Query psy5075
Match_columns 91
No_of_seqs 109 out of 1071
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 16:36:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5075.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5075hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 97.0 0.0018 6.3E-08 43.4 6.1 52 37-88 274-326 (491)
2 1pw4_A Glycerol-3-phosphate tr 83.3 1.3 4.4E-05 29.0 3.6 26 48-73 260-286 (451)
3 3o7q_A L-fucose-proton symport 79.1 4.9 0.00017 26.1 5.3 44 25-73 248-293 (438)
4 2ifc_A Citrate synthase; oxalo 21.5 75 0.0026 21.4 2.8 32 58-89 316-347 (385)
5 1csh_A Citrate synthase; lyase 21.2 1.1E+02 0.0038 21.0 3.6 31 57-88 370-400 (435)
6 2h12_A Citrate synthase; acido 18.1 1.3E+02 0.0046 20.6 3.5 30 58-89 369-398 (436)
7 2p2w_A Citrate synthase; trans 16.5 1.8E+02 0.0063 19.4 3.8 29 58-88 298-326 (367)
8 3tqg_A 2-methylcitrate synthas 16.3 1.9E+02 0.0063 19.5 3.8 33 54-88 304-337 (375)
9 1vgp_A 373AA long hypothetical 16.1 1.9E+02 0.0064 19.3 3.8 29 58-88 308-336 (373)
10 1iom_A Citrate synthase; open 15.5 2E+02 0.0068 19.3 3.8 30 57-88 309-338 (377)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.00 E-value=0.0018 Score=43.42 Aligned_cols=52 Identities=29% Similarity=0.540 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHhhhchhhHHHhHHHHHHhcCCCC-ChhHHHHHHHHHHh
Q psy5075 37 TGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRNAGTRI-APSTASIIVGAVQV 88 (91)
Q Consensus 37 ~~~~~~i~~~~~~~~q~~G~~~i~~y~~~il~~~g~~~-~~~~~~~~~~~~~~ 88 (91)
.++++.+++....++|++|.+.+.+|.+.+++..+.+. +....+.+.+++.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (491)
T 4gc0_A 274 GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINL 326 (491)
T ss_dssp CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHH
Confidence 44567788888999999999999999999999988752 22333444444433
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=83.26 E-value=1.3 Score=28.98 Aligned_cols=26 Identities=0% Similarity=-0.031 Sum_probs=17.5
Q ss_pred HHHHhhhchhhHHHhHHHHHHh-cCCC
Q psy5075 48 MTFQRFSGVSALIYYTVDIFRN-AGTR 73 (91)
Q Consensus 48 ~~~~q~~G~~~i~~y~~~il~~-~g~~ 73 (91)
..+....+...+..|.|.++++ .|.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~g~~ 286 (451)
T 1pw4_A 260 ANVFVYLLRYGILDWSPTYLKEVKHFA 286 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTTBSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3334445566677888988887 6765
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=79.07 E-value=4.9 Score=26.11 Aligned_cols=44 Identities=9% Similarity=-0.001 Sum_probs=23.8
Q ss_pred hhhHHHhhhcCChhHHHHHHHHHHHHHhhhchhhHHHhHHHH-HHhc-CCC
Q psy5075 25 WEHWKKFELRSPTGKAIGIIMGLMTFQRFSGVSALIYYTVDI-FRNA-GTR 73 (91)
Q Consensus 25 ~~~~~~lf~~~~~~~~~~i~~~~~~~~q~~G~~~i~~y~~~i-l~~~-g~~ 73 (91)
..++++++++|..+.-. ++.... ..+...+..|.|.+ +++. |.+
T Consensus 248 ~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~ 293 (438)
T 3o7q_A 248 SASLSRLARIRHWRWAV-LAQFCY----VGAQTACWSYLIRYAVEEIPGMT 293 (438)
T ss_dssp HHHHHHHTTCSHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHSTTCC
T ss_pred hhhHHHHHhChHHHHHH-HHHHHH----HHHHHHHHHHHHHHhhhccCCcc
Confidence 34567788776544333 222222 22334456777877 7775 765
No 4
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=21.53 E-value=75 Score=21.40 Aligned_cols=32 Identities=9% Similarity=0.169 Sum_probs=22.1
Q ss_pred hHHHhHHHHHHhcCCCCChhHHHHHHHHHHhh
Q psy5075 58 ALIYYTVDIFRNAGTRIAPSTASIIVGAVQVF 89 (91)
Q Consensus 58 ~i~~y~~~il~~~g~~~~~~~~~~~~~~~~~v 89 (91)
.+.+|+..++..+|++.++...+.++++.+.+
T Consensus 316 NVD~~sg~v~~~lGip~~~~~~t~lF~isR~~ 347 (385)
T 2ifc_A 316 NTDYFSGIVYMSIGFPLRNNIYTALFALSRVT 347 (385)
T ss_dssp CTTTTHHHHHHHHTCCSGGGHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCcchhhhhhHHHHhhcc
Confidence 57799999999999975234445555555544
No 5
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Probab=21.22 E-value=1.1e+02 Score=20.99 Aligned_cols=31 Identities=6% Similarity=0.074 Sum_probs=20.1
Q ss_pred hhHHHhHHHHHHhcCCCCChhHHHHHHHHHHh
Q psy5075 57 SALIYYTVDIFRNAGTRIAPSTASIIVGAVQV 88 (91)
Q Consensus 57 ~~i~~y~~~il~~~g~~~~~~~~~~~~~~~~~ 88 (91)
..+.+|+..++..+|++ .....+.++++.+.
T Consensus 370 pNVDf~sg~i~~~lGip-p~~~ft~lFaisR~ 400 (435)
T 1csh_A 370 PNVDAHSGVLLQYYGMT-EMNYYTVLFGVSRA 400 (435)
T ss_dssp BCTHHHHHHHHHHTTCC-CGGGHHHHHHHHHH
T ss_pred CChHHHHHHHHHHcCCC-hhhcccchhhhhhh
Confidence 35789999999999994 23333444444443
No 6
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti}
Probab=18.06 E-value=1.3e+02 Score=20.61 Aligned_cols=30 Identities=10% Similarity=0.256 Sum_probs=20.4
Q ss_pred hHHHhHHHHHHhcCCCCChhHHHHHHHHHHhh
Q psy5075 58 ALIYYTVDIFRNAGTRIAPSTASIIVGAVQVF 89 (91)
Q Consensus 58 ~i~~y~~~il~~~g~~~~~~~~~~~~~~~~~v 89 (91)
.+.+|+..++..+|++.+ ..+.++++.+++
T Consensus 369 NVDfysg~i~~~lGiP~~--~ft~lFaisR~~ 398 (436)
T 2h12_A 369 NVDFYSGIILKAMGIPTS--MFTVLFAVARTT 398 (436)
T ss_dssp CTHHHHHHHHHHTTCCGG--GHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCCChh--hhhhhhhhhccc
Confidence 578999999999999633 334444444443
No 7
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima}
Probab=16.46 E-value=1.8e+02 Score=19.37 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=19.7
Q ss_pred hHHHhHHHHHHhcCCCCChhHHHHHHHHHHh
Q psy5075 58 ALIYYTVDIFRNAGTRIAPSTASIIVGAVQV 88 (91)
Q Consensus 58 ~i~~y~~~il~~~g~~~~~~~~~~~~~~~~~ 88 (91)
.+.+|+..++..+|++.+ ..+.++++.+.
T Consensus 298 NVDf~sg~v~~~lGip~~--~~t~lFai~R~ 326 (367)
T 2p2w_A 298 NVDLYSSVLFEELGFPRN--MFTALFATARV 326 (367)
T ss_dssp CHHHHHHHHHHHTTCCGG--GHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCCChh--hhhhHHHHhcc
Confidence 588999999999999633 33444444443
No 8
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0
Probab=16.33 E-value=1.9e+02 Score=19.47 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=21.4
Q ss_pred hchh-hHHHhHHHHHHhcCCCCChhHHHHHHHHHHh
Q psy5075 54 SGVS-ALIYYTVDIFRNAGTRIAPSTASIIVGAVQV 88 (91)
Q Consensus 54 ~G~~-~i~~y~~~il~~~g~~~~~~~~~~~~~~~~~ 88 (91)
-|.. .+.+|+..++..+|++. ...+.++++.+.
T Consensus 304 k~l~pNVDf~sg~i~~~lGip~--~~~t~lFa~sR~ 337 (375)
T 3tqg_A 304 KKLFPNLDFYSATAYHFLNIPT--KLFTPIFVMSRV 337 (375)
T ss_dssp HCCCBCHHHHHHHHHHHTTCCG--GGHHHHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHcCCCH--HHHHHHHHHHhH
Confidence 3444 48899999999999963 333444444443
No 9
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=16.13 E-value=1.9e+02 Score=19.35 Aligned_cols=29 Identities=10% Similarity=0.225 Sum_probs=19.8
Q ss_pred hHHHhHHHHHHhcCCCCChhHHHHHHHHHHh
Q psy5075 58 ALIYYTVDIFRNAGTRIAPSTASIIVGAVQV 88 (91)
Q Consensus 58 ~i~~y~~~il~~~g~~~~~~~~~~~~~~~~~ 88 (91)
.+.+|+..++..+|++.+ ..+.++++.+.
T Consensus 308 NVDf~sg~i~~~lGip~~--~~t~lFaisR~ 336 (373)
T 1vgp_A 308 NVDFFSSIVFYSLGFEPD--FFPAVFASARV 336 (373)
T ss_dssp CHHHHHHHHHHHTTCCGG--GHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCHH--hhhhhHHhhcc
Confidence 578999999999999633 33444444443
No 10
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=15.48 E-value=2e+02 Score=19.27 Aligned_cols=30 Identities=10% Similarity=0.292 Sum_probs=20.0
Q ss_pred hhHHHhHHHHHHhcCCCCChhHHHHHHHHHHh
Q psy5075 57 SALIYYTVDIFRNAGTRIAPSTASIIVGAVQV 88 (91)
Q Consensus 57 ~~i~~y~~~il~~~g~~~~~~~~~~~~~~~~~ 88 (91)
..+.+|+..++..+|++.+ ..+.++++.+.
T Consensus 309 pNVD~~sg~i~~~lG~p~~--~~t~lF~i~R~ 338 (377)
T 1iom_A 309 PNVDFYSGVVYSDLGFSLE--FFTPIFAVARI 338 (377)
T ss_dssp BCHHHHHHHHHHHTTCCGG--GHHHHHHHHHH
T ss_pred CChHHHHHHHHHHcCCCHH--hhhhHHHHhcc
Confidence 3588999999999999633 33344444443
Done!