Query psy5075
Match_columns 91
No_of_seqs 109 out of 1071
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 16:36:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5075.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5075hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569|consensus 99.3 1.3E-11 2.7E-16 86.3 6.5 65 26-90 256-321 (485)
2 KOG0254|consensus 98.7 5.7E-08 1.2E-12 68.2 5.7 62 28-90 284-345 (513)
3 PF00083 Sugar_tr: Sugar (and 97.9 2.6E-07 5.6E-12 63.3 -5.2 62 26-88 239-300 (451)
4 PRK10077 xylE D-xylose transpo 92.9 0.72 1.6E-05 31.9 6.8 34 41-74 272-305 (479)
5 KOG2532|consensus 89.6 2.4 5.2E-05 30.3 6.8 66 4-74 219-293 (466)
6 PF15188 CCDC-167: Coiled-coil 89.1 1 2.2E-05 24.9 3.6 46 5-51 35-80 (85)
7 TIGR00879 SP MFS transporter, 86.9 6.9 0.00015 26.5 7.5 38 37-74 281-318 (481)
8 TIGR00887 2A0109 phosphate:H+ 86.3 1.2 2.5E-05 31.5 3.6 46 27-73 273-321 (502)
9 KOG3626|consensus 82.9 9.7 0.00021 29.0 7.1 34 40-73 392-426 (735)
10 COG2814 AraJ Arabinose efflux 79.8 9.4 0.0002 26.9 5.9 58 28-90 204-263 (394)
11 TIGR00894 2A0114euk Na(+)-depe 79.5 15 0.00033 25.5 6.9 29 45-73 266-295 (465)
12 TIGR00895 2A0115 benzoate tran 73.9 21 0.00046 23.6 6.3 22 52-73 262-283 (398)
13 PF04341 DUF485: Protein of un 73.1 13 0.00029 20.4 4.4 33 37-69 13-45 (91)
14 PRK11663 regulatory protein Uh 72.8 9.6 0.00021 26.3 4.5 18 56-73 259-277 (434)
15 TIGR01299 synapt_SV2 synaptic 71.5 12 0.00026 28.5 5.0 41 28-70 435-475 (742)
16 PRK12307 putative sialic acid 71.4 25 0.00053 23.9 6.2 45 27-73 220-264 (426)
17 TIGR00881 2A0104 phosphoglycer 70.9 8.8 0.00019 25.2 3.9 19 55-73 231-250 (379)
18 COG2807 CynX Cyanate permease 69.4 14 0.00029 26.2 4.5 34 40-73 208-241 (395)
19 PRK15075 citrate-proton sympor 67.6 16 0.00034 25.3 4.7 24 50-73 248-272 (434)
20 KOG2504|consensus 65.7 34 0.00074 24.8 6.2 56 29-89 292-348 (509)
21 TIGR00712 glpT glycerol-3-phos 63.6 17 0.00037 25.1 4.2 20 54-73 265-285 (438)
22 TIGR00903 2A0129 major facilit 62.5 34 0.00074 23.3 5.5 42 27-73 184-225 (368)
23 PF03137 OATP: Organic Anion T 61.9 2.6 5.6E-05 30.6 0.0 37 37-73 302-339 (539)
24 PF12832 MFS_1_like: MFS_1 lik 61.7 23 0.00049 18.8 5.0 26 48-73 8-33 (77)
25 PRK11273 glpT sn-glycerol-3-ph 56.1 27 0.00058 24.3 4.2 17 57-73 270-287 (452)
26 COG3162 Predicted membrane pro 50.6 46 0.001 19.0 4.2 47 20-69 7-53 (102)
27 KOG0253|consensus 50.5 23 0.0005 25.6 3.1 35 28-69 316-350 (528)
28 COG2271 UhpC Sugar phosphate p 49.7 51 0.0011 23.8 4.7 15 59-73 271-286 (448)
29 PF13347 MFS_2: MFS/sugar tran 48.3 37 0.00081 23.4 3.9 43 26-69 216-258 (428)
30 TIGR00895 2A0115 benzoate tran 47.9 79 0.0017 20.8 5.6 36 38-73 15-50 (398)
31 TIGR00898 2A0119 cation transp 47.7 96 0.0021 21.7 5.9 21 27-47 315-335 (505)
32 PRK10473 multidrug efflux syst 47.2 72 0.0016 21.5 5.1 34 40-73 3-36 (392)
33 TIGR00896 CynX cyanate transpo 45.3 88 0.0019 20.7 5.3 18 56-73 213-230 (355)
34 TIGR02332 HpaX 4-hydroxyphenyl 44.5 74 0.0016 21.9 4.9 25 46-70 248-272 (412)
35 KOG2533|consensus 43.4 21 0.00046 25.8 2.2 43 26-73 264-307 (495)
36 TIGR00900 2A0121 H+ Antiporter 42.5 94 0.002 20.2 6.5 12 27-38 202-213 (365)
37 TIGR00897 2A0118 polyol permea 41.6 98 0.0021 21.1 5.1 22 52-73 234-255 (402)
38 TIGR00883 2A0106 metabolite-pr 39.8 1.1E+02 0.0023 20.1 6.4 44 27-73 209-253 (394)
39 PRK11663 regulatory protein Uh 38.5 1.1E+02 0.0024 21.1 5.1 37 37-73 20-56 (434)
40 PF05915 DUF872: Eukaryotic pr 38.0 83 0.0018 18.3 4.8 48 37-88 40-87 (115)
41 PRK10504 putative transporter; 35.3 1.5E+02 0.0033 20.5 5.9 36 37-73 8-43 (471)
42 PRK09556 uhpT sugar phosphate 34.2 1.3E+02 0.0029 21.0 5.0 19 55-73 273-292 (467)
43 TIGR00893 2A0114 d-galactonate 33.9 1E+02 0.0022 20.1 4.2 21 53-73 228-249 (399)
44 TIGR00882 2A0105 oligosacchari 33.7 1.5E+02 0.0033 20.0 5.8 14 26-39 206-219 (396)
45 PRK15075 citrate-proton sympor 33.2 1.7E+02 0.0036 20.3 5.9 38 36-73 11-48 (434)
46 PRK09705 cynX putative cyanate 32.4 1.6E+02 0.0036 20.0 5.8 20 54-73 219-238 (393)
47 TIGR00711 efflux_EmrB drug res 30.6 1.8E+02 0.004 20.0 5.6 32 42-73 4-35 (485)
48 TIGR00805 oat sodium-independe 30.3 1.9E+02 0.0041 21.7 5.3 41 28-73 323-364 (633)
49 TIGR00710 efflux_Bcr_CflA drug 28.7 1.8E+02 0.0038 19.2 5.2 24 50-73 15-38 (385)
50 PLN00028 nitrate transmembrane 26.6 2.4E+02 0.0051 20.0 5.2 35 38-73 35-69 (476)
51 PF01306 LacY_symp: LacY proto 26.5 1.3E+02 0.0029 21.4 3.8 11 28-38 213-223 (412)
52 PRK11551 putative 3-hydroxyphe 25.6 2.2E+02 0.0047 19.2 7.4 23 51-73 231-253 (406)
53 PF04531 Phage_holin_1: Bacter 25.6 1.2E+02 0.0027 16.4 4.7 27 28-55 4-30 (84)
54 cd06105 ScCit1-2_like Saccharo 25.2 1.1E+02 0.0025 21.9 3.3 34 55-89 363-397 (427)
55 PRK10642 proline/glycine betai 24.7 2.6E+02 0.0056 19.8 6.3 44 27-73 240-284 (490)
56 PF06609 TRI12: Fungal trichot 22.8 3.4E+02 0.0074 20.5 5.5 14 63-76 67-80 (599)
57 PF07690 MFS_1: Major Facilita 22.1 1.7E+02 0.0037 18.9 3.6 18 56-73 222-240 (352)
58 COG4064 MtrG Tetrahydromethano 22.0 1.4E+02 0.0031 15.8 4.1 13 38-50 53-65 (75)
59 PRK10406 alpha-ketoglutarate t 21.5 2.8E+02 0.0062 19.1 6.4 43 27-73 234-277 (432)
60 COG0738 FucP Fucose permease [ 21.4 3.3E+02 0.0071 19.8 5.6 42 27-73 228-270 (422)
61 KOG0319|consensus 20.6 1.5E+02 0.0033 23.0 3.3 33 13-45 626-658 (775)
62 PF02990 EMP70: Endomembrane p 20.5 1.7E+02 0.0037 21.4 3.6 24 29-54 252-275 (521)
63 PRK11043 putative transporter; 20.4 2.8E+02 0.0062 18.7 6.2 43 26-73 194-236 (401)
64 TIGR01793 cit_synth_euk citrat 20.1 1.1E+02 0.0025 21.9 2.5 30 58-88 370-399 (427)
No 1
>KOG0569|consensus
Probab=99.27 E-value=1.3e-11 Score=86.30 Aligned_cols=65 Identities=23% Similarity=0.384 Sum_probs=58.1
Q ss_pred hhHHHhhhcCChhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHhcCCCC-ChhHHHHHHHHHHhhc
Q psy5075 26 EHWKKFELRSPTGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRNAGTRI-APSTASIIVGAVQVFS 90 (91)
Q Consensus 26 ~~~~~lf~~~~~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~~g~~~-~~~~~~~~~~~~~~v~ 90 (91)
.++++++++|+.|+++.+++.+...||++|++++.+|+..||+++|++. ++.+++...+++++++
T Consensus 256 ~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~ 321 (485)
T KOG0569|consen 256 ISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLS 321 (485)
T ss_pred CcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999984 4677788887777764
No 2
>KOG0254|consensus
Probab=98.66 E-value=5.7e-08 Score=68.18 Aligned_cols=62 Identities=31% Similarity=0.534 Sum_probs=52.6
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHhcCCCCChhHHHHHHHHHHhhc
Q psy5075 28 WKKFELRSPTGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRNAGTRIAPSTASIIVGAVQVFS 90 (91)
Q Consensus 28 ~~~lf~~~~~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~~g~~~~~~~~~~~~~~~~~v~ 90 (91)
+.+++. |..+||+.+++.++.+||++|++.+.||++.+|+.+|.+.+....+++.+++++++
T Consensus 284 ~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~ 345 (513)
T KOG0254|consen 284 WGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLG 345 (513)
T ss_pred HHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence 556665 78999999999999999999999999999999999998744466777777777665
No 3
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.87 E-value=2.6e-07 Score=63.25 Aligned_cols=62 Identities=32% Similarity=0.546 Sum_probs=48.5
Q ss_pred hhHHHhhhcCChhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHhcCCCCChhHHHHHHHHHHh
Q psy5075 26 EHWKKFELRSPTGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRNAGTRIAPSTASIIVGAVQV 88 (91)
Q Consensus 26 ~~~~~lf~~~~~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~~g~~~~~~~~~~~~~~~~~ 88 (91)
.+++++++++.+++++++.+.+..+++++|.+.+.+|.+.+++..|.+.. ...+.+.++..+
T Consensus 239 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~ 300 (451)
T PF00083_consen 239 ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS-FLATLILGLVNF 300 (451)
T ss_pred eeeeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence 45778888877899999999999999999999999999999999987633 333334444333
No 4
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=92.88 E-value=0.72 Score=31.92 Aligned_cols=34 Identities=35% Similarity=0.685 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhhchhhHHHhHHHHHHhcCCCC
Q psy5075 41 IGIIMGLMTFQRFSGVSALIYYTVDIFRNAGTRI 74 (91)
Q Consensus 41 ~~i~~~~~~~~q~~G~~~i~~y~~~il~~~g~~~ 74 (91)
+.+++.+..+++..|.+.+.+|.|.++...|.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~ 305 (479)
T PRK10077 272 IVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAST 305 (479)
T ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCC
Confidence 3444556678899999999999999999988763
No 5
>KOG2532|consensus
Probab=89.58 E-value=2.4 Score=30.29 Aligned_cols=66 Identities=12% Similarity=-0.046 Sum_probs=43.7
Q ss_pred CCcchhhc-chhhhhhhhhhhhh-------hhHHHhhhcCChhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHh-cCCCC
Q psy5075 4 DGEDKRAS-SKEDFEGNCFVKLW-------EHWKKFELRSPTGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRN-AGTRI 74 (91)
Q Consensus 4 ~~~~~~~~-~~~~~ei~~~~~~~-------~~~~~lf~~~~~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~-~g~~~ 74 (91)
+|.+++.. .+|.+.|++.+..+ .+|++++++| .+.++++..+....|...+..|.|..+++ .|++.
T Consensus 219 ~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~-----~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v 293 (466)
T KOG2532|consen 219 SPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSP-----PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDV 293 (466)
T ss_pred CcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCH-----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCh
Confidence 45555533 35666666554432 2578887764 33445566677888999999999999998 57763
No 6
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=89.05 E-value=1 Score=24.87 Aligned_cols=46 Identities=20% Similarity=0.016 Sum_probs=27.0
Q ss_pred CcchhhcchhhhhhhhhhhhhhhHHHhhhcCChhHHHHHHHHHHHHH
Q psy5075 5 GEDKRASSKEDFEGNCFVKLWEHWKKFELRSPTGKAIGIIMGLMTFQ 51 (91)
Q Consensus 5 ~~~~~~~~~~~~ei~~~~~~~~~~~~lf~~~~~~~~~~i~~~~~~~~ 51 (91)
|++.+...+|..++.........-...++ +.++|.++++..+++..
T Consensus 35 ~e~R~~lE~E~~~l~~~l~~~E~eL~~Lr-kENrK~~~ls~~l~~v~ 80 (85)
T PF15188_consen 35 PEARRSLEKELNELKEKLENNEKELKLLR-KENRKSMLLSVALFFVC 80 (85)
T ss_pred hHHHHHHHHHHHHHHHHhhccHHHHHHHH-HhhhhhHHHHHHHHHHH
Confidence 34444555566666655544333333443 48999999988766543
No 7
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=86.86 E-value=6.9 Score=26.49 Aligned_cols=38 Identities=34% Similarity=0.622 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHhcCCCC
Q psy5075 37 TGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRNAGTRI 74 (91)
Q Consensus 37 ~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~~g~~~ 74 (91)
.+++.++...+..+.+..+.+.+.+|.|.+++..|.+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 318 (481)
T TIGR00879 281 IRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVST 318 (481)
T ss_pred hHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCc
Confidence 35667777777788888888889999999999988763
No 8
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=86.33 E-value=1.2 Score=31.50 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=24.5
Q ss_pred hHHHhhhcC---ChhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHhcCCC
Q psy5075 27 HWKKFELRS---PTGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRNAGTR 73 (91)
Q Consensus 27 ~~~~lf~~~---~~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~~g~~ 73 (91)
+|+++|+++ +++++++.....++.+.+ ..+.+..|.|.+++..|.+
T Consensus 273 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~p~i~~~~G~~ 321 (502)
T TIGR00887 273 SWSDFFTHFFKWRHGKHLLGTAGSWFLLDI-AFYGVNLNQKVILSAIGYS 321 (502)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHccccccHHHHHHHcCC
Confidence 577777643 233333333333333322 2334556689999888875
No 9
>KOG3626|consensus
Probab=82.91 E-value=9.7 Score=29.04 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhhchhhHHHhHHHHHHh-cCCC
Q psy5075 40 AIGIIMGLMTFQRFSGVSALIYYTVDIFRN-AGTR 73 (91)
Q Consensus 40 ~~~i~~~~~~~~q~~G~~~i~~y~~~il~~-~g~~ 73 (91)
++++.+.+...-+...+.....|.|..+++ .|.+
T Consensus 392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~s 426 (735)
T KOG3626|consen 392 PIFMLVVLASVIESLAITGYITFLPKYLETQFGIS 426 (735)
T ss_pred chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCC
Confidence 456666666667888888888999999988 6875
No 10
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=79.76 E-value=9.4 Score=26.89 Aligned_cols=58 Identities=17% Similarity=0.160 Sum_probs=34.9
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHh-cCCCCC-hhHHHHHHHHHHhhc
Q psy5075 28 WKKFELRSPTGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRN-AGTRIA-PSTASIIVGAVQVFS 90 (91)
Q Consensus 28 ~~~lf~~~~~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~-~g~~~~-~~~~~~~~~~~~~v~ 90 (91)
..+++++|+.+..+.+. +--++|......|...++++ .|++.+ -.+..+.+|+..++|
T Consensus 204 ~~~~l~~p~v~~~l~~t-----~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~G 263 (394)
T COG2814 204 LLRLLRRPGVLLGLLAT-----FLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIG 263 (394)
T ss_pred HHHHhcCchHHHHHHHH-----HHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHH
Confidence 34467776666554443 23456667778888888877 687643 235555666655554
No 11
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=79.52 E-value=15 Score=25.50 Aligned_cols=29 Identities=14% Similarity=0.056 Sum_probs=20.7
Q ss_pred HHHHHHHhhhchhhHHHhHHHHHHh-cCCC
Q psy5075 45 MGLMTFQRFSGVSALIYYTVDIFRN-AGTR 73 (91)
Q Consensus 45 ~~~~~~~q~~G~~~i~~y~~~il~~-~g~~ 73 (91)
+.+..+.+..+......|.|.++.+ .|.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s 295 (465)
T TIGR00894 266 IWFAIFGHFWLYTILPTYLPTFISWVLRVS 295 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 3445556666777888899999876 5765
No 12
>TIGR00895 2A0115 benzoate transport.
Probab=73.89 E-value=21 Score=23.56 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=14.9
Q ss_pred hhhchhhHHHhHHHHHHhcCCC
Q psy5075 52 RFSGVSALIYYTVDIFRNAGTR 73 (91)
Q Consensus 52 q~~G~~~i~~y~~~il~~~g~~ 73 (91)
...+...+..|.|.+....|.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~g~~ 283 (398)
T TIGR00895 262 LLVGVYFLTNWLPKLMVELGFS 283 (398)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 3445556677788777777765
No 13
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=73.15 E-value=13 Score=20.42 Aligned_cols=33 Identities=6% Similarity=0.185 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHh
Q psy5075 37 TGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRN 69 (91)
Q Consensus 37 ~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~ 69 (91)
.|+++...+...++.-.-|...+..|.|.++..
T Consensus 13 ~r~r~~~~l~~i~l~~y~~~~ll~a~~p~~m~~ 45 (91)
T PF04341_consen 13 RRRRLAWPLSAIFLVLYFGFVLLSAFAPELMAT 45 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHcC
Confidence 345555555566666677888888999999876
No 14
>PRK11663 regulatory protein UhpC; Provisional
Probab=72.78 E-value=9.6 Score=26.35 Aligned_cols=18 Identities=11% Similarity=0.043 Sum_probs=11.6
Q ss_pred hhhHHHhHHHHHHh-cCCC
Q psy5075 56 VSALIYYTVDIFRN-AGTR 73 (91)
Q Consensus 56 ~~~i~~y~~~il~~-~g~~ 73 (91)
...+..|.|.++.+ .|.+
T Consensus 259 ~~~~~~~~p~~l~~~~g~s 277 (434)
T PRK11663 259 RAAINDWGNLYMSETLGVD 277 (434)
T ss_pred HHHHHHHHHHHHHhccCCC
Confidence 34566678888854 5765
No 15
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=71.48 E-value=12 Score=28.49 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=30.3
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHhc
Q psy5075 28 WKKFELRSPTGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRNA 70 (91)
Q Consensus 28 ~~~lf~~~~~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~~ 70 (91)
++.+|+ |.+++++++..++++...+ +.+.+..|.|.+++..
T Consensus 435 ~~~lf~-~~~~~~tl~l~~~wf~~~~-~yygl~~w~P~~~~~~ 475 (742)
T TIGR01299 435 FLRCFN-PEVREITIKLMGVWFTLSF-GYYGLSVWFPDMIKHL 475 (742)
T ss_pred HHHHcC-ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 555664 5788888887776655554 7888999999998663
No 16
>PRK12307 putative sialic acid transporter; Provisional
Probab=71.37 E-value=25 Score=23.94 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=23.2
Q ss_pred hHHHhhhcCChhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHhcCCC
Q psy5075 27 HWKKFELRSPTGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRNAGTR 73 (91)
Q Consensus 27 ~~~~lf~~~~~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~~g~~ 73 (91)
.+++++++|..+..+ +... ..+....+...+..+.|..+...|.+
T Consensus 220 ~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~ 264 (426)
T PRK12307 220 SMKGLFNRAQFPLTL-CVFI-VLFSIFGANWPIFGLLPTYLAGEGFD 264 (426)
T ss_pred HHHHHHhhchHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 456677665444322 2222 22223333334566778888877764
No 17
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=70.94 E-value=8.8 Score=25.18 Aligned_cols=19 Identities=5% Similarity=0.088 Sum_probs=11.2
Q ss_pred chhhHHHhHHHHHHh-cCCC
Q psy5075 55 GVSALIYYTVDIFRN-AGTR 73 (91)
Q Consensus 55 G~~~i~~y~~~il~~-~g~~ 73 (91)
+...+..|.|..+.+ .|.+
T Consensus 231 ~~~~~~~~~~~~~~~~~g~~ 250 (379)
T TIGR00881 231 VRTGILDWSPLYLTQEKGFS 250 (379)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 334455667777755 5664
No 18
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=69.43 E-value=14 Score=26.16 Aligned_cols=34 Identities=12% Similarity=0.001 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhhchhhHHHhHHHHHHhcCCC
Q psy5075 40 AIGIIMGLMTFQRFSGVSALIYYTVDIFRNAGTR 73 (91)
Q Consensus 40 ~~~i~~~~~~~~q~~G~~~i~~y~~~il~~~g~~ 73 (91)
|+..-+.+++.-|=...+.++.+.|.|+.+.|.+
T Consensus 208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~s 241 (395)
T COG2807 208 PLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLS 241 (395)
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCC
Confidence 3344455666667778888999999999999986
No 19
>PRK15075 citrate-proton symporter; Provisional
Probab=67.65 E-value=16 Score=25.29 Aligned_cols=24 Identities=8% Similarity=-0.064 Sum_probs=18.3
Q ss_pred HHhhhchhhHHHhHHHHHHh-cCCC
Q psy5075 50 FQRFSGVSALIYYTVDIFRN-AGTR 73 (91)
Q Consensus 50 ~~q~~G~~~i~~y~~~il~~-~g~~ 73 (91)
+.+..+.+.+.+|.|.++++ .|.+
T Consensus 248 ~~~~~~~~~~~~~~p~~l~~~~g~~ 272 (434)
T PRK15075 248 AMTTVSFYLITVYTPTFGKTVLHLS 272 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33556677888999999987 5876
No 20
>KOG2504|consensus
Probab=65.65 E-value=34 Score=24.83 Aligned_cols=56 Identities=11% Similarity=0.159 Sum_probs=34.8
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHhcCCCC-ChhHHHHHHHHHHhh
Q psy5075 29 KKFELRSPTGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRNAGTRI-APSTASIIVGAVQVF 89 (91)
Q Consensus 29 ~~lf~~~~~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~~g~~~-~~~~~~~~~~~~~~v 89 (91)
.++|++ +.++...+...-...|.....+|.|...++.|.+. +......++++.+++
T Consensus 292 ~~ll~~-----~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~ 348 (509)
T KOG2504|consen 292 LSLLKD-----PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDII 348 (509)
T ss_pred HHHHcC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhh
Confidence 355655 34444445555566788888889999999988873 334444455555443
No 21
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=63.55 E-value=17 Score=25.14 Aligned_cols=20 Identities=0% Similarity=-0.064 Sum_probs=13.8
Q ss_pred hchhhHHHhHHHHHHh-cCCC
Q psy5075 54 SGVSALIYYTVDIFRN-AGTR 73 (91)
Q Consensus 54 ~G~~~i~~y~~~il~~-~g~~ 73 (91)
.+...+..|.|..+++ .|.+
T Consensus 265 ~~~~~~~~~~p~~l~~~~g~s 285 (438)
T TIGR00712 265 LLRYGVLDWSPTYLKEVKHFA 285 (438)
T ss_pred HHHHHHHHhHHHHHHHccCCC
Confidence 4445567788999987 4654
No 22
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=62.49 E-value=34 Score=23.35 Aligned_cols=42 Identities=14% Similarity=0.095 Sum_probs=26.2
Q ss_pred hHHHhhhcCChhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHhcCCC
Q psy5075 27 HWKKFELRSPTGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRNAGTR 73 (91)
Q Consensus 27 ~~~~lf~~~~~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~~g~~ 73 (91)
.+++++++|..+ . +.+..+....+...+..|.|.++++.|.+
T Consensus 184 ~~~~ll~~~~~~-~----~~~~~~~~~~~~~~~~~wlp~~L~~~g~s 225 (368)
T TIGR00903 184 EFGALAGRKDLW-I----IGAILGFGVALFDNLAIWLEAALRPAGLE 225 (368)
T ss_pred HHHHHHcChhHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 466777764432 2 22233344555666788999999888765
No 23
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=61.89 E-value=2.6 Score=30.62 Aligned_cols=37 Identities=11% Similarity=-0.001 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHh-cCCC
Q psy5075 37 TGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRN-AGTR 73 (91)
Q Consensus 37 ~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~-~g~~ 73 (91)
.+.|+++...+....+..+......|.|..++. .|.+
T Consensus 302 l~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~s 339 (539)
T PF03137_consen 302 LTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLS 339 (539)
T ss_dssp --------------------------------------
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 555777777777778888888899999999988 5654
No 24
>PF12832 MFS_1_like: MFS_1 like family
Probab=61.66 E-value=23 Score=18.76 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=21.2
Q ss_pred HHHHhhhchhhHHHhHHHHHHhcCCC
Q psy5075 48 MTFQRFSGVSALIYYTVDIFRNAGTR 73 (91)
Q Consensus 48 ~~~~q~~G~~~i~~y~~~il~~~g~~ 73 (91)
..+-.+++...+..|.+..+++.|.+
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl~ 33 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQLGLS 33 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhcCCC
Confidence 44556778888999999999998885
No 25
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=56.07 E-value=27 Score=24.31 Aligned_cols=17 Identities=0% Similarity=0.110 Sum_probs=11.9
Q ss_pred hhHHHhHHHHHHh-cCCC
Q psy5075 57 SALIYYTVDIFRN-AGTR 73 (91)
Q Consensus 57 ~~i~~y~~~il~~-~g~~ 73 (91)
.....|.|..+++ .|.+
T Consensus 270 ~~~~~~~P~~l~~~~g~s 287 (452)
T PRK11273 270 YGILDWSPTYLKEVKHFA 287 (452)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 3456788998887 4665
No 26
>COG3162 Predicted membrane protein [Function unknown]
Probab=50.65 E-value=46 Score=18.95 Aligned_cols=47 Identities=9% Similarity=0.172 Sum_probs=24.3
Q ss_pred hhhhhhhhHHHhhhcCChhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHh
Q psy5075 20 CFVKLWEHWKKFELRSPTGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRN 69 (91)
Q Consensus 20 ~~~~~~~~~~~lf~~~~~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~ 69 (91)
+.++.+.++.++.+. |+++...+.+.++.-.-|...+..|.|..+..
T Consensus 7 ~~i~a~p~f~eLv~k---r~~Fa~~ltl~flv~Y~~filLiaf~~~~l~t 53 (102)
T COG3162 7 QRIAANPRFRELVRK---RRRFAVPLTLIFLVVYFGFILLIAFAPGWLAT 53 (102)
T ss_pred cccccCHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcC
Confidence 344556667776643 33333333334444444555566666666655
No 27
>KOG0253|consensus
Probab=50.51 E-value=23 Score=25.59 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=22.8
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHh
Q psy5075 28 WKKFELRSPTGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRN 69 (91)
Q Consensus 28 ~~~lf~~~~~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~ 69 (91)
..+++ .|+.||+++.-...++. |+..||...++..
T Consensus 316 ~~nLl-sp~lrkttlllw~iwfg------nafsyyg~VLltt 350 (528)
T KOG0253|consen 316 TTNLL-SPKLRKTTLLLWRIWFG------NAFSYYGSVLLTT 350 (528)
T ss_pred hHhhc-ChHHHHHHHHHHHHHHh------hHHHHHHHHHHHH
Confidence 44555 47899998775555544 4455787777755
No 28
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=49.73 E-value=51 Score=23.84 Aligned_cols=15 Identities=7% Similarity=0.007 Sum_probs=10.4
Q ss_pred HHHhHHHHHHh-cCCC
Q psy5075 59 LIYYTVDIFRN-AGTR 73 (91)
Q Consensus 59 i~~y~~~il~~-~g~~ 73 (91)
+..++|..+.+ .|++
T Consensus 271 i~dW~p~YL~e~k~~s 286 (448)
T COG2271 271 INDWGPLYLSEVKGFS 286 (448)
T ss_pred HhhhHHHHHHHhcCCC
Confidence 66777887766 4665
No 29
>PF13347 MFS_2: MFS/sugar transport protein
Probab=48.33 E-value=37 Score=23.37 Aligned_cols=43 Identities=14% Similarity=0.065 Sum_probs=20.4
Q ss_pred hhHHHhhhcCChhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHh
Q psy5075 26 EHWKKFELRSPTGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRN 69 (91)
Q Consensus 26 ~~~~~lf~~~~~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~ 69 (91)
+.+++++++|.++ .++++..+..+..........||....+..
T Consensus 216 ~~~~~~~~nr~~~-~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~ 258 (428)
T PF13347_consen 216 DSLRSLFRNRPFR-ILLLAFFLQWLAFALMNTFLPYYFTYVLGN 258 (428)
T ss_pred cchhhhcccchHH-HHHHHHHHHHhhhhhhhhHHHHHHHHHhcC
Confidence 4566777776544 333433333333322233445555555544
No 30
>TIGR00895 2A0115 benzoate transport.
Probab=47.92 E-value=79 Score=20.84 Aligned_cols=36 Identities=14% Similarity=-0.022 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHhhhchhhHHHhHHHHHHhcCCC
Q psy5075 38 GKAIGIIMGLMTFQRFSGVSALIYYTVDIFRNAGTR 73 (91)
Q Consensus 38 ~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~~g~~ 73 (91)
+++.++...+..+....+.....++.|.+.+..|.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLD 50 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCC
Confidence 334444444444444444556777888888888875
No 31
>TIGR00898 2A0119 cation transport protein.
Probab=47.66 E-value=96 Score=21.74 Aligned_cols=21 Identities=14% Similarity=0.002 Sum_probs=13.9
Q ss_pred hHHHhhhcCChhHHHHHHHHH
Q psy5075 27 HWKKFELRSPTGKAIGIIMGL 47 (91)
Q Consensus 27 ~~~~lf~~~~~~~~~~i~~~~ 47 (91)
++++++++|..++.+++....
T Consensus 315 ~~~~l~~~~~~~~~~~~~~~~ 335 (505)
T TIGR00898 315 SFLDLFRTPNLRKTTLCLMML 335 (505)
T ss_pred cHHHHhCChHHHHHHHHHHHH
Confidence 567788887777766554433
No 32
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=47.22 E-value=72 Score=21.46 Aligned_cols=34 Identities=6% Similarity=-0.043 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhhchhhHHHhHHHHHHhcCCC
Q psy5075 40 AIGIIMGLMTFQRFSGVSALIYYTVDIFRNAGTR 73 (91)
Q Consensus 40 ~~~i~~~~~~~~q~~G~~~i~~y~~~il~~~g~~ 73 (91)
|.+.+..++.+++..|.+....+.|.+.++.|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s 36 (392)
T PRK10473 3 RFLLCSFALVLLYPAGIDMYLVGLPRIAADLNAS 36 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCC
Confidence 4555667788888888888888899998888875
No 33
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=45.31 E-value=88 Score=20.71 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=12.7
Q ss_pred hhhHHHhHHHHHHhcCCC
Q psy5075 56 VSALIYYTVDIFRNAGTR 73 (91)
Q Consensus 56 ~~~i~~y~~~il~~~g~~ 73 (91)
......|.|.++++.|.+
T Consensus 213 ~~~~~~~lp~~~~~~g~~ 230 (355)
T TIGR00896 213 YYSLIGWLPAILISHGAS 230 (355)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 344567788888887765
No 34
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=44.52 E-value=74 Score=21.88 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=18.1
Q ss_pred HHHHHHhhhchhhHHHhHHHHHHhc
Q psy5075 46 GLMTFQRFSGVSALIYYTVDIFRNA 70 (91)
Q Consensus 46 ~~~~~~q~~G~~~i~~y~~~il~~~ 70 (91)
.+..+.+..+...+..|.|.++++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~p~~l~~~ 272 (412)
T TIGR02332 248 TLAYFCLTNTLSAINIWTPQILQSF 272 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455566777889999999885
No 35
>KOG2533|consensus
Probab=43.41 E-value=21 Score=25.85 Aligned_cols=43 Identities=12% Similarity=-0.025 Sum_probs=24.6
Q ss_pred hhHHHhhhcCChhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHh-cCCC
Q psy5075 26 EHWKKFELRSPTGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRN-AGTR 73 (91)
Q Consensus 26 ~~~~~lf~~~~~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~-~g~~ 73 (91)
..+++.+++|..+--. ++.+...--.+.+.+|+|.++++ .|.+
T Consensus 264 ~~~~~a~~dp~vw~~~-----l~~~~~~lv~~~~~~~lpl~l~~~~~~s 307 (495)
T KOG2533|consen 264 KGFKEALKDPGVWPFS-----LCYFFLKLVNYGFSYWLPLYLKSNGGYS 307 (495)
T ss_pred HHHHHHHhchhHHHHH-----HHHHHHhhccccHHHHHHHHHHcCCCcC
Confidence 3466677776544222 22222333345578999999999 3454
No 36
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=42.55 E-value=94 Score=20.18 Aligned_cols=12 Identities=8% Similarity=-0.330 Sum_probs=6.5
Q ss_pred hHHHhhhcCChh
Q psy5075 27 HWKKFELRSPTG 38 (91)
Q Consensus 27 ~~~~lf~~~~~~ 38 (91)
.++.++++|..+
T Consensus 202 ~~~~~~~~~~~~ 213 (365)
T TIGR00900 202 GIKFVLKNPLLR 213 (365)
T ss_pred HHHHHHcCcHHH
Confidence 455566665444
No 37
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=41.64 E-value=98 Score=21.07 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=15.3
Q ss_pred hhhchhhHHHhHHHHHHhcCCC
Q psy5075 52 RFSGVSALIYYTVDIFRNAGTR 73 (91)
Q Consensus 52 q~~G~~~i~~y~~~il~~~g~~ 73 (91)
+..+......|.|..++..|.+
T Consensus 234 ~~~~~~~~~~~~p~~~~~~g~s 255 (402)
T TIGR00897 234 NTIGLFGFAVFLPMFVAELGFS 255 (402)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 3345556677889888887775
No 38
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=39.84 E-value=1.1e+02 Score=20.11 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=22.4
Q ss_pred hHHHhhhcCChhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHh-cCCC
Q psy5075 27 HWKKFELRSPTGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRN-AGTR 73 (91)
Q Consensus 27 ~~~~lf~~~~~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~-~g~~ 73 (91)
++++.++++ +++++......++ ...+...+..|.|.++++ .|.+
T Consensus 209 ~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~ 253 (394)
T TIGR00883 209 PIRETLTKH--RKPFLLGLGLVIA-TTTTFYLITTYLPTYLTQTLGLS 253 (394)
T ss_pred CHHHHHHhc--hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555543 2334443333333 333445566778888844 6665
No 39
>PRK11663 regulatory protein UhpC; Provisional
Probab=38.48 E-value=1.1e+02 Score=21.12 Aligned_cols=37 Identities=14% Similarity=-0.018 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHhcCCC
Q psy5075 37 TGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRNAGTR 73 (91)
Q Consensus 37 ~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~~g~~ 73 (91)
.+++++....+..+...........+.|.+.++.|.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s 56 (434)
T PRK11663 20 WRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLS 56 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCC
Confidence 3444444444444444444445667788888888875
No 40
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=38.00 E-value=83 Score=18.25 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHhcCCCCChhHHHHHHHHHHh
Q psy5075 37 TGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRNAGTRIAPSTASIIVGAVQV 88 (91)
Q Consensus 37 ~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~~g~~~~~~~~~~~~~~~~~ 88 (91)
.+|.+.+++.+.++ |...+..-.-..+...+-+.+..+..+++|++.+
T Consensus 40 pwK~I~la~~Lli~----G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~f 87 (115)
T PF05915_consen 40 PWKSIALAVFLLIF----GTVLIIIGLLLFFGHIDGDRDRGWALLILGILCF 87 (115)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHhcccCCCCcccchHHHHHHHHH
Confidence 46666666666554 3333332222222333322233344555555544
No 41
>PRK10504 putative transporter; Provisional
Probab=35.26 E-value=1.5e+02 Score=20.51 Aligned_cols=36 Identities=8% Similarity=0.004 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHhcCCC
Q psy5075 37 TGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRNAGTR 73 (91)
Q Consensus 37 ~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~~g~~ 73 (91)
.+|++++.. +..+.+......+..+.|.+.++.|.+
T Consensus 8 ~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~g~s 43 (471)
T PRK10504 8 VRWQLWIVA-FGFFMQSLDTTIVNTALPSMAQSLGES 43 (471)
T ss_pred hHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHhCcC
Confidence 444544433 334445555556677889999888875
No 42
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=34.16 E-value=1.3e+02 Score=20.95 Aligned_cols=19 Identities=5% Similarity=-0.183 Sum_probs=13.0
Q ss_pred chhhHHHhHHHHHHh-cCCC
Q psy5075 55 GVSALIYYTVDIFRN-AGTR 73 (91)
Q Consensus 55 G~~~i~~y~~~il~~-~g~~ 73 (91)
+.....+|.|..+++ .|.+
T Consensus 273 ~~~~~~~~~p~yl~~~~g~s 292 (467)
T PRK09556 273 VRIGIDNWSPVYAFQELGFS 292 (467)
T ss_pred HHHHHHHHHHHHHHHccCCC
Confidence 344567888988865 6775
No 43
>TIGR00893 2A0114 d-galactonate transporter.
Probab=33.94 E-value=1e+02 Score=20.11 Aligned_cols=21 Identities=10% Similarity=0.146 Sum_probs=12.3
Q ss_pred hhchhhHHHhHHHHHHh-cCCC
Q psy5075 53 FSGVSALIYYTVDIFRN-AGTR 73 (91)
Q Consensus 53 ~~G~~~i~~y~~~il~~-~g~~ 73 (91)
..+......|.|..+.+ .|.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~ 249 (399)
T TIGR00893 228 NIGLGFFLTWFPTYLVQERGLS 249 (399)
T ss_pred HhHHHHHHHHHHHHHHHHhccc
Confidence 33444566677777765 5654
No 44
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=33.68 E-value=1.5e+02 Score=20.00 Aligned_cols=14 Identities=0% Similarity=-0.382 Sum_probs=8.7
Q ss_pred hhHHHhhhcCChhH
Q psy5075 26 EHWKKFELRSPTGK 39 (91)
Q Consensus 26 ~~~~~lf~~~~~~~ 39 (91)
++.++++++|..+.
T Consensus 206 ~~~~~~l~~~~~~~ 219 (396)
T TIGR00882 206 KLALELFRQRKFWM 219 (396)
T ss_pred HHHHHHHcCCcHHH
Confidence 35677787765543
No 45
>PRK15075 citrate-proton symporter; Provisional
Probab=33.15 E-value=1.7e+02 Score=20.26 Aligned_cols=38 Identities=8% Similarity=-0.017 Sum_probs=27.6
Q ss_pred ChhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHhcCCC
Q psy5075 36 PTGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRNAGTR 73 (91)
Q Consensus 36 ~~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~~g~~ 73 (91)
+.+++...++.+-.+.+.-....+.++.|.+.++.+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~ 48 (434)
T PRK15075 11 ESKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPA 48 (434)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44555566666666777777777888899888888765
No 46
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=32.35 E-value=1.6e+02 Score=19.98 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=14.8
Q ss_pred hchhhHHHhHHHHHHhcCCC
Q psy5075 54 SGVSALIYYTVDIFRNAGTR 73 (91)
Q Consensus 54 ~G~~~i~~y~~~il~~~g~~ 73 (91)
.+...+..|.|.++.+.|.+
T Consensus 219 ~~~~~~~~~lp~~l~~~g~s 238 (393)
T PRK09705 219 GGYASLIAWLPAFYIEIGAS 238 (393)
T ss_pred HHHHHHHHHHHHHHHHcCCC
Confidence 35556777889988887765
No 47
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=30.57 E-value=1.8e+02 Score=20.02 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhhchhhHHHhHHHHHHhcCCC
Q psy5075 42 GIIMGLMTFQRFSGVSALIYYTVDIFRNAGTR 73 (91)
Q Consensus 42 ~i~~~~~~~~q~~G~~~i~~y~~~il~~~g~~ 73 (91)
++.+.+..+...-+.+......|.+.++.|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s 35 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSS 35 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33344444555555666777788888887765
No 48
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=30.28 E-value=1.9e+02 Score=21.65 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=24.4
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHh-cCCC
Q psy5075 28 WKKFELRSPTGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRN-AGTR 73 (91)
Q Consensus 28 ~~~lf~~~~~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~-~g~~ 73 (91)
++.++++|.++ ...+..+-...+......|.|..++. .|.+
T Consensus 323 ~~~Ll~n~~f~-----~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s 364 (633)
T TIGR00805 323 IKRLLCNPIYM-----LVILAQVIDSLAFNGYITFLPKYLENQYGIS 364 (633)
T ss_pred HHHHHcCcHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 44566654333 23333333455666778899999987 5764
No 49
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=28.70 E-value=1.8e+02 Score=19.22 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=15.3
Q ss_pred HHhhhchhhHHHhHHHHHHhcCCC
Q psy5075 50 FQRFSGVSALIYYTVDIFRNAGTR 73 (91)
Q Consensus 50 ~~q~~G~~~i~~y~~~il~~~g~~ 73 (91)
+.+..|.+......|.+.++.|.+
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~~g~s 38 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAADLSTP 38 (385)
T ss_pred HHHHHHHHHhcccHHHHHHHhCCC
Confidence 334445566666677777777775
No 50
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=26.62 E-value=2.4e+02 Score=19.97 Aligned_cols=35 Identities=17% Similarity=-0.015 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHhhhchhhHHHhHHHHHHhcCCC
Q psy5075 38 GKAIGIIMGLMTFQRFSGVSALIYYTVDIFRNAGTR 73 (91)
Q Consensus 38 ~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~~g~~ 73 (91)
++.+..+ ...++..+.+...+..+.|.+.++.|.+
T Consensus 35 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~gls 69 (476)
T PLN00028 35 MRAFHLS-WISFFTCFVSTFAAAPLLPIIRDNLNLT 69 (476)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3344333 3344445555566777788888888886
No 51
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=26.46 E-value=1.3e+02 Score=21.45 Aligned_cols=11 Identities=0% Similarity=-0.529 Sum_probs=6.2
Q ss_pred HHHhhhcCChh
Q psy5075 28 WKKFELRSPTG 38 (91)
Q Consensus 28 ~~~lf~~~~~~ 38 (91)
..++++.|+++
T Consensus 213 ~~~l~k~~~fw 223 (412)
T PF01306_consen 213 VLSLFKMRNFW 223 (412)
T ss_dssp HHHHTTSHHHH
T ss_pred HHHHhcchhHH
Confidence 45567665444
No 52
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=25.62 E-value=2.2e+02 Score=19.20 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=15.7
Q ss_pred HhhhchhhHHHhHHHHHHhcCCC
Q psy5075 51 QRFSGVSALIYYTVDIFRNAGTR 73 (91)
Q Consensus 51 ~q~~G~~~i~~y~~~il~~~g~~ 73 (91)
...........|.|.++++.|.+
T Consensus 231 ~~~~~~~~~~~~~p~~~~~~g~s 253 (406)
T PRK11551 231 FTLIVLYFLLNWLPSLLVGQGLS 253 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC
Confidence 33444556667788888888775
No 53
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=25.61 E-value=1.2e+02 Score=16.39 Aligned_cols=27 Identities=22% Similarity=0.101 Sum_probs=16.7
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhhhc
Q psy5075 28 WKKFELRSPTGKAIGIIMGLMTFQRFSG 55 (91)
Q Consensus 28 ~~~lf~~~~~~~~~~i~~~~~~~~q~~G 55 (91)
|+--|++|.++- .+++.++.+.||+.|
T Consensus 4 wKvR~kN~~~w~-ali~~i~l~vq~~~~ 30 (84)
T PF04531_consen 4 WKVRFKNKAFWV-ALISAILLLVQQVGG 30 (84)
T ss_pred hhhcccCHHHHH-HHHHHHHHHHHHHHH
Confidence 444466654544 455666777888877
No 54
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
Probab=25.23 E-value=1.1e+02 Score=21.91 Aligned_cols=34 Identities=6% Similarity=0.004 Sum_probs=21.8
Q ss_pred chh-hHHHhHHHHHHhcCCCCChhHHHHHHHHHHhh
Q psy5075 55 GVS-ALIYYTVDIFRNAGTRIAPSTASIIVGAVQVF 89 (91)
Q Consensus 55 G~~-~i~~y~~~il~~~g~~~~~~~~~~~~~~~~~v 89 (91)
|.. .+-+|+..++..+|++. ....+.++++.+++
T Consensus 363 ~l~pNVDfysg~l~~~lGip~-~~~ft~lFa~sR~~ 397 (427)
T cd06105 363 NPWPNVDAHSGVLLQYYGLTE-MNYYTVLFGVSRAL 397 (427)
T ss_pred CCCCChhHHHHHHHHHcCCCc-hhhhHHHHHHHHHH
Confidence 433 58899999999999972 22334444444443
No 55
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=24.72 E-value=2.6e+02 Score=19.77 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=25.8
Q ss_pred hHHHhhhcCChhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHh-cCCC
Q psy5075 27 HWKKFELRSPTGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRN-AGTR 73 (91)
Q Consensus 27 ~~~~lf~~~~~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~-~g~~ 73 (91)
+++++++. .++++.++....++ ...+...+..|.|.++++ .|.+
T Consensus 240 ~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~s 284 (490)
T PRK10642 240 SFKEIATK--HWRSLLTCIGLVIA-TNVTYYMLLTYMPSYLSHNLHYS 284 (490)
T ss_pred CHHHHHHH--hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence 45566653 44555554443333 334566677789998865 5765
No 56
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=22.82 E-value=3.4e+02 Score=20.52 Aligned_cols=14 Identities=14% Similarity=-0.187 Sum_probs=8.6
Q ss_pred HHHHHHhcCCCCCh
Q psy5075 63 TVDIFRNAGTRIAP 76 (91)
Q Consensus 63 ~~~il~~~g~~~~~ 76 (91)
.+.|..+.|.+.+.
T Consensus 67 l~~I~~diG~~~~~ 80 (599)
T PF06609_consen 67 LPYINADIGGSDNW 80 (599)
T ss_pred HHHHHHhcCCCccc
Confidence 35677777765433
No 57
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=22.12 E-value=1.7e+02 Score=18.87 Aligned_cols=18 Identities=11% Similarity=0.161 Sum_probs=10.4
Q ss_pred hhhHHHhHHHHH-HhcCCC
Q psy5075 56 VSALIYYTVDIF-RNAGTR 73 (91)
Q Consensus 56 ~~~i~~y~~~il-~~~g~~ 73 (91)
......|.|.++ +..|.+
T Consensus 222 ~~~~~~~~~~~l~~~~~~~ 240 (352)
T PF07690_consen 222 FSGFSFFLPLYLQEVLGFS 240 (352)
T ss_dssp HHHHHHHHHHHCCHHHHCC
T ss_pred HHHhhcccchhhhhccCCC
Confidence 333667777763 446664
No 58
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=21.98 E-value=1.4e+02 Score=15.84 Aligned_cols=13 Identities=15% Similarity=-0.131 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHH
Q psy5075 38 GKAIGIIMGLMTF 50 (91)
Q Consensus 38 ~~~~~i~~~~~~~ 50 (91)
.+.+++++.++..
T Consensus 53 LYGlVIGlil~~i 65 (75)
T COG4064 53 LYGLVIGLILCMI 65 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555443
No 59
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=21.45 E-value=2.8e+02 Score=19.08 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=22.2
Q ss_pred hHHHhhhcCChhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHh-cCCC
Q psy5075 27 HWKKFELRSPTGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRN-AGTR 73 (91)
Q Consensus 27 ~~~~lf~~~~~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~-~g~~ 73 (91)
++++++++ ++...+... ..+....+...+..|.|.++.+ .|.+
T Consensus 234 ~~~~l~~~---~~~~~~~~~-~~~~~~~~~~~~~~~lp~~l~~~~g~s 277 (432)
T PRK10406 234 SLKGLWRN---RRAFIMVLG-FTAAGSLCFYTFTTYMQKYLVNTAGMH 277 (432)
T ss_pred cHHHHHhh---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46666653 222223222 2222233445566788888865 5765
No 60
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=21.37 E-value=3.3e+02 Score=19.75 Aligned_cols=42 Identities=7% Similarity=-0.031 Sum_probs=22.8
Q ss_pred hHHHhhhcCChhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHh-cCCC
Q psy5075 27 HWKKFELRSPTGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRN-AGTR 73 (91)
Q Consensus 27 ~~~~lf~~~~~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~-~g~~ 73 (91)
...++++.|+.+.-++...+..-.+-. +..+.+..+.+ .|.+
T Consensus 228 ~~~~l~~~~~~~~gvl~~FlYVG~Eva-----~gsfl~~y~~~~~g~~ 270 (422)
T COG0738 228 GLSSLFQNKHLRLGVLAIFLYVGAEVA-----IGSFLVSYLEELLGLN 270 (422)
T ss_pred hHHHHHhChHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHhcCCcc
Confidence 356678877766655443332222223 44556666666 5654
No 61
>KOG0319|consensus
Probab=20.61 E-value=1.5e+02 Score=23.00 Aligned_cols=33 Identities=9% Similarity=0.026 Sum_probs=15.2
Q ss_pred hhhhhhhhhhhhhhhHHHhhhcCChhHHHHHHH
Q psy5075 13 KEDFEGNCFVKLWEHWKKFELRSPTGKAIGIIM 45 (91)
Q Consensus 13 ~~~~ei~~~~~~~~~~~~lf~~~~~~~~~~i~~ 45 (91)
+|.+..++.++.+...-.++.++++.+.+.+++
T Consensus 626 ee~~K~~eaieq~QeL~n~l~~~~~~~A~~LA~ 658 (775)
T KOG0319|consen 626 EEQEKREEAIEQEQELENLLSQKRYTKAFVLAL 658 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHh
Confidence 334434444444444444555555555544443
No 62
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=20.48 E-value=1.7e+02 Score=21.38 Aligned_cols=24 Identities=4% Similarity=-0.243 Sum_probs=11.8
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHhhh
Q psy5075 29 KKFELRSPTGKAIGIIMGLMTFQRFS 54 (91)
Q Consensus 29 ~~lf~~~~~~~~~~i~~~~~~~~q~~ 54 (91)
.++|+.|. ++.+.+..+-..-|+.
T Consensus 252 gDVFR~P~--~~~lls~lvG~G~Qll 275 (521)
T PF02990_consen 252 GDVFRPPK--HPMLLSALVGTGIQLL 275 (521)
T ss_pred HHHhcCcC--CchHHHhHhcchhhhh
Confidence 35777665 3444444444444443
No 63
>PRK11043 putative transporter; Provisional
Probab=20.39 E-value=2.8e+02 Score=18.65 Aligned_cols=43 Identities=12% Similarity=-0.023 Sum_probs=21.4
Q ss_pred hhHHHhhhcCChhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHhcCCC
Q psy5075 26 EHWKKFELRSPTGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRNAGTR 73 (91)
Q Consensus 26 ~~~~~lf~~~~~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~~g~~ 73 (91)
.++++++++|.++..+++... ...+......+.|.+++..|.+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~g~s 236 (401)
T PRK11043 194 LTFKQLLKSKTYLGNVLIFAA-----CSAAFFAWLTGSPFILEQMGYS 236 (401)
T ss_pred HHHHHHHcChhHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHcCCC
Confidence 356667776654433322111 1122334455667777776664
No 64
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic. This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
Probab=20.13 E-value=1.1e+02 Score=21.93 Aligned_cols=30 Identities=7% Similarity=0.082 Sum_probs=20.4
Q ss_pred hHHHhHHHHHHhcCCCCChhHHHHHHHHHHh
Q psy5075 58 ALIYYTVDIFRNAGTRIAPSTASIIVGAVQV 88 (91)
Q Consensus 58 ~i~~y~~~il~~~g~~~~~~~~~~~~~~~~~ 88 (91)
.+.+|+..++...|++ ...+.+.++++.+.
T Consensus 370 NVD~~sg~l~~~lGip-~~~~~t~lFavsR~ 399 (427)
T TIGR01793 370 NVDAHSGVLLQYYGLT-EARYYTVLFGVSRA 399 (427)
T ss_pred CcHHHHHHHHHHcCCC-chhhhhhHhhhhcc
Confidence 6889999999999996 33334444444443
Done!