
+....+.+....+.|.+++ ++| .+..+ ++......++..++.++.|+++||+ |||+.+.++..+..++.+.
T Consensus 22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~ 101 (524)
T 2xut_A 22 ACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAF 101 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 3344445556666666554 578 88766 8888889999999999999999999 9999999999888888887
Q ss_pred HHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHH---HHHHHHHHHHHHHHHhHH
Q psy5074 77 LVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSL---LMCYSWSCLFLVSKVFMD 153 (204)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~---~~~~~~~~~~~~~~~~~~ 153 (204)
..... .+.+..+....+.+.+.+ ...+....+++|.+|+++|+++.+. .+....+|..++|.+.+.
T Consensus 102 ~~~~~----------~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~ 170 (524)
T 2xut_A 102 LAIFE----------HSVQGFYTGLFLIALGSG-GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPL 170 (524)
T ss_dssp HHHTS----------SCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTH
T ss_pred HHHhc----------ccHHHHHHHHHHHHHhcc-ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77651 023333333344443333 3456677899999999999876666 888889999999999999
Q ss_pred HHHhhchhHHHHHHHHHHHHHHHHHhh
Q psy5074 154 LIDTVGSAATYGLLGLICTLGAVFVYT 180 (204)
Q Consensus 154 l~~~~g~~~~~~~~~~~~~i~~~~~~~ 180 (204)
+.+..+|++.|.+.++..++..+..++
T Consensus 171 l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 171 LLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 998899999998887776666555444
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.68 E-value=1.8e-16 Score=124.10 Aligned_cols=167 Identities=10% Similarity=0.033 Sum_probs=122.7
Q ss_pred HHHHhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhc--CchHHHHHhhHHHH-HHHHHHHH
Q psy5074 5 TFQRFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRL--GRRFLLLTSEITMA-FCQLLLVA 79 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~~~~~~~-i~~~~~~~ 79 (204)
.+....+.+....+.|.++++ .|.+... ........++.+++.++.+++.||+ |||+.+..+..+.. ++...+..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (451)
T 1pw4_A 261 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM 340 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 444455566778888988887 7888765 7788888899999999999999999 99998887766665 43333322
Q ss_pred hheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHH-HHHHHHHHhHHHHHhh
Q psy5074 80 YFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWS-CLFLVSKVFMDLIDTV 158 (204)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~ 158 (204)
. .+ ...+.......+.+.+.+. ..+....+..|.+|++.|+++.++.+....+ +..++|.+.+.+.+..
T Consensus 341 ~---~~------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 410 (451)
T 1pw4_A 341 N---PA------GNPTVDMICMIVIGFLIYG-PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 410 (451)
T ss_dssp C---CT------TCHHHHHHHHHHHHHHHTH-HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred h---cc------cCHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 00 1223333333333333222 2345567899999999999999999999999 9999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhc
Q psy5074 159 GSAATYGLLGLICTLGAVFVYTR 181 (204)
Q Consensus 159 g~~~~~~~~~~~~~i~~~~~~~~ 181 (204)
|++..+.+.+++.+++.+..++.
T Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 411 GWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888877777665553
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.63 E-value=1.1e-14 Score=115.29 Aligned_cols=151 Identities=13% Similarity=-0.057 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCC-------CCCccHHHHHHHHHHH
Q psy5074 33 STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYD-------MQDYSWIPIFSVCTIV 105 (204)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 105 (204)
++..+...++.++|++++|+++||+|||+.++++.++..++.++.++.......... ..++.+..++...+.+
T Consensus 58 g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G 137 (491)
T 4gc0_A 58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGG 137 (491)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHH
Confidence 355666788899999999999999999999999999999998888753211000000 0012233344444444
Q ss_pred HHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHh--------hchhHHHHHHHHHHHHHHHH
Q psy5074 106 AIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT--------VGSAATYGLLGLICTLGAVF 177 (204)
Q Consensus 106 ~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~g~~~~~~~~~~~~~i~~~~ 177 (204)
.+.+. ..+....+++|..|+++|++..++.+.....+...++.+....... .+|+..+.......++.. .
T Consensus 138 ~g~G~-~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 215 (491)
T 4gc0_A 138 IGVGL-ASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFL-M 215 (491)
T ss_dssp HHHHH-HHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHH-H
T ss_pred HHHHH-HHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhh-h
Confidence 44333 4456778999999999999999999888888877777665554432 235555544444444443 3
Q ss_pred HhhcccCC
Q psy5074 178 VYTRVPET 185 (204)
Q Consensus 178 ~~~~~~e~ 185 (204)
..++.||+
T Consensus 216 ~~~~~peS 223 (491)
T 4gc0_A 216 LLYTVPES 223 (491)
T ss_dssp HGGGSCCC
T ss_pred hhhcCCCC
Confidence 44458886
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.60 E-value=1.5e-14 Score=112.67 Aligned_cols=161 Identities=9% Similarity=0.057 Sum_probs=109.6
Q ss_pred HHHhHHHHHHhh-CCC---CCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhheeecCCCC
Q psy5074 15 LIYYTVDIFRNA-GTR---IAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYD 89 (204)
Q Consensus 15 ~~~~~~~~~~~~-g~~---~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (204)
...+.|.++++. +.+ ... .....+..+...++.++.++++||+|||+.+..+.....+........
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--------- 309 (417)
T 2cfq_A 239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--------- 309 (417)
T ss_dssp HHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 334566665542 211 122 345556667778899999999999999999888777776655444322
Q ss_pred CCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHH-HHHHHHHHHHHHHHhHHHHHhhchhHHHHHHH
Q psy5074 90 MQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLL-MCYSWSCLFLVSKVFMDLIDTVGSAATYGLLG 168 (204)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 168 (204)
...+.......+....... ..+..+.+.+|.+|++.|+++.++. +....+++.++|.+.+.+.+..|+...|.+.+
T Consensus 310 --~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~ 386 (417)
T 2cfq_A 310 --TSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG 386 (417)
T ss_dssp --CSHHHHHHHTTHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence 1222222222222222221 2233467999999999999999995 77788999999999999998888878888888
Q ss_pred HHHHHHHHHHhhcccCCCC
Q psy5074 169 LICTLGAVFVYTRVPETKN 187 (204)
Q Consensus 169 ~~~~i~~~~~~~~~~e~~~ 187 (204)
++.+++.+..++..||++.
T Consensus 387 ~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 387 LVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHHHHHHhhhcCCCc
Confidence 8888777766666776654
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.57 E-value=1.8e-13 Score=106.73 Aligned_cols=156 Identities=12% Similarity=0.049 Sum_probs=113.5
Q ss_pred HHHhhChhHHHHhHHHH-HHhh-CCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHHHhhe
Q psy5074 6 FQRFSGVSALIYYTVDI-FRNA-GTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFV 82 (204)
Q Consensus 6 ~~~~~~~~~~~~~~~~~-~~~~-g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~~~~~ 82 (204)
+...........+.|.+ +++. |.+... ........++..++.++.++++||+|||+.+..+..+..++.+.....
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-- 345 (438)
T 3o7q_A 268 FCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-- 345 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc--
Confidence 33444445667888888 7775 888765 777888889999999999999999999999998888887776665544
Q ss_pred eecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc-hh
Q psy5074 83 FKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SA 161 (204)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~ 161 (204)
+..+ ......+.+.+.+. ..+..+.+..|.+|++ |+++.++.. .+.+++.++|.+.+.+.+..| ++
T Consensus 346 ---------~~~~-~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~ 412 (438)
T 3o7q_A 346 ---------GGHV-GLIALTLCSAFMSI-QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIP 412 (438)
T ss_dssp ---------CHHH-HHHHHHHHHHHHTT-HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSG
T ss_pred ---------CCcH-HHHHHHHHHHHHHH-HHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchH
Confidence 1222 22223333333332 3456778888999977 888888877 677999999999999999998 88
Q ss_pred HHHHHHHHHHHHHHH
Q psy5074 162 ATYGLLGLICTLGAV 176 (204)
Q Consensus 162 ~~~~~~~~~~~i~~~ 176 (204)
..|.+.++..++..+
T Consensus 413 ~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 413 TAELIPALCFAVIFI 427 (438)
T ss_dssp GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 877765554444433
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.46 E-value=3.8e-13 Score=106.51 Aligned_cols=169 Identities=9% Similarity=-0.052 Sum_probs=106.7
Q ss_pred HHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHH-----HhhHHHHHHHHHHHHhheeecCCC
Q psy5074 16 IYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLL-----TSEITMAFCQLLLVAYFVFKNQGY 88 (204)
Q Consensus 16 ~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~ 88 (204)
..+.|.+.++ .+.+... ........+...++.++.+++.||+|||+... .+..+..++...+.........+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
T 4aps_A 303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG 382 (491)
T ss_dssp GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3445555555 4555333 66677778888889999999999999987654 555555555555443321111000
Q ss_pred CCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhchhHHHHHHH
Q psy5074 89 DMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLG 168 (204)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 168 (204)
....+.......+.+.+.+ ...+..+.+..|.+|++.|+++.++.+....++..+++.+.+.+.+ .++...+...+
T Consensus 383 --~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~ 458 (491)
T 4aps_A 383 --KVSPLWLVGSWALVILGEM-LISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFG 458 (491)
T ss_dssp --TCCTHHHHHHHHHHHHHHH-TTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTH
T ss_pred --CccHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 1123333333333333333 3456777899999999999999999999999999999999888755 35556777778
Q ss_pred HHHHHHHHHHhhcccCCCCC
Q psy5074 169 LICTLGAVFVYTRVPETKNK 188 (204)
Q Consensus 169 ~~~~i~~~~~~~~~~e~~~~ 188 (204)
.+.++..+..++..|+.+++
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 459 LGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 87777777776666665543
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.27 E-value=1.1e-12 Score=102.05 Aligned_cols=167 Identities=10% Similarity=-0.016 Sum_probs=96.9
Q ss_pred HHhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHHHHHHHHHHH---Hhh
Q psy5074 7 QRFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLV---AYF 81 (204)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~i~~~~~~---~~~ 81 (204)
..+.+......+.|.++++ .|.+..+ +.......++..++++++|+++||+|||++++++..+..+...... ...
T Consensus 18 ~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 97 (417)
T 2cfq_A 18 FYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP 97 (417)
T ss_dssp HHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555678887765 7988876 8888899999999999999999999999999887766544221111 110
Q ss_pred eeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccch--hhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc
Q psy5074 82 VFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPL--EAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG 159 (204)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 159 (204)
... ..... .........+.... .......+..++ ++|+...+..+....+|..++|.+.+++.+ .+
T Consensus 98 ~~~-------~~~~~---~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~ 165 (417)
T 2cfq_A 98 LLQ-------YNILV---GSIVGGIYLGFCFN-AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-IN 165 (417)
T ss_dssp HHH-------TTCCH---HHHGGGSSTTHHHH-TTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HC
T ss_pred HHH-------HHHHH---HHHHHHHHHHHHHh-hhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hc
Confidence 000 00000 00110000111111 111223333333 345666677777778888899999888876 57
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCC
Q psy5074 160 SAATYGLLGLICTLGAVFVYTRVPET 185 (204)
Q Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~e~ 185 (204)
|+..|++.++..++..+..++..||+
T Consensus 166 ~~~~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 166 NQFVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp SHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCccc
Confidence 88887766555444433333323443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.98 E-value=8.8e-11 Score=89.81 Aligned_cols=149 Identities=11% Similarity=-0.017 Sum_probs=97.5
Q ss_pred HHHHhhChhHHHHhHHHHHHh-hCCCCCh-hHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHhhHH-HHHHHH--HHHH
Q psy5074 5 TFQRFSGVSALIYYTVDIFRN-AGTRIAP-STASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEIT-MAFCQL--LLVA 79 (204)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~-~~i~~~--~~~~ 79 (204)
.+....+......+.|.+.++ .|.+... ........++.+++.++.+++.||++||.. .+... ...+.. ....
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~--~~~~~~~~~~~~~~~~~~ 285 (375)
T 2gfp_A 208 LIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPDW 285 (375)
T ss_dssp HHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHH--HHHHHHHHTSSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Confidence 344445556667777777766 6777655 677777888889999999999999987322 22222 111111 1111
Q ss_pred hheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHHHHHHHHHHHHhHHHHHhhc
Q psy5074 80 YFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG 159 (204)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 159 (204)
... ...+.......+.+.+.+. ..+....+..|..| ++|+++.++.+....++..+++.+.+.+.+..+
T Consensus 286 ~~~---------~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 286 FGV---------MNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp HHH---------HHHHHHHHHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred hcc---------ccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 100 0222233333444444444 45677788999998 889999999999999999999999999888777
Q ss_pred hhHHHHH
Q psy5074 160 SAATYGL 166 (204)
Q Consensus 160 ~~~~~~~ 166 (204)
++..+..
T Consensus 355 ~~~~~~~ 361 (375)
T 2gfp_A 355 GSLGLLM 361 (375)
T ss_dssp HHHHHHH
T ss_pred ccHHHHH
Confidence 7655443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.92 E-value=4.8e-10 Score=89.44 Aligned_cols=129 Identities=6% Similarity=-0.116 Sum_probs=69.7
Q ss_pred HHHHHhhHHHHHHHHHHHHhheeecCCCCCCCccHHHHHHHHHHHHHHHhcCccchhhhhccccchhhhHhHhHHHHHHH
Q psy5074 61 FLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYS 140 (204)
Q Consensus 61 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~ 140 (204)
+.+.++..+..++.+.+........ .+.....+.......+.+.+.+. ..+..+.+..|..|++.|+++.|+.+...
T Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 450 (524)
T 2xut_A 374 RKMGAGIAITGLSWIVVGTIQLMMD--GGSALSIFWQILPYALLTFGEVL-VSATGLEFAYSQAPKAMKGTIMSFWTLSV 450 (524)
T ss_dssp HHHHTHHHHHHHHHHTTTTTTTTTT--TTCCCCSHHHHHHHHHHHHHHHH-HHHHHTTTHHHHCCTTCCTTTHHHHGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCCCcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcHHHHhHHHHHHHHHH
Confidence 3455566666555554433211000 00001233333333333333332 34566788999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHhh--ch---------hHHHHHHHHHHHHHHHHHhhcccCCCCCCHHH
Q psy5074 141 WSCLFLVSKVFMDLIDTV--GS---------AATYGLLGLICTLGAVFVYTRVPETKNKSFEA 192 (204)
Q Consensus 141 ~~~~~~~~~~~~~l~~~~--g~---------~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~ 192 (204)
.+++.+++.+.+.+.+.. +| +..|.+.+.+.++..+..+++.|+.+.++.++
T Consensus 451 ~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (524)
T 2xut_A 451 TVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHYR 513 (524)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence 999999999998876532 12 22366666676766666666566665544433
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=79.93 E-value=1.1 Score=18.74 Aligned_cols=14 Identities=36% Similarity=0.648 Sum_probs=11.2
Q ss_pred HHHHhhhhcCchHH
Q psy5074 49 LSSLLIDRLGRRFL 62 (204)
Q Consensus 49 ~~g~l~d~~grr~~ 62 (204)
+.|.+..|+|||..
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35788999999874
No 16
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=38.67 E-value=5.1 Score=17.42 Aligned_cols=10 Identities=40% Similarity=0.541 Sum_probs=7.5
Q ss_pred hhhcCchHHH
Q psy5074 54 IDRLGRRFLL 63 (204)
Q Consensus 54 ~d~~grr~~~ 63 (204)
+||-|||..+
T Consensus 9 ~~RtGRRNAl 18 (26)
T 1cmk_I 9 SGRTGRRNAI 18 (26)
T ss_pred cCcccccccc
Confidence 5788998753
Done!