RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5074
(204 letters)
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 114 bits (288), Expect = 5e-30
Identities = 64/194 (32%), Positives = 104/194 (53%), Gaps = 2/194 (1%)
Query: 1 MGLMTFQRFSGVSALIYYTVDIFRNAG-TRIAPSTASIIVGAVQVVVSLLSSLLIDRLGR 59
+ L FQ+F+G++A++YY+ IF NAG + SIIVGAV + ++ L+DR GR
Sbjct: 289 VVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGR 348
Query: 60 RFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFM 119
R LLL MA C +L G + + I + +A F +G GP+PW +
Sbjct: 349 RPLLLIGAAGMAICLFVLGILGASFVTG-SSKSSGNVAIVFILLFIAFFAMGWGPVPWVI 407
Query: 120 MAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTLGAVFVY 179
++EI PL + S+ + +W F+V +F +++++G + G + LG +FVY
Sbjct: 408 VSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVY 467
Query: 180 TRVPETKNKSFEAI 193
+PETK ++ E I
Sbjct: 468 FFLPETKGRTLEEI 481
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 99.7 bits (249), Expect = 1e-24
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 5/197 (2%)
Query: 1 MGLMTFQRFSGVSALIYYTVDIFRNAGTRIAPSTASIIVGAVQVVVSLLSSLLIDRLGRR 60
+ L FQ+ +G++A+ YY+ IF G +IIVG V V + ++ L+DR GRR
Sbjct: 258 VMLQIFQQLTGINAIFYYSPTIFETLGLS-DSLLVTIIVGVVNFVFTFIAIFLVDRFGRR 316
Query: 61 FLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMM 120
LLL MA C L+L + + + I + +A F +G GP+PW ++
Sbjct: 317 PLLLLGAAGMAICFLVLGVALLGVAKSKGA---GIVAIVFILLFIAFFALGWGPVPWVIV 373
Query: 121 AEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTLGAVFVYT 180
+E+ PL + + ++ +W FL+ +F + +G + + + L +FV+
Sbjct: 374 SELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIG-GYVFLVFAGLLVLFILFVFF 432
Query: 181 RVPETKNKSFEAIQAEL 197
VPETK ++ E I
Sbjct: 433 FVPETKGRTLEEIDELF 449
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 92.8 bits (231), Expect = 3e-22
Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 14/196 (7%)
Query: 3 LMTFQRFSGVSALIYYTVDIFRNAGTRI-APSTASIIVGAVQVVVSLLSSLLIDRLGRRF 61
L FQ+F G++ ++YY +IF+ G +IIVG + + ++L+ + +D+ GR+
Sbjct: 278 LSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKP 337
Query: 62 LLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMA 121
L + + MA L F + G + + S+ VA F + GP+ W +++
Sbjct: 338 LQIIGALGMAIGMFSLGTAFYTQAPGI-------VALLSMLFYVAAFAMSWGPVCWVLLS 390
Query: 122 EIIPLEAKLWSSSLLMCYSWSCLFLVSKVF--MD----LIDTVGSAATYGLLGLICTLGA 175
EI P + + ++ + W + VS F MD L+ + +Y + G + L A
Sbjct: 391 EIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA 450
Query: 176 VFVYTRVPETKNKSFE 191
+F++ VPETK K+ E
Sbjct: 451 LFMWKFVPETKGKTLE 466
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 32.7 bits (75), Expect = 0.100
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 13/181 (7%)
Query: 1 MGLMTFQRFSGVSALIYYTVDIFRNAG--TRIAPSTASIIVGAVQVVVSLLSSLLIDRLG 58
+ L F G L+ Y + + + G ++ +LL LL DRLG
Sbjct: 180 LALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLG 239
Query: 59 RRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWF 118
RR LLL + +A LLL+A S + ++ P
Sbjct: 240 RRRLLLLIGLLLAALGLLLLALA-----------PSLALLLVALLLLGFGLGFAFPALLT 288
Query: 119 MMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGLICTLGAVFV 178
+ +E+ P EA+ +S L + L + L+DT G + +L + L A+ +
Sbjct: 289 LASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348
Query: 179 Y 179
Sbjct: 349 L 349
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 31.5 bits (72), Expect = 0.31
Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 18/129 (13%)
Query: 1 MGLMTFQRFSGV----SALIYYTVDIFRNAGTRIAPSTASIIVGAVQVVVSLLSSLLIDR 56
+ LM F S ++YY + + + GA ++ +L L+ +
Sbjct: 241 LLLMNLLLFIAFNIRGSIMVYYVTYVL--GDPELFAYLLLLASGAGLLIGLILWPRLVKK 298
Query: 57 LGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGI-GPI 115
G++ L L + +A LLL YF + + V I+A GI P+
Sbjct: 299 FGKKKLFLIGLLLLAVGYLLL--YFT---------PAGSVVLIVVALIIAGVGTGIANPL 347
Query: 116 PWFMMAEII 124
PW M+A+ +
Sbjct: 348 PWAMVADTV 356
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 31.0 bits (71), Expect = 0.37
Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 13/112 (11%)
Query: 13 SALIYYTVDIFRNAGTRIAPSTASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAF 72
L+YY + NAG S +I ++ + L L R G++ L + A
Sbjct: 243 GLLLYYFTYVLGNAG---LFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAI 299
Query: 73 CQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVAIFRIGIGPIPWFMMAEII 124
+LL +F+ S + + I +PW M+A+++
Sbjct: 300 GLVLL--FFL--------PPGSLWLFLVLVVLAGIGLGLATLLPWAMLADVV 341
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 30.4 bits (69), Expect = 0.76
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 13/96 (13%)
Query: 47 SLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYSWIPIFSVCTIVA 106
S + L DR GR+ +LL S + A +L +Y+ +F +V
Sbjct: 144 SFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF----------SPNYTVFLVFR--LLVG 191
Query: 107 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWS 142
+ GI + E +P + + L+ +S
Sbjct: 192 MGIGGIWVQAVVLNTEFLPKKQRAI-VGTLIQVFFS 226
Score = 28.1 bits (63), Expect = 3.6
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 37 IIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVA 79
I G V++ L++ LLIDRLGRR+ + S + LLL+
Sbjct: 362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLF 404
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 28.4 bits (64), Expect = 2.4
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
Query: 35 ASIIVGAVQVVVSLLSSLLIDRLGRRFLLLTSEITMAFCQLLLVAYFVFKNQGYDMQDYS 94
++ + + LS L DR+GRR +L+ + A + L+ + G
Sbjct: 260 VLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLL--MALLDSG-----SF 312
Query: 95 WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSL 135
+ F V + I + GP+ F + E+ P E + +SL
Sbjct: 313 TLFFFLVLGMALIGGMYTGPMGSF-LPELFPTEVRYTGASL 352
>gnl|CDD|237226 PRK12845, PRK12845, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 564
Score = 26.7 bits (59), Expect = 9.8
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 8/51 (15%)
Query: 32 PSTASIIVGAVQVVV---SLLSSLLIDRLGRRFLLLTSEIT--MAFCQLLL 77
P+ A + GA V++ SL SL++D+ GRRF+ +E T M+F Q +L
Sbjct: 328 PAVAPLPGGAPAVMLAERSLPGSLIVDQTGRRFV---NEATDYMSFGQRVL 375
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.141 0.430
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,447,694
Number of extensions: 987767
Number of successful extensions: 1437
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1418
Number of HSP's successfully gapped: 85
Length of query: 204
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 112
Effective length of database: 6,857,034
Effective search space: 767987808
Effective search space used: 767987808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (25.7 bits)