BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5076
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 258 bits (659), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 136/295 (46%), Positives = 180/295 (61%), Gaps = 34/295 (11%)
Query: 1 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
M G FD +R+SWY+G ++RQEA A+L ++ +G FLVRDS+T G+YVL V EN++VSH
Sbjct: 1 MAGNFDSEERSSWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSH 59
Query: 61 YIINKITNTEQQ-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 107
YIIN + +IGD+ F LP+LL FYK+HYLDT+ LI+P +
Sbjct: 60 YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS 119
Query: 108 KT------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV 155
++ E V A +DF+GND +DLPFKK DIL + K EE WW A++ G+
Sbjct: 120 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 179
Query: 156 GSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVP--QQQTTPVRKTHLEVKLP------AF 207
G IPVPYV+KY + +S SH P + P + + LP +
Sbjct: 180 GMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIY 239
Query: 208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV +
Sbjct: 240 ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 294
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 257 bits (657), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 141/303 (46%), Positives = 186/303 (61%), Gaps = 46/303 (15%)
Query: 2 TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
+ FD DR++WY G ++RQEAQ L ++ +G FLVRDS+T G+YVL V EN++VSHY
Sbjct: 3 SARFDSSDRSAWYMGPVSRQEAQTRLQGQR-HGMFLVRDSSTCPGDYVLSVSENSRVSHY 61
Query: 62 IINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK------------- 108
IIN + N +KIGD+ F LP+LL FYK+HYLDT+ LI+PA +
Sbjct: 62 IINSLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPN 117
Query: 109 ------TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
+E V YDF GND +DLPFKK +IL+++ K EE WW+A+N G VG IPVPY
Sbjct: 118 LPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPY 177
Query: 163 VQKYSEGMSILSLRNLHLDSSSHHVPQ--------QQTTPVRKTHLEVKL---------- 204
V+K S ++ + +S+S+ +P+ Q TTP+
Sbjct: 178 VEKLVR--SSPHGKHGNRNSNSYGIPEPAHAXAQPQTTTPLPAVSGSPGAAITPLPSTQN 235
Query: 205 -PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-FI 262
P FA+ Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ F
Sbjct: 236 GPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFD 295
Query: 263 PTN 265
P N
Sbjct: 296 PQN 298
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 257 bits (656), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 141/303 (46%), Positives = 186/303 (61%), Gaps = 46/303 (15%)
Query: 2 TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
+ FD DR++WY G ++RQEAQ L ++ +G FLVRDS+T G+YVL V EN++VSHY
Sbjct: 3 SARFDSSDRSAWYMGPVSRQEAQTRLQGQR-HGMFLVRDSSTCPGDYVLSVSENSRVSHY 61
Query: 62 IINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK------------- 108
IIN + N +KIGD+ F LP+LL FYK+HYLDT+ LI+PA +
Sbjct: 62 IINSLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPN 117
Query: 109 ------TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
+E V YDF GND +DLPFKK +IL+++ K EE WW+A+N G VG IPVPY
Sbjct: 118 LPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPY 177
Query: 163 VQKYSEGMSILSLRNLHLDSSSHHVPQ--------QQTTPVRKTHLEVKL---------- 204
V+K S ++ + +S+S+ +P+ Q TTP+
Sbjct: 178 VEKLVR--SSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQN 235
Query: 205 -PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-FI 262
P FA+ Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ F
Sbjct: 236 GPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFD 295
Query: 263 PTN 265
P N
Sbjct: 296 PQN 298
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 177 bits (450), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 89/191 (46%), Positives = 120/191 (62%), Gaps = 26/191 (13%)
Query: 1 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
M G FD +R+SWY+G ++RQEA A+L ++ +G FLVRDS+T G+YVL V EN++VSH
Sbjct: 3 MAGNFDSEERSSWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSH 61
Query: 61 YIINKITNTEQQ-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 107
YIIN + +IGD+ F LP+LL FYK+HYLDT+ LI+P +
Sbjct: 62 YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS 121
Query: 108 KT------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV 155
++ E V A +DF+GND +DLPFKK DIL + K EE WW A++ G+
Sbjct: 122 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 181
Query: 156 GSIPVPYVQKY 166
G IPVPYV+KY
Sbjct: 182 GMIPVPYVEKY 192
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 177 bits (448), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 89/191 (46%), Positives = 120/191 (62%), Gaps = 26/191 (13%)
Query: 1 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
M G FD +R+SWY+G ++RQEA A+L ++ +G FLVRDS+T G+YVL V EN++VSH
Sbjct: 1 MAGNFDSEERSSWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSH 59
Query: 61 YIINKITNTEQQ-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 107
YIIN + +IGD+ F LP+LL FYK+HYLDT+ LI+P +
Sbjct: 60 YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS 119
Query: 108 KT------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV 155
++ E V A +DF+GND +DLPFKK DIL + K EE WW A++ G+
Sbjct: 120 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 179
Query: 156 GSIPVPYVQKY 166
G IPVPYV+KY
Sbjct: 180 GMIPVPYVEKY 190
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 157 bits (397), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 103/161 (63%), Gaps = 8/161 (4%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169
+E V A +DF+GND +DLPFKK DIL + K EE WW A+++ G+ G IPVPYV+K
Sbjct: 1 VEYVRALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYVEKCRPS 60
Query: 170 MSILSLRNLHLDSSSHHVP--QQQTTPVRKTHLEVKLPA------FARVKQVRVPNAYDK 221
+ +S SSH P + P + + LP +ARV Q RVPNAYDK
Sbjct: 61 SASVSTLTGGNQDSSHPQPLGGPEPGPYAQPSINTPLPNLQNGPFYARVIQKRVPNAYDK 120
Query: 222 TALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
TAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV +
Sbjct: 121 TALALEVGELVKVTKINMSGQWEGECNGKRGHFPFTHVRLL 161
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTNETSVETNGNG 275
N D L + GDI+K+ W E ++GK G P +VE + SV T G
Sbjct: 11 NGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYVEKCRPSSASVSTLTGG 70
Query: 276 DIHNSTPK 283
+ +S P+
Sbjct: 71 NQDSSHPQ 78
>pdb|3QWY|A Chain A, Ced-2
pdb|3QWY|B Chain B, Ced-2
Length = 308
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 144/287 (50%), Gaps = 32/287 (11%)
Query: 2 TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKE---NNK 57
T FDP + S+YF M+R+EA +L + + G FL+RDS+ G Y L V+E N
Sbjct: 32 TNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRP-GEYSLTVREADEGNA 90
Query: 58 VSHYIINKITNTEQQTC---YKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK-TIEKV 113
V HY+I + E T KI +++F D+P+LL +K+ L + L+ K IE V
Sbjct: 91 VCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVV 150
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSIL 173
+ + F G DLPF++ + L ++SK + WW A+N G G +P YVQ E
Sbjct: 151 VGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQME----- 205
Query: 174 SLRNLHLDSSSHHVP--------------QQQTTPVRKTHLEVKLPAFARVKQVRVPNAY 219
H D +S +T L+ +LPA A+V RVPNAY
Sbjct: 206 ----FHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAY 261
Query: 220 DKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE 266
D T L+++ G + VT+ NG ++ EL+G+ G P T++ F +E
Sbjct: 262 DPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAVSE 308
>pdb|2EO3|A Chain A, Solution Structure Of The Sh2 Domain From Human Crk-Like
Protein
Length = 111
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 76/106 (71%), Gaps = 5/106 (4%)
Query: 3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYI 62
FD DR++WY G ++RQEAQ L ++ +G FLVRDS+T G+YVL V EN++VSHYI
Sbjct: 11 ARFDSSDRSAWYMGPVSRQEAQTRLQGQR-HGMFLVRDSSTCPGDYVLSVSENSRVSHYI 69
Query: 63 INKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 108
IN + N +KIGD+ F LP+LL FYK+HYLDT+ LI+PA +
Sbjct: 70 INSLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPR 111
>pdb|2EYV|A Chain A, Sh2 Domain Of Ct10-Regulated Kinase
Length = 124
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 76/117 (64%), Gaps = 14/117 (11%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
D +R+SWY+G ++RQEA A+L ++ +G FLVRDS+T G+YVL V EN++VSHYIIN
Sbjct: 5 DSEERSSWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSHYIINS 63
Query: 66 ITNTEQQ-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKT 109
+ +IGD+ F LP+LL FYK+HYLDT+ LI+P +++
Sbjct: 64 SGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRS 120
>pdb|3QWX|X Chain X, Ced-2 1-174
Length = 174
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 94/171 (54%), Gaps = 9/171 (5%)
Query: 2 TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVKE---NNK 57
T FDP + S+YF M+R+EA +L + + G FL+RDS+ G Y L V+E N
Sbjct: 3 TNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRP-GEYSLTVREADEGNA 61
Query: 58 VSHYIINKITNTEQQTC---YKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK-TIEKV 113
V HY+I + E T KI +++F D+P+LL +K+ L + L+ K IE V
Sbjct: 62 VCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVV 121
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+ + F G DLPF++ + L ++SK + WW A+N G G +P YVQ
Sbjct: 122 VGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQ 172
>pdb|1JU5|A Chain A, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 109
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 71/110 (64%), Gaps = 14/110 (12%)
Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
SWY+G ++RQEA A+L ++ +G FLVRDS+T G+YVL V EN++VSHYIIN
Sbjct: 1 SWYWGRLSRQEAVALLQGQR-HGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPP 59
Query: 72 Q-------------TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 108
+ +IGD+ F LP+LL FYK+HYLDT+ LI+P ++
Sbjct: 60 VPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR 109
>pdb|2GGR|A Chain A, Solution Structure Of The C-Terminal Sh3 Domain Of C-Crkii
Length = 76
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 49/58 (84%)
Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
P +ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV +
Sbjct: 9 PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 66
>pdb|2EYX|A Chain A, C-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 67
Score = 95.9 bits (237), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/58 (70%), Positives = 49/58 (84%)
Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
P +ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV +
Sbjct: 6 PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 63
>pdb|2L3P|A Chain A, Structure Of The Prolyl Cis Isomer Of The Crk Protein
pdb|2L3Q|A Chain A, Structure Of The Prolyl Trans Isomer Of The Crk Protein
Length = 78
Score = 94.4 bits (233), Expect = 7e-20, Method: Composition-based stats.
Identities = 41/58 (70%), Positives = 49/58 (84%)
Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
P +ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV +
Sbjct: 19 PFYARVIQKRVPNAYDKTALALEVGELVKVTKINMSGQWEGECNGKRGHFPFTHVRLL 76
>pdb|2DBK|A Chain A, Solution Structures Of The Sh3 Domain Of Human Crk-Like
Protein
Length = 88
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-FIP 263
P FA+ Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ F P
Sbjct: 16 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP 75
Query: 264 TNETSVET 271
N E+
Sbjct: 76 QNPDENES 83
>pdb|2BZX|A Chain A, Atomic Model Of Crkl-Sh3c Monomer
pdb|2BZY|A Chain A, Dimeric Of Crkl-Sh3c Domain
pdb|2BZY|B Chain B, Dimeric Of Crkl-Sh3c Domain
Length = 67
Score = 91.7 bits (226), Expect = 4e-19, Method: Composition-based stats.
Identities = 43/62 (69%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE-FIP 263
P FA+ Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+ F P
Sbjct: 1 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP 60
Query: 264 TN 265
N
Sbjct: 61 QN 62
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 75.9 bits (185), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/64 (53%), Positives = 44/64 (68%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
E V A +DF+GND +DLPFKK DIL + K EE WW A++ G+ G IPVPYV+KY
Sbjct: 15 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS 74
Query: 171 SILS 174
+ +S
Sbjct: 75 ASVS 78
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 74.7 bits (182), Expect = 5e-14, Method: Composition-based stats.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
E V A +DF+GND +DLPFKK DIL + K EE WW A++ G+ G IPVPYV+KY
Sbjct: 4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 59
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene
Protein C-Crk
Length = 58
Score = 74.3 bits (181), Expect = 7e-14, Method: Composition-based stats.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
E V A +DF+GND +DLPFKK DIL + K EE WW A++ G+ G IPVPYV+KY
Sbjct: 2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 74.3 bits (181), Expect = 7e-14, Method: Composition-based stats.
Identities = 33/58 (56%), Positives = 42/58 (72%)
Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
+ E V A +DF+GND +DLPFKK DIL + K EE WW A++ G+ G IPVPYV+KY
Sbjct: 2 SAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 59
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
Length = 57
Score = 73.9 bits (180), Expect = 9e-14, Method: Composition-based stats.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
E V A +DF+GND +DLPFKK DIL + K EE WW A++ G+ G IPVPYV+KY
Sbjct: 2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 73.6 bits (179), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 40/54 (74%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
V A +DF+GND +DLPFKK DIL + K EE WW A++ G+ G IPVPYV+KY
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N-
Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 73.2 bits (178), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 40/54 (74%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
V A +DF+GND +DLPFKK DIL + K EE WW A++ G+ G IPVPYV+KY
Sbjct: 3 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 56
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 79/158 (50%), Gaps = 14/158 (8%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
W+FG + R +A+ +L ++ +GAFL+R+S + G++ L VK N V H+ + + +
Sbjct: 60 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR----DGA 115
Query: 73 TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEK-------VIAKYDFDGNDPD 125
Y + F+ L L+ +++ + + I + IE+ V A +DFD +
Sbjct: 116 GKYFLWVVKFNSLNELVDYHRSTSVSRNQQI--FLRDIEQVPQQPTYVQALFDFDPQEDG 173
Query: 126 DLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
+L F++ D + V+ + +WW G+ G P YV
Sbjct: 174 ELGFRRGDFIHVMDNSDPNWWKGA-CHGQTGMFPRNYV 210
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+ IAKYDF D+L FK+ DIL V++++ + W ++G+ G IP Y++
Sbjct: 2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 54
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
L GD I V + W+G +G+TG FP +V
Sbjct: 175 LGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210
>pdb|4F59|A Chain A, Triple Mutant Src Sh2 Domain
pdb|4F5A|A Chain A, Triple Mutant Src Sh2 Domain Bound To Phosphate Ion
pdb|4F5B|A Chain A, Triple Mutant Src Sh2 Domain Bound To Phosphotyrosine
Length = 112
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 3 GTFDPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK-- 57
G D WYFG +TR+E++ +LL +E G FLVR+S T+ G Y L V +N K
Sbjct: 1 GAMDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETVKGAYALSVSDFDNAKGL 60
Query: 58 -VSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
V HY+I K+ + Y F+ L L+A+Y H
Sbjct: 61 NVKHYLIRKL---DSGGFYITSRTQFNSLQQLVAYYSKH 96
>pdb|1BKM|A Chain A, Cocrystal Structure Of D-Amino Acid Substituted
Phosphopeptide Complex
Length = 113
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
WYFG +TR+E++A+LL+ E G FLVR+S T G Y L V +N K V HY I K+
Sbjct: 6 WYFGKITRRESEALLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 65
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
+ Y FS L L+A+Y H
Sbjct: 66 ---DSGGFYITSRTQFSSLQQLVAYYSKH 91
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 16/113 (14%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
WYFG +TR+E++ +LL+ E G FLVR+S T G Y L V +N K V HY I K+
Sbjct: 68 WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 127
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH-------YLDTSPLIKPATKTIEK 112
+ Y FS L L+A+Y H + P KP T+ + K
Sbjct: 128 ---DSGGFYITSRTQFSSLQQLVAYYSKHADGLCHRLTNVCPTSKPQTQGLAK 177
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
+A YD++ DL FKK + L +V+ E WW A ++ +G+ G IP YV
Sbjct: 7 VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 57
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 13 WYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
WYFG +TR+E++ +LL +E G FLVR+S T G Y L V +N K V HY I K+
Sbjct: 150 WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 209
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYK------VHYLDT-SPLIKPATKTIEK 112
+ Y F+ L L+A+Y H L T P KP T+ + K
Sbjct: 210 ---DSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAK 259
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 86 PSLLAFYKVHYLDTSP-LIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH 144
P L + TSP P + +A YD++ DL FKK + L +V+ E
Sbjct: 60 PKLFGGFNSSDTVTSPQRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGD 119
Query: 145 WWTAQNIS-GEVGSIPVPYV 163
WW A ++S G+ G IP YV
Sbjct: 120 WWLAHSLSTGQTGYIPSNYV 139
>pdb|1BKL|A Chain A, Self-Associated Apo Src Sh2 Domain
Length = 113
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
WYFG +TR+E++++LL+ E G FLVR+S T G Y L V +N K V HY I K+
Sbjct: 6 WYFGKITRRESESLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 65
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
+ Y FS L L+A+Y H
Sbjct: 66 ---DSGGFYITSRTQFSSLQQLVAYYSKH 91
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VS 59
D WYFG +TR+E++ +LL +E G FLVR+S T G Y L V +N K V
Sbjct: 60 DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVK 119
Query: 60 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK------VHYLDT-SPLIKPATKTIEK 112
HY I K+ + Y F+ L L+A+Y H L T P KP T+ + K
Sbjct: 120 HYKIRKL---DSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAK 176
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYV 163
+A YD++ DL FKK + L +V+ E WW A ++S G+ G IP YV
Sbjct: 6 VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VS 59
D WYFG +TR+E++ +LL +E G FLVR+S T G Y L V +N K V
Sbjct: 60 DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVK 119
Query: 60 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK------VHYLDT-SPLIKPATKTIEK 112
HY I K+ + Y F+ L L+A+Y H L T P KP T+ + K
Sbjct: 120 HYKIRKL---DSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAK 176
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYV 163
+A YD++ DL FKK + L +V+ E WW A ++S G+ G IP YV
Sbjct: 6 VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VS 59
D WYFG +TR+E++ +LL +E G FLVR+S T G Y L V +N K V
Sbjct: 60 DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVK 119
Query: 60 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK------VHYLDT-SPLIKPATKTIEK 112
HY I K+ + Y F+ L L+A+Y H L T P KP T+ + K
Sbjct: 120 HYKIRKL---DSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAK 176
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYV 163
+A YD++ DL FKK + L +V+ E WW A ++S G+ G IP YV
Sbjct: 6 VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1SKJ|A Chain A, Cocrystal Structure Of Urea-Substituted Phosphopeptide
Complex
Length = 113
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
WYFG +TR+E++ +LL+ E G FLVR+S T G Y L V +N K V HY I K+
Sbjct: 6 WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 65
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
+ Y FS L L+A+Y H
Sbjct: 66 ---DSGGFYITSRTQFSSLQQLVAYYSKH 91
>pdb|1IS0|A Chain A, Crystal Structure Of A Complex Of The Src Sh2 Domain
With Conformationally Constrained Peptide Inhibitor
pdb|1IS0|B Chain B, Crystal Structure Of A Complex Of The Src Sh2 Domain
With Conformationally Constrained Peptide Inhibitor
pdb|2JYQ|A Chain A, Nmr Structure Of The Apo V-Src Sh2 Domain
Length = 106
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
WYFG +TR+E++ +LL+ E G FLVR+S T G Y L V +N K V HY I K+
Sbjct: 5 WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 64
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
+ Y FS L L+A+Y H
Sbjct: 65 ---DSGGFYITSRTQFSSLQQLVAYYSKH 90
>pdb|1KC2|A Chain A, Structure Of The Triple (Lys(Beta)d3ala, Asp(Beta)c8ala,
Aspcd2ala) Mutant Of The Src Sh2 Domain Bound To The
Pqpyeeipi Peptide
Length = 103
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
WYFG +TR+E++ +LL+ E G FLVR+S T G Y L V N K V+HY I K+
Sbjct: 4 WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSAFANAKGLNVAHYKIRKL 63
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
+ Y FS L L+A+Y H
Sbjct: 64 ---DSGGFYITSRTQFSSLQQLVAYYSKH 89
>pdb|1SHA|A Chain A, Crystal Structure Of The Phosphotyrosine Recognition
Domain Sh2 Of V-Src Complexed With
Tyrosine-Phosphorylated Peptides
pdb|1SHB|A Chain A, Crystal Structure Of The Phosphotyrosine Recognition
Domain Sh2 Of V-Src Complexed With
Tyrosine-Phosphorylated Peptides
pdb|1SPR|A Chain A, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|B Chain B, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|C Chain C, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPR|D Chain D, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|A Chain A, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|B Chain B, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
pdb|1SPS|C Chain C, Binding Of A High Affinity Phosphotyrosyl Peptide To The
Src Sh2 Domain: Crystal Structures Of The Complexed And
Peptide-Free Forms
Length = 104
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
WYFG +TR+E++ +LL+ E G FLVR+S T G Y L V +N K V HY I K+
Sbjct: 5 WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 64
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
+ Y FS L L+A+Y H
Sbjct: 65 ---DSGGFYITSRTQFSSLQQLVAYYSKH 90
>pdb|1NZL|A Chain A, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyepyipi
pdb|1NZL|B Chain B, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyepyipi
pdb|1NZV|A Chain A, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyipyvpa
pdb|1NZV|B Chain B, Crystal Structure Of Src Sh2 Domain Bound To Doubly
Phosphorylated Peptide Pqpyipyvpa
Length = 103
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
WYFG +TR+E++ +LL+ E G FLVR+S T G Y L V +N K V HY I K+
Sbjct: 4 WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 63
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
+ Y FS L L+A+Y H
Sbjct: 64 ---DSGGFYITSRTQFSSLQQLVAYYSKH 89
>pdb|1P13|A Chain A, Crystal Structure Of The Src Sh2 Domain Complexed With
Peptide (Sdpyanfk)
pdb|1P13|B Chain B, Crystal Structure Of The Src Sh2 Domain Complexed With
Peptide (Sdpyanfk)
Length = 102
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
WYFG +TR+E++ +LL+ E G FLVR+S T G Y L V +N K V HY I K+
Sbjct: 4 WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 63
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
+ Y FS L L+A+Y H
Sbjct: 64 ---DSGGFYITSRTQFSSLQQLVAYYSKH 89
>pdb|1F1W|A Chain A, Src Sh2 Thref1trp Mutant Complexed With The
Phosphopeptide S(Ptr)vnvqn
pdb|1F2F|A Chain A, Src Sh2 Thref1trp Mutant
Length = 104
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 11/90 (12%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
WYFG +TR+E++ +LL+ E G FLVR+S T G Y L V +N K V HY I K+
Sbjct: 5 WYFGKITRRESERLLLNPENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 64
Query: 67 TNTEQQTCYKIGDKT-FSDLPSLLAFYKVH 95
+ + I +T FS L L+A+Y H
Sbjct: 65 DSGG----FYIWSRTQFSSLQQLVAYYSKH 90
>pdb|1O41|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78300.
pdb|1O42|A Chain A, Crystal Structure Of Sh2 In Complex With Ru81843.
pdb|1O43|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82129.
pdb|1O44|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85052
pdb|1O45|A Chain A, Crystal Structure Of Sh2 In Complex With Ru84687.
pdb|1O46|A Chain A, Crystal Structure Of Sh2 In Complex With Ru90395.
pdb|1O47|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82209.
pdb|1O48|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85053.
pdb|1O49|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85493.
pdb|1O4A|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82197.
pdb|1O4B|A Chain A, Crystal Structure Of Sh2 In Complex With Ru83876.
pdb|1O4D|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78262.
pdb|1O4E|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78299.
pdb|1O4H|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79072.
pdb|1O4I|A Chain A, Crystal Structure Of Sh2 In Complex With Pas219.
pdb|1O4J|A Chain A, Crystal Structure Of Sh2 In Complex With Iso24.
pdb|1O4K|A Chain A, Crystal Structure Of Sh2 In Complex With Pasbn.
pdb|1O4L|A Chain A, Crystal Structure Of Sh2 In Complex With Fragment2.
pdb|1O4M|A Chain A, Crystal Structure Of Sh2 In Complex With Malonicacid.
pdb|1O4N|A Chain A, Crystal Structure Of Sh2 In Complex With Oxalic Acid.
pdb|1O4O|A Chain A, Crystal Structure Of Sh2 In Complex With
Phenylphosphate.
pdb|1O4P|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78791.
pdb|1O4Q|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79256.
pdb|1O4R|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78783
Length = 108
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
WYFG +TR+E++ +LL +E G FLVR+S T G Y L V +N K V HY I K+
Sbjct: 7 WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 66
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
+ Y F+ L L+A+Y H
Sbjct: 67 ---DSGGFYITSRTQFNSLQQLVAYYSKH 92
>pdb|1O4C|A Chain A, Crystal Structure Of Sh2 In Complex With Phosphate.
pdb|1O4F|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79073.
pdb|1O4G|A Chain A, Crystal Structure Of Sh2 In Complex With Dpi59
Length = 108
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
WYFG +TR+E++ +LL +E G FLVR+S T G Y L V +N K V HY I K+
Sbjct: 7 WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYXLSVSDFDNAKGLNVKHYKIRKL 66
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
+ Y F+ L L+A+Y H
Sbjct: 67 ---DSGGFYITSRTQFNSLQQLVAYYSKH 92
>pdb|1SHD|A Chain A, Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein
Interactions
pdb|1HCT|B Chain B, Nmr Structure Of The Human Src Sh2 Domain Complex
pdb|1HCS|B Chain B, Nmr Structure Of The Human Src Sh2 Domain Complex
pdb|1A07|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Malonyl
Tyr-Glu-(N,N- Dipentyl Amine)
pdb|1A07|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Malonyl
Tyr-Glu-(N,N- Dipentyl Amine)
pdb|1A08|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Difluoro
Phosphotyr- Glu-(N,N-Dipentyl Amine)
pdb|1A08|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Difluoro
Phosphotyr- Glu-(N,N-Dipentyl Amine)
pdb|1A09|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Formyl
Phosphotyr-Glu- (N,N-Dipentyl Amine)
pdb|1A09|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Formyl
Phosphotyr-Glu- (N,N-Dipentyl Amine)
pdb|1A1B|A Chain A, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N,N- Dipentyl Amine)
pdb|1A1B|B Chain B, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N,N- Dipentyl Amine)
pdb|1A1C|A Chain A, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N-Me(- (Ch2)3-Cyclopentyl))
pdb|1A1C|B Chain B, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N-Me(- (Ch2)3-Cyclopentyl))
pdb|1A1E|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(3-
Butylpiperidine)
pdb|1A1E|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(3-
Butylpiperidine)
Length = 107
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
WYFG +TR+E++ +LL +E G FLVR+S T G Y L V +N K V HY I K+
Sbjct: 9 WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKL 68
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
+ Y F+ L L+A+Y H
Sbjct: 69 ---DSGGFYITSRTQFNSLQQLVAYYSKH 94
>pdb|1A1A|A Chain A, C-Src (Sh2 Domain With C188a Mutation) Complexed With
Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine)
pdb|1A1A|B Chain B, C-Src (Sh2 Domain With C188a Mutation) Complexed With
Ace-Formyl Phosphotyr-Glu-(N,N-Dipentyl Amine)
Length = 107
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK--ENNK---VSHYIINKI 66
WYFG +TR+E++ +LL +E G FLVR+S T G Y L V +N K V HY I K+
Sbjct: 9 WYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYSLSVSDFDNAKGLNVKHYKIRKL 68
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
+ Y F+ L L+A+Y H
Sbjct: 69 ---DSGGFYITSRTQFNSLQQLVAYYSKH 94
>pdb|2KK6|A Chain A, Solution Structure Of Sh2 Domain Of Proto-Oncogene
Tyrosine- Protein Kinase Fer From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr3461d
Length = 116
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
P WY G + R EAQ +L K G FLVR+S+ G YVL V + + H+II +
Sbjct: 13 PLAEQDWYHGAIPRIEAQELL---KKQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYV 69
Query: 67 TNTEQQTCYKIGDKTFSDLPSLL 89
N Y+ FS++P L+
Sbjct: 70 DN-----MYRFEGTGFSNIPQLI 87
>pdb|1JEG|A Chain A, Solution Structure Of The Sh3 Domain From C-Terminal Src
Kinase Complexed With A Peptide From The Tyrosine
Phosphatase Pep
Length = 83
Score = 51.6 bits (122), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 103 IKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVP 161
I+ A + + IAKY+F G DLPF K D+L +V+ + +W+ A+N G G IP
Sbjct: 4 IQAAWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPAN 63
Query: 162 YVQK 165
YVQK
Sbjct: 64 YVQK 67
>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin
Length = 68
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
T E+ IA DF DL FKK +IL+V+ K + WW A++ G G +P Y++ YSE
Sbjct: 9 TGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYSE 68
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE-HWWTAQNISGEVGSIPVPYVQK 165
+ IAKY+F G DLPF K D+L +V+ ++ +W+ A+N G G IP YVQK
Sbjct: 13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQK 67
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
W+ G +TR++A+ LL + G FLVR+S G+Y LCV KV HY I
Sbjct: 82 WFHGKITREQAER-LLYPPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRI 131
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 50.8 bits (120), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNG 275
L LE GDI+ + + G W G LNGK GHFP +VE +P+N + T +G
Sbjct: 24 LNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNAGNTATKASG 75
Score = 41.6 bits (96), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
A Y F D+L +K DI+I+ K EE WW +++G+ G P YV++
Sbjct: 12 ALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFG-SLNGKKGHFPAAYVEE 61
>pdb|2CI9|A Chain A, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
pdb|2CI9|B Chain B, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
Length = 102
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
WY+G +TR +A+ L G FL+RDS + ++ + +K K H+ + ++
Sbjct: 7 WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQL-----KE 61
Query: 73 TCYKIGDKTFSDLPSLLAFYK 93
T Y IG + FS + L+ YK
Sbjct: 62 TVYCIGQRKFSTMEELVEHYK 82
>pdb|2CI8|A Chain A, Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomplexed
Length = 99
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
WY+G +TR +A+ L G FL+RDS + ++ + +K K H+ + ++
Sbjct: 3 WYYGKVTRHQAEMALNERGHEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQL-----KE 57
Query: 73 TCYKIGDKTFSDLPSLLAFYK 93
T Y IG + FS + L+ YK
Sbjct: 58 TVYCIGQRKFSTMEELVEHYK 78
>pdb|1GHU|A Chain A, Nmr Solution Structure Of Growth Factor Receptor-Bound
Protein 2 (Grb2) Sh2 Domain, 24 Structures
Length = 107
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
SW+FG + R +A+ +L ++ +GAFL+R+S + G++ L VK N V H+ +
Sbjct: 1 GSWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 53
>pdb|1CSK|A Chain A, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|B Chain B, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|C Chain C, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|D Chain D, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
Length = 71
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE-HWWTAQNISGEVGSIPVPYVQK 165
+ IAKY+F G DLPF K D+L +V+ ++ +W+ A+N G G IP YVQK
Sbjct: 13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQK 67
>pdb|1A81|A Chain A, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|C Chain C, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|E Chain E, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|G Chain G, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|I Chain I, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
pdb|1A81|K Chain K, Crystal Structure Of The Tandem Sh2 Domain Of The Syk
Kinase Bound To A Dually Tyrosine-Phosphorylated Itam
Length = 254
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 8 HDRNSWYFGMMTRQEA-QAILLSEKDNGAFLVR--DSNTILGNYVLCVKENNKVSHYIIN 64
H++ W+ G ++R+E+ Q +L+ K NG FL+R D+N G+Y LC+ KV HY I+
Sbjct: 155 HEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNN---GSYALCLLHEGKVLHYRID 211
Query: 65 K 65
K
Sbjct: 212 K 212
>pdb|1BM2|A Chain A, Grb2-Sh2 Domain In Complex With
Cyclo-[n-Alpha-Acetyl-L-Thi
Alysyl-O-Phosphotyrosyl-Valyl-Asparagyl-Valyl-Prolyl]
(Pkf273-791)
Length = 117
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
W+FG + R +A+ +L ++ +GAFL+R+S + G++ L VK N V H+ +
Sbjct: 14 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 64
>pdb|1CSY|A Chain A, Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed With
A Phosphopeptidefrom The Gamma Chain Of The High
Affinity Immunoglobin G Receptor, Nmr
pdb|1CSZ|A Chain A, Syk Tyrosine Kinase C-Terminal Sh2 Domain Complexed With
A Phosphopeptidefrom The Gamma Chain Of The High
Affinity Immunoglobin G Receptor, Nmr
Length = 112
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 6/65 (9%)
Query: 4 TFDPHDRNSWYFGMMTRQEA-QAILLSEKDNGAFLVR--DSNTILGNYVLCVKENNKVSH 60
+ H++ W+ G ++R+E+ Q +L+ K NG FL+R D+N G+Y LC+ KV H
Sbjct: 6 SVGSHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNN---GSYALCLLHEGKVLH 62
Query: 61 YIINK 65
Y I+K
Sbjct: 63 YRIDK 67
>pdb|2H46|E Chain E, Native Domain-Swapped Dimer Crystal Structure Of The
Grb2 Sh2 Domain
pdb|2H5K|A Chain A, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2H5K|B Chain B, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2HUW|A Chain A, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|2HUW|B Chain B, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|3C7I|A Chain A, X-Ray Crystal Structure Of The Complex Between The
Grb2-Sh2 Domain And A Flexible Ligand, Fptvn
Length = 116
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
W+FG + R +A+ +L ++ +GAFL+R+S + G++ L VK N V H+ +
Sbjct: 8 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 58
>pdb|1X0N|A Chain A, Nmr Structure Of Growth Factor Receptor Binding Protein
Sh2 Domain Complexed With The Inhibitor
pdb|1QG1|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
Complexed With An Shc-Derived Peptide
Length = 104
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
W+FG + R +A+ +L ++ +GAFL+R+S + G++ L VK N V H+ +
Sbjct: 5 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 55
>pdb|3OVE|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Pyxn- Derived Tripeptide
Length = 117
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
W+FG + R +A+ +L ++ +GAFL+R+S + G++ L VK N V H+ +
Sbjct: 8 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 58
>pdb|3IMD|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMD|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2
Tripeptide Mimic
pdb|3IMJ|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2
Tripeptide Mimic
pdb|3IN7|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide
Mimic
pdb|3IN7|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide
Mimic
pdb|3IN8|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Flexible Ac-Ptyr-Ile-Asn-Nh2 Tripeptide Mimic
pdb|3KFJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Flexible Ac-py-e-n-nh2 Tripeptide Mimic
pdb|3N8M|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
An Acyclic Ligand Having The Sequence Pyvnvp
pdb|3OV1|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Pyxn- Derived Tripeptide
pdb|3S8L|A Chain A, Protein-Ligand Interactions: Thermodynamic Effects
Associated With Increasing Hydrophobic Surface Area
pdb|3S8N|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Pyxn- Derived Tripeptide
pdb|3S8O|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A Pyxn- Derived Tripeptide
Length = 117
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
W+FG + R +A+ +L ++ +GAFL+R+S + G++ L VK N V H+ +
Sbjct: 8 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 58
>pdb|1FHS|A Chain A, The Three-Dimensional Solution Structure Of The Src
Homology Domain-2 Of The Growth Factor Receptor Bound
Protein-2, Nmr, 18 Structures
Length = 112
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
W+FG + R +A+ +L ++ +GAFL+R+S + G++ L VK N V H+ +
Sbjct: 9 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 59
>pdb|1BMB|A Chain A, Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-974)
Length = 123
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
W+FG + R +A+ +L ++ +GAFL+R+S + G++ L VK N V H+ +
Sbjct: 15 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 65
>pdb|3N84|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|D Chain D, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|E Chain E, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|F Chain F, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
Length = 112
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
W+FG + R +A+ +L ++ +GAFL+R+S + G++ L VK N V H+ +
Sbjct: 9 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 59
>pdb|1FYR|A Chain A, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|B Chain B, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|C Chain C, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|D Chain D, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
Length = 114
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
W+FG + R +A+ +L ++ +GAFL+R+S + G++ L VK N V H+ +
Sbjct: 13 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 63
>pdb|2DLY|A Chain A, Solution Structure Of The Sh2 Domain Of Murine
Fyn-Related Kinase
Length = 121
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 2 TGTFDPHDRN----SWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENN 56
+G+ DR+ W+FG + R +A+ LL SE GAFL+R+S + G++ L V +
Sbjct: 3 SGSSGAEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEG 62
Query: 57 KVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFY 92
V HY I ++ ++ + K FS L + +Y
Sbjct: 63 VVKHYRIRRL---DEGGFFLTRRKVFSTLNEFVNYY 95
>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 635
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 8 HDRNSWYFGMMTRQEA-QAILLSEKDNGAFLVR--DSNTILGNYVLCVKENNKVSHYIIN 64
H++ W+ G ++R+E+ Q +L+ K NG FL+R D+N G+Y LC+ KV HY I+
Sbjct: 163 HEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNN---GSYALCLLHEGKVLHYRID 219
Query: 65 K 65
K
Sbjct: 220 K 220
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 2 TGTFDPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
+G D + ++FG +TR+EA+ L+ +G +L+R S LG + L V K H
Sbjct: 4 SGMADSANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHH 63
Query: 61 YIINKITN 68
Y I + N
Sbjct: 64 YTIERELN 71
>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 636
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 8 HDRNSWYFGMMTRQEA-QAILLSEKDNGAFLVR--DSNTILGNYVLCVKENNKVSHYIIN 64
H++ W+ G ++R+E+ Q +L+ K NG FL+R D+N G+Y LC+ KV HY I+
Sbjct: 164 HEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNN---GSYALCLLHEGKVLHYRID 220
Query: 65 K 65
K
Sbjct: 221 K 221
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 2 TGTFDPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
+G D + ++FG +TR+EA+ L+ +G +L+R S LG + L V K H
Sbjct: 5 SGMADSANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHH 64
Query: 61 YIINKITN 68
Y I + N
Sbjct: 65 YTIERELN 72
>pdb|3MXC|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes
Reveal A Conformational Switch And Their Functional
Implications.
pdb|3MXY|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes
Reveal A Conformational Switch And Their Functional
Implications
Length = 101
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
W+FG + R +A+ +L ++ +GAFL+R+S + G++ L VK N V H+ +
Sbjct: 9 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 59
>pdb|2ECD|A Chain A, Solution Structure Of The Human Abl2 Sh2 Domain
Length = 119
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
+++SWY G ++R A+ LLS NG+FLVR+S + G + ++ +V HY IN
Sbjct: 14 EKHSWYHGPVSRSAAE-YLLSSLINGSFLVRESESSPGQLSISLRYEGRVYHYRIN---T 69
Query: 69 TEQQTCYKIGDKTFSDLPSLL 89
T Y + FS L L+
Sbjct: 70 TADGKVYVTAESRFSTLAELV 90
>pdb|1ZFP|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
Complexed With A Phosphotyrosyl Pentapeptide
Length = 98
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
W+FG + R +A+ +L ++ +GAFL+R+S + G++ L VK N V H+ +
Sbjct: 5 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 55
>pdb|3EAZ|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), C122s Mutant
Length = 106
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
W+ G +TR++A+ LL + G FLVR+S G+Y LCV + KV HY I
Sbjct: 10 WFHGKITREQAER-LLYPPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRI 59
>pdb|2AOA|A Chain A, Crystal Structures Of A High-affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOA|B Chain B, Crystal Structures Of A High-affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|A Chain A, Crystal Structures Of A High-Affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|B Chain B, Crystal Structures Of A High-Affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|C Chain C, Crystal Structures Of A High-Affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|D Chain D, Crystal Structures Of A High-Affinity Macrocyclic
Peptide Mimetic In Complex With The Grb2 Sh2 Domain
Length = 99
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
W+FG + R +A+ +L ++ +GAFL+R+S + G++ L VK N V H+ +
Sbjct: 6 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 56
>pdb|1TZE|E Chain E, Signal Transduction Adaptor Growth Factor, Grb2 Sh2
Domain Complexed With Phosphotyrosyl Heptapeptide
Lys-Pro-Phe-Ptyr-Val-Asn-Val-Nh2 (Kfppyvnc-Nh2)
pdb|3N7Y|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 20-Membered Macrocyclic Ligand Having The Sequence
Pyvnv
pdb|3N7Y|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 20-Membered Macrocyclic Ligand Having The Sequence
Pyvnv
pdb|3N7Y|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
A 20-Membered Macrocyclic Ligand Having The Sequence
Pyvnv
Length = 98
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
W+FG + R +A+ +L ++ +GAFL+R+S + G++ L VK N V H+ +
Sbjct: 6 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 56
>pdb|1CJ1|A Chain A, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|B Chain B, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|C Chain C, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|D Chain D, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|F Chain F, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|G Chain G, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|H Chain H, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|I Chain I, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|J Chain J, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|K Chain K, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|L Chain L, Growth Factor Receptor Binding Protein Sh2 Domain
(Human) Complexed With A Phosphotyrosyl Derivative
Length = 96
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
W+FG + R +A+ +L ++ +GAFL+R+S + G++ L VK N V H+ +
Sbjct: 4 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 54
>pdb|1JYQ|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A
Highly Affine Phospho Peptide
pdb|1JYQ|B Chain B, Xray Structure Of Grb2 Sh2 Domain Complexed With A
Highly Affine Phospho Peptide
pdb|1JYR|A Chain A, Xray Structure Of Grb2 Sh2 Domain Complexed With A
Phosphorylated Peptide
pdb|1JYU|A Chain A, Xray Structure Of Grb2 Sh2 Domain
Length = 96
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
+W+FG + R +A+ +L ++ +GAFL+R+S + G++ L VK N V H+ +
Sbjct: 4 AWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKV 55
>pdb|2CIA|A Chain A, Human Nck2 Sh2-Domain In Complex With A
Decaphosphopeptide From Translocated Intimin Receptor
(Tir) Of Epec
Length = 102
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE 70
+ WY+G +TR +A+ L G FL+RDS + ++ + +K + K H+ + + N
Sbjct: 5 SEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV- 63
Query: 71 QQTCYKIGDKTFSDLPSLLAFYK 93
Y IG + F + L+ YK
Sbjct: 64 ----YCIGQRRFHTMDELVEHYK 82
>pdb|3EAC|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), Oxidized Form
Length = 106
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
W+ G +TR++A+ LL + G FLVR+S G+Y LCV + KV HY I
Sbjct: 10 WFHGKITREQAER-LLYPPETGLFLVRESTNYPGDYTLCVSCDGKVEHYRI 59
>pdb|1Z3K|A Chain A, Structural Insight Into The Binding Diversity Between
The Tyr-Phosphorylated Human Ephrinbs And Nck2 Sh2
Domain
Length = 98
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
WY+G +TR +A+ L G FL+RDS + ++ + +K + K H+ + + N
Sbjct: 3 WYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV--- 59
Query: 73 TCYKIGDKTFSDLPSLLAFYK 93
Y IG + F + L+ YK
Sbjct: 60 --YCIGQRRFHTMDELVEHYK 78
>pdb|2LMJ|A Chain A, Itk-Sh3
Length = 66
Score = 47.8 bits (112), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
VIA YD+ NDP +L ++N+ ++ E HWW Q+ +G G +P Y+ + S
Sbjct: 11 VIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKS 65
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
PA + +VIA YD+ N+ D+L F K ++ V++KD+ WW + I+G G P YV+
Sbjct: 29 PAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGE-INGVTGLFPSNYVK 87
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 201 EVKLPAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFP 255
E PAF V QV YD A L G +I V + W+GE+NG TG FP
Sbjct: 25 ERATPAFHPVCQVIA--MYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFP 82
Query: 256 FTHVEFIPTNETSVETNG 273
+V+ T ++S ++G
Sbjct: 83 SNYVKM--TTDSSGPSSG 98
>pdb|4EY0|A Chain A, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|B Chain B, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|C Chain C, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|D Chain D, Structure Of Tandem Sh2 Domains From Plcgamma1
Length = 246
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
+ H+ WY +TR +A+ +L+ +GAFLVR N +Y + + K+ H + +
Sbjct: 117 NAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEP-NSYAISFRAEGKIKHCRVQQ 175
Query: 66 ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL 97
E QT +G+ F L L+++Y+ H L
Sbjct: 176 ----EGQTVM-LGNSEFDSLVDLISYYEKHPL 202
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 8 HDRNSWYFGMMT-----RQEAQAILL-----SEKDNGAFLVRDSNTILGNYVLCVKENNK 57
H W+ G + R A+ +L + +G+FLVR+S T +G+Y L N K
Sbjct: 1 HSNEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGK 60
Query: 58 VSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK 93
V H I+ + + + F L L+ Y+
Sbjct: 61 VQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQ 96
>pdb|2YUQ|A Chain A, Solution Structure Of The Sh3 Domain Of Human Tyrosine-
Protein Kinase ItkTSK
Length = 85
Score = 47.4 bits (111), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 101 PLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPV 160
PL +P VIA YD+ NDP +L ++N+ ++ E HWW Q+ +G G +P
Sbjct: 13 PLWEPEETV---VIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPS 69
Query: 161 PYVQKYS 167
Y+ + S
Sbjct: 70 SYLVEKS 76
>pdb|2FCI|A Chain A, Structural Basis For The Requirement Of Two
Phosphotyrosines In Signaling Mediated By Syk Tyrosine
Kinase
pdb|2PLD|A Chain A, Nuclear Magnetic Resonance Structure Of An Sh2 Domain Of
Phospholipase C-gamma1 Complexed With A High Affinity
Binding Peptide
pdb|2PLE|A Chain A, Nuclear Magnetic Resonance Structure Of An Sh2 Domain Of
Phospholipase C-Gamma1 Complexed With A High Affinity
Binding Peptide
Length = 105
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYI 62
G+ H+ WY +TR +A+ +L+ +GAFLVR N +Y + + K+ H
Sbjct: 1 GSPGIHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEP-NSYAISFRAEGKIKHCR 59
Query: 63 INKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL 97
+ + E QT +G+ F L L+++Y+ H L
Sbjct: 60 VQQ----EGQTVM-LGNSEFDSLVDLISYYEKHPL 89
>pdb|3GQI|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 226
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
+ H+ WY +TR +A+ +L+ +GAFLVR N +Y + + K+ H + +
Sbjct: 117 NAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEP-NSYAISFRAEGKIKHCRVQQ 175
Query: 66 ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL 97
E QT +G+ F L L+++Y+ H L
Sbjct: 176 ----EGQTVM-LGNSEFDSLVDLISYYEKHPL 202
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 33 NGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFY 92
+G+FLVR+S T +G+Y L N KV H I+ + + + F L L+ Y
Sbjct: 36 DGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHY 95
Query: 93 K 93
+
Sbjct: 96 Q 96
>pdb|4FBN|A Chain A, Insights Into Structural Integration Of The Plcgamma
Regulatory Region And Mechanism Of Autoinhibition And
Activation Based On Key Roles Of Sh2 Domains
Length = 246
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
+ H+ WY +TR +A+ +L+ +GAFLVR N +Y + + K+ H + +
Sbjct: 117 NAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEP-NSYAISFRAEGKIKHCRVQQ 175
Query: 66 ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL 97
E QT +G+ F L L+++Y+ H L
Sbjct: 176 ----EGQTV-MLGNSEFDSLVDLISYYEKHPL 202
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 8 HDRNSWYFGMMT-----RQEAQAILL-----SEKDNGAFLVRDSNTILGNYVLCVKENNK 57
H W+ G + R A+ +L + +G+FLVR+S T +G+Y L N K
Sbjct: 1 HSNEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGK 60
Query: 58 VSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK 93
V H I+ + + + F L L+ Y+
Sbjct: 61 VQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQ 96
>pdb|1AB2|A Chain A, Three-Dimensional Solution Structure Of The Src Homology
2 Domain Of C-Abl
Length = 109
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYI 62
G+ + +++SWY G ++R A+ LLS NG+FLVR+S + G + ++ +V HY
Sbjct: 1 GSGNSLEKHSWYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYR 59
Query: 63 INKITNTEQQTCYKIGDKTFSDLPSLL 89
IN ++ + Y + F+ L L+
Sbjct: 60 INTASDGK---LYVSSESRFNTLAELV 83
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+VIA YD+ N+ D+L F K ++ V++KD+ WW + I+G G P YV+
Sbjct: 20 QVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGE-INGVTGLFPSNYVK 71
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 213 VRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEF 261
+V YD A L G +I V + W+GE+NG TG FP +V+
Sbjct: 19 CQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKM 72
>pdb|3T04|A Chain A, Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN
COMPLEX
pdb|3UYO|A Chain A, Crystal Structure Of Monobody Sh13ABL1 SH2 DOMAIN
COMPLEX
Length = 123
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
+++SWY G ++R A+ LLS NG+FLVR+S + G + ++ +V HY IN ++
Sbjct: 14 EKHSWYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 72
Query: 69 TEQQTCYKIGDKTFSDLPSLL 89
+ Y + F+ L L+
Sbjct: 73 GK---LYVSSESRFNTLAELV 90
>pdb|1AOT|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A
Phosphotyrosyl Peptide, Minimized Average Structure
pdb|1AOU|F Chain F, Nmr Structure Of The Fyn Sh2 Domain Complexed With A
Phosphotyrosyl Peptide, 22 Structures
Length = 106
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 66
WYFG + R++A+ LLS + G FL+R+S T G Y L +++ + V HY I K+
Sbjct: 7 WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKL 66
Query: 67 TN 68
N
Sbjct: 67 DN 68
>pdb|3K2M|A Chain A, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
pdb|3K2M|B Chain B, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
Length = 112
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
+++SWY G ++R A+ LLS NG+FLVR+S + G + ++ +V HY IN ++
Sbjct: 3 EKHSWYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 61
Query: 69 TEQQTCYKIGDKTFSDLPSLL 89
+ Y + F+ L L+
Sbjct: 62 GK---LYVSSESRFNTLAELV 79
>pdb|2EBP|A Chain A, Solution Structure Of The Sh3 Domain From Human Sam And
Sh3 Domain Containing Protein 1
Length = 73
Score = 46.2 bits (108), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 33/61 (54%)
Query: 208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET 267
ARV P+ YD +LKL+ GDII + G W G LN K G F F +V+ + + +
Sbjct: 12 ARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSSGPS 71
Query: 268 S 268
S
Sbjct: 72 S 72
Score = 27.7 bits (60), Expect = 8.7, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 123 DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMS 171
D D L KK DI+ ++SK W ++ +VG+ YV S G S
Sbjct: 24 DTDSLKLKKGDIIDIISKPPMGTWMGL-LNNKVGTFKFIYVDVLSSGPS 71
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 66
WYFG + R++A+ LLS + G FL+R+S T G Y L +++ + V HY I K+
Sbjct: 68 WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKL 127
Query: 67 TN 68
N
Sbjct: 128 DN 129
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
+A YD++ DDL F K + +++ E WW A+++ +GE G IP YV
Sbjct: 7 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 57
>pdb|2GSB|A Chain A, Solution Structure Of The Second Sh2 Domain Of Human Ras
Gtpase-Activating Protein 1
Length = 119
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
DPH+ W+ G +++QEA +L++ +FLVR S+ G+Y L + N + + I
Sbjct: 11 DPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICP 70
Query: 66 ITNTEQQTCYKIGDKTFSDLPSLLAFYK 93
N + + +G + ++ + ++ Y+
Sbjct: 71 TPNNQ----FMMGGRYYNSIGDIIDHYR 94
>pdb|1RJA|A Chain A, Solution Structure And Backbone Dynamics Of The
Nonreceptor Tyrosine Kinase Ptk6BRK SH2 DOMAIN
Length = 100
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
W+FG ++R EA L +E + GAFL+R S +YVL V++ V HY I +
Sbjct: 4 WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRL 63
Query: 72 QTCYKIGDKTFSDLPSLLAFYKVHYLD 98
+ +F LP L+ +++ L
Sbjct: 64 HLNEAV---SFLSLPELVNYHRAQSLS 87
>pdb|2YSX|A Chain A, Solution Structure Of The Human Ship Sh2 Domain
Length = 119
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII--NKITNT 69
W G +TR +A+ +L +G+FLVR S +I Y LCV N V Y I N+
Sbjct: 11 CWNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKF 70
Query: 70 EQQTCYKIGDKTFSDLPSLLAFYK 93
Q + + F+ L L+ FYK
Sbjct: 71 TVQASEGVSMRFFTKLDQLIEFYK 94
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 46.2 bits (108), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYVQ 164
K +A Y F G + DLPF+K D++ ++ K + WWT + ++G G P YV+
Sbjct: 5 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGR-VNGREGIFPANYVE 58
Score = 31.6 bits (70), Expect = 0.48, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 224 LKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFI 262
L GD+I + K + N W G +NG+ G FP +VE +
Sbjct: 20 LPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV 60
>pdb|1TCE|A Chain A, Solution Nmr Structure Of The Shc Sh2 Domain Complexed
With A Tyrosine-Phosphorylated Peptide From The T-Cell
Receptor, Minimized Average Structure
Length = 107
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
W+ G ++R+EA+A+L + NG FLVR+S T G YVL ++ + H ++ + +
Sbjct: 9 WFHGKLSRREAEALL---QLNGDFLVRESTTTPGQYVLTGSQSGQPKHLLL-----VDPE 60
Query: 73 TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 108
+ D F + L++++ ++L P+I ++
Sbjct: 61 GVVRTKDHRFESVSHLISYHMDNHL---PIISAGSE 93
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 45.8 bits (107), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 229 GDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNG 273
GDII VT+ G WEG LNG+TG FP +V I ++E S ++G
Sbjct: 32 GDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSERSGPSSG 76
Score = 34.3 bits (77), Expect = 0.075, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
V A+++F + D+L K DI+ V +E WW ++G G P YV++
Sbjct: 13 VKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEG-TLNGRTGWFPSNYVRE 64
>pdb|2EOB|A Chain A, Solution Structure Of The Second Sh2 Domain From Rat Plc
Gamma-2
Length = 124
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
+PH+ WY+ ++R EA+ +L+ +GAFL+R +Y + + KV H IN+
Sbjct: 14 NPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGT-DSYAITFRARGKVKHCRINR 72
Query: 66 ITNTEQQTCYKIGDKT-FSDLPSLLAFYKVHYL 97
+ +G F L L+++Y+ H L
Sbjct: 73 -----DGRHFVLGTSAYFESLVELVSYYEKHAL 100
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKE-----NNKVSHYIINKI 66
WYFG + R++A+ LLS + G FL+R+S T G Y L +++ + V HY I K+
Sbjct: 69 WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDXKGDHVKHYKIRKL 128
Query: 67 TN 68
N
Sbjct: 129 DN 130
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
+A YD++ DDL F K + +++ E WW A+++ +GE G IP YV
Sbjct: 8 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 58
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1
Domain Containing 3
Length = 78
Score = 45.4 bits (106), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
A DF+ +D D+L F+KNDI+ ++S+ +EH W + ++G G P +V+ E
Sbjct: 12 ALLDFERHDDDELGFRKNDIITIISQKDEHCWVGE-LNGLRGWFPAKFVEVLDE 64
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 219 YDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
+D L DII + W GELNG G FP VE +
Sbjct: 19 HDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVL 62
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 45.4 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
A YD+ +PD+L DIL V+ + E+ WWT + +G+ G +P Y++K S
Sbjct: 13 ALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVER-NGQRGFVPGSYLEKLS 64
Score = 32.0 bits (71), Expect = 0.46, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
YD TA L L GDI++V +G W E NG+ G P +++E
Sbjct: 15 YDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLE 61
>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase
Length = 163
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
+++SWY G ++R A+ LLS NG+FLVR+S + G + ++ +V HY IN ++
Sbjct: 68 EKHSWYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 126
Query: 69 TEQQTCYKIGDKTFSDLPSLL 89
+ Y + F+ L L+
Sbjct: 127 GK---LYVSSESRFNTLAELV 144
>pdb|2GE9|A Chain A, Solution Structures Of The Sh2 Domain Of Bruton's
Tyrosine Kinase
Length = 125
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 1 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNK--- 57
MT D + WY MTR +A+ +L E G F+VRDS+ G Y + V +
Sbjct: 1 MTEAEDSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDSSKA-GKYTVSVFAKSTGDP 59
Query: 58 ---VSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK 93
+ HY+ + +T Q Y FS +P L+ +++
Sbjct: 60 QGVIRHYV---VCSTPQSQYYLAEKHLFSTIPELINYHQ 95
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+VI YD+ + D+L F K I+ V++K++ WW + +SG+VG P YV+
Sbjct: 4 QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGE-VSGQVGLFPSNYVK 55
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 213 VRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEF 261
+V YD TA L G II V W+GE++G+ G FP +V+
Sbjct: 3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKL 56
>pdb|2AUG|A Chain A, Crystal Structure Of The Grb14 Sh2 Domain
pdb|2AUG|B Chain B, Crystal Structure Of The Grb14 Sh2 Domain
Length = 126
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 3 GTFDPHDRNSWYFGMMTRQEAQAILLSEK-DNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
G+ H W+ ++R EAQ +++ + +G FLVRDS + +VL + K+ H+
Sbjct: 18 GSHMIHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHF 77
Query: 62 -IINKITNTEQQTCYKIGDKTFSDLPSLLAFYKV 94
II + E G F+DL L+ FY++
Sbjct: 78 QIIPVEDDGEMFHTLDDGHTRFTDLIQLVEFYQL 111
>pdb|1GL5|A Chain A, Nmr Structure Of The Sh3 Domain From The Tec Protein
Tyrosine Kinase
Length = 67
Score = 45.1 bits (105), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
E V+A YDF + DL ++ I++ K++ HWW A++ G G IP YV
Sbjct: 3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYV 55
>pdb|1MIL|A Chain A, Transforming Protein
Length = 104
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
W+ G ++R+EA+A+L + NG FLVR+S T G YVL ++ + H ++ + +
Sbjct: 9 WFHGKLSRREAEALL---QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLL-----VDPE 60
Query: 73 TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 108
+ D F + L++++ ++L P+I ++
Sbjct: 61 GVVRTKDHRFESVSHLISYHMDNHL---PIISAGSE 93
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
+++SWY G ++R A+ LLS NG+FLVR+S + G + ++ +V HY IN ++
Sbjct: 142 EKHSWYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 200
Query: 69 TEQQTCYKIGDKTFSDLPSLL 89
+ Y + F+ L L+
Sbjct: 201 GK---LYVSSESRFNTLAELV 218
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
+++SWY G ++R A+ LLS NG+FLVR+S + G + ++ +V HY IN ++
Sbjct: 103 EKHSWYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 161
Query: 69 TEQQTCYKIGDKTFSDLPSLL 89
+ Y + F+ L L+
Sbjct: 162 GK---LYVSSESRFNTLAELV 179
>pdb|1I3Z|A Chain A, Murine Eat2 Sh2 Domain In Complex With Slam
Phosphopeptide
Length = 103
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
+Y G +T++E +A+LL +G FL+RDS ++ G LCV V Y I + E+
Sbjct: 5 YYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFR----EKH 60
Query: 73 TCYKI 77
Y+I
Sbjct: 61 GYYRI 65
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
+++SWY G ++R A+ LLS NG+FLVR+S + G + ++ +V HY IN ++
Sbjct: 100 EKHSWYHGPVSRNAAE-YLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD 158
Query: 69 TEQQTCYKIGDKTFSDLPSLL 89
+ Y + F+ L L+
Sbjct: 159 GK---LYVSSESRFNTLAELV 176
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+V A YD+D D+L FK+ D +IV KD WW + ++G+ G +P YVQ
Sbjct: 6 QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGE-LNGKRGWVPANYVQ 57
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 213 VRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
++V YD A L + GD I V + + G WEGELNGK G P +V+ I
Sbjct: 5 IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 59
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCV-----KENNKVS 59
D + W+F ++R++A+ LL+ + G+F++RDS T G+Y L V ++ + V
Sbjct: 66 DSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVK 125
Query: 60 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK 93
HY I + N Y TFS L L+ YK
Sbjct: 126 HYKIRTLDNG---GFYISPRSTFSTLQELVDHYK 156
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQK 165
V+A YD++ +DL F+K D ++V+ + E WW A++++ + G IP YV +
Sbjct: 12 VVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVAR 64
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+V A YD+D D+L FK+ D +IV KD WW + ++G+ G +P YVQ
Sbjct: 5 QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGE-LNGKRGWVPANYVQ 56
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 213 VRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
++V YD A L + GD I V + + G WEGELNGK G P +V+ I
Sbjct: 4 IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 58
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCV-----KENNKVS 59
D + W+F ++R++A+ LL+ + G+F++RDS T G+Y L V ++ + V
Sbjct: 65 DSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVK 124
Query: 60 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK 93
HY I + N Y TFS L L+ YK
Sbjct: 125 HYKIRTLDNG---GFYISPRSTFSTLQELVDHYK 155
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQK 165
V+A YD++ +DL F+K D ++V+ + E WW A++++ + G IP YV +
Sbjct: 11 VVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVAR 63
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCV-----KENNKVS 59
D + W+F ++R++A+ LL+ + G+F++RDS T G+Y L V ++ + V
Sbjct: 59 DSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVK 118
Query: 60 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK 93
HY I + N Y TFS L L+ YK
Sbjct: 119 HYKIRTLDNG---GFYISPRSTFSTLQELVDHYK 149
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQK 165
V+A YD++ +DL F+K D ++V+ + E WW A++++ + G IP YV +
Sbjct: 5 VVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVAR 57
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYV 163
+V A Y F+G P DL F+ D + V+SK + H WW + + G+ G P YV
Sbjct: 19 EVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGK-LRGQTGIFPANYV 71
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 224 LKLEIGDIIKV-TKTNIN-GQWEGELNGKTGHFPFTHV 259
L + GD I V +KT+ + WEG+L G+TG FP +V
Sbjct: 34 LNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYV 71
>pdb|2CRH|A Chain A, Solution Structure Of The Sh2 Domain Of Human Proto-
Oncogene Protein Vav1
pdb|2ROR|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With A
Tyrosine-Phosphorylated Peptide From Slp76
Length = 138
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
WY G M R A++IL + D G FLVR + + +K N +V H KI E
Sbjct: 28 WYAGPMERAGAESILANRSD-GTFLVRQRVKDAAEFAISIKYNVEVKHI---KIMTAE-- 81
Query: 73 TCYKIGD-KTFSDLPSLLAFYK-------VHYLDTS---PLIKPATKTIEK 112
Y+I + K F L L+ FY+ LDT+ P +P +TI +
Sbjct: 82 GLYRITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKEPEKRTISR 132
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 44.3 bits (103), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 101 PLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPV 160
PL P K A Y +D D D+L F NDI+ ++ +D WWT + + G+ G P
Sbjct: 2 PLGSPQCK------ALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGR-LRGKQGLFPN 54
Query: 161 PYVQK 165
YV K
Sbjct: 55 NYVTK 59
Score = 35.4 bits (80), Expect = 0.032, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
+A D L DII + K + +G W G L GK G FP +V I
Sbjct: 15 DAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI 60
>pdb|1AYA|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYA|B Chain B, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYB|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYC|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
pdb|1AYD|A Chain A, Crystal Structures Of Peptide Complexes Of The Amino-
Terminal Sh2 Domain Of The Syp Tyrosine Phosphatase
Length = 101
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
W+ +T EA+ +LL+ +G+FL R S + G++ L V+ N V+H KI NT
Sbjct: 4 WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHI---KIQNTGDY 60
Query: 73 TCYKIGDKTFSDLPSLLAFYKVHY 96
G+K F+ L L+ +Y H+
Sbjct: 61 YDLYGGEK-FATLAELVQYYMEHH 83
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYVQ 164
+A Y+F G P DL FKK D++ ++ K + WWT + +G+ G P YV+
Sbjct: 7 VALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRT-NGKEGIFPANYVR 58
Score = 28.9 bits (63), Expect = 3.0, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 224 LKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHV 259
L + GD+I + K + N W G NGK G FP +V
Sbjct: 20 LAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYV 57
>pdb|3TL0|A Chain A, Structure Of Shp2 N-Sh2 Domain In Complex With
Rlnpyaqlwhr Peptide
pdb|3TKZ|A Chain A, Structure Of The Shp-2 N-Sh2 Domain In A 1:2 Complex
With Rvipyfvplnr Peptide
Length = 109
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
W+ +T EA+ +LL+ +G+FL R S + G++ L V+ N V+H KI NT
Sbjct: 9 WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHI---KIQNTGDY 65
Query: 73 TCYKIGDKTFSDLPSLLAFYKVHY 96
G+K F+ L L+ +Y H+
Sbjct: 66 YDLYGGEK-FATLAELVQYYMEHH 88
>pdb|2I0N|A Chain A, Structure Of Dictyostelium Discoideum Myosin Vii Sh3
Domain With Adjacent Proline Rich Region
Length = 80
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 114 IAKY-----DFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
AKY D++ +D LPFK+NDI+ + KD+E+ W ++G+ GS PV +V+
Sbjct: 9 FAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVE 64
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 205 PAFAR-VKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVEFI 262
P FA+ + ++ N D + L + DII +T + +W G+LNGK G FP HVE +
Sbjct: 7 PEFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEIL 66
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+ IAKYDF D+L FK+ DIL V++++ + W ++G+ G IP Y++
Sbjct: 11 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 63
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYV 163
+A YD++ DL FKK + L +V+ E WW A ++S G+ G IP YV
Sbjct: 6 VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
+ +A YD++ DL FKK + L +V+ E WW A ++ +G+ G IP YV
Sbjct: 7 VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 98 DTSPLIKPATKTIE-KVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEV 155
D++P AT E +V A YD++G + D+L FK D L + +DE+ W + +G+V
Sbjct: 415 DSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQV 474
Query: 156 GSIPVPYVQ 164
G P YV+
Sbjct: 475 GLYPANYVE 483
>pdb|3HCK|A Chain A, Nmr Ensemble Of The Uncomplexed Human Hck Sh2 Domain, 20
Structures
Length = 107
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 13 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCV-----KENNKVSHYIINKI 66
W+F ++R++A+ LL+ + G+F++RDS T G+Y L V ++ + V HY I +
Sbjct: 6 WFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTL 65
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYK 93
N Y TFS L L+ YK
Sbjct: 66 DNG---GFYISPRSTFSTLQELVDHYK 89
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
Length = 64
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
+ +A YD++ DL FKK + L +V+ E WW A ++ +G+ G IP YV
Sbjct: 7 VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2
pdb|2SHP|B Chain B, Tyrosine Phosphatase Shp-2
Length = 525
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 16/92 (17%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK------ENN----KVSHYI 62
W+ G ++ +EA+ +L + +G+FLVR+S + G++VL V+ E+N KV+H +
Sbjct: 112 WFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVM 171
Query: 63 INKITNTEQQTCYKI-GDKTFSDLPSLLAFYK 93
I Q+ Y + G + F L L+ YK
Sbjct: 172 IRC-----QELKYDVGGGERFDSLTDLVEHYK 198
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
W+ +T EA+ +LL+ +G+FL R S + G+ L V+ N V+H KI NT
Sbjct: 6 WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHI---KIQNTGDY 62
Query: 73 TCYKIGDKTFSDLPSLLAFYKVHY 96
G+K F+ L L+ +Y H+
Sbjct: 63 YDLYGGEK-FATLAELVQYYMEHH 85
>pdb|3S9K|A Chain A, Crystal Structure Of The Itk Sh2 Domain
Length = 118
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVSHYIINKI 66
WY ++R +A+ +LL GAF+VRDS T G Y + V EN + HY I K
Sbjct: 11 WYNKSISRDKAEKLLLDTGKEGAFMVRDSRT-PGTYTVSVFTKAIISENPCIKHYHI-KE 68
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYK 93
TN + Y F +P L+ +++
Sbjct: 69 TNDSPKRYYVAEKYVFDSIPLLIQYHQ 95
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 103 IKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
I+ K KV A YDF+ + ++L FK +I+IV+ + +WW +N G +G P +
Sbjct: 10 IQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRG-IGLFPSNF 68
Query: 163 V 163
V
Sbjct: 69 V 69
>pdb|1AWJ|A Chain A, Intramolecular Itk-Proline Complex, Nmr, Minimized Average
Structure
Length = 77
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
VIA YD+ NDP +L + ++ ++ E HWW Q+ +G G P Y+
Sbjct: 23 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYL 73
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide P2l
Corresponding To Residues 91-104 Of The P85 Subunit Of
Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
+A YD++ DDL F K + +++ E WW A+++ +GE G IP YV
Sbjct: 9 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 59
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
E V+A YD+ P ++ KK DIL +++ + WW + ++G G +P YV+K
Sbjct: 7 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKTE-VNGRQGFVPAAYVKK 60
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
+A YD++ DDL F K + +++ E WW A+++ +GE G IP YV
Sbjct: 7 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 57
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
E V+A YD+ P ++ KK DIL +++ + WW + ++G G +P YV+K
Sbjct: 2 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNGRQGFVPAAYVKK 55
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
+A YD++ DDL F K + +++ E WW A+++ +GE G IP YV
Sbjct: 4 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
+A YD++ DDL F K + +++ E WW A+++ +GE G IP YV
Sbjct: 9 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 59
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 42.4 bits (98), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFP 255
L+L++GDII+V G WEG LNGKTG FP
Sbjct: 24 LELKVGDIIEVVGEVEEGWWEGVLNGKTGMFP 55
Score = 32.3 bits (72), Expect = 0.28, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 122 NDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
ND D+L K DI+ VV + EE WW ++G+ G P ++++ S
Sbjct: 20 ND-DELELKVGDIIEVVGEVEEGWWEGV-LNGKTGMFPSNFIKELS 63
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
+A YD++ DDL F K + +++ E WW A+++ +GE G IP YV
Sbjct: 8 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 58
>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42
Structures
pdb|1AWX|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, Minimized
Average Structure
Length = 67
Score = 42.4 bits (98), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
+T ++KV+A YD+ + +DL +K D ++ + WW A++ +G+ G IP YV +
Sbjct: 4 STSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTE 63
>pdb|2K79|A Chain A, Solution Structure Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
pdb|2K7A|A Chain A, Ensemble Structures Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
Length = 63
Score = 42.4 bits (98), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
VIA YD+ NDP +L + ++ ++ E HWW Q+ +G G P Y+ + S
Sbjct: 8 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVEKS 62
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM NMR
RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 42.4 bits (98), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
A YD++ DDL F K + +++ E WW +++ +GE G IP PY+
Sbjct: 12 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEVRSLTTGETGYIPSPYL 61
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
+A YD++ DL FKK + L +V+ E WW A ++ +G G IP YV
Sbjct: 4 VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGRTGYIPSNYV 54
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 42.4 bits (98), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQ 164
+V A YD+DG + D+L FK D L + +++E W + SG++G P YV+
Sbjct: 5 RVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVE 58
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 95 HYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGE 154
H +DT+P V+A YD+ N D+L + DI+ V KD E WW G+
Sbjct: 1 HQVDTAP----------TVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQ 50
Query: 155 VGSIPVPYV 163
G P +V
Sbjct: 51 EGYFPANHV 59
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
+A YD++ DDL F K + +++ E WW A+++ +GE G IP YV
Sbjct: 5 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3 Domain
Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
+A YD++ DDL F K + +++ E WW A+++ +GE G IP YV
Sbjct: 5 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55
>pdb|2RN8|A Chain A, Nmr Structure Note: Murine Itk Sh3 Domain
pdb|2RNA|A Chain A, Itk Sh3 Average Minimized
Length = 64
Score = 42.0 bits (97), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
VIA YD+ NDP +L + ++ ++ E HWW Q+ +G G P Y+ + S
Sbjct: 8 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVEKS 62
>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 90
Score = 42.0 bits (97), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISG-EVGSIPVPYVQK 165
V+A YD+ PDDL F+K D ++V+ + E WW A++++ + G IP YV +
Sbjct: 6 VVALYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVAR 58
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 42.0 bits (97), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFP 255
L+L++GDII+V G WEG LNGKTG FP
Sbjct: 35 LELKVGDIIEVVGEVEEGWWEGVLNGKTGMFP 66
Score = 32.0 bits (71), Expect = 0.41, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 122 NDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
ND D+L K DI+ VV + EE WW ++G+ G P ++++ S
Sbjct: 31 ND-DELELKVGDIIEVVGEVEEGWWEGV-LNGKTGMFPSNFIKELS 74
>pdb|1LUI|A Chain A, Nmr Structures Of Itk Sh2 Domain, Pro287cis Isoform,
Ensemble Of 20 Low Energy Structures
pdb|1LUK|A Chain A, Nmr Structure Of The Itk Sh2 Domain, Pro287cis, Energy
Minimized Average Structure
pdb|1LUM|A Chain A, Nmr Structure Of The Itk Sh2 Domain, Pro287trans, 20 Low
Energy Structures
pdb|1LUN|A Chain A, Nmr Structure Of The Itk Sh2 Domain, Pro287trans, Energy
Minimized Average Structure
Length = 110
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVSHYIINKI 66
WY ++R +A+ +LL GAF+VRDS T G Y + V EN + HY I K
Sbjct: 9 WYNKSISRDKAEKLLLDTGKEGAFMVRDSRTP-GTYTVSVFTKAIISENPCIKHYHI-KE 66
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYK 93
TN + Y F +P L+ +++
Sbjct: 67 TNDSPKRYYVAEKYVFDSIPLLIQYHQ 93
>pdb|2ETZ|A Chain A, The Nmr Minimized Average Structure Of The Itk Sh2
Domain Bound To A Phosphopeptide
pdb|2EU0|A Chain A, The Nmr Ensemble Structure Of The Itk Sh2 Domain Bound
To A Phosphopeptide
Length = 109
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVSHYIINKI 66
WY ++R +A+ +LL GAF+VRDS T G Y + V EN + HY I K
Sbjct: 9 WYNKSISRDKAEKLLLDTGKEGAFMVRDSRTP-GTYTVSVFTKAIISENPCIKHYHI-KE 66
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYK 93
TN + Y F +P L+ +++
Sbjct: 67 TNDSPKRYYVAEKYVFDSIPLLIQYHQ 93
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 107 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYV 163
T + +A YD++ +DL FKK + +++ E WW A++I+ G+ G IP YV
Sbjct: 24 TGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYV 81
>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 61
Score = 42.0 bits (97), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISG-EVGSIPVPYVQK 165
V+A YD+ PDDL F+K D ++V+ + E WW A++++ + G IP YV +
Sbjct: 6 VVALYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVAR 58
>pdb|2K79|B Chain B, Solution Structure Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
pdb|2K7A|B Chain B, Ensemble Structures Of The Binary Complex Between The
Sh3 And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
Length = 110
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVSHYIINKI 66
WY ++R +A+ +LL GAF+VRDS T G Y + V EN + HY I K
Sbjct: 10 WYNKSISRDKAEKLLLDTGKEGAFMVRDSRTP-GTYTVSVFTKAIISENPCIKHYHI-KE 67
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYK 93
TN + Y F +P L+ +++
Sbjct: 68 TNDSPKRYYVAEKYVFDSIPLLIQYHQ 94
>pdb|1KA6|A Chain A, SapSH2D1A BOUND TO PEPTIDE N-Py
pdb|1KA7|A Chain A, SapSH2D1A BOUND TO PEPTIDE N-Y-C
Length = 128
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
D + Y G ++R+ + +LL+ +G++L+RDS ++ G Y LCV + + Y +++
Sbjct: 2 DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTY---RVSQ 58
Query: 69 TE 70
TE
Sbjct: 59 TE 60
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
V A +DF+ + +L FK+ D++ +++KD+ +WW Q ++ G P YV Y+
Sbjct: 7 VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQ-LNNRRGIFPSNYVAPYN 60
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 199 HLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTH 258
H+E K V+ + N + L + GD+I + + WEG+LN + G FP +
Sbjct: 1 HMETKF-----VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNY 55
Query: 259 V 259
V
Sbjct: 56 V 56
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 41.6 bits (96), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+ IAK DF D+L FK+ DIL V++++ + W ++G+ G IP Y++
Sbjct: 2 EAIAKVDFKATADDELSFKRGDILKVLNEESDQNWYKAELNGKDGFIPKNYIE 54
>pdb|2KNO|A Chain A, Nmr Solution Structure Of Sh2 Domain Of The Human Tensin
Like C1 Domain Containing Phosphatase (Tenc1)
Length = 131
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK 53
WY ++R +A A LL +KD GAFL+RDS++ G Y L +K
Sbjct: 22 WYKPHLSRDQAIA-LLKDKDPGAFLIRDSHSFQGAYGLALK 61
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Hexagonal Crystal Obtained In Sodium Formate At
Ph 6.5
Length = 62
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
E V+A YD+ PD++ KK DIL +++ + WW + ++ G +P YV+K
Sbjct: 7 ELVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKK 60
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
L GD+I VT+ G WEG LNG+TG FP +V
Sbjct: 25 LSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYV 60
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
V AK++F + D+L F K D++ V +E WW ++G G P YV++
Sbjct: 11 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEG-TLNGRTGWFPSNYVRE 62
>pdb|2L6K|A Chain A, Solution Structure Of A Nonphosphorylated Peptide
Recognizing Domain
Length = 123
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK 53
WY ++R +A A LL +KD GAFL+RDS++ G Y L +K
Sbjct: 7 WYKPHLSRDQAIA-LLKDKDPGAFLIRDSHSFQGAYGLALK 46
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 7
Length = 57
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
E V+A YD+ PD++ KK DIL +++ + WW + ++ G +P YV+K
Sbjct: 2 ELVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKK 55
>pdb|1D4T|A Chain A, Crystal Structure Of The Xlp Protein Sap In Complex With
A Slam Peptide
pdb|1D4W|A Chain A, Crystal Structure Of The Xlp Protein Sap In Complex With
Slam Phosphopeptide
pdb|1D4W|B Chain B, Crystal Structure Of The Xlp Protein Sap In Complex With
Slam Phosphopeptide
pdb|1D1Z|A Chain A, Crystal Structure Of The Xlp Protein Sap
pdb|1D1Z|B Chain B, Crystal Structure Of The Xlp Protein Sap
pdb|1D1Z|C Chain C, Crystal Structure Of The Xlp Protein Sap
pdb|1D1Z|D Chain D, Crystal Structure Of The Xlp Protein Sap
pdb|1M27|A Chain A, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 104
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
D + Y G ++R+ + +LL+ +G++L+RDS ++ G Y LCV + + Y +++
Sbjct: 2 DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTY---RVSQ 58
Query: 69 TE 70
TE
Sbjct: 59 TE 60
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 41.6 bits (96), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
+A YD++ +DL FKK + +++ E WW A++I +G+ G IP YV
Sbjct: 9 VALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYV 59
>pdb|2DM0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Tyrosine-
Protein Kinase Txk
Length = 125
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNK------VSHYIINKI 66
WY +TR +A+ +L E GAF+VRDS LG+Y + V + + HY I K
Sbjct: 18 WYHRNITRNQAEHLLRQESKEGAFIVRDSRH-LGSYTISVFMGARRSTEAAIKHYQIKK- 75
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYK 93
+ Y F +P L+ +++
Sbjct: 76 --NDSGQWYVAERHAFQSIPELIWYHQ 100
>pdb|1MW4|A Chain A, Solution Structure Of The Human Grb7-Sh2 Domain In Complex
With A 10 Amino Acid Peptide Py1139
pdb|2QMS|A Chain A, Crystal Structure Of A Signaling Molecule
pdb|2QMS|B Chain B, Crystal Structure Of A Signaling Molecule
pdb|2QMS|C Chain C, Crystal Structure Of A Signaling Molecule
pdb|2QMS|D Chain D, Crystal Structure Of A Signaling Molecule
pdb|2L4K|A Chain A, Water Refined Solution Structure Of The Human Grb7-Sh2
Domain In Complex With The 10 Amino Acid Peptide Py1139
Length = 120
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 8 HDRNSWYFGMMTRQEAQAILLSEK-DNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
H W+ G ++R+E+Q ++ + +G FLVR+S +VL + KV HY+I +
Sbjct: 14 HRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLI--L 71
Query: 67 TNTEQQTCY---KIGDKTFSDLPSLLAFYKV 94
+ E+ Y G F+DL L+ F+++
Sbjct: 72 PSEEEGRLYFSMDDGQTRFTDLLQLVEFHQL 102
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 41.2 bits (95), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
+A YD++ DDL F K + +++ E WW A+++ +GE G IP YV
Sbjct: 19 VALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 69
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag
(Inset) Using A Sortase-Mediated Protein Ligation Method
Length = 142
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK-YSE 168
A+YDF D +L K+ DI+ +++K + W I G +G P YV++ YSE
Sbjct: 10 ARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSE 64
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 218 AYDKTALKLEIGDIIKV-TKTNINGQWEGELNGKTGHFPFTHVE 260
A D++ L L+ GDIIK+ K G W GE+ G+ G FP +VE
Sbjct: 16 ARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVE 59
>pdb|1NRV|A Chain A, Crystal Structure Of The Sh2 Domain Of Grb10
pdb|1NRV|B Chain B, Crystal Structure Of The Sh2 Domain Of Grb10
Length = 105
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 8 HDRNSWYFGMMTRQEAQAILLSEK-DNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
H W+ G ++R+E+ I+ + +G FL+RDS + +VL + + K+ ++ I
Sbjct: 2 HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPC 61
Query: 67 TNTEQQTCYKI--GDKTFSDLPSLLAFYKV 94
+ + QT + + G+ FSDL L+ FY++
Sbjct: 62 ED-DGQTFFSLDDGNTKFSDLIQLVDFYQL 90
>pdb|1W1F|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase
pdb|1WA7|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase In Complex With A
Herpesviral Ligand
Length = 65
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 6/56 (10%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQN-ISGEVGSIPVPYVQK 165
V+A Y +DG PDDL FKK + + V+ EEH WW A++ ++ + G IP YV K
Sbjct: 10 VVALYPYDGIHPDDLSFKKGEKMKVL---EEHGEWWKAKSLLTKKEGFIPSNYVAK 62
>pdb|3M7F|A Chain A, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 108
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 8 HDRNSWYFGMMTRQEAQAILLSEK-DNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
H W+ G ++R+E+ I+ + +G FL+RDS + +VL + + K+ ++ I
Sbjct: 2 HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPC 61
Query: 67 TNTEQQTCYKI--GDKTFSDLPSLLAFYKV 94
+ + QT + + G+ FSDL L+ FY++
Sbjct: 62 ED-DGQTFFSLDDGNTKFSDLIQLVDFYQL 90
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 41.2 bits (95), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
+A YD++ DDL F K + +++ E WW A+++ +GE G IP YV
Sbjct: 19 VALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 69
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
+A YD++ DDL F K + +++ E WW A+++ +GE G IP YV
Sbjct: 5 VALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55
>pdb|3PQZ|A Chain A, Grb7 Sh2 With Peptide
pdb|3PQZ|B Chain B, Grb7 Sh2 With Peptide
pdb|3PQZ|C Chain C, Grb7 Sh2 With Peptide
pdb|3PQZ|D Chain D, Grb7 Sh2 With Peptide
Length = 117
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 8 HDRNSWYFGMMTRQEAQAILLSEK-DNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
H W+ G ++R+E+Q ++ + +G FLVR+S +VL + KV HY+I +
Sbjct: 11 HRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLI--L 68
Query: 67 TNTEQQTCY---KIGDKTFSDLPSLLAFYKV 94
+ E+ Y G F+DL L+ F+++
Sbjct: 69 PSEEEGRLYFSMDDGQTRFTDLLQLVEFHQL 99
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 40.8 bits (94), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
E V+A YD+ P ++ KK DIL +++ + WW + ++ G +P YV+K +
Sbjct: 18 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLAAAW 76
Query: 171 S 171
S
Sbjct: 77 S 77
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 40.8 bits (94), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
E V+A YD+ P ++ KK DIL +++ + WW + ++ G +P YV+K
Sbjct: 6 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDPAQ 64
Query: 171 S 171
S
Sbjct: 65 S 65
>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine Kinase,
20 Structures
Length = 58
Score = 40.8 bits (94), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
++KV+A YD+ + +DL +K D ++ + WW A++ +G+ G IP YV +
Sbjct: 1 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTE 56
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
+A YD++ DDL F K + +++ E WW A+++ +GE G IP YV
Sbjct: 4 VALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54
>pdb|2LCT|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With
A Syk-Derived Doubly Phosphorylated Peptide
Length = 107
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
WY G M R A++IL + D G FLVR + + +K N +V H KI E
Sbjct: 11 WYAGPMERAGAESILANRSD-GTFLVRQRVKDAAEFAISIKYNVEVKHI---KIMTAE-- 64
Query: 73 TCYKIGD-KTFSDLPSLLAFYK 93
Y+I + K F L L+ FY+
Sbjct: 65 GLYRITEKKAFRGLTELVEFYQ 86
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
V A +DF+ + +L FK+ D++ +++KD+ +WW Q ++ G P YV Y+
Sbjct: 5 VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQ-LNNRRGIFPSNYVCPYN 58
Score = 30.8 bits (68), Expect = 0.97, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
N + L + GD+I + + WEG+LN + G FP +V
Sbjct: 12 NPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
>pdb|1CWD|L Chain L, Human P56lck Tyrosine Kinase Complexed With
Phosphopeptide
pdb|1CWE|A Chain A, Human P56lck Tyrosine Kinase Complexed With
Phosphopeptide
pdb|1CWE|C Chain C, Human P56lck Tyrosine Kinase Complexed With
Phosphopeptide
Length = 98
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 12 SWYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNK-----VSHYIINK 65
SW+F ++R++A+ LL+ + +G+FL+R+S + G++ L V++ ++ V HY K
Sbjct: 2 SWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY---K 58
Query: 66 ITNTEQQTCYKIGDKTFSDLPSLLAFY 92
I N + Y TF L L+ Y
Sbjct: 59 IRNLDNGGFYISPRITFPGLHELVRHY 85
>pdb|3US4|A Chain A, Crystal Structure Of A Sh2 Domain Of A
Megakaryocyte-Associated Tyrosine Kinase (Matk) From
Homo Sapiens At 1.50 A Resolution
Length = 98
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
W+ G ++ QEA L +D G FLVR+S G+YVLCV V HY +
Sbjct: 7 WFHGKISGQEAVQQLQPPED-GLFLVRESARHPGDYVLCVSFGRDVIHYRV 56
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
V A +DF+ + +L FK+ D++ +++KD+ +WW Q ++ G P YV Y+
Sbjct: 5 VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQ-LNNRRGIFPSNYVCPYN 58
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
N + L + GD+I + + WEG+LN + G FP +V
Sbjct: 12 NPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
E V+ YD+ P +L KK DIL +++ + WW + ++G G +P Y++K
Sbjct: 7 ELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIE-VNGRQGFVPAAYLKK 60
>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A
Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From
Homo Sapiens At 2.36 A Resolution
Length = 175
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNK-----VSHYIINKI 66
W+F ++R++A+ LL+ + +G+FL+R+S + G++ L V++ ++ V HY KI
Sbjct: 76 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY---KI 132
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFY 92
N + Y TF L L+ Y
Sbjct: 133 RNLDNGGFYISPRITFPGLHELVRHY 158
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQK 165
VIA + ++ + DL F+K + L ++ + E WW AQ+++ G+ G IP +V K
Sbjct: 15 VIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAK 67
>pdb|1FBZ|A Chain A, Structure-Based Design Of A Novel, Osteoclast-Selective,
Nonpeptide Src Sh2 Inhibitor With In Vivo
Anti-Resorptive Activity
pdb|1FBZ|B Chain B, Structure-Based Design Of A Novel, Osteoclast-Selective,
Nonpeptide Src Sh2 Inhibitor With In Vivo
Anti-Resorptive Activity
Length = 104
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNK-----VSHYIINKI 66
W+F ++R++A+ LL+ + +G+FL+R+S + G++ L V++ ++ V HY KI
Sbjct: 5 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFCLSVRDFDQNQGEVVKHY---KI 61
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFY 92
N + Y TF L L+ Y
Sbjct: 62 RNLDNGGFYISPRITFPGLHELVRHY 87
>pdb|1IJR|A Chain A, Crystal Structure Of Lck Sh2 Complexed With Nonpeptide
Phosphotyrosine Mimetic
Length = 104
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNK-----VSHYIINKI 66
W+F ++R++A+ LL+ + +G+FL+R+S + G++ L V++ ++ V HY KI
Sbjct: 5 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFCLSVRDFDQNQGEVVKHY---KI 61
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFY 92
N + Y TF L L+ Y
Sbjct: 62 RNLDNGGFYISPRITFPGLHELVRHY 87
>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase
Complexed With The 10 Residue Synthetic Phosphotyrosyl
Peptide Tegqpyqpqpa
Length = 175
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNK-----VSHYIINKI 66
W+F ++R++A+ LL+ + +G+FL+R+S + G++ L V++ ++ V HY KI
Sbjct: 76 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY---KI 132
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFY 92
N + Y TF L L+ Y
Sbjct: 133 RNLDNGGFYISPRITFPGLHELVRHY 158
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQK 165
VIA + ++ + DL F+K + L ++ + E WW AQ+++ G+ G IP +V K
Sbjct: 15 VIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAK 67
>pdb|1JWO|A Chain A, Crystal Structure Analysis Of The Sh2 Domain Of The Csk
Homologous Kinase Chk
Length = 97
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
W+ G ++ QEA L +D G FLVR+S G+YVLCV V HY +
Sbjct: 6 WFHGKISGQEAVQQLQPPED-GLFLVRESARHPGDYVLCVSFGRDVIHYRV 55
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
A YD++ DDL F K + +++ E WW A+++ +GE G IP Y+
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYL 59
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
E V+A YD+ P ++ KK DIL +++ + WW + ++ G +P YV+K
Sbjct: 7 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VADRQGFVPAAYVKK 60
>pdb|1H9O|A Chain A, Phosphatidylinositol 3-Kinase, P85-Alpha Subunit:
C-Terminal Sh2 Domain Complexed With A Tyr751
Phosphopeptide From The Pdgf Receptor, Crystal
Structure At 1.79 A
pdb|1PIC|A Chain A, Phosphatidylinositol 3-Kinase, P85-Alpha Subunit: C-
Terminal Sh2 Domain Complexed With A Tyr751
Phosphopeptide From The Pdgf Receptor, Nmr, Minimized
Mean Structure
Length = 112
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
HD +W G R +A+ +L ++D G FLVR+S+ G Y V + +V H +INK
Sbjct: 7 HDEKTWNVGSSNRNKAENLLRGKRD-GTFLVRESSK-QGCYACSVVVDGEVKHCVINK 62
>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|B Chain B, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|C Chain C, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|D Chain D, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
Length = 72
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 218 AYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
A + L E+GD I++ T +G EG L G+TG FP+ V+ P
Sbjct: 24 ALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLCP 69
Score = 28.1 bits (61), Expect = 6.6, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+A Y F +P++L F+ D + +++ E+ W ++ G G P +V+
Sbjct: 17 VALYRFQALEPNELDFEVGDKIRILATLEDGWLEG-SLKGRTGIFPYRFVK 66
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
Length = 167
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNK-----VSHYIINKI 66
W+F ++R++A+ LL+ + +G+FL+R+S + G++ L V++ ++ V HY KI
Sbjct: 68 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY---KI 124
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFY 92
N + Y TF L L+ Y
Sbjct: 125 RNLDNGGFYISPRITFPGLHELVRHY 150
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQK 165
VIA + ++ + DL F+K + L ++ + E WW AQ+++ G+ G IP +V K
Sbjct: 7 VIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAK 59
>pdb|1BHH|B Chain B, Free P56lck Sh2 Domain
Length = 103
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNK-----VSHYIINKI 66
W+F ++R++A+ LL+ + +G+FL+R+S + G++ L V++ ++ V HY KI
Sbjct: 4 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY---KI 60
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFY 92
N + Y TF L L+ Y
Sbjct: 61 RNLDNGGFYISPRITFPGLHELVRHY 86
>pdb|1LKL|A Chain A, Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex With
The Phosphotyrosyl Peptide Ac-Ptyr-Glu-Glu-Gly (Pyeeg
Peptide)
Length = 104
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNK-----VSHYIINKI 66
W+F ++R++A+ LL+ + +G+FL+R+S + G++ L V++ ++ V HY KI
Sbjct: 5 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY---KI 61
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFY 92
N + Y TF L L+ Y
Sbjct: 62 RNLDNGGFYISPRITFPGLHELVRHY 87
>pdb|1LKK|A Chain A, Human P56-Lck Tyrosine Kinase Sh2 Domain In Complex With
The Phosphotyrosyl Peptide Ac-Ptyr-Glu-Glu-Ile (Pyeei
Peptide)
Length = 105
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNK-----VSHYIINKI 66
W+F ++R++A+ LL+ + +G+FL+R+S + G++ L V++ ++ V HY KI
Sbjct: 6 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY---KI 62
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFY 92
N + Y TF L L+ Y
Sbjct: 63 RNLDNGGFYISPRITFPGLHELVRHY 88
>pdb|1QAD|A Chain A, Crystal Structure Of The C-Terminal Sh2 Domain Of The
P85 Alpha Regulatory Subunit Of Phosphoinositide
3-Kinase: An Sh2 Domain Mimicking Its Own Substrate
Length = 111
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
HD +W G R +A+ +L ++D G FLVR+S+ G Y V + +V H +INK
Sbjct: 6 HDEKTWNVGSSNRNKAENLLRGKRD-GTFLVRESSK-QGCYACSVVVDGEVKHCVINK 61
>pdb|1BHF|A Chain A, P56lck Sh2 Domain Inhibitor Complex
pdb|1BHH|A Chain A, Free P56lck Sh2 Domain
Length = 108
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNK-----VSHYIINKI 66
W+F ++R++A+ LL+ + +G+FL+R+S + G++ L V++ ++ V HY KI
Sbjct: 9 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY---KI 65
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFY 92
N + Y TF L L+ Y
Sbjct: 66 RNLDNGGFYISPRITFPGLHELVRHY 91
>pdb|1BFI|A Chain A, Solution Structure Of The C-Terminal Sh2 Domain Of The
P85alpha Regulatory Subunit Of Phosphoinositide
3-Kinase, Nmr, 30 Structures
pdb|1BFJ|A Chain A, Solution Structure Of The C-Terminal Sh2 Domain Of The
P85alpha Regulatory Subunit Of Phosphoinositide
3-Kinase, Nmr, Minimized Average Structure
Length = 112
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT 67
HD +W G R +A+ +L ++D G FLVR+S+ G Y V + +V H +INK
Sbjct: 7 HDEKTWNVGSSNRNKAENLLRGKRD-GTFLVRESSK-QGCYACSVVVDGEVKHCVINKTA 64
Query: 68 NTEQQTCYKIGD--KTFSDLPSLLAFYK 93
T Y + +S L L+ Y+
Sbjct: 65 -----TGYGFAEPYNLYSSLKELVLHYQ 87
>pdb|2JXB|A Chain A, Structure Of Cd3epsilon-Nck2 First Sh3 Domain Complex
Length = 86
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
VIAK+D+ +L KKN+ L ++ D + WW +N + G +P YV++
Sbjct: 34 VIAKWDYTAQQDQELDIKKNERLWLLD-DSKTWWRVRNAANRTGYVPSNYVER 85
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
E V+A YD+ P ++ KK DIL +++ + WW + ++ G +P YV+K
Sbjct: 6 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKK 59
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
+EKV+A YD+ + D+L F++ I+ V+ K+++ W+ ++G G P YV+ S
Sbjct: 17 LEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGV-MNGVTGLFPGNYVESIS 73
Score = 35.8 bits (81), Expect = 0.027, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
L + G II V K N +G +EG +NG TG FP +VE I
Sbjct: 34 LSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESI 72
>pdb|1LCJ|A Chain A, Sh2 (Src Homology-2) Domain Of Human P56-Lck Tyrosine
Kinase Complexed With The 11 Residue Phosphotyrosyl
Peptide Epqpyeeipiyl
Length = 109
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 13 WYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVKENNK-----VSHYIINKI 66
W+F ++R++A+ LL+ + +G+FL+R+S + G++ L V++ ++ V HY KI
Sbjct: 10 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY---KI 66
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFY 92
N + Y TF L L+ Y
Sbjct: 67 RNLDNGGFYISPRITFPGLHELVRHY 92
>pdb|3HHM|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha And The Drug Wortmannin
pdb|3HIZ|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha
Length = 373
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
HD +W G R +A+ +L ++D G FLVR+S+ G Y V + +V H +INK
Sbjct: 298 HDEKTWNVGSSNRNKAENLLRGKRD-GTFLVRESSK-QGCYACSVVVDGEVKHCVINK 353
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTIL-GNYVLCVKE--NNKV 58
WY+G ++R+E L D G FLVRD++T + G+Y L +++ NNK+
Sbjct: 12 WYWGDISREEVNEKLRDTAD-GTFLVRDASTKMHGDYTLTLRKGGNNKL 59
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of P67phox
Complexed With The C-Terminal Tail Region Of P47phox
Length = 62
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+V A + ++ P+DL F++ DI++V+SK E W ++ G+VG P +V+
Sbjct: 7 QVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGES-KGKVGIFPKVFVE 58
Score = 30.8 bits (68), Expect = 0.90, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 212 QVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVE 260
QV +Y+ T L+ + GDII V + +N +W EGE GK G FP VE
Sbjct: 7 QVEALFSYEATQPEDLEFQEGDIILVL-SKVNEEWLEGESKGKVGIFPKVFVE 58
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
E V+A YD+ P ++ KK DIL +++ + WW + ++ G +P YV+K
Sbjct: 7 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGYVPAAYVKK 60
>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70
Length = 613
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 8 HDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
H+R WY +TR+EA+ L S + +G FL+R G Y L + V HY+I++
Sbjct: 158 HERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKE-QGTYALSLIYGKTVYHYLISQ- 215
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKV 94
+ + C G K F L L+ + K+
Sbjct: 216 -DKAGKYCIPEGTK-FDTLWQLVEYLKL 241
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 6 DPHDRNSWYFGMMTRQEAQAIL-LSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
DP +++G ++R EA+ L L+ +G FL+R LG YVL + + + H+ I
Sbjct: 3 DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIE 62
Query: 65 KITNTEQQTCYKI-GDKTFSDLPSLLAFY 92
+ N Y I G K L FY
Sbjct: 63 RQLNGT----YAIAGGKAHCGPAELCEFY 87
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+ IAK+DF D+L F+K IL +++ +++ W + G+ G IP Y++
Sbjct: 2 EAIAKHDFSATADDELSFRKGQILKILNMEDDSNWYRAELDGKEGLIPSNYIE 54
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
E V+A YD+ P ++ KK DIL +++ + WW + ++ G +P YV+K
Sbjct: 7 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKK 60
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3 Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured At
Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
E V+A YD+ P ++ KK DIL +++ + WW + ++ G +P YV+K
Sbjct: 7 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKK 60
>pdb|2B86|A Chain A, Solution Structure Of The First Src Homology 3 Domain Of
Nck2
Length = 67
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
VIAK+D+ +L KKN+ L ++ D + WW +N + G +P YV++ E
Sbjct: 7 VIAKWDYTAQQDQELDIKKNERLWLLD-DSKTWWRVRNAANRTGYVPSNYVERKLE 61
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
E V+A YD+ P ++ KK DIL +++ + WW + ++ G +P YV+K
Sbjct: 7 ELVLALYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKK 60
>pdb|2OQ1|A Chain A, Tandem Sh2 Domains Of Zap-70 With 19-Mer Zeta1 Peptide
Length = 254
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 8 HDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
H+R WY +TR+EA+ L S + +G FL+R G Y L + V HY+I++
Sbjct: 156 HERXPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKE-QGTYALSLIYGKTVYHYLISQ- 213
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKV 94
+ + C G K F L L+ + K+
Sbjct: 214 -DKAGKYCIPEGTK-FDTLWQLVEYLKL 239
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 6 DPHDRNSWYFGMMTRQEAQAIL-LSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
DP +++G ++R EA+ L L+ +G FL+R LG YVL + + + H+ I
Sbjct: 1 DPAAHLPFFYGSISRAEAEEHLKLAGXADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIE 60
Query: 65 KITNTEQQTCYKI-GDKTFSDLPSLLAFY 92
+ N Y I G K L FY
Sbjct: 61 RQLNGT----YAIAGGKAHCGPAELCEFY 85
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
E V+A YD+ P ++ KK DIL +++ + WW + ++ G +P YV+K
Sbjct: 7 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPASYVKK 60
>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|B Chain B, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|C Chain C, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|D Chain D, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
Length = 89
Score = 38.9 bits (89), Expect = 0.003, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIPVPYV 163
A +D++ ++L ++ D + V+S+D +E WWT Q SG VG P YV
Sbjct: 34 AVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYV 87
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
E V+A YD+ P ++ KK DIL +++ + WW + ++ G +P YV+K
Sbjct: 7 ELVLALYDYQEKSPAEVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKK 60
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
L GD+I VT+ G WEG NG+TG FP +V I
Sbjct: 23 LSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 61
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
V AK++F + D+L F K D++ V +E WW + +G G P YV++
Sbjct: 9 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTH-NGRTGWFPSNYVRE 60
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 38.9 bits (89), Expect = 0.003, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+ IAK+DF D+L F+K IL +++ +++ W + G+ G IP Y++
Sbjct: 2 EAIAKHDFSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYIE 54
>pdb|1M61|A Chain A, Crystal Structure Of The Apo Sh2 Domains Of Zap-70
Length = 259
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 8 HDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
H+R WY +TR+EA+ L S + +G FL+R G Y L + V HY+I++
Sbjct: 161 HERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKE-QGTYALSLIYGKTVYHYLISQ- 218
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKV 94
+ + C G K F L L+ + K+
Sbjct: 219 -DKAGKYCIPEGTK-FDTLWQLVEYLKL 244
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 6 DPHDRNSWYFGMMTRQEAQAIL-LSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
DP +++G ++R EA+ L L+ +G FL+R LG YVL + + + H+ I
Sbjct: 6 DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIE 65
Query: 65 KITNTEQQTCYKI-GDKTFSDLPSLLAFY 92
+ N Y I G K L FY
Sbjct: 66 RQLNGT----YAIAGGKAHCGPAELCEFY 90
>pdb|1U5S|A Chain A, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain And
Pinch-1 Lim4 Domain
Length = 71
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE--HWWTAQNISGEVGSIPVPYV 163
++ + V Y F ++L F+K + + V+ K E WW +N G+VG +P YV
Sbjct: 2 GSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 61
Query: 164 QKYSEGMSI 172
S+G ++
Sbjct: 62 VVLSDGPAL 70
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
E V+A YD+ P ++ KK DIL +++ + WW + ++ G +P YV+K
Sbjct: 7 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAGYVKK 60
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 38.5 bits (88), Expect = 0.004, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 117 YDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
YDF+ + +L FK+ DI+ + ++ +E+W+ I GE G P+ YV+
Sbjct: 10 YDFEPENQGELGFKEGDIITLTNQIDENWYEGM-IHGESGFFPINYVE 56
Score = 31.6 bits (70), Expect = 0.49, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 220 DKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
++ L + GDII +T +EG ++G++G FP +VE I
Sbjct: 16 NQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVI 58
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
E V+A YD+ P ++ KK DIL +++ + WW + + G +P YV+K
Sbjct: 7 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VGDRQGFVPAAYVKK 60
>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|B Chain B, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|E Chain E, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|C Chain C, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|D Chain D, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|F Chain F, Src Family Kinase Hck Sh3 Domain
Length = 57
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISG-EVGSIPVPYVQK 165
V+A YD++ +DL F+K D ++V+ + E WW A++++ + G IP YV +
Sbjct: 3 VVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVAR 55
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4 And
Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
Length = 59
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
L GD+I VT+ G WEG NG+TG FP +V I
Sbjct: 21 LSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 59
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
V AK++F + D+L F K D++ V +E WW + +G G P YV++
Sbjct: 7 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTH-NGRTGWFPSNYVRE 58
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
Length = 61
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
L GD+I VT+ G WEG NG+TG FP +V I
Sbjct: 23 LSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 61
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
V AK++F + D+L F K D++ V +E WW + +G G P YV++
Sbjct: 9 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTH-NGRTGWFPSNYVRE 60
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 38.1 bits (87), Expect = 0.005, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
+A YD++ DL F K + ++ D WW A+++ +GE G IP YV
Sbjct: 10 VALYDYNATRWTDLSFHKGEKFQILDGDSGDWWEARSLTTGETGYIPSNYV 60
>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK|A Chain A, Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 38.1 bits (87), Expect = 0.005, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISG-EVGSIPVPYVQK 165
V+A YD++ +DL F+K D ++V+ + E WW A++++ + G IP YV +
Sbjct: 12 VVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVAR 64
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l Mutant
Length = 62
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
E V+ YD+ P +L KK DIL +++ + WW + ++ G IP Y++K
Sbjct: 7 ELVLVLYDYQEKSPRELTIKKGDILTLLNSTNKDWWKVE-VNDRQGFIPAAYLKK 60
>pdb|1R1P|A Chain A, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|B Chain B, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|C Chain C, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (lat) By The Adaptor Protein Gads
pdb|1R1P|D Chain D, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (lat) By The Adaptor Protein Gads
pdb|1R1Q|A Chain A, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
pdb|1R1Q|B Chain B, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|A Chain A, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|C Chain C, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|E Chain E, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
pdb|1R1S|G Chain G, Structural Basis For Differential Recognition Of
Tyrosine Phosphorylated Sites In The Linker For
Activation Of T Cells (Lat) By The Adaptor Protein Gads
Length = 100
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYI 62
G+F + W+ ++R +A+ +L+ KD G F++R S + G++ + V+ + V H+
Sbjct: 1 GSFIDIEFPEWFHEGLSRHQAENLLMG-KDIGFFIIRASQSSPGDFSISVRHEDDVQHFK 59
Query: 63 INKITNTEQQTCYKIGDKTFSDLPSLLAFYK 93
+ + T + Y + + F L L+ +Y+
Sbjct: 60 VMRDT----KGNYFLWTEKFPSLNKLVDYYR 86
>pdb|2HDV|A Chain A, Crystal Structure Of The Src Homology-2 Domain Of The
Adapter Protein Sh2-B
pdb|2HDV|B Chain B, Crystal Structure Of The Src Homology-2 Domain Of The
Adapter Protein Sh2-B
pdb|2HDX|A Chain A, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B
In Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|B Chain B, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B
In Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|C Chain C, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B
In Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|D Chain D, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B
In Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|E Chain E, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B
In Complex With Jak2 Ptyr813 Phosphopeptide
pdb|2HDX|F Chain F, Crystal Structure Of The Src Homology-2 Domain Of Sh2-B
In Complex With Jak2 Ptyr813 Phosphopeptide
Length = 111
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 3 GTFDPHDRNSWYFGMMTRQEAQAILL--SEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
G+ P W+ GM++R +A ++L +G FLVR S T G VL K H
Sbjct: 1 GSDQPLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKH 60
Query: 61 YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
+++ C ++ F + +L ++VH
Sbjct: 61 L---RLSLNAAGQC-RVQHLHFQSIFDMLEHFRVH 91
>pdb|1AOJ|A Chain A, The Sh3 Domain Of Eps8 Exists As A Novel Intertwined Dimer
pdb|1AOJ|B Chain B, The Sh3 Domain Of Eps8 Exists As A Novel Intertwined Dimer
pdb|1I07|A Chain A, Eps8 Sh3 Domain Intertwined Dimer
pdb|1I07|B Chain B, Eps8 Sh3 Domain Intertwined Dimer
pdb|1I0C|A Chain A, Eps8 Sh3 Closed Monomer
pdb|1I0C|B Chain B, Eps8 Sh3 Closed Monomer
Length = 60
Score = 38.1 bits (87), Expect = 0.006, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIP 159
+KYDF + +L K+D+L ++ D WW +N SG+ G +P
Sbjct: 6 SKYDFVARNSSELSVMKDDVLEILD-DRRQWWKVRNASGDSGFVP 49
>pdb|2K2M|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3 Binding
Length = 68
Score = 37.7 bits (86), Expect = 0.007, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMS 171
V+ YDF + +L K+ D+L V+ D WW ++ +G+ G +P + Y S
Sbjct: 11 VLCNYDFQARNSSELSVKQRDVLEVLD-DSRKWWKVRDPAGQEGYVPYNILTPYPAAAS 68
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
Length = 86
Score = 37.7 bits (86), Expect = 0.007, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 100 SPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISG-EVGSI 158
+P I+ A V+A YD++ +DL F+K D ++V+ + E WW A++++ + G I
Sbjct: 15 TPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYI 73
Query: 159 PVPYVQK 165
P YV +
Sbjct: 74 PSNYVAR 80
>pdb|1WX6|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck2
Length = 91
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 108 KTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE--HWWTAQNISGEVGSIPVPYVQK 165
+ + V Y F ++L F+K + + V+ K E WW +N G+VG +P YV
Sbjct: 15 RVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVV 74
Query: 166 YSEGMSI 172
S+G ++
Sbjct: 75 LSDGPAL 81
>pdb|1BLJ|A Chain A, Nmr Ensemble Of Blk Sh2 Domain, 20 Structures
pdb|1BLK|A Chain A, Nmr Ensemble Of Blk Sh2 Domain Using Chemical Shift
Refinement, 20 Structures
Length = 114
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 13 WYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVK----ENNKVSHYIINKIT 67
W+F ++R++A+ LL+ + G+FL+R+S + G + L VK + V HY I +
Sbjct: 14 WFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLD 73
Query: 68 NTEQQTCYKIGDKTFSDLPSLLAFY 92
N +I TF L +L+ Y
Sbjct: 74 NGGYYISPRI---TFPTLQALVQHY 95
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 37.7 bits (86), Expect = 0.008, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 7/64 (10%)
Query: 101 PLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPV 160
PL +P+ K A YDF+ + +L F++ D++ + ++ +E+W+ + G+ G P+
Sbjct: 10 PLDQPSCK------ALYDFEPENDGELGFREGDLITLTNQIDENWYEGX-LHGQSGFFPL 62
Query: 161 PYVQ 164
YVQ
Sbjct: 63 SYVQ 66
Score = 30.4 bits (67), Expect = 1.2, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 229 GDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
GD+I +T +EG L+G++G FP ++V+ +
Sbjct: 35 GDLITLTNQIDENWYEGXLHGQSGFFPLSYVQVL 68
>pdb|2JW4|A Chain A, Nmr Solution Structure Of The N-Terminal Sh3 Domain Of
Human Nckalpha
Length = 72
Score = 37.4 bits (85), Expect = 0.009, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
V+AK+D+ +L KKN+ L ++ D + WW +N + G +P YV++
Sbjct: 10 VVAKFDYVAQQEQELDIKKNERLWLLD-DSKSWWRVRNSMNKTGFVPSNYVER 61
>pdb|2JT4|A Chain A, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
Length = 71
Score = 37.4 bits (85), Expect = 0.009, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKND-ILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
A+K+ ++ I +YDF D+L K D + I+ K + WW Q + SG+ G +P ++
Sbjct: 2 ASKSKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFI 61
Query: 164 Q 164
+
Sbjct: 62 E 62
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In Complex
With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 37.4 bits (85), Expect = 0.009, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
A YDF+ + +L FK+ DI+ + ++ +E+W+ + G+ G P+ YV+
Sbjct: 16 ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGM-LHGQSGFFPINYVE 64
Score = 32.3 bits (72), Expect = 0.29, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
L + GDII +T +EG L+G++G FP +VE +
Sbjct: 28 LGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYVEIL 66
>pdb|1Z9Z|A Chain A, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|1Z9Z|B Chain B, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|A Chain A, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|B Chain B, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain 3
Length = 60
Score = 37.4 bits (85), Expect = 0.009, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKND-ILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQ 164
+E+ I +YDF D+L K D + I+ K + WW Q + SG+ G +P +++
Sbjct: 2 MERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE 58
>pdb|2JS2|A Chain A, Solution Structure Of First Sh3 Domain Of Adaptor Nck
Length = 63
Score = 37.4 bits (85), Expect = 0.010, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
V+AK+D+ +L KKN+ L ++ D + WW +N + G +P YV++
Sbjct: 9 VVAKFDYVAQQEQELDIKKNERLWLLD-DSKSWWRVRNSMNKTGFVPSNYVER 60
>pdb|2Y3A|B Chain B, Crystal Structure Of P110beta In Complex With Icsh2 Of
P85beta And The Drug Gdc-0941
Length = 302
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
H+ +WY G + R +A+ +LS K +G FL+R+S+ G Y V + H +I +
Sbjct: 191 HEERTWYVGKINRTQAEE-MLSGKRDGTFLIRESSQ-RGCYACSVVVDGDTKHCVIYR 246
>pdb|2LNW|A Chain A, Identification And Structural Basis For A Novel
Interaction Between Vav2 And Arap3
pdb|2LNX|A Chain A, Solution Structure Of Vav2 Sh2 Domain
Length = 122
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
W+ G M RQ+ +L S +G +L+R+ + + +K N++V H I E+
Sbjct: 24 WFAGNMERQQTDNLLKSHA-SGTYLIRERPAEAERFAISIKFNDEVKH-----IKVVEKD 77
Query: 73 TCYKIGD-KTFSDLPSLLAFYKVHYLDTS 100
I + K F L L+ +Y+ H L S
Sbjct: 78 NWIHITEAKKFDSLLELVEYYQCHSLKES 106
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 37.4 bits (85), Expect = 0.011, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 218 AYDKTALKLEIGDIIKVTKT--NINGQWEGELNGKTGHFPFTHVE 260
A D L L GD++++ G W+GE NG+ G FP T+VE
Sbjct: 18 ARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 62
>pdb|2OAW|A Chain A, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|B Chain B, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|C Chain C, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|D Chain D, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
Length = 65
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ---NISGEV----GSIPVPYV 163
E V+A YD+ P ++ KK DIL +++ + WW + ++G+ G +P YV
Sbjct: 2 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 61
Query: 164 QK 165
+K
Sbjct: 62 KK 63
>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh
Length = 70
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ---NISGEV----GSIPVPYV 163
E V+A YD+ P ++ KK DIL +++ + WW + ++G+ G +P YV
Sbjct: 7 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 66
Query: 164 QK 165
+K
Sbjct: 67 KK 68
>pdb|2ROL|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3 Binding
Length = 64
Score = 37.0 bits (84), Expect = 0.012, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
V+ YDF + +L K+ D+L V+ D WW ++ +G+ G +P + Y
Sbjct: 10 VLCNYDFQARNSSELSVKQRDVLEVLD-DSRKWWKVRDPAGQEGYVPYNILTPY 62
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
Query: 113 VIAKYDFDGNDPDDLP-----FKKNDILIVVSKDEEHWWTAQNISG-----EVGSIP 159
V A +D+D N D LP FK DIL V + ++ WW A+ + G ++G +P
Sbjct: 8 VRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVP 64
>pdb|2DLZ|A Chain A, Solution Structure Of The Sh2 Domain Of Human Protein
Vav-2
Length = 118
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
W+ G M RQ+ +L S +G +L+R+ + + +K N++V H I E+
Sbjct: 18 WFAGNMERQQTDNLLKSHA-SGTYLIRERPAEAERFAISIKFNDEVKH-----IKVVEKD 71
Query: 73 TCYKIGD-KTFSDLPSLLAFYKVHYLDTS 100
I + K F L L+ +Y+ H L S
Sbjct: 72 NWIHITEAKKFDSLLELVEYYQCHSLKES 100
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
E V+ YD+ P +L KK DIL +++ + WW + ++ G +P Y++K
Sbjct: 7 ELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIE-VNDRQGFVPAAYLKK 60
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin
And Sh3 Domain-Containing Protein 1
Length = 68
Score = 37.0 bits (84), Expect = 0.013, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
AK+DF +LP +K DI+ + + +++W+ ++ G VG P Y++ S
Sbjct: 12 AKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEH-HGRVGIFPRTYIELLS 63
Score = 33.1 bits (74), Expect = 0.18, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
L L+ GDI+ + K +EGE +G+ G FP T++E +
Sbjct: 24 LPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELL 62
>pdb|2DL5|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Kiaa0769 Protein
Length = 78
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 117 YDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVPYVQ 164
Y + + PD+L +++++L V+ D E W A+N G+VG +P Y+Q
Sbjct: 20 YSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQ 68
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 218 AYDKTALKLEIGDIIK-VTKTNIN-GQWEGELNGKTGHFPFTHVEFIP 263
A + L ++ GDI+ + K I+ G WEGELNG+ G FP V+ +P
Sbjct: 20 AQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLP 67
>pdb|2GNC|A Chain A, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
pdb|2GNC|B Chain B, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
Length = 60
Score = 37.0 bits (84), Expect = 0.014, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
E IAK+D+ G +L FKK L++ + E WW ++ +G G +P Y+
Sbjct: 7 EFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRH-NGIDGLVPHQYI 58
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 37.0 bits (84), Expect = 0.014, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
KV A YDF+ + ++L FK +I+ V+ + +WW + G +G P +V
Sbjct: 19 KVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQG-IGLFPSNFV 69
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain
From Human Cd2ap (Cms) In Complex With A Proline-Rich
Peptide From Human Rin3
Length = 65
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 205 PAFARVKQVRVPNAY---DKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
P ++ +Q +V Y ++ L+L++GDII + + G W G LN K G FP V
Sbjct: 2 PLGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFV 59
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
A Y F+ PD+L F++ DI+ + + +WW + G G IP YV + S
Sbjct: 12 ALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTS-KGRTGLIPSNYVAEQS 63
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
L E GDII +T + W+G G+TG P +V
Sbjct: 24 LYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 59
>pdb|2VKN|A Chain A, Yeast Sho1 Sh3 Domain Complexed With A Peptide From Pbs2
Length = 70
Score = 36.6 bits (83), Expect = 0.018, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 126 DLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
++ F++N+IL VS E WW A+ +GE G IP YVQ
Sbjct: 23 EISFEQNEIL-QVSDIEGRWWKARRANGETGIIPSNYVQ 60
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 36.2 bits (82), Expect = 0.019, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 218 AYDKTALKLEIGDIIK-VTKTNIN-GQWEGELNGKTGHFPFTHVEFIPTNE 266
A + L ++ GDI+ + K I+ G WEGELNG+ G FP V+ +P E
Sbjct: 13 AQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPLE 63
Score = 28.9 bits (63), Expect = 3.4, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQ 164
KVI + ++ + D+L K+ DI+ +++KD + WW + ++G G P +V+
Sbjct: 6 KVI--FPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE-LNGRRGVFPDNFVK 57
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 36.2 bits (82), Expect = 0.019, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
A YDF+ + +L FK+ DI+ + ++ +E+W+ + G G P+ YV+
Sbjct: 12 ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGM-LHGHSGFFPINYVE 60
Score = 31.6 bits (70), Expect = 0.60, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
L + GDII +T +EG L+G +G FP +VE +
Sbjct: 24 LGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEIL 62
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
A Y F+ PD+L F++ DI+ + + +WW + G G IP YV +
Sbjct: 8 ALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTS-KGRTGLIPSNYVAE 57
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
L E GDII +T + W+G G+TG P +V
Sbjct: 20 LYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 55
>pdb|2EKX|A Chain A, Solution Structure Of The Human Bmx Sh2 Domain
Length = 110
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVSHYI 62
D W+ G ++R +++ +L + GAF+VR+S+ + G Y + + + V HY
Sbjct: 9 DDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSSQV-GMYTVSLFSKAVNDKKGTVKHYH 67
Query: 63 INKITNTEQQTCYKIGDKTFSDLPSLLAFYK 93
++ TN E + Y + F +P L+ +++
Sbjct: 68 VH--TNAENK-LYLAENYCFDSIPKLIHYHQ 95
>pdb|1NM7|A Chain A, Solution Structure Of The Scpex13p Sh3 Domain
Length = 69
Score = 36.2 bits (82), Expect = 0.022, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 115 AKYDFDGNDPD-DLPFKKNDILIVVSKDE-----EHWWTAQNISGEVGSIPVPYVQ 164
A YDF +P+ ++ KK D++ ++SK + WW + +G +G IP Y++
Sbjct: 12 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 67
>pdb|2KR3|A Chain A, Solution Structure Of Sha-D
Length = 70
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWW------TAQNISGEV-GSIPVPYV 163
E V+A YD+ P ++ KK DIL +++ + WW TA + + E G +P YV
Sbjct: 7 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANDKTYERQGFVPAAYV 66
Query: 164 QK 165
+K
Sbjct: 67 KK 68
>pdb|2RD0|B Chain B, Structure Of A Human P110alpha/p85alpha Complex
pdb|4A55|B Chain B, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 279
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTIL-GNYVLCVKE--NNKV 58
WY+G ++R+E L D G FLVRD++T + G+Y L +++ NNK+
Sbjct: 12 WYWGDISREEVNEKLRDTAD-GTFLVRDASTKMHGDYTLTLRKGGNNKL 59
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 35.8 bits (81), Expect = 0.027, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
A YDF+ + D+L F+ +++ V+ WWT + + ++G P YV
Sbjct: 6 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGR-LHNKLGLFPANYV 53
Score = 27.7 bits (60), Expect = 8.5, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 218 AYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
A ++ L G++++V ++ W G L+ K G FP +V
Sbjct: 12 ALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 53
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 35.8 bits (81), Expect = 0.027, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
A YDF+ + D+L F+ +++ V+ WWT + + ++G P YV
Sbjct: 10 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGR-LHNKLGLFPANYV 57
Score = 27.7 bits (60), Expect = 8.5, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 218 AYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
A ++ L G++++V ++ W G L+ K G FP +V
Sbjct: 16 ALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 57
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 35.8 bits (81), Expect = 0.027, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
A YDF+ + D+L F+ +++ V+ WWT + + ++G P YV
Sbjct: 8 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGR-LHNKLGLFPANYV 55
Score = 27.7 bits (60), Expect = 8.5, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 218 AYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
A ++ L G++++V ++ W G L+ K G FP +V
Sbjct: 14 ALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 55
>pdb|2V1R|A Chain A, Yeast Pex13 Sh3 Domain Complexed With A Peptide From Pex14
At 2.1 A Resolution
pdb|2V1R|B Chain B, Yeast Pex13 Sh3 Domain Complexed With A Peptide From Pex14
At 2.1 A Resolution
Length = 80
Score = 35.8 bits (81), Expect = 0.027, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 110 IEKVIAKYDFDGNDPD-DLPFKKNDILIVVSKDE-----EHWWTAQNISGEVGSIPVPYV 163
+E A YDF +P+ ++ KK D++ ++SK + WW + +G +G IP Y+
Sbjct: 14 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYI 73
Query: 164 Q 164
+
Sbjct: 74 E 74
>pdb|2RMO|A Chain A, Solution Structure Of Alpha-Spectrin_sh3-Bergerac From
Chicken
Length = 70
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ---NISGEV----GSIPVPYV 163
E V+A YD+ P ++ KK DIL +++ + WW + +G+ G +P YV
Sbjct: 7 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANGKTYERQGFVPAAYV 66
Query: 164 QK 165
+K
Sbjct: 67 KK 68
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
A Y F+ PD+L ++ DI+ + + +WW + G G IP YV + +E +
Sbjct: 19 ALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTS-KGRTGLIPSNYVAEQAESI 73
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
L +E GDII +T + W+G G+TG P +V
Sbjct: 31 LYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYV 66
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 35.8 bits (81), Expect = 0.030, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 218 AYDKTALKLEIGDIIK-VTKTNIN-GQWEGELNGKTGHFPFTHVEFIP 263
A + L ++ GDI+ + K I+ G WEGELNG+ G FP V+ +P
Sbjct: 14 AQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLP 61
Score = 28.5 bits (62), Expect = 4.2, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 117 YDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQ 164
+ ++ + D+L K+ DI+ +++KD + WW + ++G G P +V+
Sbjct: 10 FPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE-LNGRRGVFPDNFVK 58
>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l Mutant
Length = 62
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
E V+ YD+ P ++ KK DIL +++ + WW + + G IP Y++K
Sbjct: 7 ELVLVLYDYQEKSPREVTVKKGDILTLLNSTNKDWWKVE-VDDRQGFIPAAYLKK 60
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
E V+A YD+ ++ KK DIL +++ + WW + ++ G +P YV+K
Sbjct: 2 ELVLALYDYQEKGDSEVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKK 55
>pdb|2IUG|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain
pdb|2IUH|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With C-Kit Phosphotyrosyl Peptide
pdb|2IUI|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With Pdgfr Phosphotyrosyl Peptide
pdb|2IUI|B Chain B, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With Pdgfr Phosphotyrosyl Peptide
Length = 120
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTIL-GNYVLCVKE--NNKV 58
WY+G ++R+E L D G FLVRD++T + G+Y L +++ NNK+
Sbjct: 13 WYWGDISREEVNEKLRDTAD-GTFLVRDASTKMHGDYTLTLRKGGNNKL 60
>pdb|2PNA|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of
Phosphatidylinositol-3-Oh Kinase
pdb|2PNB|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of
Phosphatidylinositol-3-Oh Kinase
Length = 104
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTIL-GNYVLCVKE--NNKV 58
WY+G ++R+E L D G FLVRD++T + G+Y L +++ NNK+
Sbjct: 6 WYWGDISREEVNEKLRDTAD-GTFLVRDASTKMHGDYTLTLRKGGNNKL 53
>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold
Proteins As Specific Phospho-Protein Binding Modules
Length = 296
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 113 VIAKYDFDGNDPDDLP-----FKKNDILIVVSKDEEHWWTAQNI-----SGEVGSIP 159
V A +D+D LP FK DIL V++ ++ WW A+ + S EVG IP
Sbjct: 14 VRALFDYDKTKDSGLPSQGLNFKFGDILHVINASDDEWWQARQVTPDGESDEVGVIP 70
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
E V+ YD+ P ++ KK DIL +++ + WW + ++ G +P Y++K
Sbjct: 7 ELVLVLYDYQEKSPREVTIKKGDILTLLNSTNKDWWKIE-VNDRQGFVPAAYLKK 60
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 35.4 bits (80), Expect = 0.034, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
A YDF+ + D+L F+ +++ V+ WWT + + ++G P YV
Sbjct: 7 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGR-LHNKLGLFPANYV 54
Score = 27.3 bits (59), Expect = 9.6, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 218 AYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
A ++ L G++++V ++ W G L+ K G FP +V
Sbjct: 13 ALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 54
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 35.4 bits (80), Expect = 0.034, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
+V A YDF+ + ++L FK +++ V+ + +WW +N G G P +V
Sbjct: 7 RVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRG-TGLFPSNFV 57
>pdb|2FRY|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Nck2
Adaptor Protein
Length = 61
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 117 YDFDGNDPDDLPFKKNDILIVVSKDEE--HWWTAQNISGEVGSIPVPYV 163
Y F ++L F+K + + V+ K E WW +N G+VG +P YV
Sbjct: 9 YPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 57
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein
Length = 68
Score = 35.4 bits (80), Expect = 0.039, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
+A Y F + +DL + DI+ ++ E WW + I +G P +VQ+ S
Sbjct: 11 VALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGK-IQDRIGFFPANFVQRLS 63
>pdb|1UE9|A Chain A, Solution Structure Of The Fourth Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 80
Score = 35.0 bits (79), Expect = 0.044, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGK-----TGHFPFTHVEFI-PTNE 266
L L G +I + K N +G W+GEL + G FP +HV+ + P++E
Sbjct: 24 LSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSSE 72
>pdb|2DL8|A Chain A, Solution Structure Of The Sh3 Domain Of Human Slit-Robo
Rho Gtpase-Activating Protein 2
Length = 72
Score = 35.0 bits (79), Expect = 0.045, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
+ IAK+D+ G +L FKK L++ + + WW ++ +G G IP Y+
Sbjct: 11 EAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRH-NGIDGLIPHQYI 61
>pdb|1OO3|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase
pdb|1OO4|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase Complexed
To A Peptide Derived From Pdgfr
Length = 111
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTIL-GNYVLCVKE--NNK 57
WY+G ++R+E L D G FLVRD++T + G+Y L +++ NNK
Sbjct: 13 WYWGDISREEVNEKLRDTAD-GTFLVRDASTKMHGDYTLTLRKGGNNK 59
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 35.0 bits (79), Expect = 0.047, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 215 VPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
+P D+ L+L++GDII + + G W G LN K G FP V+
Sbjct: 11 IPQNEDE--LELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 54
Score = 27.7 bits (60), Expect = 8.5, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 117 YDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+++ + D+L K DI+ + + EE WW+ ++ ++G P +V+
Sbjct: 8 FEYIPQNEDELELKVGDIIDINEEVEEGWWSG-TLNNKLGLFPSNFVK 54
>pdb|1FU5|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase Complexed To A Doubly Phosphorylated
Peptide Derived From Polyomavirus Middle T Antigen
pdb|1FU6|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase
Length = 111
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTIL-GNYVLCVKE--NNK 57
WY+G ++R+E L D G FLVRD++T + G+Y L +++ NNK
Sbjct: 13 WYWGDISREEVNEKLRDTAD-GTFLVRDASTKMHGDYTLTLRKGGNNK 59
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 35.0 bits (79), Expect = 0.048, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWWTAQNISGEVGSIPVPYVQKYSEG 169
V A YD++G D+L F + I+ +++K D++ +W + +G +G P V++ S G
Sbjct: 11 VKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGE-FNGRIGVFPSVLVEELSSG 69
Query: 170 MS 171
S
Sbjct: 70 PS 71
Score = 31.6 bits (70), Expect = 0.57, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 240 NGQWEGELNGKTGHFPFTHVEFIPTNETS 268
+G WEGE NG+ G FP VE + + +S
Sbjct: 44 DGFWEGEFNGRIGVFPSVLVEELSSGPSS 72
>pdb|1YN8|A Chain A, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|B Chain B, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|C Chain C, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|D Chain D, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|E Chain E, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|F Chain F, Sh3 Domain Of Yeast Nbp2
Length = 59
Score = 35.0 bits (79), Expect = 0.052, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISG-EVGSIP---VPYVQ 164
++ +A YDF+ + ++L + DI+ + K + W A+N SG + G +P V Y+Q
Sbjct: 2 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 59
>pdb|2RQT|A Chain A, Solution Structure Of The Human Ddef1 Sh3 Domain
pdb|2RQU|A Chain A, Solution Structure Of The Complex Between The Ddef1 Sh3
Domain And The Apc Samp1 Motif
Length = 61
Score = 35.0 bits (79), Expect = 0.053, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGE---VGSIPVPYVQKY 166
+ +V YD ++ D+L F + +++IV ++++ WW +I G+ G PV +V
Sbjct: 1 VRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIG-HIEGQPERKGVFPVSFVHIL 59
Query: 167 SE 168
S+
Sbjct: 60 SD 61
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 34.7 bits (78), Expect = 0.060, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWW--TAQNISGEVGSIPVPYVQ 164
A YD+ D D++ FK D +I V +E W T Q +G G +P YV+
Sbjct: 8 AMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQR-TGRTGMLPANYVE 58
>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda
Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1
Gtpase- Activating Protein
Length = 76
Score = 34.7 bits (78), Expect = 0.061, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGE---VGSIPVPYVQKY 166
+ +V YD ++ D+L F + +++IV ++++ WW +I G+ G PV +V
Sbjct: 10 VRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIG-HIEGQPERKGVFPVSFVHIL 68
Query: 167 SE 168
S+
Sbjct: 69 SD 70
>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From
Ste20p
Length = 73
Score = 34.7 bits (78), Expect = 0.062, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISG-EVGSIP---VPYVQ 164
++ +A YDF+ + ++L + DI+ + K + W A+N SG + G +P V Y+Q
Sbjct: 6 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 63
>pdb|2YUP|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Vinexin
Length = 90
Score = 34.7 bits (78), Expect = 0.062, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 105 PATKTIE--KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-NISGEVGSIPVP 161
P + +E + +A+Y F G+ +L F+K + + ++ K E+W+ + +G G P
Sbjct: 10 PTYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPAS 69
Query: 162 YVQKYSE 168
YVQ E
Sbjct: 70 YVQVSRE 76
>pdb|2KE9|A Chain A, Nmr Solution Structure Of The Caskin Sh3 Domain
Length = 83
Score = 34.7 bits (78), Expect = 0.064, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELN------GKTGHFPFTHVEFI 262
N +D TAL + GD+I V + + +G+W+G ++ + G+FP VE +
Sbjct: 29 NLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVV 80
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
E+ IA Y + +P DL F + + ++V KD E WWT +I G P YV+ G
Sbjct: 9 EEYIALYPYSSVEPGDLTFTEGEEILVTQKDGE-WWTG-SIGDRSGIFPSNYVKPKDSGP 66
Query: 171 S 171
S
Sbjct: 67 S 67
>pdb|1WXB|A Chain A, Solution Structure Of The Sh3 Domain From Human Epidermal
Growth Factor Receptor Pathway Substrate 8-Like Protein
Length = 68
Score = 34.7 bits (78), Expect = 0.066, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 117 YDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIP 159
YDF + ++L K+++L V+ +D WW ++ SG+ G +P
Sbjct: 14 YDFTARNANELSVLKDEVLEVL-EDGRQWWKLRSRSGQAGYVP 55
>pdb|1X6C|A Chain A, Solution Structures Of The Sh2 Domain Of Human Protein-
Tyrosine Phosphatase Shp-1
pdb|2YU7|A Chain A, Solution Structure Of The Shp-1 C-Terminal Sh2 Domain
Complexed With A Tyrosine-Phosphorylated Peptide From
Nkg2a
pdb|2RMX|A Chain A, Solution Structure Of The Shp-1 C-Terminal Sh2 Domain
Complexed With A Tyrosine-Phosphorylated Peptide From
Nkg2a
Length = 118
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKEN----NKVSHYIINKI 66
+ WY G M+ +A+ +L ++ + FLVR+S + G++VL V + S + I
Sbjct: 6 SGWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHI 65
Query: 67 TNTEQQTCYKIGD-KTFSDLPSLLAFYK 93
+ Y +G +TF L L+ +K
Sbjct: 66 KVMCEGGRYTVGGLETFDSLTDLVEHFK 93
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 34.7 bits (78), Expect = 0.067, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 113 VIAK--YDFDGNDPDDLPFKKNDILIVVSKDEE---HWWTAQNISGEVGSIP 159
V+AK YD PD+L F+K DI+ V+ +D + WW ++ G G +P
Sbjct: 4 VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLC-SLHGRQGIVP 54
>pdb|1JQQ|A Chain A, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|B Chain B, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|C Chain C, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|D Chain D, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1N5Z|A Chain A, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
pdb|1N5Z|B Chain B, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
Length = 92
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 110 IEKVIAKYDFDGNDPD-DLPFKKNDILIVVSKDE-----EHWWTAQNISGEVGSIPVPYV 163
+E A YDF +P+ ++ KK D++ ++SK + WW + +G +G IP Y+
Sbjct: 14 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYI 73
Query: 164 Q 164
+
Sbjct: 74 E 74
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYV 163
+A YD++ DL F K + ++ WW A+++ +GE G IP YV
Sbjct: 10 VALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYV 60
>pdb|1KIK|A Chain A, Sh3 Domain Of Lymphocyte Specific Kinase (Lck)
Length = 57
Score = 34.3 bits (77), Expect = 0.080, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQK 165
VIA + ++ + DL F+K + L ++ + E WW AQ+++ G+ G IP +V K
Sbjct: 3 VIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAK 55
>pdb|2IIM|A Chain A, Sh3 Domain Of Human Lck
Length = 62
Score = 34.3 bits (77), Expect = 0.091, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQK 165
VIA + ++ + DL F+K + L ++ + E WW AQ+++ G+ G IP +V K
Sbjct: 9 VIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAK 61
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 33.9 bits (76), Expect = 0.095, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFP 255
L + +G+II + G WEG++NG+ G FP
Sbjct: 18 LTISVGEIITNIRKEDGGWWEGQINGRRGLFP 49
Score = 31.2 bits (69), Expect = 0.66, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
+ I ++D+ D+L +I+ + K++ WW Q I+G G P +V++
Sbjct: 3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQ-INGRRGLFPDNFVRE 55
>pdb|3RBB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
pdb|3RBB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
Length = 61
Score = 33.9 bits (76), Expect = 0.10, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISG-EVGSIPVPYVQK 165
V+A YD+ DL F+K D ++V+ + E WW A++++ + G IP YV +
Sbjct: 6 VVALYDYYSPFSWDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVAR 58
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 33.9 bits (76), Expect = 0.10, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
A +DF GN +L FK D++ ++S+ + W + G G P+ +V+
Sbjct: 9 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEG-TVRGATGIFPLSFVK 57
Score = 30.8 bits (68), Expect = 0.83, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 210 VKQVRVPNAYD-----KTALKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVEFI 262
+K +R +D K L + GD+I + + IN W EG + G TG FP + V+ +
Sbjct: 2 IKHMRAEALFDFTGNSKLELNFKAGDVIFLL-SRINKDWLEGTVRGATGIFPLSFVKIL 59
>pdb|2VIF|A Chain A, Crystal Structure Of Socs6 Sh2 Domain In Complex With A
C-Kit Phosphopeptide
Length = 141
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 10 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
+ WY+G +TR EA+ L + D G+FLVRDS+ L + + K H I
Sbjct: 23 KQGWYWGPITRWEAEGKLANVPD-GSFLVRDSSDDRYLLSLSFRSHGKTLHTRI 75
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 33.9 bits (76), Expect = 0.11, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
V A +DFD + +L F++ D + V+ + +WW G+ G P YV
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGA-CHGQTGMFPRNYV 54
Score = 27.7 bits (60), Expect = 8.1, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 229 GDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
GD I V + W+G +G+TG FP +V
Sbjct: 24 GDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 33.9 bits (76), Expect = 0.11, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
V A +DFD + +L F++ D + V+ + +WW G+ G P YV
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGA-CHGQTGMFPRNYV 54
Score = 27.7 bits (60), Expect = 8.1, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 229 GDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
GD I V + W+G +G+TG FP +V
Sbjct: 24 GDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 33.9 bits (76), Expect = 0.11, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
V A +DFD + +L F++ D + V+ + +WW G+ G P YV
Sbjct: 3 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGA-CHGQTGMFPRNYV 52
Score = 27.7 bits (60), Expect = 8.1, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 229 GDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
GD I V + W+G +G+TG FP +V
Sbjct: 22 GDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 52
>pdb|1H92|A Chain A, Sh3 Domain Of Human Lck Tyrosine Kinase
Length = 63
Score = 33.9 bits (76), Expect = 0.11, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQK 165
VIA + ++ + DL F+K + L ++ + E WW AQ+++ G+ G IP +V K
Sbjct: 9 VIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAK 61
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 33.9 bits (76), Expect = 0.11, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 118 DFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
++ G +P DL F K D++++ + +E+W+ + I+G G P V+ S
Sbjct: 15 NYRGKNPGDLKFNKGDVILLRRQLDENWYQGE-INGVSGIFPASSVEVIS 63
Score = 32.0 bits (71), Expect = 0.42, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
LK GD+I + + ++GE+NG +G FP + VE I
Sbjct: 24 LKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVI 62
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
A +DF GN +L FK D++ ++S+ + W + G G P+ +V+
Sbjct: 179 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEG-TVRGATGIFPLSFVK 227
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 221 KTALKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVEFI 262
K L + GD+I + + IN W EG + G TG FP + V+ +
Sbjct: 188 KLELNFKAGDVIFLL-SRINKDWLEGTVRGATGIFPLSFVKIL 229
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related Kinase
Length = 77
Score = 33.9 bits (76), Expect = 0.12, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGE--------VGSIPVPYVQK 165
+A +D+ +DL F+ D L V+ E WW A+++ + G IP YV +
Sbjct: 11 VALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAE 70
Query: 166 YS 167
S
Sbjct: 71 DS 72
>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein
Tyrosine Phosphatase Shp-1
Length = 595
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV 52
WY G M+ +A+ +L ++ + FLVR+S + G++VL V
Sbjct: 110 WYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSV 149
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
W+ ++ +A+ +L +G+FL R S G++ L V+ ++V+H I +
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGD---- 59
Query: 73 TCYKI-GDKTFSDLPSLLAFY 92
Y + G + F+ L L+ +Y
Sbjct: 60 -FYDLYGGEKFATLTELVEYY 79
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 33.9 bits (76), Expect = 0.12, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
V A +DFD + +L F++ D + V+ + +WW G+ G P YV
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGA-CHGQTGMFPRNYV 54
Score = 27.7 bits (60), Expect = 7.3, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 229 GDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN 265
GD I V + W+G +G+TG FP +V + N
Sbjct: 24 GDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRN 60
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 33.9 bits (76), Expect = 0.12, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
A +DF GN +L FK D++ ++S+ + W + G G P+ +V+
Sbjct: 23 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEG-TVRGATGIFPLSFVK 71
Score = 29.3 bits (64), Expect = 2.6, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 221 KTALKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVEFI 262
K L + GD+I + + IN W EG + G TG FP + V+ +
Sbjct: 32 KLELNFKAGDVIFLL-SRINKDWLEGTVRGATGIFPLSFVKIL 73
>pdb|2DX0|A Chain A, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
pdb|2DX0|B Chain B, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
Length = 138
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 8 HDRNSWYFGMMTRQEAQAILLSE------KDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
H W+ + + + LL E +G FLVR+S T +Y L + +V H
Sbjct: 19 HFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHC 78
Query: 62 IINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS 100
I Y + TF+ + +L+ Y+ +L +
Sbjct: 79 RIRSTMENGVMKYYLTDNLTFNSIYALIQHYREAHLRCA 117
>pdb|1YP5|A Chain A, Yeast Myo5 Sh3 Domain, Tetragonal Crystal Form
pdb|1ZUY|A Chain A, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
pdb|1ZUY|B Chain B, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
Length = 58
Score = 33.5 bits (75), Expect = 0.14, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 115 AKYDFDGN-DPDDLPFKKNDILIVVSKDEEHWWTAQNISG-EVGSIPVPYVQKY 166
A YDF G+ P +LP KK D++ + ++ W + + G + G +P Y++ +
Sbjct: 5 AAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKPH 58
>pdb|2JMC|A Chain A, Chimer Between Spc-Sh3 And P41
Length = 77
Score = 33.5 bits (75), Expect = 0.14, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 124 PDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169
P ++ KK DIL +++ + WW + ++ G +P YV+K G
Sbjct: 5 PREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDSG 49
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 33.5 bits (75), Expect = 0.14, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 218 AYDKTALKLEIGDIIK-VTKTNIN-GQWEGELNGKTGHFPFTHVEFI 262
A + L ++ GDI+ + K I+ G WEGELNG+ G FP V+ +
Sbjct: 18 AQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLL 64
Score = 29.3 bits (64), Expect = 2.3, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKYS 167
KVI + ++ + D+L K+ DI+ +++KD + WW + ++G G P +V+ S
Sbjct: 11 KVI--FPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE-LNGRRGVFPDNFVKLLS 65
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 33.5 bits (75), Expect = 0.15, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 220 DKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
++ L+L +GD+I V + G W G LN K G FP V+
Sbjct: 17 NEDELELIVGDVIDVIEEVEEGWWSGTLNNKLGLFPSNFVK 57
Score = 30.4 bits (67), Expect = 1.2, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 117 YDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
+D+ + D+L D++ V+ + EE WW+ ++ ++G P +V++
Sbjct: 11 FDYSPQNEDELELIVGDVIDVIEEVEEGWWSG-TLNNKLGLFPSNFVKE 58
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 33.1 bits (74), Expect = 0.16, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 116 KYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
K+DF P +L +K DI+ + + +++W ++ G +G P YV+ S
Sbjct: 13 KFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEH-HGRLGIFPANYVEVLS 63
Score = 29.6 bits (65), Expect = 1.8, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 224 LKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVEFI 262
L L+ GDI+ + K ++ W EGE +G+ G FP +VE +
Sbjct: 24 LTLQKGDIVYIHK-EVDKNWLEGEHHGRLGIFPANYVEVL 62
>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1
Length = 532
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV 52
WY G M+ +A+ +L ++ + FLVR+S + G++VL V
Sbjct: 110 WYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSV 149
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
W+ ++ +A+ +L +G+FL R S G++ L V+ ++V+H +I N+
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHI---RIQNSGD- 59
Query: 73 TCYKI-GDKTFSDLPSLLAFY 92
Y + G + F+ L L+ +Y
Sbjct: 60 -FYDLYGGEKFATLTELVEYY 79
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 205 PAFARVKQVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
P F ++ R Y+KT+ + L GD+++V + + +G W ++ K G P + +E
Sbjct: 6 PEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE 64
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 27/161 (16%)
Query: 100 SPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIP 159
PL P ++ A D++ ++ D++ VV K E WW Q + + G IP
Sbjct: 1 GPLGSPEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQ-MKAKRGWIP 59
Query: 160 VPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAY 219
+++ LDS + P V + A+ V+
Sbjct: 60 ASFLEP--------------LDSPDE---TEDPEPNYAGEPYVAIKAYTAVEG------- 95
Query: 220 DKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
D+ +L LE G+ ++V ++G W + TG+FP +++
Sbjct: 96 DEVSL-LE-GEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 134
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein States
By Relaxation Dispersion Nmr
Length = 62
Score = 33.1 bits (74), Expect = 0.17, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-NISGEVGSIPVPYV 163
A+YD+D + ++L F +ND +I + ++ WW + G G P YV
Sbjct: 9 AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 58
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 32.7 bits (73), Expect = 0.21, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 116 KYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
K+DF P +L +K DI+ + + +++W ++ G +G P YV+
Sbjct: 7 KFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEH-HGRLGIFPANYVE 54
Score = 32.7 bits (73), Expect = 0.25, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 224 LKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVEFIP 263
L L+ GDI+ + K ++ W EGE +G+ G FP +VE +P
Sbjct: 18 LTLQKGDIVYIHK-EVDKNWLEGEHHGRLGIFPANYVEVLP 57
>pdb|1VA7|A Chain A, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|B Chain B, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|C Chain C, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|D Chain D, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
Length = 70
Score = 32.7 bits (73), Expect = 0.22, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 112 KVIAKYDFDGN-DPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQKYSE 168
K A YDF G+ +LP KK DI + +S+DE W+ + + G +P Y+ Y +
Sbjct: 5 KFEAAYDFPGSGSSSELPLKKGDI-VFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKD 63
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 32.7 bits (73), Expect = 0.22, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-NISGEVGSIPVPYV 163
A+YD+D + ++L F +ND +I + ++ WW + G G P YV
Sbjct: 6 AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 55
>pdb|2BTT|A Chain A, Nmr Structure Of Myo3-Sh3 Domain From Myosin-Type I From
S. Cerevisiae
Length = 69
Score = 32.7 bits (73), Expect = 0.23, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 112 KVIAKYDFDGN-DPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQKYSE 168
K A YDF G+ +LP KK DI + +S+DE W+ + + G +P Y+ Y +
Sbjct: 4 KFEAAYDFPGSGSSSELPLKKGDI-VFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKD 62
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 205 PAFARVKQVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
P F ++ R Y+KT+ + L GD+++V + + +G W ++ K G P + +E
Sbjct: 6 PEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE 64
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 101 PLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPV 160
PL P ++ A D++ ++ D++ VV K E WW Q + + G IP
Sbjct: 2 PLGSPEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQ-MKAKRGWIPA 60
Query: 161 PYVQ 164
+++
Sbjct: 61 SFLE 64
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 32.7 bits (73), Expect = 0.25, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHW-WTAQNISGEVGSIPVPYVQ 164
A YD+ D D++ F+ D ++ V + ++ W + +G+ G +P YV+
Sbjct: 8 AVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVE 58
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 32.7 bits (73), Expect = 0.25, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
IA YD+ D++ F +DI+ + ++ WW G G P YV+
Sbjct: 13 IALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGV-CKGRYGLFPANYVE 62
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 32.7 bits (73), Expect = 0.26, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-NISGEVGSIPVPYV 163
A+YD+D + ++L F +ND +I + ++ WW + G G P YV
Sbjct: 5 AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54
>pdb|1RUW|A Chain A, Crystal Structure Of The Sh3 Domain From S. Cerevisiae
Myo3
Length = 69
Score = 32.7 bits (73), Expect = 0.26, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 112 KVIAKYDFDGN-DPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQKYSE 168
K A YDF G+ +LP KK DI + +S+DE W+ + + G +P Y+ Y +
Sbjct: 4 KFEAAYDFPGSGSSSELPLKKGDI-VFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKD 62
>pdb|1TUC|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At S19-P20
Length = 63
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 124 PDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169
P ++ KK DIL +++ + WW + ++ G +P YV+K G
Sbjct: 3 PREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDSG 47
>pdb|1G2B|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At N47-D48
pdb|1TUD|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At N47-D48
Length = 62
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ 149
E V+A YD+ P ++ KK DIL +++ + WW +
Sbjct: 22 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE 60
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 32.3 bits (72), Expect = 0.29, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMS 171
+A YD+ D++ F +DI+ + ++ WW G G P YV+ G S
Sbjct: 21 VALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGV-CKGRYGLFPANYVELRQSGPS 77
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 32.3 bits (72), Expect = 0.29, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTA--QNISGEVGSIPVPY 162
K + +DF ++L F+ D+ V K+E+ WW G V VP+
Sbjct: 12 KYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPH 64
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain Of
Cd2ap
Length = 57
Score = 32.3 bits (72), Expect = 0.33, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 217 NAYDKTALKLEIGDIIK-VTKTNINGQWEGELNGKTGHFPFTHVEFI 262
+A L + +G+II+ V K G EGELNG+ G FP V+ I
Sbjct: 10 DAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEI 56
Score = 31.6 bits (70), Expect = 0.54, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
I +YD+D D+L + +I+ V K +E W ++G G P +V++
Sbjct: 4 IVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKE 55
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEE---HWWTAQNISGEVGSIP 159
+ A +D++ + D+LP K+ D + ++ +++E WW A+ ++ + G +P
Sbjct: 173 IYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWAR-LNDKEGYVP 221
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEE---HWWTAQNISGEVGSIP 159
+ A +D++ + D+LP K+ D + ++ +++E WW A+ ++ + G +P
Sbjct: 173 IYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWAR-LNDKEGYVP 221
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
Length = 62
Score = 32.0 bits (71), Expect = 0.37, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 217 NAYDKTALKLEIGDIIK-VTKTNINGQWEGELNGKTGHFPFTHVEFI 262
+A L + +G+II+ V K G EGELNG+ G FP V+ I
Sbjct: 11 DAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEI 57
Score = 31.2 bits (69), Expect = 0.61, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
I +YD+D D+L + +I+ V K +E W ++G G P +V++
Sbjct: 5 IVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKE 56
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex
With A Peptide Of Xirp2
Length = 64
Score = 32.0 bits (71), Expect = 0.40, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWW--TAQNISGEVGSIPVPYVQ 164
A YD+ D D++ F+ D ++ V ++ W T Q +G G +P Y++
Sbjct: 11 AMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQR-TGRTGMLPANYIE 61
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 32.0 bits (71), Expect = 0.44, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+A YD+ D++ F +DI+ + ++ WW G G P YV+
Sbjct: 14 VALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGV-CKGRYGLFPANYVE 63
>pdb|2C9W|A Chain A, Crystal Structure Of Socs-2 In Complex With Elongin-B
And Elongin-C At 1.9a Resolution
Length = 169
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 10 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSN 42
+ WY+G MT EA+ L E G FL+RDS+
Sbjct: 16 QTGWYWGSMTVNEAKEK-LKEAPEGTFLIRDSS 47
>pdb|2KEA|A Chain A, Nmr Solution Structure Of The Hacs1 Sh3 Domain
Length = 63
Score = 31.6 bits (70), Expect = 0.59, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
ARV P+ YD +LK++ GDII + G W G LN K G+F F +V+ I
Sbjct: 7 ARVHTDFTPSPYDTDSLKIKKGDIIDIICKTPMGMWTGMLNNKVGNFKFIYVDVI 61
>pdb|1WDX|A Chain A, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|B Chain B, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|C Chain C, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|D Chain D, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
Length = 69
Score = 31.2 bits (69), Expect = 0.65, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTA--QNISGEV--GSIPVPYV 163
KV+A++ + + DDL F+K+ +IV S ++ W+ Q+ +G+V G P +V
Sbjct: 10 KVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFV 65
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 230 DIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET 267
DII V + N W GE++G G FP ++V+ IP +E+
Sbjct: 33 DIITVLEQQEN-WWFGEVHGGRGWFPKSYVKIIPGSES 69
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 92 YKVHYLDTSPLIKPATKTIE-----KVIAKYDFDGNDPDDLPFKKNDILIVVSKD---EE 143
Y+ Y D + + +++ V A +D+ D+L F++ + + V+ +D E
Sbjct: 131 YREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEET 190
Query: 144 HWWTAQNISGEVGSIPVPY 162
WW A + G+ G +P Y
Sbjct: 191 DWWWAA-LHGQEGYVPRNY 208
>pdb|1TG0|A Chain A, 0.97-A Structure Of The Sh3 Domain Of Bbc1
pdb|1ZUK|A Chain A, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From Las17
pdb|1ZUK|B Chain B, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From Las17
Length = 68
Score = 31.2 bits (69), Expect = 0.70, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTA--QNISGEV--GSIPVPYV 163
KV+A++ + + DDL F+K+ +IV S ++ W+ Q+ +G+V G P +V
Sbjct: 9 KVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFV 64
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 30.8 bits (68), Expect = 0.80, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 204 LPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
+PAF + V A + L L G + V + +G W G NG+ G FP +V
Sbjct: 1 IPAFVKFAYV----AEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
Length = 70
Score = 30.8 bits (68), Expect = 0.81, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
A Y + + L F KND++ V+ + ++ WW + + G+ G P YV+ S
Sbjct: 17 ALYPWRAKKDNHLNFNKNDVITVLEQ-QDMWWFGE-VQGQKGWFPKSYVKLIS 67
>pdb|2KXD|A Chain A, The Structure Of Sh3-F2
Length = 73
Score = 30.8 bits (68), Expect = 0.83, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 126 DLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169
++ KK DIL +++ + WW + ++ G +P YV+K G
Sbjct: 15 EVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDSG 57
>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3
Domain-Containing Protein 1
Length = 70
Score = 30.8 bits (68), Expect = 0.88, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISG--EVGSIPVPYV 163
+ IAK++F+G+ ++ F+K + + ++ + +E+W+ + I G G P+ YV
Sbjct: 9 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGR-IPGTSRQGIFPITYV 61
>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure
Solution Of The Second Sh3 Domain From Ponsin
pdb|2O31|A Chain A, Crystal Structure Of The Second Sh3 Domain From Ponsin
pdb|2O9S|A Chain A, The Second Sh3 Domain From Ponsin
pdb|2O9V|A Chain A, The Second Sh3 Domain From Ponsin In Complex With The
Paxillin Proline Rich Region
Length = 67
Score = 30.8 bits (68), Expect = 0.88, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISG--EVGSIPVPYV 163
+ IAK++F+G+ ++ F+K + + ++ + +E+W+ + I G G P+ YV
Sbjct: 8 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGR-IPGTSRQGIFPITYV 60
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In Rho-Gtpase-Activating
Protein 4
Length = 76
Score = 30.8 bits (68), Expect = 0.91, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
+A + + G +L F++ D+L + + WW ++ +G G IP Y+
Sbjct: 14 VACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEH-NGMRGLIPHKYI 62
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 30.8 bits (68), Expect = 0.97, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNG 275
L + GD+IKV + W G+++ + G FP + V E VE G+G
Sbjct: 27 LAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQEDEVE-EGSG 77
Score = 28.5 bits (62), Expect = 4.7, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 126 DLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+L FK D++ V+ + WW Q I E G P +V+
Sbjct: 26 ELAFKAGDVIKVLDASNKDWWWGQ-IDDEEGWFPASFVR 63
>pdb|2ENM|A Chain A, Solution Structure Of The Sh3 Domain From Mouse Sorting
Nexin-9
Length = 77
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 224 LKLEIGDIIKVTKTNINGQW-EGELN-GKTGHFPFTHVEFIP 263
L + G+II VT N+ G W EG+ N G+ G P +VE +P
Sbjct: 27 LTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILP 68
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 220 DKTALKLEIGDIIKV--TKTNINGQWEGELNGKTGHFP 255
++ L G+II + +T G W+GELNGK G FP
Sbjct: 19 NEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFP 56
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 117 YDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIP 159
+ + G + D+L F++ +I+ ++SK+ E WW + ++G+ G P
Sbjct: 13 FPYTGTNEDELTFREGEIIHLISKETGEAGWWKGE-LNGKEGVFP 56
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 219 YDKTA---LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
Y+KT+ + L GD+++V + + +G W ++ K G P + +E
Sbjct: 20 YEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE 64
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 99 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI 158
T P+I + I D++ ++ D++ VV K E WW Q + + G I
Sbjct: 6 TGPIILQTYRAIA------DYEKTSGSEMALSTGDVVEVVEKSESGWWFCQ-MKAKRGWI 58
Query: 159 PVPYVQ 164
P +++
Sbjct: 59 PASFLE 64
>pdb|2EO6|A Chain A, Solution Structure Of The Sh2 Domain From Mouse B-Cell
Linker Protein Blnk
Length = 141
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGN--YVLCVKENNKVSHYIINKITNTE 70
WY G R+ A+ L +G+FL+R S+ Y L N +V + + I T+
Sbjct: 25 WYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYNIPVRFIEATK 84
Query: 71 QQTCYKIGDK 80
Q Y +G K
Sbjct: 85 Q---YALGKK 91
>pdb|2EGA|A Chain A, Solution Structure Of The First Sh3 Domain From Human
Kiaa0418 Protein
Length = 70
Score = 30.4 bits (67), Expect = 1.2, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169
+E+ + ++ + +L + +++ V+ K+E WW + S E G +P Y++ + G
Sbjct: 8 LEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFV-STSEEQGWVPATYLEAQNSG 66
Query: 170 MS 171
S
Sbjct: 67 PS 68
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 120 DGNDPDDLPFKKNDILIVV-SKDEEHWWTAQN 150
D +PD L + ND++ V+ + E +WW QN
Sbjct: 286 DFEEPDKLHIQMNDVITVIEGRAENYWWRGQN 317
>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
pdb|4E6R|B Chain B, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
Length = 58
Score = 30.0 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 204 LPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
+PAF V A + L L G + V + +G W G NG+ G FP +V
Sbjct: 2 IPAFVXFAYV----AEREDELSLVXGSRVTVXEXCSDGWWRGSYNGQIGWFPSNYV 53
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 214 RVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
R Y+KT+ + L GD+++V + + +G W ++ K G P + +E
Sbjct: 14 RAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE 63
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 33/162 (20%)
Query: 99 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI 158
T P+I + I D++ ++ D++ VV K E WW Q + + G I
Sbjct: 5 TGPIILQTYRAIA------DYEKTSGSEMALSTGDVVEVVEKSESGWWFCQ-MKAKRGWI 57
Query: 159 PVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNA 218
P +++ LDS P + P E P A ++ A
Sbjct: 58 PASFLEP--------------LDS-----PDETEDPEPNYAGE---PYVA----IKAYTA 91
Query: 219 YDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
+ + L G+ ++V ++G W + TG+FP +++
Sbjct: 92 VEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 133
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 1 MTGTFDPHDRNSWY----FGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENN 56
+T T + +R +Y GM++R+ A +L+ + G++L+R+S G Y L ++ +
Sbjct: 37 ITCTCEVENRPKYYGREFHGMISREAADQLLIVAE--GSYLIRESQRQPGTYTLALRFGS 94
Query: 57 KVSHY 61
+ ++
Sbjct: 95 QTRNF 99
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 113 VIAKYDFD-----GNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-----SGEVGSIP 159
+ A +D+D G L F+ D+L V+ +E WW A+ + + ++G IP
Sbjct: 10 IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIP 66
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 29.6 bits (65), Expect = 2.2, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 116 KYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
K+++ D+L K +IV+ K + WW + +G+VG P YV +
Sbjct: 10 KFNYMAEREDELSLIKGTKVIVMEKCSDGWWRG-SYNGQVGWFPSNYVTE 58
Score = 27.3 bits (59), Expect = 9.1, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 202 VKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
+ +PA+ + + A + L L G + V + +G W G NG+ G FP +V
Sbjct: 3 LNMPAYVKFNYM----AEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 56
>pdb|2IZV|A Chain A, Crystal Structure Of Socs-4 In Complex With Elongin-B
And Elongin-C At 2.55a Resolution
Length = 187
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDS 41
N Y+G+M + A+A LL K G FL+RDS
Sbjct: 34 NPCYWGVMDKYAAEA-LLEGKPEGTFLLRDS 63
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 113 VIAKYDFD-----GNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-----SGEVGSIP 159
+ A +D+D G L F+ D+L V+ +E WW A+ + + ++G IP
Sbjct: 4 IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIP 60
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
A +D D +L FK D++ V+ WW + GE G P +V+
Sbjct: 35 ALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGE-GWFPASFVR 83
>pdb|1UGV|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Olygophrein-1 Like Protein (Kiaa0621)
Length = 72
Score = 29.3 bits (64), Expect = 2.4, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 207 FARVKQVRVPNAYDKTALKLEIGDII-KVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
F + K + A + L G + V + G EG LNGKTG P +VEF+
Sbjct: 10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFL 66
>pdb|3U3P|A Chain A, The S-Sad Phased Crystal Structure Of The Ecto-Domain Of
Death Receptor 6 (Dr6)
pdb|3U3Q|A Chain A, The S-Sad Phased Crystal Structure Of The Ecto-Domain Of
Death Receptor 6 (Dr6)
pdb|3U3S|A Chain A, The S-Sad Phased Crystal Structure Of The Ecto-Domain Of
Death Receptor 6 (Dr6)
pdb|3U3T|A Chain A, The S-Sad Phased Crystal Structure Of The Ecto-Domain Of
Death Receptor 6 (Dr6)
pdb|3U3V|A Chain A, The S-Sad Phased Crystal Structure Of The Ecto-Domain Of
Death Receptor 6 (Dr6)
Length = 313
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 41 SNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS 100
SN + +C V + K T TE C + TFSD+PS + K Y D
Sbjct: 99 SNATCAPHTVC-----PVGWGVRKKGTETEDVRCKQCARGTFSDVPSSVMKCKA-YTDCL 152
Query: 101 P----LIKPATKTIEKVIA 115
+IKP TK + V
Sbjct: 153 SQNLVVIKPGTKETDNVCG 171
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 29.3 bits (64), Expect = 2.7, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 116 KYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSIL 173
K+++ D+L K +IV+ K + WW + +G+VG P YV + EG S L
Sbjct: 23 KFNYMAEREDELSLIKGTKVIVMEKCSDGWWRG-SYNGQVGWFPSNYVTE--EGDSPL 77
Score = 27.7 bits (60), Expect = 7.6, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 201 EVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
++ +PA+ + + A + L L G + V + +G W G NG+ G FP +V
Sbjct: 15 DLNMPAYVKFNYM----AEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 69
>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
pdb|1YWP|A Chain A, Phospholipase Cgamma1 Sh3
Length = 64
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 100 SPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIP 159
SP K A K + +D+ D+L F K+ I+ V K + WW + P
Sbjct: 2 SPTFKSAVKAL------FDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFP 55
Query: 160 VPYVQK 165
YV++
Sbjct: 56 SNYVEE 61
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 127 LPFKKNDILIVVSKDEEHWWTAQNI-----SGEVGSIP 159
L F+ D+L V+ +E WW A+ + + ++G IP
Sbjct: 449 LSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIP 486
>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
pdb|2HSP|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
Length = 71
Score = 29.3 bits (64), Expect = 2.9, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 100 SPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWW 146
SP K A K + +D+ D+L F K+ I+ V K E WW
Sbjct: 2 SPTFKCAVKAL------FDYKAQREDELTFIKSAIIQNVEKQEGGWW 42
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 28.9 bits (63), Expect = 3.1, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
EK + + D++ F+K + V+ K+ E WW + + G+ G P Y++K
Sbjct: 9 EKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYL-GKEGWAPASYLKK 62
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 28.9 bits (63), Expect = 3.8, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQK 165
A Y F+ + D++ F DI+ V K E W + G G P YV+K
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEK 61
Score = 28.5 bits (62), Expect = 4.8, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 218 AYDKTALKLEIGDIIKVTKTNIN--GQWEGELNGKTGHFPFTHVEFIPTNE 266
A + + GDII+V + + G G G G FP +VE +P++E
Sbjct: 16 ARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSE 66
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3 Domain
Length = 58
Score = 28.5 bits (62), Expect = 4.1, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+E V A Y FD DL K D + ++ K W+ + +G G P YV+
Sbjct: 2 MEYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKG-SCNGRTGIFPANYVK 55
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
A +D D +L FK D++ V WW + GE G P +V+
Sbjct: 72 ALWDHVTXDDQELGFKAGDVIEVXDATNREWWWGRVADGE-GWFPASFVR 120
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 28.5 bits (62), Expect = 4.5, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
A Y ++ D++ DI+ V+ D+ WT G G P Y +
Sbjct: 5 AIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54
>pdb|3QO4|A Chain A, The Crystal Structure Of Death Receptor 6
Length = 181
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 41 SNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS 100
SN + +C V + K T TE C + TFSD+PS + K Y D
Sbjct: 103 SNATCAPHTVC-----PVGWGVRKKGTETEDVRCKQCARGTFSDVPSSVMKCKA-YTDCL 156
Query: 101 P----LIKPATKTIEKVIA 115
+IKP TK + V
Sbjct: 157 SQNLVVIKPGTKETDNVCG 175
>pdb|2LX7|A Chain A, Solution Nmr Structure Of Sh3 Domain Of Growth
Arrest-Specific Protein 7 (Gas7) (Fragment 1-60) From
Homo Sapiens, Northeast Structural Genomics Consortium
(Nesg) Target Hr8574a
Length = 60
Score = 28.1 bits (61), Expect = 5.9, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 223 ALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFI 262
L+ G++I + + G WEGE +G G FP ++V+ +
Sbjct: 20 GLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQLL 60
>pdb|1KOL|A Chain A, Crystal Structure Of Formaldehyde Dehydrogenase
pdb|1KOL|B Chain B, Crystal Structure Of Formaldehyde Dehydrogenase
Length = 398
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 210 VKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKT 251
V+++ P D K+E G I+KV TNI G + + G+T
Sbjct: 16 VQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRT 57
>pdb|1ZUU|A Chain A, Crystal Structure Of The Yeast Bzz1 First Sh3 Domain At
0.97-A Resolution
Length = 58
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 117 YDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN--ISGEVGSIPVPYVQ 164
Y + D D++ D + +V++D WT N +GE G +P Y++
Sbjct: 8 YAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57
>pdb|3F2B|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mg And Zn
pdb|3F2C|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp And Mn
pdb|3F2D|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mn And Zn
Length = 1041
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 118 DFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVP 161
D G DP +P D++ + S E T + I VG+I +P
Sbjct: 699 DLSGIDPKTIPTDDPDVMGIFSSTEPLGVTPEQIMCNVGTIGIP 742
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 123 DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
D +L FK D++ V+ WW + GE G P +V+
Sbjct: 49 DDQELGFKAGDVIEVMDATNREWWWGRVADGE-GWFPASFVR 89
>pdb|1WXU|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Peroxisomal
Biogenesis Factor 13
Length = 93
Score = 27.7 bits (60), Expect = 8.6, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEE---HWWTAQNISGE-VGSIPVPYVQ 164
A+YDF +++ F+ D+L + K+++ W ++ G+ G IP YV+
Sbjct: 22 AEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVK 75
>pdb|1BB9|A Chain A, Crystal Structure Of The Sh3 Domain From Rat Amphiphysin 2
Length = 115
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVV 138
KV A++D+ D D+L K D+++V+
Sbjct: 46 KVQAQHDYTATDTDELQLKAGDVVLVI 72
>pdb|3E80|A Chain A, Structure Of Heparinase Ii Complexed With Heparan Sulfate
Degradation Disaccharide Product
pdb|3E80|B Chain B, Structure Of Heparinase Ii Complexed With Heparan Sulfate
Degradation Disaccharide Product
pdb|3E80|C Chain C, Structure Of Heparinase Ii Complexed With Heparan Sulfate
Degradation Disaccharide Product
Length = 749
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 85 LPSLLA--FYKVHYLD----TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKK 131
+P+LLA +YK YL+ P ++P K E + PDDLP +
Sbjct: 297 MPALLAGSYYKDEYLNYEFLKDPNVEPHCKLFEFLWRDTQLGSRKPDDLPLSR 349
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,409,013
Number of Sequences: 62578
Number of extensions: 404128
Number of successful extensions: 1307
Number of sequences better than 100.0: 420
Number of HSP's better than 100.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 710
Number of HSP's gapped (non-prelim): 569
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)