RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5075
(91 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.028
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 31/97 (31%)
Query: 4 DGEDKRASSKEDFEG--NCFVKLWEHWKKFELRSPT-------GKAIGIIMGLMTFQRFS 54
DG D R S E +C ++L W+ T G A S
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGA-------------S 510
Query: 55 GVSALIYYTVDIFRNAGTRIAPSTASIIVGAVQVFSN 91
G+ L + D G R+ I+ G + + +
Sbjct: 511 GLGVLTHRNKD---GTGVRV------IVAGTLDINPD 538
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 0.43
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 16/57 (28%)
Query: 6 EDKRASSKEDFEGNCFVKL---W--EHWKKFELRSPTGKAIGIIMGLMTFQRFSGVS 57
E +R + +E NC + L + W F L L+T RF V+
Sbjct: 233 ELRRLLKSKPYE-NCLLVLLNVQNAKAWNAFNLSCKI---------LLT-TRFKQVT 278
Score = 25.2 bits (54), Expect = 3.9
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 20/69 (28%)
Query: 21 FVKLWEHWKKFELRSPTGKAIGIIMGLMTFQRFSGVSAL-------IYYTVDIFRNAGTR 73
+ W++WK + I+ S ++ L ++ + +F
Sbjct: 340 GLATWDNWKHVNC-----DKLTTIIE-------SSLNVLEPAEYRKMFDRLSVFPP-SAH 386
Query: 74 IAPSTASII 82
I S+I
Sbjct: 387 IPTILLSLI 395
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 26.0 bits (58), Expect = 1.9
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 17 EGNCFVK--LWEHWKKFELRSPTGKAIGII-MG 46
E + +V+ W+ +GK +GII +G
Sbjct: 141 ECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLG 173
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A
{Methanothermobacterthermautotrophicus} SCOP: c.53.2.1
Length = 170
Score = 25.8 bits (57), Expect = 1.9
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 66 IFRNAGTRIAPSTASIIVGAVQV 88
+ +NAG + A+
Sbjct: 54 VIKNAGNIVDDGVIRSAAVAIYA 76
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide
transport, major facilitator SUPE transporter, MFS;
3.30A {Streptococcus thermophilus}
Length = 491
Score = 25.5 bits (56), Expect = 3.1
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 21 FVKLWEHWKKFELRSPTGKAIGIIMGLMTFQRFSGVSALIYYTVDIFRNAGTRIAP 76
F LW WKK + SPT A+G++ F+G+S L+ +++P
Sbjct: 339 FAWLWTAWKKNQPSSPTKFAVGLM--------FAGLSFLLMAIPGALYGTSGKVSP 386
Score = 25.1 bits (55), Expect = 3.9
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 39 KAIGIIMGLMTFQRFS--GVSA-LIYYTVDIFRNAGTRIAPSTASIIVGA 85
+ + ++RFS G+ A L+YY + I +TA+ I+
Sbjct: 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAI 62
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis,
sulfur oxidation pathway, Cys S-thiosulfonate,
hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A*
2wde_A 2wdf_A
Length = 562
Score = 25.2 bits (55), Expect = 3.6
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 4/25 (16%)
Query: 50 FQRFSGVSALIYYTVDIFRNAGTRI 74
R G+ Y +D G R+
Sbjct: 466 VSRVFGLR----YVLDPDAPTGERV 486
>3qfk_A Uncharacterized protein; structural genomics, center for structural
genomics of infec diseases, csgid, phosphoesterase,
hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus
subsp}
Length = 527
Score = 24.6 bits (54), Expect = 5.5
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 49 TFQRFSGVSALIYYTVDIFRNAGTRI 74
+ + GVS YT+ + R G R+
Sbjct: 433 NYDIYGGVS----YTIHVGRPKGQRV 454
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 24.1 bits (53), Expect = 7.1
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 4/23 (17%)
Query: 25 WEHWKKFELRSPTGKAIGII-MG 46
+ L GKA+GI+ G
Sbjct: 112 FRQSPTTLL---YGKALGILGYG 131
>3teo_A Carbon disulfide hydrolase; beta carbonic anhydrase fold, carbon
disulfide hydrolysis; HET: PE3; 2.40A {Acidianus SP}
PDB: 3ten_A*
Length = 204
Score = 23.8 bits (51), Expect = 9.0
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 66 IFRNAGTRIAPSTASIIVGAVQVF 89
I+RNAG + F
Sbjct: 55 IYRNAGGIVTDDAIRSASLTTNFF 78
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 23.8 bits (52), Expect = 9.5
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 7/29 (24%)
Query: 25 WEHWKKFEL------RSPTGKAIGII-MG 46
E + + L +P G +G + +G
Sbjct: 144 PETFNRVHLEIGKSAHNPRGHVLGAVGLG 172
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.410
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,411,837
Number of extensions: 71872
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 16
Length of query: 91
Length of database: 6,701,793
Length adjustment: 58
Effective length of query: 33
Effective length of database: 5,082,375
Effective search space: 167718375
Effective search space used: 167718375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.5 bits)