Query psy5076
Match_columns 288
No_of_seqs 243 out of 2787
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 16:37:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4792|consensus 100.0 2E-46 4.4E-51 302.9 18.0 268 1-269 1-291 (293)
2 KOG1264|consensus 100.0 2.9E-29 6.3E-34 234.2 11.4 257 6-267 529-835 (1267)
3 KOG1264|consensus 100.0 2.3E-28 5E-33 228.3 9.4 158 6-169 643-833 (1267)
4 KOG2996|consensus 99.9 8.5E-27 1.9E-31 211.3 9.4 151 10-167 684-863 (865)
5 KOG4226|consensus 99.9 5.9E-22 1.3E-26 165.2 11.4 155 111-268 5-168 (379)
6 KOG4226|consensus 99.9 2E-21 4.4E-26 162.0 9.4 142 112-268 109-255 (379)
7 smart00252 SH2 Src homology 2 99.9 5.5E-21 1.2E-25 137.9 10.1 82 11-97 1-83 (84)
8 cd00173 SH2 Src homology 2 dom 99.9 5.7E-21 1.2E-25 140.7 10.3 89 12-106 1-94 (94)
9 KOG4348|consensus 99.9 1.3E-21 2.8E-26 172.5 7.9 152 110-264 100-320 (627)
10 PF00017 SH2: SH2 domain; Int 99.8 1.7E-20 3.6E-25 133.1 9.3 76 13-92 1-77 (77)
11 KOG3601|consensus 99.8 8.4E-21 1.8E-25 153.3 4.7 157 4-166 51-218 (222)
12 KOG1029|consensus 99.8 6.3E-20 1.4E-24 171.3 4.6 131 105-262 974-1108(1118)
13 KOG4225|consensus 99.8 2E-18 4.4E-23 152.8 10.8 147 112-261 232-488 (489)
14 KOG4348|consensus 99.7 3.5E-19 7.6E-24 157.2 2.8 150 112-267 3-160 (627)
15 KOG4278|consensus 99.7 2.1E-17 4.5E-22 153.1 8.8 104 2-109 143-247 (1157)
16 KOG1029|consensus 99.7 1.9E-17 4.1E-22 154.9 7.4 151 111-285 906-1085(1118)
17 KOG4637|consensus 99.7 8.2E-17 1.8E-21 139.7 5.6 97 6-108 18-121 (464)
18 KOG0790|consensus 99.7 1.5E-16 3.3E-21 141.4 7.1 95 9-108 108-217 (600)
19 KOG0197|consensus 99.5 1E-14 2.3E-19 133.3 8.2 101 4-108 74-185 (468)
20 PF14604 SH3_9: Variant SH3 do 99.5 5.2E-14 1.1E-18 90.3 5.6 49 210-260 1-49 (49)
21 PF07653 SH3_2: Variant SH3 do 99.4 6.6E-13 1.4E-17 87.5 5.9 54 207-262 1-55 (55)
22 PF14604 SH3_9: Variant SH3 do 99.4 1.1E-12 2.4E-17 84.1 5.6 49 115-164 1-49 (49)
23 KOG4637|consensus 99.4 7.7E-13 1.7E-17 115.2 5.3 96 5-107 326-429 (464)
24 KOG1930|consensus 99.4 8E-13 1.7E-17 116.9 5.4 98 4-107 205-322 (483)
25 KOG2070|consensus 99.3 2.3E-12 4.9E-17 116.1 4.7 61 205-267 17-77 (661)
26 KOG2996|consensus 99.3 7.6E-12 1.6E-16 114.8 6.6 57 207-263 805-863 (865)
27 KOG0194|consensus 99.2 3.1E-11 6.7E-16 111.9 9.0 90 11-108 49-149 (474)
28 PF07653 SH3_2: Variant SH3 do 99.2 2.7E-11 5.9E-16 79.8 5.8 53 112-165 1-54 (55)
29 KOG3632|consensus 99.1 9.1E-11 2E-15 113.2 7.8 157 110-268 1138-1313(1335)
30 PF00018 SH3_1: SH3 domain; I 99.1 1.1E-10 2.5E-15 74.5 5.0 46 209-256 1-48 (48)
31 KOG0790|consensus 99.1 8.9E-11 1.9E-15 105.0 5.6 92 10-106 3-102 (600)
32 smart00326 SH3 Src homology 3 99.1 4E-10 8.7E-15 74.4 6.4 55 206-262 3-58 (58)
33 KOG3601|consensus 99.1 1.1E-10 2.4E-15 95.0 4.2 179 82-263 27-219 (222)
34 PF00018 SH3_1: SH3 domain; I 99.1 3.7E-10 8E-15 72.1 5.3 47 114-160 1-48 (48)
35 cd00174 SH3 Src homology 3 dom 99.0 6.5E-10 1.4E-14 72.3 5.6 51 208-260 2-53 (54)
36 KOG2199|consensus 99.0 6.3E-11 1.4E-15 104.5 0.6 55 207-263 217-271 (462)
37 KOG2070|consensus 99.0 2.1E-10 4.5E-15 103.7 2.3 57 111-168 18-74 (661)
38 KOG1118|consensus 98.9 8E-10 1.7E-14 94.5 4.8 59 205-265 306-364 (366)
39 smart00326 SH3 Src homology 3 98.9 4.4E-09 9.6E-14 69.3 6.7 55 111-165 3-57 (58)
40 KOG0162|consensus 98.9 1.6E-09 3.6E-14 102.1 5.8 55 206-262 1052-1106(1106)
41 cd00174 SH3 Src homology 3 dom 98.9 5.5E-09 1.2E-13 67.9 6.3 52 113-164 2-53 (54)
42 KOG4225|consensus 98.9 1.6E-09 3.6E-14 96.7 4.8 56 207-264 232-287 (489)
43 KOG2199|consensus 98.9 6.3E-10 1.4E-14 98.3 1.1 56 110-166 215-270 (462)
44 KOG1118|consensus 98.6 2.2E-08 4.7E-13 85.9 2.5 58 110-168 306-363 (366)
45 KOG2546|consensus 98.6 2.7E-08 5.9E-13 88.7 2.2 55 207-263 425-479 (483)
46 KOG3751|consensus 98.5 3.7E-08 8.1E-13 90.1 2.7 91 5-96 513-606 (622)
47 KOG2856|consensus 98.5 2.2E-08 4.7E-13 87.7 0.4 55 206-262 415-471 (472)
48 KOG0162|consensus 98.5 6.7E-08 1.4E-12 91.5 3.5 54 111-165 1052-1105(1106)
49 KOG4792|consensus 98.4 1.5E-07 3.4E-12 77.4 2.0 61 205-267 124-185 (293)
50 KOG2856|consensus 98.2 3.2E-07 6.9E-12 80.6 0.5 56 111-166 415-471 (472)
51 KOG2546|consensus 98.1 1.2E-06 2.6E-11 78.5 2.3 56 112-168 425-480 (483)
52 KOG0515|consensus 98.1 1.2E-06 2.6E-11 80.5 2.0 57 111-168 684-743 (752)
53 PF14633 SH2_2: SH2 domain; PD 98.1 2.9E-05 6.2E-10 65.4 10.0 81 12-94 39-123 (220)
54 KOG3655|consensus 98.1 9.3E-07 2E-11 80.4 0.8 56 205-262 427-483 (484)
55 KOG3875|consensus 98.0 5.8E-07 1.3E-11 77.3 -1.2 59 206-266 269-334 (362)
56 KOG3697|consensus 98.0 6.4E-06 1.4E-10 70.3 4.4 92 9-108 199-343 (345)
57 KOG1702|consensus 98.0 7.8E-06 1.7E-10 66.4 4.3 54 207-262 209-264 (264)
58 KOG0515|consensus 97.9 4.1E-06 8.8E-11 77.1 1.8 56 207-264 685-743 (752)
59 KOG1843|consensus 97.9 6.1E-06 1.3E-10 73.7 2.3 54 206-261 417-472 (473)
60 KOG3875|consensus 97.9 3.9E-06 8.4E-11 72.4 0.6 58 111-168 269-332 (362)
61 KOG1702|consensus 97.8 1.2E-05 2.6E-10 65.3 3.1 56 110-165 207-263 (264)
62 KOG3655|consensus 97.8 8.1E-06 1.7E-10 74.4 1.3 57 110-166 427-483 (484)
63 KOG4773|consensus 97.8 4.7E-06 1E-10 73.0 -0.5 68 207-276 177-244 (386)
64 KOG2222|consensus 97.8 2.8E-06 6.1E-11 77.3 -2.1 59 206-266 549-607 (848)
65 KOG3523|consensus 97.7 3.1E-06 6.7E-11 79.0 -1.9 58 207-266 610-669 (695)
66 KOG3632|consensus 97.7 3.1E-05 6.8E-10 75.9 4.1 60 207-266 1140-1206(1335)
67 KOG4278|consensus 97.7 4.4E-05 9.4E-10 72.4 4.7 60 205-266 90-150 (1157)
68 KOG1843|consensus 97.7 2.5E-05 5.5E-10 69.8 2.4 55 110-165 416-472 (473)
69 KOG4575|consensus 97.5 0.0001 2.2E-09 69.3 4.5 58 203-262 6-65 (874)
70 KOG2528|consensus 97.4 0.00012 2.6E-09 66.3 2.9 78 207-286 4-84 (490)
71 KOG3725|consensus 97.3 7.6E-05 1.6E-09 62.9 0.6 54 207-262 319-374 (375)
72 KOG4566|consensus 97.3 0.00047 1E-08 59.2 5.4 88 4-97 45-140 (258)
73 KOG3557|consensus 97.2 0.00014 3E-09 68.7 1.8 60 110-170 500-559 (721)
74 KOG3523|consensus 97.1 6.7E-05 1.5E-09 70.3 -1.9 58 112-169 610-668 (695)
75 KOG4773|consensus 96.8 0.0001 2.2E-09 64.8 -2.7 56 112-168 177-232 (386)
76 KOG3557|consensus 96.8 0.00051 1.1E-08 65.0 1.4 62 205-269 500-562 (721)
77 KOG4429|consensus 96.8 0.00025 5.4E-09 60.9 -0.6 55 206-262 364-418 (421)
78 KOG2222|consensus 96.7 0.0003 6.4E-09 64.4 -0.5 57 111-168 549-605 (848)
79 KOG2528|consensus 96.6 0.0017 3.7E-08 59.1 3.3 58 112-169 4-62 (490)
80 KOG3771|consensus 96.4 0.003 6.5E-08 58.0 3.7 52 207-260 402-454 (460)
81 KOG1856|consensus 96.4 0.0056 1.2E-07 61.7 5.4 82 12-95 1109-1194(1299)
82 KOG1451|consensus 96.3 0.0032 7E-08 59.2 3.3 53 208-262 759-812 (812)
83 KOG0609|consensus 96.2 0.0011 2.4E-08 61.8 -0.0 56 206-261 215-280 (542)
84 PF14633 SH2_2: SH2 domain; PD 96.2 0.0061 1.3E-07 51.4 4.1 73 18-95 141-219 (220)
85 KOG0609|consensus 96.2 0.0017 3.8E-08 60.5 0.8 55 111-165 215-280 (542)
86 PF14603 hSH3: Helically-exten 96.1 0.0092 2E-07 42.1 4.0 48 122-169 28-75 (89)
87 KOG3775|consensus 96.1 0.0043 9.4E-08 55.3 2.8 58 207-266 264-323 (482)
88 KOG0197|consensus 96.0 0.0024 5.3E-08 59.4 0.9 57 110-166 11-69 (468)
89 KOG3775|consensus 95.4 0.0094 2E-07 53.2 2.2 60 110-169 262-322 (482)
90 KOG1451|consensus 95.1 0.027 5.8E-07 53.3 4.2 56 110-166 756-812 (812)
91 PF08239 SH3_3: Bacterial SH3 94.9 0.079 1.7E-06 34.1 5.1 37 224-260 17-55 (55)
92 KOG4575|consensus 94.6 0.05 1.1E-06 51.9 4.7 58 111-168 9-67 (874)
93 PF08239 SH3_3: Bacterial SH3 94.3 0.11 2.4E-06 33.4 4.5 37 128-164 18-55 (55)
94 KOG3725|consensus 93.9 0.014 3E-07 49.6 -0.5 56 110-166 317-374 (375)
95 KOG4429|consensus 93.7 0.021 4.6E-07 49.4 0.3 54 112-166 365-418 (421)
96 PF14603 hSH3: Helically-exten 93.4 0.12 2.7E-06 36.5 3.7 43 221-263 30-73 (89)
97 KOG0199|consensus 93.3 0.31 6.8E-06 47.8 7.4 52 205-260 376-430 (1039)
98 smart00287 SH3b Bacterial SH3 93.2 0.32 7E-06 32.0 5.6 37 224-260 25-62 (63)
99 KOG1856|consensus 92.8 0.25 5.4E-06 50.5 6.2 81 12-98 1206-1290(1299)
100 KOG3771|consensus 92.8 0.058 1.3E-06 49.8 1.8 53 110-163 400-453 (460)
101 KOG3565|consensus 92.6 0.06 1.3E-06 52.6 1.7 56 207-264 580-638 (640)
102 COG3103 SH3 domain protein [Si 92.4 0.23 4.9E-06 41.5 4.6 103 128-262 49-152 (205)
103 PF06347 SH3_4: Bacterial SH3 92.3 0.59 1.3E-05 30.1 5.7 36 223-259 18-53 (55)
104 KOG0199|consensus 91.8 0.18 3.9E-06 49.4 3.7 52 113-164 377-430 (1039)
105 KOG3812|consensus 91.4 0.13 2.8E-06 45.7 2.2 49 208-256 61-117 (475)
106 smart00287 SH3b Bacterial SH3 90.9 0.6 1.3E-05 30.7 4.7 36 128-163 26-61 (63)
107 PRK10884 SH3 domain-containing 89.5 0.46 1E-05 39.8 3.9 42 128-169 49-91 (206)
108 PRK10884 SH3 domain-containing 87.9 0.7 1.5E-05 38.8 3.9 39 224-262 48-88 (206)
109 PF02762 Cbl_N3: CBL proto-onc 87.8 3.5 7.6E-05 28.5 6.5 43 12-55 3-47 (86)
110 KOG4384|consensus 85.5 0.44 9.5E-06 42.6 1.5 63 207-269 138-200 (361)
111 PF06347 SH3_4: Bacterial SH3 85.2 2 4.2E-05 27.6 4.2 35 127-163 19-53 (55)
112 KOG0040|consensus 81.0 0.044 9.4E-07 57.0 -7.3 57 207-265 970-1026(2399)
113 KOG3565|consensus 79.1 0.56 1.2E-05 46.0 -0.3 58 110-167 578-637 (640)
114 KOG3705|consensus 78.0 2.2 4.8E-05 39.0 3.1 53 207-261 511-565 (580)
115 PF12913 SH3_6: SH3 domain of 76.0 8.5 0.00019 24.8 4.6 34 223-256 20-54 (54)
116 PRK13914 invasion associated s 75.5 5.2 0.00011 37.9 4.9 38 225-262 104-142 (481)
117 PRK13914 invasion associated s 74.4 4.8 0.0001 38.1 4.5 39 128-166 104-142 (481)
118 COG3103 SH3 domain protein [Si 74.1 6.2 0.00013 33.0 4.6 42 224-265 48-91 (205)
119 smart00743 Agenet Tudor-like d 70.3 6.4 0.00014 25.7 3.2 24 225-248 2-25 (61)
120 KOG3812|consensus 68.8 2.3 4.9E-05 38.0 0.9 47 114-160 62-117 (475)
121 KOG3705|consensus 66.5 5.8 0.00013 36.4 3.0 54 112-165 511-565 (580)
122 KOG1314|consensus 65.3 7.6 0.00016 35.0 3.5 46 219-265 329-386 (414)
123 KOG3667|consensus 64.9 8.5 0.00018 37.7 4.0 53 11-64 563-616 (682)
124 KOG0040|consensus 64.2 0.16 3.4E-06 53.2 -7.9 57 112-169 970-1026(2399)
125 smart00743 Agenet Tudor-like d 60.7 13 0.00029 24.1 3.3 22 128-149 2-23 (61)
126 PF11302 DUF3104: Protein of u 60.7 11 0.00025 25.9 3.0 25 223-247 3-33 (75)
127 KOG3508|consensus 60.5 3 6.6E-05 42.2 0.2 55 11-65 81-136 (932)
128 smart00557 IG_FLMN Filamin-typ 48.2 27 0.00058 24.9 3.5 26 31-56 53-78 (93)
129 COG3807 Uncharacterized protei 44.2 86 0.0019 24.9 5.8 34 129-163 61-94 (171)
130 PF15517 TBPIP_N: TBP-interact 40.8 24 0.00053 25.2 2.1 11 19-29 48-58 (99)
131 KOG1785|consensus 40.7 44 0.00096 30.8 4.2 46 12-58 257-305 (563)
132 PF00630 Filamin: Filamin/ABP2 32.6 47 0.001 23.6 2.7 25 32-56 68-92 (101)
133 KOG3580|consensus 24.9 1.2E+02 0.0026 29.8 4.5 50 206-257 505-563 (1027)
134 PF07935 SSV1_ORF_D-335: ORF D 23.0 2.6E+02 0.0056 19.1 4.8 44 34-96 6-49 (72)
135 KOG4384|consensus 20.2 78 0.0017 28.7 2.2 57 112-169 138-196 (361)
No 1
>KOG4792|consensus
Probab=100.00 E-value=2e-46 Score=302.94 Aligned_cols=268 Identities=54% Similarity=0.917 Sum_probs=223.8
Q ss_pred CCCCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcc---eEEee
Q psy5076 1 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ---TCYKI 77 (288)
Q Consensus 1 ~~~~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~---~~~~~ 77 (288)
|+.+||+.+...||+|.|||++|.++|+..+. |.||||+|++.+|+|+|||+.+..|-||.|........+ ..|.|
T Consensus 1 ~~~~FD~~er~swYfg~mSRqeA~~lL~~~r~-G~FLvRDSst~pGdYvLsV~E~srVshYiIn~~~p~~~~~~~~~~rI 79 (293)
T KOG4792|consen 1 MAGNFDSSERSSWYFGPMSRQEAVALLQGQRH-GVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSPPSPAQPPPSRLRI 79 (293)
T ss_pred CCCccChhhccceecCcccHHHHHHHhcCcce-eeEEEecCCCCCCceEEEEecCcceeeeeecCCCCCccCCCcceeee
Confidence 68899999999999999999999999998886 999999999999999999999999999999984332211 13999
Q ss_pred CCcccCChhhhhhhheecccCCCccccccccee------------eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCe
Q psy5076 78 GDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTI------------EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHW 145 (288)
Q Consensus 78 ~~~~F~sl~~LV~~y~~~~l~~~~l~~p~~~~~------------~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~w 145 (288)
++..|++|+.|++||+.+-|+.+.|+.|++++. ..++++|+|.+.+..+|.|++|+++.++++.+..|
T Consensus 80 gdQ~Fd~lPaLL~fykihyLdtttLi~p~~r~~~~~~~~~~~~~~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqW 159 (293)
T KOG4792|consen 80 GDQEFDSLPALLEFYKIHYLDTTTLIEPAKRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQW 159 (293)
T ss_pred ccccccchHHHHhheeEeeeccccccccccccccccCcccchhhhhheeeeeccCCCccccCCcccCcEEEEecCcHHHh
Confidence 999999999999999999999889999988752 24678999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCeEecccCCc-cccc-----ccCCCCCCCCCC--CCCCCccccccccCCCCCeEEEEEEcccCC
Q psy5076 146 WTAQNISGEVGSIPVPYVQKYSEGMS-ILSL-----RNLHLDSSSHHV--PQQQTTPVRKTHLEVKLPAFARVKQVRVPN 217 (288)
Q Consensus 146 w~~~~~~g~~G~vP~~~v~~~~~~~~-~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (288)
|..++..|++|++|.+||+....... ...+ ..+.+.+..+.. +++..+......+.+.+|.+++++++..|.
T Consensus 160 W~Arns~Gk~GmIPvpYVe~~~~~~~~~~~~~~ga~e~si~q~~~g~e~~s~a~~s~~~~l~l~~~lPa~Arv~q~RVPn 239 (293)
T KOG4792|consen 160 WNARNSEGKRGMIPVPYVEKYRPASASVSALIGGASESSIPQSGGGAERFSSASTSSDTPLPLQQNLPAYARVIQKRVPN 239 (293)
T ss_pred hhhhccCCcccceechHHHhhhhhhcccccccCCcccccCCCCCCCCCCCCCCCcccCCcCccccCCChheeeehhcCCC
Confidence 99999999999999999998765431 1111 112222222222 222223333344555579999999999999
Q ss_pred CCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCCcc
Q psy5076 218 AYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSV 269 (288)
Q Consensus 218 ~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~~ 269 (288)
|+++..|.++.||+|.|.++..+|.|+|+++|+.|.||-.||+.+..+++.+
T Consensus 240 AYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~d~~~~de 291 (293)
T KOG4792|consen 240 AYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFTDVQNPDE 291 (293)
T ss_pred ccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEeeccCCcCc
Confidence 9999999999999999999999999999999999999999999998887643
No 2
>KOG1264|consensus
Probab=99.96 E-value=2.9e-29 Score=234.22 Aligned_cols=257 Identities=19% Similarity=0.247 Sum_probs=164.5
Q ss_pred CCCCCCCccccCCC-HHHHHHHHcC-----CCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCC
Q psy5076 6 DPHDRNSWYFGMMT-RQEAQAILLS-----EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD 79 (288)
Q Consensus 6 ~~~~~~~Wy~g~is-r~~ae~lL~~-----~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~ 79 (288)
..|-.+.||||.+. |.+|++||.+ +..||+||||+|++..|+|+||++.+|+|.|+||+....+...++|..++
T Consensus 529 ElH~~E~WFHgkle~R~eAekll~eycke~G~~dGtFlVReS~tFvgDytLSfwr~grv~HcRIrsk~e~gt~Kyyl~dN 608 (1267)
T KOG1264|consen 529 ELHFGEKWFHGKLEGRTEAEKLLQEYCKETGGKDGTFLVRESETFVGDYTLSFWRSGRVQHCRIRSKMEGGTLKYYLTDN 608 (1267)
T ss_pred hhccchhhhhcccccchHHHHHHHHHHHHhCCCCccEEEeeccccccceeeeeeECCceeeEEEEeeecCCceeEEEecc
Confidence 34667899999999 9999999975 35679999999999999999999999999999999776554556455568
Q ss_pred cccCChhhhhhhheecccCC----CcccccccceeeEEeeeccCCCC---C-CCCCC-CCC----------CCEEEEEEe
Q psy5076 80 KTFSDLPSLLAFYKVHYLDT----SPLIKPATKTIEKVIAKYDFDGN---D-PDDLP-FKK----------NDILIVVSK 140 (288)
Q Consensus 80 ~~F~sl~~LV~~y~~~~l~~----~~l~~p~~~~~~~~~a~~~~~~~---~-~~eLs-~~~----------g~~i~vl~~ 140 (288)
..|+||.+||.||+.+.|.+ ..|+.|||++..+-.-.+-+... . .+-|. +.+ +.-..++..
T Consensus 609 ~vfdslY~LI~~Y~~~~Lr~aeF~m~LtePvPqp~~He~k~W~~as~treqAE~mL~rvp~DGaFLiR~~~~~nsy~iSf 688 (1267)
T KOG1264|consen 609 LVFDSLYALIQHYRETHLRCAEFEMRLTEPVPQPNPHESKPWYHASLTREQAEDMLMRVPRDGAFLIRKREGSNSYAISF 688 (1267)
T ss_pred hhHHHHHHHHHHHHhccccccceEEEecCCCCCCCcccCCccccccccHHHHHHHHhhCccCcceEEEeccCCceEEEEE
Confidence 89999999999999999984 57999999864432221111110 0 00011 111 111223332
Q ss_pred -cCCCeEEEEe-CCCcEEEEeCCCeEeccc------------------CCcccccc---cCCCCCCCCCCCCCCCccccc
Q psy5076 141 -DEEHWWTAQN-ISGEVGSIPVPYVQKYSE------------------GMSILSLR---NLHLDSSSHHVPQQQTTPVRK 197 (288)
Q Consensus 141 -~~~~ww~~~~-~~g~~G~vP~~~v~~~~~------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 197 (288)
.++..|.|+. .+|+.-.+-..-++.+.. +.....++ ...-.++.......+..+...
T Consensus 689 r~~gkikHcRi~rdGr~fvl~t~~FesLv~lv~yY~k~~lyR~mkLr~PVnee~l~~~~~e~d~~a~~d~~r~pg~yme~ 768 (1267)
T KOG1264|consen 689 RARGKIKHCRINRDGRHFVLGTSAFESLVELVSYYEKHPLYRKMKLRYPVNEELLERYNTERDINALYDVSRMPGDYMEI 768 (1267)
T ss_pred EEcCcEeEEEEccCceEEEeccHHHHHHHHHHHHHhcChhhhcccccCcCCHHHHHHhhhhcccccccccccCCCCcccc
Confidence 2344677764 334433222111111100 00000000 000000000000001111111
Q ss_pred cc-cCCCCCeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCC-eeeEecCCcEEEcCCCCC
Q psy5076 198 TH-LEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNG-KTGHFPFTHVEFIPTNET 267 (288)
Q Consensus 198 ~~-~~~~~~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~-~~G~~P~~~v~~~~~~~~ 267 (288)
.. ++ .+.++|||+| .|..++||+|.+|.+|.++++..+|||.|..+| ..+|||+|||+.+.+...
T Consensus 769 n~~~~---~vt~kAL~~Y--ka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~~~~ 835 (1267)
T KOG1264|consen 769 NPSMP---QVTVKALYDY--KAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEISTADF 835 (1267)
T ss_pred Ccccc---chhhhhhhcc--ccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhccccc
Confidence 11 11 2468999999 778888999999999999999999999999986 689999999999988654
No 3
>KOG1264|consensus
Probab=99.95 E-value=2.3e-28 Score=228.26 Aligned_cols=158 Identities=29% Similarity=0.562 Sum_probs=140.2
Q ss_pred CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccCCh
Q psy5076 6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDL 85 (288)
Q Consensus 6 ~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl 85 (288)
.+|++++|||..++|++||++|..-+.||+||||.+. ....|+||++.+++|+||||.+.+.. |.++...|++|
T Consensus 643 ~~He~k~W~~as~treqAE~mL~rvp~DGaFLiR~~~-~~nsy~iSfr~~gkikHcRi~rdGr~-----fvl~t~~FesL 716 (1267)
T KOG1264|consen 643 NPHESKPWYHASLTREQAEDMLMRVPRDGAFLIRKRE-GSNSYAISFRARGKIKHCRINRDGRH-----FVLGTSAFESL 716 (1267)
T ss_pred CcccCCccccccccHHHHHHHHhhCccCcceEEEecc-CCceEEEEEEEcCcEeEEEEccCceE-----EEeccHHHHHH
Confidence 4899999999999999999999998888999999444 46789999999999999999986544 99998899999
Q ss_pred hhhhhhheecccC-CCcccccccce--------------------------------eeEEeeeccCCCCCCCCCCCCCC
Q psy5076 86 PSLLAFYKVHYLD-TSPLIKPATKT--------------------------------IEKVIAKYDFDGNDPDDLPFKKN 132 (288)
Q Consensus 86 ~~LV~~y~~~~l~-~~~l~~p~~~~--------------------------------~~~~~a~~~~~~~~~~eLs~~~g 132 (288)
.+||+||.+++|- ...|.+|+..+ ...+.|+++|.+..++||+|.++
T Consensus 717 v~lv~yY~k~~lyR~mkLr~PVnee~l~~~~~e~d~~a~~d~~r~pg~yme~n~~~~~vt~kAL~~Yka~r~DELSFpk~ 796 (1267)
T KOG1264|consen 717 VELVSYYEKHPLYRKMKLRYPVNEELLERYNTERDINALYDVSRMPGDYMEINPSMPQVTVKALYDYKAKRSDELSFPKG 796 (1267)
T ss_pred HHHHHHHhcChhhhcccccCcCCHHHHHHhhhhcccccccccccCCCCccccCccccchhhhhhhccccCCccccccccc
Confidence 9999999999986 67888887763 12477999999999999999999
Q ss_pred CEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076 133 DILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169 (288)
Q Consensus 133 ~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~ 169 (288)
-+|.+++++++|||.|...+...+|||+|||+++...
T Consensus 797 aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~~ 833 (1267)
T KOG1264|consen 797 AIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEISTA 833 (1267)
T ss_pred ceeEeeeccCCceeecccccceeeeccHHHhhhhccc
Confidence 9999999999999999965567899999999987763
No 4
>KOG2996|consensus
Probab=99.94 E-value=8.5e-27 Score=211.31 Aligned_cols=151 Identities=30% Similarity=0.598 Sum_probs=133.7
Q ss_pred CCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCChhhh
Q psy5076 10 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPSL 88 (288)
Q Consensus 10 ~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl~~L 88 (288)
..+||.|.|.|.+||.+|+.... |+||||.+....+.|++|+++++.|+|++|...++. |+|. ...|.++.||
T Consensus 684 ~~~WyaG~MERaqaes~Lk~~~n-gT~LVR~r~kea~e~AISikynnevKHikI~~~dg~-----~~i~E~k~F~sl~EL 757 (865)
T KOG2996|consen 684 EFPWYAGEMERAQAESTLKNRPN-GTYLVRYRTKEAKEFAISIKYNNEVKHIKIETNDGK-----VHITEDKKFNSLVEL 757 (865)
T ss_pred hhhhhcchHhhhhhhhHhhcCCC-ceEEEEecccchhheeEEEEeccccceEEEEecCCe-----EEechhhhhhhHHHH
Confidence 35899999999999999987766 999999998878899999999999999999988654 8887 5799999999
Q ss_pred hhhheecccC------CCcccccccce--------------------eeEEeeeccCCCCCCCCCCCCCCCEEEEEEec-
Q psy5076 89 LAFYKVHYLD------TSPLIKPATKT--------------------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD- 141 (288)
Q Consensus 89 V~~y~~~~l~------~~~l~~p~~~~--------------------~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~- 141 (288)
|+||+.++|. .++|+.|+..+ ...+++-|||-+.+-.+|+|+.||+|.++.+.
T Consensus 758 VeyYq~~sLke~Fk~LDTtLk~Pyke~e~sa~~~~~~~~~sv~s~~~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g 837 (865)
T KOG2996|consen 758 VEYYQSHSLKEIFKALDTTLKFPYKEPEHSAGQRGNRAGNSVLSPKVVGTAVARYDFCARDMRELSLKEGDVVKIYDKVG 837 (865)
T ss_pred HHHHHhccHHHHHHHhhhhhcCCCcChhhhhhhccccccccccCcceeeeeeeccccCCCchhhcccccCCEEEEehhcc
Confidence 9999999985 46788888732 34678889999999999999999999999875
Q ss_pred -CCCeEEEEeCCCcEEEEeCCCeEecc
Q psy5076 142 -EEHWWTAQNISGEVGSIPVPYVQKYS 167 (288)
Q Consensus 142 -~~~ww~~~~~~g~~G~vP~~~v~~~~ 167 (288)
+.|||.|. .+|+.||||++||++..
T Consensus 838 ~d~GWWkGe-vngrvGwFPstYVee~~ 863 (865)
T KOG2996|consen 838 EDQGWWKGE-VNGRVGWFPSTYVEEDD 863 (865)
T ss_pred ccCceecce-ecCcccccccccccccC
Confidence 46999999 99999999999998754
No 5
>KOG4226|consensus
Probab=99.87 E-value=5.9e-22 Score=165.22 Aligned_cols=155 Identities=25% Similarity=0.378 Sum_probs=115.6
Q ss_pred eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCCcccc---------cccCCCC
Q psy5076 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILS---------LRNLHLD 181 (288)
Q Consensus 111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~~~~~---------~~~~~~~ 181 (288)
..++|.+||.++...||.+++++.+.+++ +..-||++++...+.|+||+|||+..+....... +......
T Consensus 5 ~~vvak~dy~aq~~qeldikkner~~lld-dsk~wwrvrns~n~tgyvpsnyverkn~~~~~si~knlkd~~g~kt~~k~ 83 (379)
T KOG4226|consen 5 VIVVAKWDYTAQQDQELDIKKNERLWLLD-DSKTWWRVRNSANRTGYVPSNYVERKNSLKKGSIVKNLKDTLGLKTRRKT 83 (379)
T ss_pred EEEEEEechhcccchhccccccceEEEEc-CCccceeeecccccCCcccchhhhcccchhhhHHHHhhhhccccccccCC
Confidence 45789999999999999999999998888 5568999999889999999999998765532111 1122222
Q ss_pred CCCCCCCCCCCccccccccCCCCCeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEE
Q psy5076 182 SSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEF 261 (288)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~ 261 (288)
++....+++.......++....+...+.+.|.| .++.++||+|-+|..|.|++++.+|||.|..+|+.||||+|||.+
T Consensus 84 s~~~~~~sp~~d~~~ppd~~~~~~t~AvVKf~Y--~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E 161 (379)
T KOG4226|consen 84 SARDASPSPSTDAEYPPDRIYDLNTPAVVKFNY--VAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTE 161 (379)
T ss_pred CccccCCCCCccccCCcchhhhcCCceEEEEee--ccccccccccccCcEEEEEEeccCcceecccCCeeccccccceeh
Confidence 333333333322222222211222347778888 678888999999999999999999999999999999999999998
Q ss_pred cCCCCCc
Q psy5076 262 IPTNETS 268 (288)
Q Consensus 262 ~~~~~~~ 268 (288)
..++.++
T Consensus 162 ~~ds~~g 168 (379)
T KOG4226|consen 162 EVDSAAG 168 (379)
T ss_pred hcccccc
Confidence 8777543
No 6
>KOG4226|consensus
Probab=99.85 E-value=2e-21 Score=162.01 Aligned_cols=142 Identities=18% Similarity=0.348 Sum_probs=108.5
Q ss_pred EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCCcccc--cccCCCCCCCCCCCC
Q psy5076 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILS--LRNLHLDSSSHHVPQ 189 (288)
Q Consensus 112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~ 189 (288)
.+++.|.|.++..+||++.+|+.|.|++++.+|||.|. .+|+.||||+||+.+..+...... .-+.++..+..+.++
T Consensus 109 ~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~-~ng~VGWFPSNYv~E~~ds~~gd~~s~~~~~~~A~a~n~~~ 187 (379)
T KOG4226|consen 109 PAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGS-YNGQVGWFPSNYVTEEVDSAAGDSPSFLSLRKAASASNGQG 187 (379)
T ss_pred ceEEEEeeccccccccccccCcEEEEEEeccCcceecc-cCCeeccccccceehhccccccCCccceecchhhcccCCCC
Confidence 37788999999999999999999999999999999999 699999999999988766533211 000111111000000
Q ss_pred CCCccccccccCCCCCeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC--CCCeeEEEe-CCeeeEecCCcEEEcCCCC
Q psy5076 190 QQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGEL-NGKTGHFPFTHVEFIPTNE 266 (288)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~--~~~w~~~~~-~~~~G~~P~~~v~~~~~~~ 266 (288)
...-..++|||.| .+....||+|++||.+.|+++. |.+||.++. .|+.|+||.|||+.+.+..
T Consensus 188 ------------s~vl~vVvaLYsF--sssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~~ 253 (379)
T KOG4226|consen 188 ------------SRVLHVVVALYSF--SSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDGP 253 (379)
T ss_pred ------------ceEEEEEEEEecc--cCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccCc
Confidence 1112368999999 5677779999999999999876 679997755 6999999999999998877
Q ss_pred Cc
Q psy5076 267 TS 268 (288)
Q Consensus 267 ~~ 268 (288)
..
T Consensus 254 ~t 255 (379)
T KOG4226|consen 254 ST 255 (379)
T ss_pred cc
Confidence 54
No 7
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=99.85 E-value=5.5e-21 Score=137.90 Aligned_cols=82 Identities=37% Similarity=0.722 Sum_probs=74.0
Q ss_pred CCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCC-cccCChhhhh
Q psy5076 11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD-KTFSDLPSLL 89 (288)
Q Consensus 11 ~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~-~~F~sl~~LV 89 (288)
++||||.|+|++||++|...+ +|+||||.|++..+.|+||++.++.++||+|.....+ . |.+.+ ..|+||.+||
T Consensus 1 ~~w~~g~i~r~~Ae~lL~~~~-~G~FLvR~s~~~~~~~~Lsv~~~~~~~h~~I~~~~~~---~-~~l~~~~~F~sl~eLI 75 (84)
T smart00252 1 QPWYHGFISREEAEKLLKNEG-DGDFLVRDSESEPGDYVLSVRVKGKVKHYRIRRNEDG---K-FYLDGGRKFPSLVELV 75 (84)
T ss_pred CCeecccCCHHHHHHHHhcCC-CcEEEEEcCCCCCCCEEEEEEECCEEEEEEEEECCCC---c-EEECCCCccCCHHHHH
Confidence 489999999999999998866 5999999999888999999999999999999987643 3 88885 8999999999
Q ss_pred hhheeccc
Q psy5076 90 AFYKVHYL 97 (288)
Q Consensus 90 ~~y~~~~l 97 (288)
+||+.+++
T Consensus 76 ~~y~~~~~ 83 (84)
T smart00252 76 EHYQKNSL 83 (84)
T ss_pred HHHhhCCC
Confidence 99998765
No 8
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=99.85 E-value=5.7e-21 Score=140.72 Aligned_cols=89 Identities=37% Similarity=0.706 Sum_probs=77.0
Q ss_pred CccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC--CcccCChhhhh
Q psy5076 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG--DKTFSDLPSLL 89 (288)
Q Consensus 12 ~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~--~~~F~sl~~LV 89 (288)
+||||.|+|++|+++|+.. .+|+||||.|.+..+.|+||++.+++++||+|....++ +.+. ...|+||.+||
T Consensus 1 ~w~~g~i~r~~Ae~~L~~~-~~G~FLiR~s~~~~~~~~Lsv~~~~~v~H~~I~~~~~~-----~~~~~~~~~f~sl~eLv 74 (94)
T cd00173 1 PWYHGPISREEAEELLKKK-PDGTFLVRDSESSPGDYVLSVRVKGKVKHYRIERTDDG-----YYLLGEGRSFPSLPELI 74 (94)
T ss_pred CccccCCCHHHHHHHHhcC-CCceEEEEecCCCCCCEEEEEEECCEEEEEEEEECCCC-----eEEecCCCccCCHHHHH
Confidence 6999999999999999885 44999999999878999999999999999999988765 4444 78999999999
Q ss_pred hhheeccc--C-CCcccccc
Q psy5076 90 AFYKVHYL--D-TSPLIKPA 106 (288)
Q Consensus 90 ~~y~~~~l--~-~~~l~~p~ 106 (288)
+||+.+++ . ++.|..|+
T Consensus 75 ~~y~~~~~~~~~~~~L~~p~ 94 (94)
T cd00173 75 EHYQKNPLSDGLGVKLRYPV 94 (94)
T ss_pred HHHhhCccCCCcccEeCCcC
Confidence 99999885 2 55666664
No 9
>KOG4348|consensus
Probab=99.85 E-value=1.3e-21 Score=172.51 Aligned_cols=152 Identities=30% Similarity=0.536 Sum_probs=112.9
Q ss_pred eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCCcccc------cc------c
Q psy5076 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILS------LR------N 177 (288)
Q Consensus 110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~~~~~------~~------~ 177 (288)
.+.|++.|.|.+++.+||.|+.||+|.++...+.|||.|. .+|..|+||+|||.++........ ++ +
T Consensus 100 ~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~-Lngk~GmFPsNFVkel~~~sde~~~aqd~~~S~stlags 178 (627)
T KOG4348|consen 100 ARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGK-LNGKVGMFPSNFVKELPTPSDESAAAQDPAASASTLAGS 178 (627)
T ss_pred ceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhce-ecCcccccchhhceecCCCCcchhhhcCcccchhhhcCc
Confidence 5679999999999999999999999999999999999999 899999999999998876533110 00 0
Q ss_pred CCCCCCC--------CC--CCC-------------------------------------------CCCccccccccC--C
Q psy5076 178 LHLDSSS--------HH--VPQ-------------------------------------------QQTTPVRKTHLE--V 202 (288)
Q Consensus 178 ~~~~~~~--------~~--~~~-------------------------------------------~~~~~~~~~~~~--~ 202 (288)
..+.++. ++ +|. .++..+...++. .
T Consensus 179 t~~~ps~s~~SE~a~gsv~qPKkI~g~gfgdIfk~~pVklr~rt~~sete~~p~~~~i~~~l~asT~s~d~tktd~~~~t 258 (627)
T KOG4348|consen 179 TARTPSKSIGSEVAMGSVTQPKKIDGTGFGDIFKPAPVKLRLRTKFSETEKKPEKPFISSALSASTQSVDITKTDTAETT 258 (627)
T ss_pred CCCCCcccccchhhcccccCcccccCCCcccccCCccceecccccccccccccccchhhhccCccccCccccccccccch
Confidence 0111100 00 110 001111122221 1
Q ss_pred CCCeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCcEEEcCC
Q psy5076 203 KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFIPT 264 (288)
Q Consensus 203 ~~~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~--~~~w~~~~~~~~~G~~P~~~v~~~~~ 264 (288)
+...||+++|.| .++..+||+|+.||+|.++.+. +.|||+|+++|+.|.||-|||+.++.
T Consensus 259 KtKeycrv~F~Y--e~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~~ 320 (627)
T KOG4348|consen 259 KTKEYCRVKFVY--EPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQV 320 (627)
T ss_pred hhhhheeeeeee--cCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcCC
Confidence 235699999999 5577779999999999998765 67999999999999999999999873
No 10
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=99.84 E-value=1.7e-20 Score=133.10 Aligned_cols=76 Identities=41% Similarity=0.777 Sum_probs=68.8
Q ss_pred ccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCChhhhhhh
Q psy5076 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSDLPSLLAF 91 (288)
Q Consensus 13 Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~sl~~LV~~ 91 (288)
||||.|+|++||++|+...++|+||||.|.+.++.|+|||+.+++++||+|.+...+ . |++. +..|+||.+||+|
T Consensus 1 W~~g~isr~~Ae~~L~~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~v~h~~I~~~~~~---~-~~~~~~~~F~sl~~LV~~ 76 (77)
T PF00017_consen 1 WFHGFISRQEAERLLMQGKPDGTFLVRPSSSKPGKYVLSVRFDGKVKHFRINRTENG---G-YFLSDGKKFPSLSDLVEH 76 (77)
T ss_dssp TBEESSHHHHHHHHHHTTSSTTEEEEEEESSSTTSEEEEEEETTEEEEEEEEEETTS---E-EESSTSSEBSSHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHhcCCCCeEEEEeccccccccccccccccccEEEEEEecCCc---e-EEccCCCcCCCHHHHHHh
Confidence 999999999999999985556999999999888999999999999999999998765 4 6665 5789999999999
Q ss_pred h
Q psy5076 92 Y 92 (288)
Q Consensus 92 y 92 (288)
|
T Consensus 77 y 77 (77)
T PF00017_consen 77 Y 77 (77)
T ss_dssp H
T ss_pred C
Confidence 8
No 11
>KOG3601|consensus
Probab=99.82 E-value=8.4e-21 Score=153.31 Aligned_cols=157 Identities=23% Similarity=0.416 Sum_probs=131.9
Q ss_pred CCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccC
Q psy5076 4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFS 83 (288)
Q Consensus 4 ~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~ 83 (288)
++......+||+|.|+|..||++|+.... |+||+|.+...+|+|.++++....|.||++.+...+ + |++....|.
T Consensus 51 Nai~~~~~~wve~~i~r~~ae~~l~~~~~-G~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~---k-~~lw~skfn 125 (222)
T KOG3601|consen 51 NAIRMKPHEWVEGLIPRPLAEDLLSKKRD-GDFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFG---K-YFLWSSKFN 125 (222)
T ss_pred cccccccccceecccccchhhhhhhccCc-chhhhhhhhcCcccccccccCCCCceeccccccCcc---c-cccchhhcc
Confidence 44444456999999999999999988555 999999999999999999999999999999987655 4 888888999
Q ss_pred ChhhhhhhheecccCC-----Ccccc----ccc--ceeeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCC
Q psy5076 84 DLPSLLAFYKVHYLDT-----SPLIK----PAT--KTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS 152 (288)
Q Consensus 84 sl~~LV~~y~~~~l~~-----~~l~~----p~~--~~~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~ 152 (288)
++.+||+||.+.+... ..... |++ .+.....+.++|.++.+.++.|++|+.+.|+...+..||.|. ..
T Consensus 126 slnplv~Y~rt~s~~r~~qi~l~d~~~~~~~~~~~~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs-~l 204 (222)
T KOG3601|consen 126 SLNPLVSYHRTASQSRNQQIFLRDMEPPPAPLPPAPTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGS-KL 204 (222)
T ss_pred CCCCCcccCcccccccceeeeecccccccccCCCCccchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhcc-cc
Confidence 9999999999887541 11111 233 235567899999999999999999999999999999999999 88
Q ss_pred CcEEEEeCCCeEec
Q psy5076 153 GEVGSIPVPYVQKY 166 (288)
Q Consensus 153 g~~G~vP~~~v~~~ 166 (288)
|+.|+||++|+...
T Consensus 205 g~agiFpagyv~p~ 218 (222)
T KOG3601|consen 205 GRAGIFPAGYVAPS 218 (222)
T ss_pred CceeeecCcccccc
Confidence 99999999998643
No 12
>KOG1029|consensus
Probab=99.79 E-value=6.3e-20 Score=171.29 Aligned_cols=131 Identities=24% Similarity=0.441 Sum_probs=107.4
Q ss_pred cccceeeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CC---CcEEEEeCCCeEecccCCcccccccCCC
Q psy5076 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-IS---GEVGSIPVPYVQKYSEGMSILSLRNLHL 180 (288)
Q Consensus 105 p~~~~~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~---g~~G~vP~~~v~~~~~~~~~~~~~~~~~ 180 (288)
|.+++...+.++.+|.+..+..|++..|++|.|..+...|||.|.. .+ .+.||||++||.-+.....+..
T Consensus 974 ~~~kkpeiAqVia~yvAs~peQLsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~~s~raT------ 1047 (1118)
T KOG1029|consen 974 PTPKKPEIAQVIADYVASGPEQLSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEPGSGRAT------ 1047 (1118)
T ss_pred CCCCCchhhhhhhhhhccCchhccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccCCCCcCC------
Confidence 3444456677889999999999999999999999999999999974 22 3679999999988887633221
Q ss_pred CCCCCCCCCCCCccccccccCCCCCeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEE
Q psy5076 181 DSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260 (288)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~ 260 (288)
|. . ...|.+.++||| .|+.++||+|.+||+|.|+.+.+.+||.|+++|+.|+||+|||.
T Consensus 1048 -------Pa----------~--~~v~qviamYdY--~AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~ 1106 (1118)
T KOG1029|consen 1048 -------PA----------T--RPVCQVIAMYDY--EAQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQ 1106 (1118)
T ss_pred -------CC----------C--CccceeEEeecc--ccCCcccccccCCCEEEecCCCChhhhcccccCccccCcccccc
Confidence 00 0 002568899999 78999999999999999999999999999999999999999995
Q ss_pred Ec
Q psy5076 261 FI 262 (288)
Q Consensus 261 ~~ 262 (288)
..
T Consensus 1107 k~ 1108 (1118)
T KOG1029|consen 1107 KQ 1108 (1118)
T ss_pred cc
Confidence 44
No 13
>KOG4225|consensus
Probab=99.77 E-value=2e-18 Score=152.77 Aligned_cols=147 Identities=27% Similarity=0.431 Sum_probs=105.5
Q ss_pred EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCCcccccc--------c--C---
Q psy5076 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLR--------N--L--- 178 (288)
Q Consensus 112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~~~~~~~--------~--~--- 178 (288)
.++|+|+|.++...||+|.+||+|.|+.+.+..|+.|. .+|+.|+||++||+.+.......+.. . +
T Consensus 232 ~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGE-hhGr~GifP~sYvE~~~~~e~~qP~~~~P~q~~~~g~a~A~ 310 (489)
T KOG4225|consen 232 AARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGE-HHGRVGIFPASYVEILTPREKAQPARPPPQQVLEQGEAIAK 310 (489)
T ss_pred hhhheeccccCCccccccCCCCEEEEEeeccCceeeee-ecceecceechheeecCcccccCcCCCCccccccccccccc
Confidence 47899999999999999999999999999999999999 89999999999999987732111100 0 0
Q ss_pred ------CCCCCC----------------------------CCCCC-----------------------------------
Q psy5076 179 ------HLDSSS----------------------------HHVPQ----------------------------------- 189 (288)
Q Consensus 179 ------~~~~~~----------------------------~~~~~----------------------------------- 189 (288)
.++..+ +..|.
T Consensus 311 y~F~~~s~~Els~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev~~~~~~~~~~~~~~~p~~p~~s~~~~~~~~ 390 (489)
T KOG4225|consen 311 YNFNADSPVELSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEVIKSPKLELPLDYPDLPIPPRSSNELRPLSE 390 (489)
T ss_pred CCCCCCCchhcccccCceEEEEEeccCceeeccccccccccccchhHhhhhhccccccccccCCCCCCcccchhhccccc
Confidence 000000 00000
Q ss_pred ---------CCCccc--------cccc--------cCC-CCCeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCee
Q psy5076 190 ---------QQTTPV--------RKTH--------LEV-KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQW 243 (288)
Q Consensus 190 ---------~~~~~~--------~~~~--------~~~-~~~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~ 243 (288)
.++... ..+. .+. +-+.-++|||.| .++..+||-|..||+|.|++++|+||+
T Consensus 391 ~s~~~~~~~~~t~~~~q~~~n~~qepr~~~~~~~~~qt~~~~l~yrAly~Y--~pqnedeLEl~egDii~VmeKcddgWf 468 (489)
T KOG4225|consen 391 DSMKNAWPQTHTQSSTQPPENFPQEPRVTEKNDAHSQTSSEPLKYRALYSY--RPQNEDELELREGDIIDVMEKCDDGWF 468 (489)
T ss_pred chhhhcccccccccccCCCCCcccccccccccCcccCCCCCcccceecccc--CCCCchhheeccCCEEeeeecccCcce
Confidence 000000 0000 000 012337999999 557777999999999999999999999
Q ss_pred EE--EeCCeeeEecCCcEEE
Q psy5076 244 EG--ELNGKTGHFPFTHVEF 261 (288)
Q Consensus 244 ~~--~~~~~~G~~P~~~v~~ 261 (288)
.| ++.|+.|.||-|||+.
T Consensus 469 vGts~rtg~fGtFPgnyV~~ 488 (489)
T KOG4225|consen 469 VGTSRRTGKFGTFPGNYVKR 488 (489)
T ss_pred eccceecccccccCcccccc
Confidence 99 7789999999999975
No 14
>KOG4348|consensus
Probab=99.75 E-value=3.5e-19 Score=157.22 Aligned_cols=150 Identities=28% Similarity=0.447 Sum_probs=112.1
Q ss_pred EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCCcccccccCCCC-------CCC
Q psy5076 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLD-------SSS 184 (288)
Q Consensus 112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~~~~~~~~~~~~-------~~~ 184 (288)
.+++.|||.++.++||.++.|++|+-+.+.+.|||.|. .+|+.|.||-|+|.+++.....+++.+-.+. +..
T Consensus 3 d~ive~dy~a~hddelti~vgeii~nvkk~e~gw~ege-lngrrg~fpdnfV~eik~e~k~d~l~nk~~r~~l~q~~s~n 81 (627)
T KOG4348|consen 3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLEEGWLEGE-LNGRRGQFPDNFVVEIKVEFKDDDLVNKLSRDSLVQMTSRN 81 (627)
T ss_pred ceeeecccccccCceeeEeHHHHHHhhhhhccceeece-eccccccCCchhhhhhhhhcccccccccccccchhhcccCC
Confidence 36788999999999999999999999998999999999 9999999999999887766443332211100 000
Q ss_pred CCCCCCC-CccccccccCCCCCeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076 185 HHVPQQQ-TTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263 (288)
Q Consensus 185 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~ 263 (288)
.-..+.+ ......+..+ .-.|+++|.|.+ +..+||.|..||+|.+++....|||.|.++|+.|+||+|||..+.
T Consensus 82 ~l~~~q~v~rtn~~~q~~---~r~c~v~f~Y~p--qndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~ 156 (627)
T KOG4348|consen 82 PLTVHQQVERTNPPPQPQ---ARICVVTFAYSP--QNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELP 156 (627)
T ss_pred CccccCcccccCCCCCcc---ceeEEEEEeecC--CCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecC
Confidence 0000000 0111111111 337899999965 666699999999999999999999999999999999999999986
Q ss_pred CCCC
Q psy5076 264 TNET 267 (288)
Q Consensus 264 ~~~~ 267 (288)
....
T Consensus 157 ~~sd 160 (627)
T KOG4348|consen 157 TPSD 160 (627)
T ss_pred CCCc
Confidence 6554
No 15
>KOG4278|consensus
Probab=99.71 E-value=2.1e-17 Score=153.08 Aligned_cols=104 Identities=29% Similarity=0.479 Sum_probs=91.8
Q ss_pred CCCCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcc
Q psy5076 2 TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKT 81 (288)
Q Consensus 2 ~~~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~ 81 (288)
+..+++++...||||.+||..||.+|...-. |.||||+|++.+|+|+||+|+++.|+||+|.....+ +.|...+..
T Consensus 143 ItPvNSLeKhsWYHGpvSRsaaEy~LsSgIn-GSFLVRESEsSpgQ~sISlRyeGRVyHYRINt~~dg---K~yvt~Esr 218 (1157)
T KOG4278|consen 143 ITPVNSLEKHSWYHGPVSRSAAEYILSSGIN-GSFLVRESESSPGQYSISLRYEGRVYHYRINTDNDG---KMYVTQESR 218 (1157)
T ss_pred cccccchhhcccccCccccchhhhhhhcCcc-cceEEeeccCCCcceeEEEEecceEEEEEeeccCCc---cEEEeehhh
Confidence 3467889999999999999999999987655 999999999999999999999999999999986655 535555789
Q ss_pred cCChhhhhhhheecccC-CCcccccccce
Q psy5076 82 FSDLPSLLAFYKVHYLD-TSPLIKPATKT 109 (288)
Q Consensus 82 F~sl~~LV~~y~~~~l~-~~~l~~p~~~~ 109 (288)
|.+|.|||.||.+..++ .|.|++|.+++
T Consensus 219 F~TLaELVHHHStvADGLittLhYPApK~ 247 (1157)
T KOG4278|consen 219 FRTLAELVHHHSTVADGLITTLHYPAPKK 247 (1157)
T ss_pred hhHHHHHHhhccccccceeEeeeccCccC
Confidence 99999999999999888 78899998874
No 16
>KOG1029|consensus
Probab=99.70 E-value=1.9e-17 Score=154.95 Aligned_cols=151 Identities=31% Similarity=0.498 Sum_probs=115.3
Q ss_pred eEEeeec-cCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCCcccccccCCCCCCCCCCCC
Q psy5076 111 EKVIAKY-DFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQ 189 (288)
Q Consensus 111 ~~~~a~~-~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (288)
+.+.+++ .+.+....+|.|..||.|.|++++ +.||.|+ .+++.|.||+||+......... ..|+
T Consensus 906 eq~ya~~~~~e~vEq~dlt~~egd~iLvtekd-geww~gt-~~~r~gifPan~y~r~~~q~gs-------------~Tp~ 970 (1118)
T KOG1029|consen 906 EQLYAVYPYFEAVEQGDLTFHEGDEILVTEKD-GEWWTGT-CGDREGIFPANYYVRPKDQEGS-------------GTPP 970 (1118)
T ss_pred ceeEEEecccccccCCCccccccceEEEeecc-Cceeccc-cCCccccccccceeeehhccCC-------------CCCC
Confidence 3444544 455688899999999999888865 5799999 9999999999966554432110 0000
Q ss_pred CCCccccccccCCCCCeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeC--C---eeeEecCCcEEEcCC
Q psy5076 190 QQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN--G---KTGHFPFTHVEFIPT 264 (288)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~--~---~~G~~P~~~v~~~~~ 264 (288)
......+.|+.++++-+| .|..++.|++..|++|.|.++...|||+|++. | +.||||.+||+.++.
T Consensus 971 -------k~g~~~kkpeiAqVia~y--vAs~peQLsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~ 1041 (1118)
T KOG1029|consen 971 -------KQGPTPKKPEIAQVIADY--VASGPEQLSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEP 1041 (1118)
T ss_pred -------CCCCCCCCchhhhhhhhh--hccCchhccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccC
Confidence 011111237789999999 67888899999999999999999999999763 3 569999999999876
Q ss_pred CC-----------------------CccCCCCCCccccCCCCCC
Q psy5076 265 NE-----------------------TSVETNGNGDIHNSTPKTE 285 (288)
Q Consensus 265 ~~-----------------------~~~~~~~~~~~~~~~~~~~ 285 (288)
.. +.+.+++++|||++.+|+.
T Consensus 1042 ~s~raTPa~~~v~qviamYdY~AqndDELsF~kgdiI~Vlnkde 1085 (1118)
T KOG1029|consen 1042 GSGRATPATRPVCQVIAMYDYEAQNDDELSFKKGDIINVLNKDE 1085 (1118)
T ss_pred CCCcCCCCCCccceeEEeeccccCCcccccccCCCEEEecCCCC
Confidence 62 4477899999999999875
No 17
>KOG4637|consensus
Probab=99.66 E-value=8.2e-17 Score=139.72 Aligned_cols=97 Identities=28% Similarity=0.545 Sum_probs=85.6
Q ss_pred CCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-CcccCC
Q psy5076 6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG-DKTFSD 84 (288)
Q Consensus 6 ~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~-~~~F~s 84 (288)
+.+..++||||.|||+++.+.|++.+. |+||||+-++..|+|+|+++.++.++-++|...++. |-|. .-.|.|
T Consensus 18 ~~L~~a~WYWgdisReev~~~L~d~PD-GsFlVRdAstm~GdYTLtl~k~g~~KLikI~h~DgK-----yGF~d~ltf~S 91 (464)
T KOG4637|consen 18 DELQDAEWYWGDISREEVNKKLRDQPD-GSFLVRDASTMQGDYTLTLRKGGNNKLIKIVHRDGK-----YGFSDPLTFNS 91 (464)
T ss_pred hhhhhccccccccCHHHHHHHhcCCCC-CcEEeeccccCCCceEEEEecCCccceeeeEEecCc-----cCCCCchhhHH
Confidence 347778999999999999999987755 999999988889999999999999999999998876 5555 569999
Q ss_pred hhhhhhhheecccC------CCcccccccc
Q psy5076 85 LPSLLAFYKVHYLD------TSPLIKPATK 108 (288)
Q Consensus 85 l~~LV~~y~~~~l~------~~~l~~p~~~ 108 (288)
+.+||+||++.+|. ...|++|+.+
T Consensus 92 VVelIn~yr~~SL~~yN~~LDvrLlyPVs~ 121 (464)
T KOG4637|consen 92 VVELINHYRNESLAQYNPKLDVRLLYPVSR 121 (464)
T ss_pred HHHHHHHHhhhHHHhhCcccceeeechHHH
Confidence 99999999999885 4678999876
No 18
>KOG0790|consensus
Probab=99.66 E-value=1.5e-16 Score=141.35 Aligned_cols=95 Identities=29% Similarity=0.601 Sum_probs=82.1
Q ss_pred CCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCC---------eEEEEEEEeecCCCcceEEeeC-
Q psy5076 9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENN---------KVSHYIINKITNTEQQTCYKIG- 78 (288)
Q Consensus 9 ~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~---------~v~h~~I~~~~~~~~~~~~~~~- 78 (288)
.++.||||.|+-.+||+||.++...|+||||.|.+.+|+|+|||+.+. +|.|..|...+.. |-++
T Consensus 108 tserWfHG~LsgkeAekLl~ekgk~gsfLvReSqs~PGdfVlSvrTdd~~~~~~~~~kVtHvmI~~q~~k-----ydVGg 182 (600)
T KOG0790|consen 108 TSERWFHGHLSGKEAEKLLQEKGKHGSFLVRESQSHPGDFVLSVRTDDKKESNDSKLKVTHVMIRCQEGK-----YDVGG 182 (600)
T ss_pred hhhhhhccCCCchhHHHHHHhcCCCccEEEeccccCCCceEEEEEcCCcccCCCCccceEEEEEEecccc-----cccCC
Confidence 346799999999999999977666699999999999999999999854 8999999998754 9997
Q ss_pred CcccCChhhhhhhheecccC-----CCcccccccc
Q psy5076 79 DKTFSDLPSLLAFYKVHYLD-----TSPLIKPATK 108 (288)
Q Consensus 79 ~~~F~sl~~LV~~y~~~~l~-----~~~l~~p~~~ 108 (288)
+..|+|+.+||+||+++|+- ...|.+|+..
T Consensus 183 ge~F~sltdLidhykknpmvEt~gtvv~LrqP~na 217 (600)
T KOG0790|consen 183 GERFDSLTDLVEHYKKNPMVETLGTVVYLRQPLNA 217 (600)
T ss_pred ccccchHHHHHHHhccCchhhhcceeEEeeccccc
Confidence 57999999999999999974 2457777664
No 19
>KOG0197|consensus
Probab=99.55 E-value=1e-14 Score=133.28 Aligned_cols=101 Identities=36% Similarity=0.636 Sum_probs=85.6
Q ss_pred CCCCCCCCCccccCCCHHHHHHHHc-CCCCCCeEEEEeCCCCCCceEEEEeeCC------eEEEEEEEeecCCCcceEEe
Q psy5076 4 TFDPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENN------KVSHYIINKITNTEQQTCYK 76 (288)
Q Consensus 4 ~~~~~~~~~Wy~g~isr~~ae~lL~-~~~~~G~FLvR~s~~~~~~~~lsv~~~~------~v~h~~I~~~~~~~~~~~~~ 76 (288)
.+.+++.++||||.|+|++||+.|. .....|+||||+|++..|.|+|||+... .|+||+|...+.+ . |+
T Consensus 74 ~~~~l~~~~Wf~~~isR~~ae~~ll~p~~~~G~flvR~se~~~g~yslsv~~~~~~~~~~~v~hyri~~~~~~---~-~~ 149 (468)
T KOG0197|consen 74 AFIKLSDEPWFFGKISREEAERQLLAPENKEGAFLVRESESDKGDYSLSVREGDSGGLGAKVKHYRIRQLDGG---G-LY 149 (468)
T ss_pred CccccccCCchhccccHHHHHHhhcCCCCCccceeeecccCCcCCeeEEEEeccccCCccceeeeeeeEcCCC---C-ee
Confidence 4578889999999999999996554 4455599999999999999999999866 8999999998765 2 44
Q ss_pred --eC-CcccCChhhhhhhheecccC-CCcccccccc
Q psy5076 77 --IG-DKTFSDLPSLLAFYKVHYLD-TSPLIKPATK 108 (288)
Q Consensus 77 --~~-~~~F~sl~~LV~~y~~~~l~-~~~l~~p~~~ 108 (288)
+. ...|.+|.+||+||+.+..+ +..|..||..
T Consensus 150 ~~~~~~~~F~~l~~lv~~~~~~~~gl~~~l~~p~~~ 185 (468)
T KOG0197|consen 150 PYIDERELFSSLQQLVNYYSKNADGLCTRLRDPCSK 185 (468)
T ss_pred cCCCHHHhhhhHHHHHhhhhccCcchhhcccCchhc
Confidence 65 57999999999999999988 7788888876
No 20
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.49 E-value=5.2e-14 Score=90.30 Aligned_cols=49 Identities=35% Similarity=0.529 Sum_probs=43.1
Q ss_pred EEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEE
Q psy5076 210 VKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260 (288)
Q Consensus 210 ~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~ 260 (288)
|+|+| .+..++||+|.+||+|.|+++.+++||.++.+|+.|+||++||+
T Consensus 1 Al~~y--~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDY--EAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp ESSCB--CSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred CCccC--CCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence 68899 56777799999999999999999999999999999999999996
No 21
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.40 E-value=6.6e-13 Score=87.55 Aligned_cols=54 Identities=37% Similarity=0.545 Sum_probs=47.1
Q ss_pred EEEEEEcccCCCCCCCeeeecCCCEEEEE-EeCCCCeeEEEeCCeeeEecCCcEEEc
Q psy5076 207 FARVKQVRVPNAYDKTALKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVEFI 262 (288)
Q Consensus 207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~-~~~~~~w~~~~~~~~~G~~P~~~v~~~ 262 (288)
+++|++|| .+..+++|+|.+||+|.|+ ++.+++||.++.+|+.||||.+||+++
T Consensus 1 ~~~a~~d~--~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 1 YYRAIFDY--VAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI 55 (55)
T ss_dssp EEEESSSB--ESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred CEEEeEEE--CCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence 57899999 5577889999999999999 888899999999999999999999874
No 22
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.37 E-value=1.1e-12 Score=84.10 Aligned_cols=49 Identities=43% Similarity=1.011 Sum_probs=44.3
Q ss_pred eeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeE
Q psy5076 115 AKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164 (288)
Q Consensus 115 a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~ 164 (288)
|+++|.++..+||+|++||+|.|+.+.+++||.+++ +|+.|+||++||+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~-~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRN-TGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEE-TTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEE-CCEEEEECHHhCC
Confidence 689999999999999999999999998999999995 9999999999985
No 23
>KOG4637|consensus
Probab=99.35 E-value=7.7e-13 Score=115.22 Aligned_cols=96 Identities=27% Similarity=0.514 Sum_probs=79.1
Q ss_pred CCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCC--ccc
Q psy5076 5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGD--KTF 82 (288)
Q Consensus 5 ~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~--~~F 82 (288)
..++...-|+.+.+-|..||.||+..+. |+||||.|+. .|+|+|||..++.|+||.|.++..| |-|.. ..+
T Consensus 326 ~ph~~e~~w~~~~a~r~kAe~llrg~~d-GtFLIR~ss~-~g~yalSV~~~~~V~HClIy~tatG-----~GFa~pyn~y 398 (464)
T KOG4637|consen 326 LPHNDEKTWRVRDANRDKAEELLRGKPD-GTFLIRESSK-GGCYALSVVHDGEVKHCLIYQTATG-----FGFAEPYNLY 398 (464)
T ss_pred CcchhhhHhHHhhhhHHHHHHHhcCCCC-CeEEEeeccC-CCceEEEEEECCceeeeEEeecccc-----ccccchhHHH
Confidence 3344445799999999999999977655 9999999664 8999999999999999999998887 77764 478
Q ss_pred CChhhhhhhheecccC------CCccccccc
Q psy5076 83 SDLPSLLAFYKVHYLD------TSPLIKPAT 107 (288)
Q Consensus 83 ~sl~~LV~~y~~~~l~------~~~l~~p~~ 107 (288)
.||.+||.||+..+|. .+.|.+|+-
T Consensus 399 ~tlk~lV~hY~h~SLe~HnDal~ttLr~Pv~ 429 (464)
T KOG4637|consen 399 STLKELVLHYQHTSLEQHNDALTTTLRYPVF 429 (464)
T ss_pred HHHHHHHHHHhhhhHHhhcccccccccccee
Confidence 9999999999999885 345555543
No 24
>KOG1930|consensus
Probab=99.35 E-value=8e-13 Score=116.85 Aligned_cols=98 Identities=28% Similarity=0.489 Sum_probs=82.7
Q ss_pred CCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEee----------C-----CeEEEEEEEeecC
Q psy5076 4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE----------N-----NKVSHYIINKITN 68 (288)
Q Consensus 4 ~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~----------~-----~~v~h~~I~~~~~ 68 (288)
+|....+.-||.-+|+|++|..||+++.+ |+||||+|.+..|.|-|.++. + .-|+||.|+....
T Consensus 205 kFV~DTSKyWYKP~isREQAIalLrdkeP-GtFvvRDS~SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~spk 283 (483)
T KOG1930|consen 205 LFVKDTSKYWYKPNISREQAIALLRDKEP-GTFVVRDSHSFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEPSPK 283 (483)
T ss_pred eeeecccccccCCCCCHHHHHHHhhcCCC-CeEEEecCCcCCCccceEEEeccCCCcccCCCCCchhhhhhhheeccCCC
Confidence 45667788999999999999999999988 999999999999999999994 1 3489999998776
Q ss_pred CCcceEEeeC----CcccCChhhhhhhheecccC-CCccccccc
Q psy5076 69 TEQQTCYKIG----DKTFSDLPSLLAFYKVHYLD-TSPLIKPAT 107 (288)
Q Consensus 69 ~~~~~~~~~~----~~~F~sl~~LV~~y~~~~l~-~~~l~~p~~ 107 (288)
| ..+. +..|.||..||..|...+|. .|+|..|-.
T Consensus 284 G-----VkLKGC~nEP~FGSLSALV~QHSIt~LALPckL~iP~r 322 (483)
T KOG1930|consen 284 G-----VKLKGCDNEPVFGSLSALVYQHSITALALPCKLVIPDR 322 (483)
T ss_pred c-----eeccCCCCCCccchhHHHHhhccchhhhcceeEeccCC
Confidence 6 6664 46999999999999888876 666665533
No 25
>KOG2070|consensus
Probab=99.29 E-value=2.3e-12 Score=116.14 Aligned_cols=61 Identities=36% Similarity=0.592 Sum_probs=56.2
Q ss_pred CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCC
Q psy5076 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET 267 (288)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~ 267 (288)
|..++|.|.| .....+||+|.+||+|.|....++|||+|.++|++||||+|||..+..+.+
T Consensus 17 pLvvrAkf~F--~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik~e~p 77 (661)
T KOG2070|consen 17 PLVVRAKFNF--QGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIKSEKP 77 (661)
T ss_pred ceEEEEEeec--ccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHhhcCC
Confidence 7789999999 567777999999999999999999999999999999999999999986655
No 26
>KOG2996|consensus
Probab=99.26 E-value=7.6e-12 Score=114.83 Aligned_cols=57 Identities=33% Similarity=0.438 Sum_probs=47.8
Q ss_pred EEEEEEcccCCCCCCCeeeecCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076 207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFIP 263 (288)
Q Consensus 207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~--~~~w~~~~~~~~~G~~P~~~v~~~~ 263 (288)
+..|+.+|+.-+.+..||||++||+|.+..+. |.|||.|+.+|+.||||++||++-.
T Consensus 805 ~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~~ 863 (865)
T KOG2996|consen 805 VGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEEDD 863 (865)
T ss_pred eeeeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCcccccccccccccC
Confidence 44555555547888889999999999999876 5799999999999999999998754
No 27
>KOG0194|consensus
Probab=99.23 E-value=3.1e-11 Score=111.92 Aligned_cols=90 Identities=31% Similarity=0.611 Sum_probs=75.4
Q ss_pred CCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCc---e-EEEEeeC--CeEEEEEEEeecCCCcceEEeeC-CcccC
Q psy5076 11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGN---Y-VLCVKEN--NKVSHYIINKITNTEQQTCYKIG-DKTFS 83 (288)
Q Consensus 11 ~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~---~-~lsv~~~--~~v~h~~I~~~~~~~~~~~~~~~-~~~F~ 83 (288)
++||||.|.|++++.+|.. +|+||||.+....+. + +|||... .+++||.|....+. |++. ...|+
T Consensus 49 ~~~yHG~l~red~~~lL~~---~GDfLvR~s~~~~~~~~~~~vlSv~~~~~~~~~h~vi~~~~~~-----~~~~~~~~F~ 120 (474)
T KOG0194|consen 49 LPYYHGLLPREDAEKLLKN---DGDFLVRASEPKEGEKREFVVLSVKWSVFKKIKHYVIKRNGNL-----FFFEGLRKFP 120 (474)
T ss_pred CccccccccHhHHHHHhCC---CCceEEEeecccCCcceeEEEEEEEeecCCceeEEEEEEcCCe-----eEEeccccCC
Confidence 6999999999999999984 399999999865543 3 9999985 89999999987664 5544 68999
Q ss_pred ChhhhhhhheecccC----CCcccccccc
Q psy5076 84 DLPSLLAFYKVHYLD----TSPLIKPATK 108 (288)
Q Consensus 84 sl~~LV~~y~~~~l~----~~~l~~p~~~ 108 (288)
++.+||.||..+.+. ...|+.|+++
T Consensus 121 si~~li~~~~~~~~~~~~~~~~L~~PI~r 149 (474)
T KOG0194|consen 121 TISELVNYYKFSKLEITGKNFFLKRPIPR 149 (474)
T ss_pred cHHHHHHHHHhcccceeccceeecccccc
Confidence 999999999998875 3458888887
No 28
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.22 E-value=2.7e-11 Score=79.77 Aligned_cols=53 Identities=40% Similarity=0.852 Sum_probs=47.1
Q ss_pred EEeeeccCCCCCCCCCCCCCCCEEEEE-EecCCCeEEEEeCCCcEEEEeCCCeEe
Q psy5076 112 KVIAKYDFDGNDPDDLPFKKNDILIVV-SKDEEHWWTAQNISGEVGSIPVPYVQK 165 (288)
Q Consensus 112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl-~~~~~~ww~~~~~~g~~G~vP~~~v~~ 165 (288)
+++|+++|.+..+++|+|++||+|.|+ +...++||.++. +|+.||||.+||++
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~-~g~~G~~P~~~v~~ 54 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGEN-NGRRGWFPSSYVEE 54 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEE-TTEEEEEEGGGEEE
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEE-CCcEEEEcHHHEEE
Confidence 478999999999999999999999999 777789999996 99999999999986
No 29
>KOG3632|consensus
Probab=99.14 E-value=9.1e-11 Score=113.22 Aligned_cols=157 Identities=22% Similarity=0.307 Sum_probs=104.0
Q ss_pred eeEEeeeccCCCC--------CCCCCCCCCCCEEEEEEe-cCCCeEEEEeCCCcEEEEeCCCeEecccCCccc--ccccC
Q psy5076 110 IEKVIAKYDFDGN--------DPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQKYSEGMSIL--SLRNL 178 (288)
Q Consensus 110 ~~~~~a~~~~~~~--------~~~eLs~~~g~~i~vl~~-~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~~~~--~~~~~ 178 (288)
...++|+|||.+- ...||.|++|++|.|+.. +.+|++.|+ .+++.|+||.|+|.++.-+.... -..++
T Consensus 1138 arifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE-~ngr~GlIPcNmvae~~vd~eq~~~r~rqG 1216 (1335)
T KOG3632|consen 1138 ARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGE-LNGRRGLIPCNMVAEQPVDNEQTDRRWRQG 1216 (1335)
T ss_pred ceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecc-cccccccccccccccccCCcHHHHHHHHhc
Confidence 5678999999863 457899999999999874 567899999 99999999999998876553100 01100
Q ss_pred C-CC-CCCCCCCCCCCccccccccCCCCCeEEEEEEcccCCCCCCC-----eeeecCCCEEEEEEeC-CCCeeEEEeCCe
Q psy5076 179 H-LD-SSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKT-----ALKLEIGDIIKVTKTN-INGQWEGELNGK 250 (288)
Q Consensus 179 ~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----eLs~~~g~~v~v~~~~-~~~w~~~~~~~~ 250 (288)
. |. ..-...-++.-.... ..+....+....+.+||+++...++ +|.|..||+|.|..+. ++|++.|+++|+
T Consensus 1217 ~lPsv~~~e~~~gs~~s~g~-~k~vp~~p~~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGelngq 1295 (1335)
T KOG3632|consen 1217 LLPSVPTEEMRKGSAFSDGQ-QKMVPWPPRQMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGELNGQ 1295 (1335)
T ss_pred cCCCCCchhhhcccccCCCC-ccccCCchhhhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCcccccccCCc
Confidence 0 00 000000000000000 0000001224677899987654433 8999999999999876 468889999999
Q ss_pred eeEecCCcEEEcCCCCCc
Q psy5076 251 TGHFPFTHVEFIPTNETS 268 (288)
Q Consensus 251 ~G~~P~~~v~~~~~~~~~ 268 (288)
.|++|++|++....+...
T Consensus 1296 kglvpsnfle~p~~e~~~ 1313 (1335)
T KOG3632|consen 1296 KGLVPSNFLEAPNAEKTS 1313 (1335)
T ss_pred cCccccccccCCCccccc
Confidence 999999999988555543
No 30
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.12 E-value=1.1e-10 Score=74.52 Aligned_cols=46 Identities=33% Similarity=0.465 Sum_probs=40.3
Q ss_pred EEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeC--CeeeEecC
Q psy5076 209 RVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN--GKTGHFPF 256 (288)
Q Consensus 209 ~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~--~~~G~~P~ 256 (288)
+|+|+| .+..++||+|++||.|.|+++.+++||.++.. ++.||||+
T Consensus 1 ~Alydf--~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDF--DAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCB--ETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeee--CCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 589999 56778899999999999999999999999885 69999995
No 31
>KOG0790|consensus
Probab=99.11 E-value=8.9e-11 Score=105.02 Aligned_cols=92 Identities=27% Similarity=0.513 Sum_probs=79.2
Q ss_pred CCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEee-CCcccCChhhh
Q psy5076 10 RNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKI-GDKTFSDLPSL 88 (288)
Q Consensus 10 ~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~-~~~~F~sl~~L 88 (288)
+..|||..|+-.+||.||+....||.||.|.|.+.+|.|+|+++.+++|.|++|...+.. |.+ ++..|.++.||
T Consensus 3 s~~wfh~~~~g~~ae~Ll~~~g~dgsfl~r~s~sNp~~fsl~~r~~~~v~hikiq~~~~~-----~~l~~gekfat~~EL 77 (600)
T KOG0790|consen 3 SRRWFHPDLSGVEAETLLKERGVDGSFLARPSESNPGDFSLSVRRGDKVTHIKIQNSGDF-----YDLYGGEKFATLAEL 77 (600)
T ss_pred chhhcCCCccchhHHHHHHHhccccchhhccccCCCcceeEEEEeCCceEEEEEeecCcc-----ccccCCccccchHHH
Confidence 568999999999999999998888999999999999999999999999999999876543 555 47899999999
Q ss_pred hhhheecccC-------CCcccccc
Q psy5076 89 LAFYKVHYLD-------TSPLIKPA 106 (288)
Q Consensus 89 V~~y~~~~l~-------~~~l~~p~ 106 (288)
|+||+.+.-. ...|++|+
T Consensus 78 vqyyme~~~~lkekng~~ielK~pl 102 (600)
T KOG0790|consen 78 VQYYMEHHGQLKEKNGDVIELKYPL 102 (600)
T ss_pred HHHHHhhhHHHHhcCCCEEEecCCC
Confidence 9999998721 23566664
No 32
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.07 E-value=4e-10 Score=74.38 Aligned_cols=55 Identities=38% Similarity=0.537 Sum_probs=48.8
Q ss_pred eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeC-CeeeEecCCcEEEc
Q psy5076 206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN-GKTGHFPFTHVEFI 262 (288)
Q Consensus 206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~-~~~G~~P~~~v~~~ 262 (288)
.+++|+++|. +..+++|+|.+||.|.+++..+++||.++.. ++.||||.+|++.+
T Consensus 3 ~~~~a~~~~~--~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~~ 58 (58)
T smart00326 3 PQVRALYDYT--AQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEEI 58 (58)
T ss_pred cEEEEeeeeC--CCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEEC
Confidence 3689999995 5677799999999999999989999999887 89999999999864
No 33
>KOG3601|consensus
Probab=99.07 E-value=1.1e-10 Score=94.98 Aligned_cols=179 Identities=16% Similarity=0.070 Sum_probs=117.6
Q ss_pred cCChhhhhhhheecccC--CCccc-ccccceeeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEE
Q psy5076 82 FSDLPSLLAFYKVHYLD--TSPLI-KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI 158 (288)
Q Consensus 82 F~sl~~LV~~y~~~~l~--~~~l~-~p~~~~~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~v 158 (288)
=.++.|.|..|...-.+ ...-. .+--+..+.+.+.+++.......+..+.|+.+..+.+..++|..+. .+...|.+
T Consensus 27 ~l~~~d~~nw~~ael~g~~g~~P~Nai~~~~~~wve~~i~r~~ae~~l~~~~~G~fl~r~s~sSPg~fsgs-vr~~d~vq 105 (222)
T KOG3601|consen 27 ILNMEDDINWYKAELDGPEGFIPKNAIRMKPHEWVEGLIPRPLAEDLLSKKRDGDFLIRLSESSPGDFSGS-VRFPDGVQ 105 (222)
T ss_pred ecchHHhhhhhhHhhcCccccCcccccccccccceecccccchhhhhhhccCcchhhhhhhhcCccccccc-ccCCCCce
Confidence 34566777777654333 11111 1111224567788888888888888899999999998999999998 88899999
Q ss_pred eCCCeEecccCCcccc--cccCCCCCCCCCCC-CCCCccccccccCC--------CCCeEEEEEEcccCCCCCCCeeeec
Q psy5076 159 PVPYVQKYSEGMSILS--LRNLHLDSSSHHVP-QQQTTPVRKTHLEV--------KLPAFARVKQVRVPNAYDKTALKLE 227 (288)
Q Consensus 159 P~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~eLs~~ 227 (288)
+.++|.+......-.. ..+.+|-..-.... ......+.+..... ....|.+++|+| +.+.+.+|.|.
T Consensus 106 hfkvvrpa~~k~~lw~skfnslnplv~Y~rt~s~~r~~qi~l~d~~~~~~~~~~~~~~~yqQa~~df--~~~pp~ql~f~ 183 (222)
T KOG3601|consen 106 HFKVVRPAFGKYFLWSSKFNSLNPLVSYHRTASQSRNQQIFLRDMEPPPAPLPPAPTNYYQQALYDF--QPQPPGQLAFR 183 (222)
T ss_pred eccccccCccccccchhhccCCCCCcccCcccccccceeeeecccccccccCCCCccchhhhhcCCC--CCCCchhhccc
Confidence 9999976554422111 11111111111000 00111111111110 013478999999 56888899999
Q ss_pred CCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076 228 IGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263 (288)
Q Consensus 228 ~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~ 263 (288)
+||++.|+...+.-||.|++.|+.|+||++|+....
T Consensus 184 ~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p~d 219 (222)
T KOG3601|consen 184 RGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAPSD 219 (222)
T ss_pred cCCcceeecCCCcchhhccccCceeeecCccccccc
Confidence 999999999999999999999999999999997654
No 34
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.05 E-value=3.7e-10 Score=72.12 Aligned_cols=47 Identities=49% Similarity=0.961 Sum_probs=42.5
Q ss_pred eeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCC-CcEEEEeC
Q psy5076 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPV 160 (288)
Q Consensus 114 ~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~-g~~G~vP~ 160 (288)
+|+|+|.+...++|+|++||.|.|+++.+++||.+++.. ++.|+||+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 589999999999999999999999999999999999755 79999995
No 35
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=99.02 E-value=6.5e-10 Score=72.33 Aligned_cols=51 Identities=41% Similarity=0.607 Sum_probs=45.4
Q ss_pred EEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCC-eeeEecCCcEE
Q psy5076 208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNG-KTGHFPFTHVE 260 (288)
Q Consensus 208 ~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~-~~G~~P~~~v~ 260 (288)
++++++| .+..+++|+|.+||.|.+++..++|||.++..+ +.||||..||+
T Consensus 2 ~~a~~~~--~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDY--DARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEee--CCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence 6789999 456667999999999999999889999998866 99999999985
No 36
>KOG2199|consensus
Probab=99.01 E-value=6.3e-11 Score=104.48 Aligned_cols=55 Identities=27% Similarity=0.315 Sum_probs=51.7
Q ss_pred EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076 207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263 (288)
Q Consensus 207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~ 263 (288)
.+|||||| .+.+.+||+|.+||+|.|++..+..||.|.+.+..|+||+|||...-
T Consensus 217 kVRALYDF--eAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 217 KVRALYDF--EAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTADL 271 (462)
T ss_pred hhhhhhcc--cccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhhh
Confidence 59999999 78888999999999999999999999999999999999999998765
No 37
>KOG2070|consensus
Probab=98.97 E-value=2.1e-10 Score=103.70 Aligned_cols=57 Identities=33% Similarity=0.746 Sum_probs=53.2
Q ss_pred eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168 (288)
Q Consensus 111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~ 168 (288)
-.++|.|.|.+.+.+||+|.+||+|.|.+..++|||.|. .+|++||||++||.+++.
T Consensus 18 LvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGT-lng~TGWFPsnYV~eik~ 74 (661)
T KOG2070|consen 18 LVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGT-LNGRTGWFPSNYVREIKS 74 (661)
T ss_pred eEEEEEeecccCCCceeccccCCEEEEEEeccCcceecc-ccCccCccchHHHHHHhh
Confidence 357899999999999999999999999999999999999 999999999999988763
No 38
>KOG1118|consensus
Probab=98.94 E-value=8e-10 Score=94.54 Aligned_cols=59 Identities=27% Similarity=0.397 Sum_probs=52.9
Q ss_pred CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCC
Q psy5076 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN 265 (288)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~ 265 (288)
...|+++|||.| +..+||.|.+||+|.++...|.+||+|...|.+|+||.|||+.+.+-
T Consensus 306 ~p~cralYdFep--enEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vlvpl 364 (366)
T KOG1118|consen 306 QPCCRALYDFEP--ENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVLVPL 364 (366)
T ss_pred chhheeeeccCC--CCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEeccC
Confidence 347999999965 66669999999999999999999999999999999999999988653
No 39
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=98.92 E-value=4.4e-09 Score=69.29 Aligned_cols=55 Identities=40% Similarity=0.830 Sum_probs=50.0
Q ss_pred eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEe
Q psy5076 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165 (288)
Q Consensus 111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~ 165 (288)
..++++++|.+...++|+|++||.|.++....++||.+++.+++.||||.+|++.
T Consensus 3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~ 57 (58)
T smart00326 3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEE 57 (58)
T ss_pred cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEE
Confidence 4578999999999999999999999999988899999996659999999999875
No 40
>KOG0162|consensus
Probab=98.91 E-value=1.6e-09 Score=102.07 Aligned_cols=55 Identities=31% Similarity=0.466 Sum_probs=51.1
Q ss_pred eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEc
Q psy5076 206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262 (288)
Q Consensus 206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~ 262 (288)
..++|+|+| .+++.+||+|.+||+|.++.+...|||.|+.+|+.||||.+||+++
T Consensus 1052 p~~~A~Y~y--~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1052 PVCEALYDY--PGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTEY 1106 (1106)
T ss_pred cceeeeccC--CCCCcccccccCCCEEEEeccCCCcchhhccCCccccccccccccC
Confidence 479999999 5678899999999999999999999999999999999999999763
No 41
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=98.89 E-value=5.5e-09 Score=67.88 Aligned_cols=52 Identities=44% Similarity=0.926 Sum_probs=47.3
Q ss_pred EeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeE
Q psy5076 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164 (288)
Q Consensus 113 ~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~ 164 (288)
+.++++|.+...++|+|.+||.+.++....++||.+++..++.||||.+|++
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence 5789999999999999999999999998788999999665699999999985
No 42
>KOG4225|consensus
Probab=98.89 E-value=1.6e-09 Score=96.73 Aligned_cols=56 Identities=29% Similarity=0.395 Sum_probs=53.2
Q ss_pred EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCC
Q psy5076 207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 264 (288)
Q Consensus 207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~ 264 (288)
.++|+|+| .++...||.|.+||+|.|+++.|..|++|..+|+.|+||++||+++..
T Consensus 232 ~aralf~F--~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~ 287 (489)
T KOG4225|consen 232 AARALFDF--EAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTP 287 (489)
T ss_pred hhhheecc--ccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCc
Confidence 38999999 678888999999999999999999999999999999999999999987
No 43
>KOG2199|consensus
Probab=98.85 E-value=6.3e-10 Score=98.26 Aligned_cols=56 Identities=30% Similarity=0.705 Sum_probs=51.9
Q ss_pred eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166 (288)
Q Consensus 110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~ 166 (288)
...++|+|||++...+||+|++||+|.|++..+.+||.|. ..+..|+||+|||...
T Consensus 215 ~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~-~~~~~GlFPsnfVT~~ 270 (462)
T KOG2199|consen 215 VRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGE-NHRGIGLFPSNFVTAD 270 (462)
T ss_pred chhhhhhhcccccCCCccceecCcEEEEcccCCcchhccc-cCCcccccchhhhhhh
Confidence 4579999999999999999999999999999999999999 7789999999999753
No 44
>KOG1118|consensus
Probab=98.59 E-value=2.2e-08 Score=85.86 Aligned_cols=58 Identities=29% Similarity=0.602 Sum_probs=53.4
Q ss_pred eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168 (288)
Q Consensus 110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~ 168 (288)
...|+|+|+|++.+.+||.|+.||+|.++..-+.+||.|. ..|..|+||.|||+.+-+
T Consensus 306 ~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~-~~g~sG~FPvnYv~vlvp 363 (366)
T KOG1118|consen 306 QPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGE-KHGESGMFPVNYVEVLVP 363 (366)
T ss_pred chhheeeeccCCCCCCccCcccCceeeehhhcCcchhhhe-ecCccCccccceeEEecc
Confidence 3457899999999999999999999999999999999999 888999999999998754
No 45
>KOG2546|consensus
Probab=98.55 E-value=2.7e-08 Score=88.72 Aligned_cols=55 Identities=31% Similarity=0.314 Sum_probs=50.4
Q ss_pred EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcC
Q psy5076 207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263 (288)
Q Consensus 207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~ 263 (288)
.+.++||| .+...+||+|.+|.+|.|+++.++|||+|-.++.+|+||-|||+.+.
T Consensus 425 kVv~iydy--~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~ 479 (483)
T KOG2546|consen 425 KVVAIYDY--TADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLK 479 (483)
T ss_pred HHHhhccc--ccccccccccccccEEEEEEecCCcchhheecCcceeccCccccccc
Confidence 36789999 56777799999999999999999999999999999999999998874
No 46
>KOG3751|consensus
Probab=98.54 E-value=3.7e-08 Score=90.05 Aligned_cols=91 Identities=29% Similarity=0.520 Sum_probs=76.4
Q ss_pred CCCCCCCCccccCCCHHHHHHHHcC-CCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC--Ccc
Q psy5076 5 FDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG--DKT 81 (288)
Q Consensus 5 ~~~~~~~~Wy~g~isr~~ae~lL~~-~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~--~~~ 81 (288)
+..|.++.||||.|+|+++..++++ +-.+|.||+|+|.+.+..|++++.+..+|+||+|.-.+...... |... ...
T Consensus 513 ~~~h~sq~~~~~kis~~es~~~ikq~glv~~~~l~r~sqsnP~~~~~~~~~~~~v~~~~~~P~~~~~~~~-~t~~~g~t~ 591 (622)
T KOG3751|consen 513 QAIHRSQTWFHGKISRDESQRLIKQQGLVDGLFLVRDSQSNPKIFVLSLCHPQKVKHFQILPVEDDGCTF-FTLDDGPTK 591 (622)
T ss_pred hhhcccccCcccccCchhhhhHHHhcccceeeeeecccccCcchhhhhccCCccccceEEecCCCCCcee-eccCCCCcc
Confidence 5578899999999999999998876 67889999999999999999999999999999999866542222 3333 368
Q ss_pred cCChhhhhhhheecc
Q psy5076 82 FSDLPSLLAFYKVHY 96 (288)
Q Consensus 82 F~sl~~LV~~y~~~~ 96 (288)
|.++..||++|+-+.
T Consensus 592 ~sd~~ql~~~~ql~k 606 (622)
T KOG3751|consen 592 FSDLIQLVEFYQLNK 606 (622)
T ss_pred ccccccccchhhcCC
Confidence 999999999998764
No 47
>KOG2856|consensus
Probab=98.51 E-value=2.2e-08 Score=87.74 Aligned_cols=55 Identities=24% Similarity=0.359 Sum_probs=47.8
Q ss_pred eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC-CCeeEEEeC-CeeeEecCCcEEEc
Q psy5076 206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGELN-GKTGHFPFTHVEFI 262 (288)
Q Consensus 206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~-~~w~~~~~~-~~~G~~P~~~v~~~ 262 (288)
..++|||||. .++.+||+|++||.+..++..| .||+.|+++ |+.|++|+|||+.+
T Consensus 415 v~vraLYDY~--gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYA--GQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccC--cccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence 3589999995 4667799999999999987766 589899998 99999999999875
No 48
>KOG0162|consensus
Probab=98.51 E-value=6.7e-08 Score=91.48 Aligned_cols=54 Identities=37% Similarity=0.775 Sum_probs=51.4
Q ss_pred eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEe
Q psy5076 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165 (288)
Q Consensus 111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~ 165 (288)
+.+.|+|+|.+++.+||+|++|++|.++.++-.|||.|+ .+|+.||||.+||.+
T Consensus 1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk-~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGK-LNGKEGLFPGNYVTE 1105 (1106)
T ss_pred cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhc-cCCcccccccccccc
Confidence 568999999999999999999999999999999999999 999999999999975
No 49
>KOG4792|consensus
Probab=98.37 E-value=1.5e-07 Score=77.43 Aligned_cols=61 Identities=20% Similarity=0.331 Sum_probs=52.6
Q ss_pred CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCcEEEcCCCCC
Q psy5076 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFIPTNET 267 (288)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~~~~~~ 267 (288)
..+++++|||. ..+..+|-|++||++.+++|....||..+. .|+.|.+|..||+......+
T Consensus 124 ~~~vr~~fdF~--G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~~ 185 (293)
T KOG4792|consen 124 AEYVRALFDFN--GNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPASA 185 (293)
T ss_pred hhheeeeeccC--CCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhhc
Confidence 45899999994 566669999999999999999999997655 58999999999999876663
No 50
>KOG2856|consensus
Probab=98.21 E-value=3.2e-07 Score=80.57 Aligned_cols=56 Identities=36% Similarity=0.609 Sum_probs=48.8
Q ss_pred eEEeeeccCCCCCCCCCCCCCCCEEEEEEec-CCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQKY 166 (288)
Q Consensus 111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~-~~~ww~~~~~~g~~G~vP~~~v~~~ 166 (288)
..++|+|||.++..+||+|++||.+..+... +-||..|+...|+.|++|+|||+-+
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence 4689999999999999999999999887754 5699999955599999999999754
No 51
>KOG2546|consensus
Probab=98.13 E-value=1.2e-06 Score=78.46 Aligned_cols=56 Identities=32% Similarity=0.676 Sum_probs=52.5
Q ss_pred EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168 (288)
Q Consensus 112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~ 168 (288)
.++++|+|.+...+||+|..|-+|.|+.+.+++||.|. .++.+|+||.|||+.+..
T Consensus 425 kVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV-~~~VTglFpgnyve~~~~ 480 (483)
T KOG2546|consen 425 KVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGV-QDGVTGLFPGNYVEPLKA 480 (483)
T ss_pred HHHhhcccccccccccccccccEEEEEEecCCcchhhe-ecCcceeccCcccccccc
Confidence 47899999999999999999999999999999999999 899999999999988754
No 52
>KOG0515|consensus
Probab=98.11 E-value=1.2e-06 Score=80.53 Aligned_cols=57 Identities=33% Similarity=0.729 Sum_probs=50.3
Q ss_pred eEEeeeccCCCCCCCCCCCCCCCEEEEEEecC---CCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE---EHWWTAQNISGEVGSIPVPYVQKYSE 168 (288)
Q Consensus 111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~---~~ww~~~~~~g~~G~vP~~~v~~~~~ 168 (288)
..+.|++||+++..+||+|+.||.++|+++++ .+||.++ .+|+.|+||.||+-.+..
T Consensus 684 G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~-lng~eGyVPRnylgLyPr 743 (752)
T KOG0515|consen 684 GVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWAR-LNGEEGYVPRNYLGLYPR 743 (752)
T ss_pred ceeEEeecccccccccccccCCceeEEEecCCcchhhhhhHh-hcCcccccchhhhhcCcc
Confidence 45789999999999999999999999999854 4799998 899999999999865543
No 53
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=98.10 E-value=2.9e-05 Score=65.37 Aligned_cols=81 Identities=16% Similarity=0.220 Sum_probs=61.9
Q ss_pred CccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEee-CCeEEEEEEEeecCCC---cceEEeeCCcccCChhh
Q psy5076 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE-NNKVSHYIINKITNTE---QQTCYKIGDKTFSDLPS 87 (288)
Q Consensus 12 ~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~-~~~v~h~~I~~~~~~~---~~~~~~~~~~~F~sl~~ 87 (288)
|-|+ +++-.+|+++|..... |.+|||+|+......+++++. ++...|+-|...+..+ .+..+.|++..|.+|.|
T Consensus 39 P~F~-n~~~~qAe~~L~~~~~-Ge~iIRPSSkG~dhL~vTwKv~d~vyqHidV~E~~K~n~~slG~~L~i~~~~yeDLDE 116 (220)
T PF14633_consen 39 PLFK-NFNYKQAEEYLADQDV-GEVIIRPSSKGPDHLTVTWKVADGVYQHIDVKEEDKENEFSLGKTLKIGGEEYEDLDE 116 (220)
T ss_dssp TTEE-SS-HHHHHHHHCCS-T-T-EEEEE-TTTTTEEEEEEEEETTEEEEEEEEEECSSSTTS-SSEEEETTEEESSHHH
T ss_pred CCcc-CCCHHHHHHHHhcCCC-CCEEEeeCCCCCCeEEEEEEEcCCcEEEEEEEECCCcCccccCcEEEECCeEECCHHH
Confidence 5566 9999999999998777 999999999877778999996 5666799998765322 22337788899999999
Q ss_pred hhhhhee
Q psy5076 88 LLAFYKV 94 (288)
Q Consensus 88 LV~~y~~ 94 (288)
||..|-.
T Consensus 117 ii~r~V~ 123 (220)
T PF14633_consen 117 IIARHVE 123 (220)
T ss_dssp HHHHCHH
T ss_pred HHHHHHH
Confidence 9998865
No 54
>KOG3655|consensus
Probab=98.08 E-value=9.3e-07 Score=80.35 Aligned_cols=56 Identities=32% Similarity=0.481 Sum_probs=50.0
Q ss_pred CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCcEEEc
Q psy5076 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFI 262 (288)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~ 262 (288)
+..++|+||| +|-+..||+|..+++|.++...+.|||.|.. .|..|+||+|||+.+
T Consensus 427 ~q~A~A~~dy--qAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 427 PQTARALYDY--QAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred CCCccccccc--cccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence 3468899999 7788889999999999999999999999887 478999999999876
No 55
>KOG3875|consensus
Probab=98.04 E-value=5.8e-07 Score=77.34 Aligned_cols=59 Identities=25% Similarity=0.340 Sum_probs=48.5
Q ss_pred eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC-----CCeeEE-Ee-CCeeeEecCCcEEEcCCCC
Q psy5076 206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-----NGQWEG-EL-NGKTGHFPFTHVEFIPTNE 266 (288)
Q Consensus 206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~-----~~w~~~-~~-~~~~G~~P~~~v~~~~~~~ 266 (288)
.+++|+||| .+.++.||+|++||.+.|..|.+ +.||.. .. ++..||||.|||+++..+.
T Consensus 269 ~~arA~YdF--~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~rq~ 334 (362)
T KOG3875|consen 269 EFARALYDF--VARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGRQP 334 (362)
T ss_pred HHHHHHhhh--hcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhcCC
Confidence 478999999 67888899999999999988753 467754 44 5789999999999997733
No 56
>KOG3697|consensus
Probab=98.01 E-value=6.4e-06 Score=70.29 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=71.2
Q ss_pred CCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCC----------------------------------------------
Q psy5076 9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSN---------------------------------------------- 42 (288)
Q Consensus 9 ~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~---------------------------------------------- 42 (288)
-.++||||.+++++++..|+- +|.|++|.+.
T Consensus 199 ~k~pp~~g~l~~~~~q~~l~~---~a~~~a~~~~~~p~~~~ls~l~~~n~ppp~~p~~kl~~~~~~~n~~~~~~rd~~~~ 275 (345)
T KOG3697|consen 199 SKMPPPGGFLDTRLKQRPLAP---DAAQFAGKEQTYPQGRHLSDLRQGNSPPPSTPEGKLHVAPTYVNTQQIPRRDLFDE 275 (345)
T ss_pred ccCCCCCCccchhhhhccCCc---ccchhhhhccCCcccccccchhhcCCCCCCCCCccCCCCcccccccccchhhhccc
Confidence 346999999999999999963 3788877543
Q ss_pred -CCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccCChhhhhhhheecccC------CCcccccccc
Q psy5076 43 -TILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLD------TSPLIKPATK 108 (288)
Q Consensus 43 -~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~l~------~~~l~~p~~~ 108 (288)
+.+|+|+|+-...++.+|..+.--++- ....+..|+|+..||+|+..+.|. ..+|.+|+.+
T Consensus 276 ~~~~gqyvltgl~~~~~khlllvdpegv-----vrtkd~~fdsishli~yh~~~~lpiis~~sel~l~~pv~r 343 (345)
T KOG3697|consen 276 TTTPGQYVLTGLQSGQPKHLLLVDPEGV-----VRTKDRRFDSISHLINYHMDNHLPIISAGSELCLQQPVER 343 (345)
T ss_pred cCCCccEEEecccCCCcceEEEECCccc-----eecccchhhHHHHHHHHhhhccCceecCcchhhhhCcccc
Confidence 456889999888999999887643322 444578999999999999999885 2467788765
No 57
>KOG1702|consensus
Probab=97.98 E-value=7.8e-06 Score=66.41 Aligned_cols=54 Identities=26% Similarity=0.298 Sum_probs=48.2
Q ss_pred EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEc
Q psy5076 207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFI 262 (288)
Q Consensus 207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~ 262 (288)
..+|.||| .|++.+|++|.-||.|..+...++||..|.+ .|.+|..|+||++-+
T Consensus 209 tyra~ydy--saqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v 264 (264)
T KOG1702|consen 209 TYRAFYDY--SAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV 264 (264)
T ss_pred cchhhccC--cccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence 58899999 7889999999999999999999999987755 689999999999854
No 58
>KOG0515|consensus
Probab=97.92 E-value=4.1e-06 Score=77.13 Aligned_cols=56 Identities=21% Similarity=0.292 Sum_probs=47.5
Q ss_pred EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC---CCeeEEEeCCeeeEecCCcEEEcCC
Q psy5076 207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI---NGQWEGELNGKTGHFPFTHVEFIPT 264 (288)
Q Consensus 207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~---~~w~~~~~~~~~G~~P~~~v~~~~~ 264 (288)
.+-|++|| .++..+||+|.+||.+.|+++.| -+||-++++|+.|+||.||+-.+..
T Consensus 685 ~vYAlwdY--eaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyPr 743 (752)
T KOG0515|consen 685 VVYALWDY--EAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYPR 743 (752)
T ss_pred eeEEeecc--cccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCcc
Confidence 46789999 67888899999999999999854 4677677999999999999876543
No 59
>KOG1843|consensus
Probab=97.89 E-value=6.1e-06 Score=73.67 Aligned_cols=54 Identities=30% Similarity=0.405 Sum_probs=48.5
Q ss_pred eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC--CCeeEEEeCCeeeEecCCcEEE
Q psy5076 206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEF 261 (288)
Q Consensus 206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~--~~w~~~~~~~~~G~~P~~~v~~ 261 (288)
-.+.++|+| ..+.+++|+|++||+|.++++.+ +.||.++.++..|+||+|||..
T Consensus 417 n~a~a~ysf--age~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 417 NIATALYSF--AGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL 472 (473)
T ss_pred ceeeeeehh--ccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence 368999999 56778899999999999999875 6999999999999999999964
No 60
>KOG3875|consensus
Probab=97.86 E-value=3.9e-06 Score=72.37 Aligned_cols=58 Identities=34% Similarity=0.586 Sum_probs=49.9
Q ss_pred eEEeeeccCCCCCCCCCCCCCCCEEEEEEecC-----CCeEEEEeC-CCcEEEEeCCCeEeccc
Q psy5076 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-----EHWWTAQNI-SGEVGSIPVPYVQKYSE 168 (288)
Q Consensus 111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~-----~~ww~~~~~-~g~~G~vP~~~v~~~~~ 168 (288)
..++|+|||.+.++.||+|++||.+.|+.+++ ..||..... .+.+||||.|||+.+..
T Consensus 269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r 332 (362)
T KOG3875|consen 269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR 332 (362)
T ss_pred HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence 45789999999999999999999999988754 458887755 67899999999998876
No 61
>KOG1702|consensus
Probab=97.84 E-value=1.2e-05 Score=65.31 Aligned_cols=56 Identities=23% Similarity=0.468 Sum_probs=49.7
Q ss_pred eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEe
Q psy5076 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQK 165 (288)
Q Consensus 110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~ 165 (288)
...++|.|||.+++.++++|..||.|..++.-++||..|.. .+|.+|+.|+||++.
T Consensus 207 gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~ 263 (264)
T KOG1702|consen 207 GKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEF 263 (264)
T ss_pred CccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheee
Confidence 35789999999999999999999999888888889977764 678999999999985
No 62
>KOG3655|consensus
Probab=97.78 E-value=8.1e-06 Score=74.37 Aligned_cols=57 Identities=32% Similarity=0.674 Sum_probs=52.1
Q ss_pred eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166 (288)
Q Consensus 110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~ 166 (288)
.+.++|+|+|.+.++.+++|..++.|.++...+.|||.|.-.+|+.|+||+|||+.+
T Consensus 427 ~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 427 PQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred CCCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence 346789999999999999999999999999999999999877899999999999754
No 63
>KOG4773|consensus
Probab=97.76 E-value=4.7e-06 Score=72.97 Aligned_cols=68 Identities=18% Similarity=0.080 Sum_probs=59.1
Q ss_pred EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCCccCCCCCCc
Q psy5076 207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNGD 276 (288)
Q Consensus 207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~~~~~~~~~ 276 (288)
.++++++|. .....||.|.+|+++.++.+.+.+||.|...+.+||+|..|++++++..+++..+++..
T Consensus 177 ~~~a~~df~--gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~fpeeD~~~nw~r 244 (386)
T KOG4773|consen 177 RAEASFDFP--GNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDDFPEEDAGTNWLR 244 (386)
T ss_pred HHHhhccCC--CCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhccCccccCCCCccc
Confidence 467899994 45556999999999999999999999999999999999999999988888777766643
No 64
>KOG2222|consensus
Probab=97.75 E-value=2.8e-06 Score=77.28 Aligned_cols=59 Identities=29% Similarity=0.410 Sum_probs=52.5
Q ss_pred eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076 206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE 266 (288)
Q Consensus 206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~ 266 (288)
..++|+.|| ...+.+||.|++.|+|.+++.-+..+|.|+++|-+||||+.||+.+..-.
T Consensus 549 krakal~df--~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvellder~ 607 (848)
T KOG2222|consen 549 KRAKALHDF--AREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLDERG 607 (848)
T ss_pred HHHHHHhhh--hhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHHHhcc
Confidence 357899999 66778899999999999999999999999999999999999998875543
No 65
>KOG3523|consensus
Probab=97.75 E-value=3.1e-06 Score=79.03 Aligned_cols=58 Identities=29% Similarity=0.440 Sum_probs=51.5
Q ss_pred EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEcCCCC
Q psy5076 207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNE 266 (288)
Q Consensus 207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~~~ 266 (288)
-+.+...| .+..++||+|+.+|+|.|+.+.++||++|.. +|..||||..|++.|.+.+
T Consensus 610 Qv~~~~sy--~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~~~ 669 (695)
T KOG3523|consen 610 QVQCVHSY--KAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITNPH 669 (695)
T ss_pred hhheeecc--ccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcCHH
Confidence 47788889 6788889999999999999999999999854 5889999999999987765
No 66
>KOG3632|consensus
Probab=97.70 E-value=3.1e-05 Score=75.93 Aligned_cols=60 Identities=28% Similarity=0.383 Sum_probs=51.2
Q ss_pred EEEEEEcccCCCCCCC------eeeecCCCEEEEEE-eCCCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076 207 FARVKQVRVPNAYDKT------ALKLEIGDIIKVTK-TNINGQWEGELNGKTGHFPFTHVEFIPTNE 266 (288)
Q Consensus 207 ~~~~l~~~~~~~~~~~------eLs~~~g~~v~v~~-~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~ 266 (288)
.+.|+|||++....++ ||.|++|++|.|+. +.-+|++.|+++++.|++|+|+|.++.-.+
T Consensus 1140 ifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~vd~ 1206 (1335)
T KOG3632|consen 1140 IFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQPVDN 1206 (1335)
T ss_pred eeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccccCCc
Confidence 5789999997654433 89999999999996 445799999999999999999999986665
No 67
>KOG4278|consensus
Probab=97.69 E-value=4.4e-05 Score=72.42 Aligned_cols=60 Identities=17% Similarity=0.138 Sum_probs=48.5
Q ss_pred CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC-CCCeeEEEeCCeeeEecCCcEEEcCCCC
Q psy5076 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN-INGQWEGELNGKTGHFPFTHVEFIPTNE 266 (288)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~-~~~w~~~~~~~~~G~~P~~~v~~~~~~~ 266 (288)
|-++.||||| -+...+.|++.+||.+.|+.-. +++|.+.+..+..||||+||+.++....
T Consensus 90 pNLFVALYDF--vasGdntLSitKGeklRvLGYN~NgEWcEartKNGqGWVPSNyItPvNSLe 150 (1157)
T KOG4278|consen 90 PNLFVALYDF--VASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQGWVPSNYITPVNSLE 150 (1157)
T ss_pred CceeEeeeee--eccccceeeeecCceEEEeeecCCCcceeecccCCCccccccccccccchh
Confidence 4479999999 5677779999999999999866 5567777665455999999999986544
No 68
>KOG1843|consensus
Probab=97.65 E-value=2.5e-05 Score=69.82 Aligned_cols=55 Identities=36% Similarity=0.758 Sum_probs=49.9
Q ss_pred eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecC--CCeEEEEeCCCcEEEEeCCCeEe
Q psy5076 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE--EHWWTAQNISGEVGSIPVPYVQK 165 (288)
Q Consensus 110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~--~~ww~~~~~~g~~G~vP~~~v~~ 165 (288)
...+.++++|..+...+++|++||+|.++.+.+ ++||.++ .+++.|+||+|||+.
T Consensus 416 ~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr-~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 416 PNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGR-GNGYEGIFPANYVSL 472 (473)
T ss_pred cceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhh-ccccccccccceecc
Confidence 347899999999999999999999999999875 5899999 999999999999863
No 69
>KOG4575|consensus
Probab=97.51 E-value=0.0001 Score=69.32 Aligned_cols=58 Identities=24% Similarity=0.349 Sum_probs=48.6
Q ss_pred CCCeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeC--CeeeEecCCcEEEc
Q psy5076 203 KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELN--GKTGHFPFTHVEFI 262 (288)
Q Consensus 203 ~~~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~--~~~G~~P~~~v~~~ 262 (288)
++|++++|+|.+ ..+..++|.|..||++.+++..++.||.+... +-.|+||.|||..+
T Consensus 6 q~p~~vrA~y~w--~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcL 65 (874)
T KOG4575|consen 6 QLPCMVRALYAW--PGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCL 65 (874)
T ss_pred CCCceEEeeccC--CCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeec
Confidence 458899999998 56777799999999999999988888876543 56799999999655
No 70
>KOG2528|consensus
Probab=97.37 E-value=0.00012 Score=66.30 Aligned_cols=78 Identities=23% Similarity=0.230 Sum_probs=58.9
Q ss_pred EEEEEEcccCCCCCCCeeeecCCCEEEEEE-eCCCCeeEEEe-CCeeeEecCCcEEEcCCCCCccCC-CCCCccccCCCC
Q psy5076 207 FARVKQVRVPNAYDKTALKLEIGDIIKVTK-TNINGQWEGEL-NGKTGHFPFTHVEFIPTNETSVET-NGNGDIHNSTPK 283 (288)
Q Consensus 207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~-~~~~~w~~~~~-~~~~G~~P~~~v~~~~~~~~~~~~-~~~~~~~~~~~~ 283 (288)
.+|++||| .+....||++..||++.+.. ....|||+|.. .|.+|+||+.||+.+....+.+.. .+...+-.+++.
T Consensus 4 k~RamyDf--~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~~a~~sSs~As~p~~v~sl~~p 81 (490)
T KOG2528|consen 4 KARAMYDF--QSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTRLAVASSSLASIPFAVFSLTDP 81 (490)
T ss_pred chhhhcch--hhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeeccccchhccCCCCCCcccccCc
Confidence 58899999 55678899999999999985 45789999865 689999999999999866654433 333444555555
Q ss_pred CCC
Q psy5076 284 TET 286 (288)
Q Consensus 284 ~~~ 286 (288)
++.
T Consensus 82 ~sa 84 (490)
T KOG2528|consen 82 TSA 84 (490)
T ss_pred ccC
Confidence 554
No 71
>KOG3725|consensus
Probab=97.28 E-value=7.6e-05 Score=62.94 Aligned_cols=54 Identities=30% Similarity=0.250 Sum_probs=48.4
Q ss_pred EEEEEEcccCCCCCCCeeeecCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCcEEEc
Q psy5076 207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTN--INGQWEGELNGKTGHFPFTHVEFI 262 (288)
Q Consensus 207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~--~~~w~~~~~~~~~G~~P~~~v~~~ 262 (288)
.++++||| .+..+.||++..+|+|.|.+.. |.+|..|+.+++.|-+|..|++.+
T Consensus 319 kArVlyDY--dAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 319 KARVLYDY--DAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL 374 (375)
T ss_pred ceeeeecc--cccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence 58999999 6778889999999999998865 789999999999999999999764
No 72
>KOG4566|consensus
Probab=97.28 E-value=0.00047 Score=59.23 Aligned_cols=88 Identities=25% Similarity=0.396 Sum_probs=69.9
Q ss_pred CCCCCCCCCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeC-----
Q psy5076 4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIG----- 78 (288)
Q Consensus 4 ~~~~~~~~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~----- 78 (288)
++..+....||+|.+++++|+..|...+. |+||||+|+.....+.|+++....-+..+|...... |..+
T Consensus 45 s~~~~~~~g~~w~~~~~~~~~~~l~~~p~-~~~l~Rdss~~~~~~~I~vk~~~g~~~~r~~~~~~s-----fr~ds~~~~ 118 (258)
T KOG4566|consen 45 SLSLLDSSGHYWGLETANEAELCLGQEPR-GTFLVRDSSHRPYLFTISVKTHSGPKNLRIQYQDSS-----FRLDSSHRH 118 (258)
T ss_pred eeeccccCCcccccccchhHHHhhcCCCc-cceeeecCcCccccceeEeeeccCCCCccccccccc-----eeccccccc
Confidence 45567778999999999999999988766 999999999878788999998777777777765533 4432
Q ss_pred -C--cccCChhhhhhhheeccc
Q psy5076 79 -D--KTFSDLPSLLAFYKVHYL 97 (288)
Q Consensus 79 -~--~~F~sl~~LV~~y~~~~l 97 (288)
. ..|+.+..|+.+|+....
T Consensus 119 ~~pl~~~e~~~~~~~~y~~~~~ 140 (258)
T KOG4566|consen 119 TPPLISFEDVEVLIHHYRQSRK 140 (258)
T ss_pred CCCcccChhHHHHHHhhhhhhh
Confidence 2 489999999999966443
No 73
>KOG3557|consensus
Probab=97.23 E-value=0.00014 Score=68.74 Aligned_cols=60 Identities=27% Similarity=0.576 Sum_probs=53.9
Q ss_pred eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccCC
Q psy5076 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170 (288)
Q Consensus 110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~~ 170 (288)
...+.+.|+|.+.+..||++.+|+++.|+. ++..||.+++..|+.||||.|.+..+....
T Consensus 500 ~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~-d~R~WW~~kn~~G~~GyvP~nIL~~~~~~~ 559 (721)
T KOG3557|consen 500 KKWVLVLYDFQARNSSELSVKKGEVLEVLD-DGRKWWKVKNGHGRAGYVPSNILAPLQPEH 559 (721)
T ss_pred ceeeeeehhhhcccchhhhhhhhhhhhhhh-ccccceeccCccCCCCCcchhhhccCCCcc
Confidence 457889999999999999999999999998 567899999999999999999998877653
No 74
>KOG3523|consensus
Probab=97.06 E-value=6.7e-05 Score=70.33 Aligned_cols=58 Identities=24% Similarity=0.528 Sum_probs=52.4
Q ss_pred EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEecccC
Q psy5076 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSEG 169 (288)
Q Consensus 112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~~~~~ 169 (288)
.+.+...|.+..+++|++..+|++.|+++..+||..|.. .+|..||||.+|++++...
T Consensus 610 Qv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~~ 668 (695)
T KOG3523|consen 610 QVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITNP 668 (695)
T ss_pred hhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcCH
Confidence 366778899999999999999999999999999999976 6789999999999988765
No 75
>KOG4773|consensus
Probab=96.84 E-value=0.0001 Score=64.76 Aligned_cols=56 Identities=27% Similarity=0.582 Sum_probs=51.5
Q ss_pred EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168 (288)
Q Consensus 112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~ 168 (288)
.+.++++|.+....||.|.+|+++.++.+++.+||.|+ ..+.+||+|.+|+..+..
T Consensus 177 ~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk-~R~~~g~yp~sF~~~ld~ 232 (386)
T KOG4773|consen 177 RAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGK-VRGLTGYYPDSFVKQLDD 232 (386)
T ss_pred HHHhhccCCCCccceeeeehhhHHHHHhhcccceeeee-eccccccccHHhhhhhcc
Confidence 46688999999999999999999999999999999999 899999999999988844
No 76
>KOG3557|consensus
Probab=96.79 E-value=0.00051 Score=65.02 Aligned_cols=62 Identities=16% Similarity=0.255 Sum_probs=52.7
Q ss_pred CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCcEEEcCCCCCcc
Q psy5076 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFIPTNETSV 269 (288)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~~~~~~~~ 269 (288)
..++.++||| .+....||++.+||++.|+.. .-+||.++. -|+.||||.|.+..+...+...
T Consensus 500 ~k~~~~~Ydf--~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~~~~~~~ 562 (721)
T KOG3557|consen 500 KKWVLVLYDF--QARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQPEHTGE 562 (721)
T ss_pred ceeeeeehhh--hcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCCCccccc
Confidence 3488999999 788888999999999999876 456887766 4889999999999999888765
No 77
>KOG4429|consensus
Probab=96.79 E-value=0.00025 Score=60.94 Aligned_cols=55 Identities=24% Similarity=0.179 Sum_probs=49.8
Q ss_pred eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEc
Q psy5076 206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262 (288)
Q Consensus 206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~ 262 (288)
..+.++|.| ++...+||....|+++.+.++-..|||.|++.|..|-||+.+++..
T Consensus 364 ~lcdafYSf--qarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 364 ILCDAFYSF--QARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA 418 (421)
T ss_pred HHhhhhhcc--ccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence 368899999 7788889999999999999999999999999999999999998753
No 78
>KOG2222|consensus
Probab=96.75 E-value=0.0003 Score=64.45 Aligned_cols=57 Identities=35% Similarity=0.700 Sum_probs=51.0
Q ss_pred eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEeccc
Q psy5076 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168 (288)
Q Consensus 111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~ 168 (288)
.++.|+.||...+.+||.|+++|+|+++..-+.-.|.|. .+|-.||||+.||+-+..
T Consensus 549 krakal~df~r~dddelgfrkndiitiisekdehcwvge-lnglrgwfpakfvellde 605 (848)
T KOG2222|consen 549 KRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGE-LNGLRGWFPAKFVELLDE 605 (848)
T ss_pred HHHHHHhhhhhccccccccccccEEEEeecCCcceeeec-cccccccchHHHHHHHHh
Confidence 457789999999999999999999999998888889999 999999999999876544
No 79
>KOG2528|consensus
Probab=96.61 E-value=0.0017 Score=59.08 Aligned_cols=58 Identities=31% Similarity=0.532 Sum_probs=51.9
Q ss_pred EEeeeccCCCCCCCCCCCCCCCEEEEEEec-CCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQKYSEG 169 (288)
Q Consensus 112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~-~~~ww~~~~~~g~~G~vP~~~v~~~~~~ 169 (288)
.++++|+|.....++++...|+++.++..+ ..+||.+.+..|.+|.||+.||+.+...
T Consensus 4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~~a 62 (490)
T KOG2528|consen 4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTRLA 62 (490)
T ss_pred chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeeccc
Confidence 468899999999999999999999998865 5789999999999999999999987743
No 80
>KOG3771|consensus
Probab=96.42 E-value=0.003 Score=58.01 Aligned_cols=52 Identities=25% Similarity=0.137 Sum_probs=42.4
Q ss_pred EEEEEEcccCCCCCCCeeeecCCCEEEEEEeC-CCCeeEEEeCCeeeEecCCcEE
Q psy5076 207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTN-INGQWEGELNGKTGHFPFTHVE 260 (288)
Q Consensus 207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~-~~~w~~~~~~~~~G~~P~~~v~ 260 (288)
.+.++|+| .+.+.++|+|+.||+|.|+... .++||+|++.|..+-+|.+|+.
T Consensus 402 ~v~a~~dy--~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~ 454 (460)
T KOG3771|consen 402 KVKALHDY--AAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFP 454 (460)
T ss_pred ceeccccc--cccccccccccCCCEEEEecCCCccchhhHHHhhhccccccccee
Confidence 47899999 7899999999999999999854 4689999887776666666553
No 81
>KOG1856|consensus
Probab=96.35 E-value=0.0056 Score=61.73 Aligned_cols=82 Identities=20% Similarity=0.286 Sum_probs=63.2
Q ss_pred CccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEee-CCeEEEEEEEeecCCC---cceEEeeCCcccCChhh
Q psy5076 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKE-NNKVSHYIINKITNTE---QQTCYKIGDKTFSDLPS 87 (288)
Q Consensus 12 ~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~-~~~v~h~~I~~~~~~~---~~~~~~~~~~~F~sl~~ 87 (288)
|-|| +++-++|+.+|..... |.++||+|+......+++++- ++...|+.|...+..+ -++.+.+++..|..|.+
T Consensus 1109 P~F~-n~n~eQAe~yL~~~d~-ge~iiRpSSrgddhLvvtwKVsD~iYqhidV~E~eKEn~fslg~~l~i~~e~feDLDE 1186 (1299)
T KOG1856|consen 1109 PLFK-NLNAEQAEAYLSDMDQ-GELIIRPSSRGDDHLVVTWKVSDGIYQHIDVQELEKENYFSLGKTLWIGGEEFEDLDE 1186 (1299)
T ss_pred cccc-CCCHHHHHHHHHhccc-ccEEeccccCCCCceEEEEEecCchhhhhhhhhhhccccccccceEEECCcccccHHH
Confidence 7788 9999999999988777 999999999878888898886 4556777777544321 01114456789999999
Q ss_pred hhhhheec
Q psy5076 88 LLAFYKVH 95 (288)
Q Consensus 88 LV~~y~~~ 95 (288)
+|.-|-..
T Consensus 1187 iI~r~vqp 1194 (1299)
T KOG1856|consen 1187 IIARYVQP 1194 (1299)
T ss_pred HHHHHHHH
Confidence 99988653
No 82
>KOG1451|consensus
Probab=96.31 E-value=0.0032 Score=59.18 Aligned_cols=53 Identities=32% Similarity=0.388 Sum_probs=44.4
Q ss_pred EEEEEcccCCCCCCCeeeecCCCEEEEEE-eCCCCeeEEEeCCeeeEecCCcEEEc
Q psy5076 208 ARVKQVRVPNAYDKTALKLEIGDIIKVTK-TNINGQWEGELNGKTGHFPFTHVEFI 262 (288)
Q Consensus 208 ~~~l~~~~~~~~~~~eLs~~~g~~v~v~~-~~~~~w~~~~~~~~~G~~P~~~v~~~ 262 (288)
+.++|.- .+....+|+|..|.++..+. ...+||..|+++|+.|++|.|||+++
T Consensus 759 ~k~lyAc--~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~l 812 (812)
T KOG1451|consen 759 VKTLYAC--TADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEPL 812 (812)
T ss_pred ccceecc--CCCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccCcC
Confidence 5556554 67777899999999988776 55689999999999999999999864
No 83
>KOG0609|consensus
Probab=96.25 E-value=0.0011 Score=61.75 Aligned_cols=56 Identities=21% Similarity=0.392 Sum_probs=43.8
Q ss_pred eEEEEEEcccCCCCC-----CCeeeecCCCEEEEEEeCCCCeeEEEe-----CCeeeEecCCcEEE
Q psy5076 206 AFARVKQVRVPNAYD-----KTALKLEIGDIIKVTKTNINGQWEGEL-----NGKTGHFPFTHVEF 261 (288)
Q Consensus 206 ~~~~~l~~~~~~~~~-----~~eLs~~~g~~v~v~~~~~~~w~~~~~-----~~~~G~~P~~~v~~ 261 (288)
.+++|+|||+|.... ...|+|.+||++.|+.+.|..||.+.. ++.+|++|+..++.
T Consensus 215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qe 280 (542)
T KOG0609|consen 215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQE 280 (542)
T ss_pred eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHH
Confidence 589999999874332 226999999999999999999996543 25679999866544
No 84
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=96.19 E-value=0.0061 Score=51.44 Aligned_cols=73 Identities=19% Similarity=0.338 Sum_probs=53.8
Q ss_pred CCHHHHHHHHcC----CCCCCeEEEEeCCCCCCceEEEEeeCCeEEEEE--EEeecCCCcceEEeeCCcccCChhhhhhh
Q psy5076 18 MTRQEAQAILLS----EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYI--INKITNTEQQTCYKIGDKTFSDLPSLLAF 91 (288)
Q Consensus 18 isr~~ae~lL~~----~~~~G~FLvR~s~~~~~~~~lsv~~~~~v~h~~--I~~~~~~~~~~~~~~~~~~F~sl~~LV~~ 91 (288)
-++++++++|.. .+.--.|.+..+...+|.|.|+...+...+|.. |.....| |.+.+..|+++.+|+.+
T Consensus 141 g~~~e~e~~L~~~k~~nP~~i~Y~f~~~~~~PG~F~L~y~~~~~~~~~~~~v~V~p~G-----f~~r~~~f~~~~~L~~~ 215 (220)
T PF14633_consen 141 GTKEEVEEWLKEEKKANPKRIPYAFCISKEHPGYFILSYKPNKNPRHEYWPVKVTPDG-----FRFRKQVFPSLDRLINW 215 (220)
T ss_dssp S-CCCCHHHHHCHHHHSTTS-EEEEEE-TTSTTEEEEEEESSTTS-EEEEEEEE-SSS-----EEETTEEESSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEECCCCCCEEEEEEEcCCCCceEEeeEEEecCc-----EEEecccCCCHHHHHHH
Confidence 346677777864 233357888888888999999999866555554 8777777 99999999999999999
Q ss_pred heec
Q psy5076 92 YKVH 95 (288)
Q Consensus 92 y~~~ 95 (288)
++.+
T Consensus 216 FK~~ 219 (220)
T PF14633_consen 216 FKKH 219 (220)
T ss_dssp HHHH
T ss_pred Hhhc
Confidence 8753
No 85
>KOG0609|consensus
Probab=96.16 E-value=0.0017 Score=60.50 Aligned_cols=55 Identities=38% Similarity=0.767 Sum_probs=45.2
Q ss_pred eEEeeeccCCCCCC-------CCCCCCCCCEEEEEEecCCCeEEEEeC----CCcEEEEeCCCeEe
Q psy5076 111 EKVIAKYDFDGNDP-------DDLPFKKNDILIVVSKDEEHWWTAQNI----SGEVGSIPVPYVQK 165 (288)
Q Consensus 111 ~~~~a~~~~~~~~~-------~eLs~~~g~~i~vl~~~~~~ww~~~~~----~g~~G~vP~~~v~~ 165 (288)
..++|+|||.+..+ ..|+|++||++.|+.+++..||.++.. .+..|.+|+..+++
T Consensus 215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qe 280 (542)
T KOG0609|consen 215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQE 280 (542)
T ss_pred eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHH
Confidence 67889999998754 448999999999999999999998753 25679999876654
No 86
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=96.12 E-value=0.0092 Score=42.14 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=32.2
Q ss_pred CCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076 122 NDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169 (288)
Q Consensus 122 ~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~ 169 (288)
.+..+|.+++|+.+.|++..+..-|.|++..|+-|+||.+++-+....
T Consensus 28 ~G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~d~~ 75 (89)
T PF14603_consen 28 WGGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPLDGE 75 (89)
T ss_dssp --TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS------
T ss_pred CCcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCCCCc
Confidence 457889999999999999999999999999999999999998665544
No 87
>KOG3775|consensus
Probab=96.10 E-value=0.0043 Score=55.27 Aligned_cols=58 Identities=29% Similarity=0.292 Sum_probs=49.0
Q ss_pred EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEEcCCCC
Q psy5076 207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNE 266 (288)
Q Consensus 207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~~~~~~ 266 (288)
.-++++.|.| +.++||-|+.||.|.|-...++-|.+|.. .|++|+||+.|+..+....
T Consensus 264 THR~~~rFvP--RHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~e 323 (482)
T KOG3775|consen 264 THRAVFRFVP--RHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGPE 323 (482)
T ss_pred hhhhhhhccC--CCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCch
Confidence 4578999976 56669999999999999998999988744 6999999999999886654
No 88
>KOG0197|consensus
Probab=96.00 E-value=0.0024 Score=59.35 Aligned_cols=57 Identities=37% Similarity=0.816 Sum_probs=49.7
Q ss_pred eeEEeeeccCCCCCCCCCCCCCCCE-EEEEEecCCCeEEEEeC-CCcEEEEeCCCeEec
Q psy5076 110 IEKVIAKYDFDGNDPDDLPFKKNDI-LIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKY 166 (288)
Q Consensus 110 ~~~~~a~~~~~~~~~~eLs~~~g~~-i~vl~~~~~~ww~~~~~-~g~~G~vP~~~v~~~ 166 (288)
...++|+++|.+....+|+|.+|++ ..+++..+..||..++. .+..|++|.|||.+.
T Consensus 11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~ 69 (468)
T KOG0197|consen 11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN 69 (468)
T ss_pred cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence 3468999999999999999999999 77777777899998754 688999999999875
No 89
>KOG3775|consensus
Probab=95.41 E-value=0.0094 Score=53.19 Aligned_cols=60 Identities=23% Similarity=0.470 Sum_probs=52.8
Q ss_pred eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEecccC
Q psy5076 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSEG 169 (288)
Q Consensus 110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~~~~~ 169 (288)
.+.-++.+.|.+...+||.+..||-|.|-...++-|..|.| ..|+.|+||+.|+-++...
T Consensus 262 e~THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~ 322 (482)
T KOG3775|consen 262 EQTHRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGP 322 (482)
T ss_pred chhhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCc
Confidence 45567899999999999999999999888888888999988 5699999999999887765
No 90
>KOG1451|consensus
Probab=95.07 E-value=0.027 Score=53.26 Aligned_cols=56 Identities=25% Similarity=0.532 Sum_probs=48.0
Q ss_pred eeEEeeeccCCCCCCCCCCCCCCCEEEEEE-ecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNISGEVGSIPVPYVQKY 166 (288)
Q Consensus 110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~-~~~~~ww~~~~~~g~~G~vP~~~v~~~ 166 (288)
...+.+++...+....+++|..|.++.-.. ..++||..|+ .+|.+|++|.|||+.+
T Consensus 756 ~rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~Gt-LnGktglip~nyve~l 812 (812)
T KOG1451|consen 756 SRRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGT-LNGKTGLIPSNYVEPL 812 (812)
T ss_pred cccccceeccCCCCcccccccCcceeeeecccCCCCceeee-cCCCcccCcccccCcC
Confidence 345778888889999999999999988666 4578999999 9999999999999864
No 91
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=94.94 E-value=0.079 Score=34.12 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=30.1
Q ss_pred eeecCCCEEEEEEeCCCC-eeEE-EeCCeeeEecCCcEE
Q psy5076 224 LKLEIGDIIKVTKTNING-QWEG-ELNGKTGHFPFTHVE 260 (288)
Q Consensus 224 Ls~~~g~~v~v~~~~~~~-w~~~-~~~~~~G~~P~~~v~ 260 (288)
-.+..|+.|.++....++ |+.. ..++..||++..||.
T Consensus 17 ~~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 17 GQLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EEEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred EEEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence 456889999999887665 9887 668899999999984
No 92
>KOG4575|consensus
Probab=94.60 E-value=0.05 Score=51.87 Aligned_cols=58 Identities=24% Similarity=0.486 Sum_probs=46.8
Q ss_pred eEEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeC-CCcEEEEeCCCeEeccc
Q psy5076 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSE 168 (288)
Q Consensus 111 ~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~-~g~~G~vP~~~v~~~~~ 168 (288)
-.++|.|.+.++..++|.|-.||+|.++.-.++-||-+... ....|+||+|||.-+..
T Consensus 9 ~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcLd~ 67 (874)
T KOG4575|consen 9 CMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCLDK 67 (874)
T ss_pred ceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeeccc
Confidence 35789999999999999999999999999776656666544 45789999999955443
No 93
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=94.26 E-value=0.11 Score=33.43 Aligned_cols=37 Identities=16% Similarity=0.528 Sum_probs=29.9
Q ss_pred CCCCCCEEEEEEecCCC-eEEEEeCCCcEEEEeCCCeE
Q psy5076 128 PFKKNDILIVVSKDEEH-WWTAQNISGEVGSIPVPYVQ 164 (288)
Q Consensus 128 s~~~g~~i~vl~~~~~~-ww~~~~~~g~~G~vP~~~v~ 164 (288)
.+..|+.|.++.....+ |++....++..|||+..||+
T Consensus 18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence 35788999999977655 99886588899999999874
No 94
>KOG3725|consensus
Probab=93.87 E-value=0.014 Score=49.61 Aligned_cols=56 Identities=23% Similarity=0.501 Sum_probs=48.1
Q ss_pred eeEEeeeccCCCCCCCCCCCCCCCEEEEEEec--CCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKY 166 (288)
Q Consensus 110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~--~~~ww~~~~~~g~~G~vP~~~v~~~ 166 (288)
...+++++||.+....||++-.+++|.|..-. +.+|..|. .+++.|-+|..|++-+
T Consensus 317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgE-rGnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGE-RGNKKGKVPVTYLELL 374 (375)
T ss_pred ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhh-hcCCCCCcchhHHHhc
Confidence 34688999999999999999999999998865 46788888 7788999999998754
No 95
>KOG4429|consensus
Probab=93.69 E-value=0.021 Score=49.36 Aligned_cols=54 Identities=22% Similarity=0.215 Sum_probs=47.9
Q ss_pred EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166 (288)
Q Consensus 112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~ 166 (288)
.+.+.|.|.+...++|....|+++.+-+..+.+||.|+ ..|..|.||+.++++.
T Consensus 365 lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~r-l~gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 365 LCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCR-LLGDFEHFHAAEIEEA 418 (421)
T ss_pred HhhhhhccccccccccCCcccceeeecCcccCCCceee-eccccCCCcHHHHHHh
Confidence 46788999999999999999999988888889999999 8899999999888754
No 96
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=93.42 E-value=0.12 Score=36.54 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=28.8
Q ss_pred CCeeeecCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCcEEEcC
Q psy5076 221 KTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFIP 263 (288)
Q Consensus 221 ~~eLs~~~g~~v~v~~~~~~~w~~~~~-~~~~G~~P~~~v~~~~ 263 (288)
..+|.+.+||.+.|+...+..=|.|+. .|+-||||..++-+.+
T Consensus 30 ~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~d 73 (89)
T PF14603_consen 30 GKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPLD 73 (89)
T ss_dssp TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS----
T ss_pred cccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCCC
Confidence 458999999999999999888887776 5899999999885544
No 97
>KOG0199|consensus
Probab=93.31 E-value=0.31 Score=47.76 Aligned_cols=52 Identities=37% Similarity=0.450 Sum_probs=42.3
Q ss_pred CeEEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC-CCeeEEE--eCCeeeEecCCcEE
Q psy5076 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGE--LNGKTGHFPFTHVE 260 (288)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~-~~w~~~~--~~~~~G~~P~~~v~ 260 (288)
+..+++.||+ ..++.|.|.+||.|.|++... +-||.|. .+++.|.||.+-|.
T Consensus 376 p~~a~~~~d~----~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 376 PAVARETYDS----IEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT 430 (1039)
T ss_pred Cceeeeeccc----cCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence 5567777776 567799999999999998765 5788884 36789999999987
No 98
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=93.23 E-value=0.32 Score=32.05 Aligned_cols=37 Identities=24% Similarity=0.179 Sum_probs=30.0
Q ss_pred eeecCCCEEEEEEeCCCCeeEEEeC-CeeeEecCCcEE
Q psy5076 224 LKLEIGDIIKVTKTNINGQWEGELN-GKTGHFPFTHVE 260 (288)
Q Consensus 224 Ls~~~g~~v~v~~~~~~~w~~~~~~-~~~G~~P~~~v~ 260 (288)
-.+..|+.+.++...+++|...... |..||+|..++.
T Consensus 25 ~~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~~ 62 (63)
T smart00287 25 GTLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVVN 62 (63)
T ss_pred EEecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeeec
Confidence 4478999999998865589988876 899999887763
No 99
>KOG1856|consensus
Probab=92.83 E-value=0.25 Score=50.48 Aligned_cols=81 Identities=23% Similarity=0.418 Sum_probs=64.6
Q ss_pred CccccCCCHHHHHHHHcC-CCCCCeEE---EEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccCChhh
Q psy5076 12 SWYFGMMTRQEAQAILLS-EKDNGAFL---VRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPS 87 (288)
Q Consensus 12 ~Wy~g~isr~~ae~lL~~-~~~~G~FL---vR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~ 87 (288)
.+|. .=++++.|++|.. ...++.++ ..-|...+|.|+|+.+.+++++|--|...+.+ |++.+..|+|+.+
T Consensus 1206 kyf~-~Gt~~~~ek~L~~~k~~np~~~~Y~F~~s~~~PG~F~L~y~~~~k~~heyv~v~p~g-----~~~rg~~f~tld~ 1279 (1299)
T KOG1856|consen 1206 KYFF-TGTKKEVEKLLRDYKKVNPKKSVYFFCASHEHPGKFCLSYKPSSKPRHEYVKVVPEG-----FRFRGQNFGTLDE 1279 (1299)
T ss_pred hHhh-cCCHHHHHHHHHHHhccCCCeeeEEEEecccCCceEEEEeccCCCccceeEEEcccc-----eEEecccchhHHH
Confidence 4555 3348899999984 33335554 45677889999999999999999999988887 9999999999999
Q ss_pred hhhhheecccC
Q psy5076 88 LLAFYKVHYLD 98 (288)
Q Consensus 88 LV~~y~~~~l~ 98 (288)
|..+++.+-..
T Consensus 1280 L~~~FK~h~~~ 1290 (1299)
T KOG1856|consen 1280 LCRWFKRHYKD 1290 (1299)
T ss_pred HHHHHHHHhcC
Confidence 99998876443
No 100
>KOG3771|consensus
Probab=92.82 E-value=0.058 Score=49.83 Aligned_cols=53 Identities=26% Similarity=0.324 Sum_probs=40.3
Q ss_pred eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecC-CCeEEEEeCCCcEEEEeCCCe
Q psy5076 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYV 163 (288)
Q Consensus 110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~-~~ww~~~~~~g~~G~vP~~~v 163 (288)
...+.++++|.+++.++|+|..|++|.|+..++ +.||.|. ..|..+-++.+|+
T Consensus 400 ~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~-~mg~ke~~~~~~~ 453 (460)
T KOG3771|consen 400 LYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGW-LMGVKESDWNGLF 453 (460)
T ss_pred ccceeccccccccccccccccCCCEEEEecCCCccchhhHH-Hhhhcccccccce
Confidence 346789999999999999999999999998553 5688887 4454444444444
No 101
>KOG3565|consensus
Probab=92.62 E-value=0.06 Score=52.58 Aligned_cols=56 Identities=18% Similarity=0.345 Sum_probs=45.8
Q ss_pred EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCC-CCeeEEE--eCCeeeEecCCcEEEcCC
Q psy5076 207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGE--LNGKTGHFPFTHVEFIPT 264 (288)
Q Consensus 207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~-~~w~~~~--~~~~~G~~P~~~v~~~~~ 264 (288)
.+.++|.| .+..++++++..|+++.+++... +||=+++ .++..|+||..|++.+..
T Consensus 580 ~~~a~~~~--~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~~ 638 (640)
T KOG3565|consen 580 TSKALYAF--EGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTET 638 (640)
T ss_pred ceecccCc--CCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCccccccccc
Confidence 47778888 66777899999999999998765 5665776 678999999999987654
No 102
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=92.36 E-value=0.23 Score=41.50 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=69.2
Q ss_pred CCCCCCEEEEEEecCC-CeEEEEeCCCcEEEEeCCCeEecccCCcccccccCCCCCCCCCCCCCCCccccccccCCCCCe
Q psy5076 128 PFKKNDILIVVSKDEE-HWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPA 206 (288)
Q Consensus 128 s~~~g~~i~vl~~~~~-~ww~~~~~~g~~G~vP~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (288)
++++|+.+.|+..... +|.+.+..+|+.|||+..++........+ .|.+...
T Consensus 49 ~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~e~s~~~~------------------------~p~~~~n--- 101 (205)
T COG3103 49 SIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSEPSSNER------------------------VPDLELN--- 101 (205)
T ss_pred EecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhcccccccee------------------------cCchhhh---
Confidence 5789999999998765 78888878899999999887654433111 1111111
Q ss_pred EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEc
Q psy5076 207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262 (288)
Q Consensus 207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~ 262 (288)
++.+-.-.... .=.+..|..+.+..+..++|..-...++.||+-..|+..-
T Consensus 102 -Vr~~t~t~~~v----~g~~~~~t~~~~~sk~~~~w~~~~~~~k~~~vs~q~~~~~ 152 (205)
T COG3103 102 -VRELTKTLSNV----DGTWKQGTAVMQISKTQNNWYIITLKGKNGYVSGQLVTAQ 152 (205)
T ss_pred -hhhcccchhhh----hhhhhcCcEEEEEeeccccchhhhhhcccchhhhhheecc
Confidence 11111000000 1136788899999998899999999999999988887543
No 103
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=92.33 E-value=0.59 Score=30.07 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=29.3
Q ss_pred eeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcE
Q psy5076 223 ALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259 (288)
Q Consensus 223 eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v 259 (288)
-..+.+|..+.+++. .++|...+.+|..||++...|
T Consensus 18 v~~l~~g~~v~v~~~-~~~W~~V~~~g~~GWv~~~~l 53 (55)
T PF06347_consen 18 VARLEPGVPVRVIEC-RGGWCKVRADGRTGWVHKSLL 53 (55)
T ss_pred EEEECCCCEEEEEEc-cCCeEEEEECCeEEeEEeeec
Confidence 456788999998854 778998889999999988764
No 104
>KOG0199|consensus
Probab=91.76 E-value=0.18 Score=49.37 Aligned_cols=52 Identities=27% Similarity=0.483 Sum_probs=43.0
Q ss_pred EeeeccCCCCCCCCCCCCCCCEEEEEEecC-CCeEEEEe-CCCcEEEEeCCCeE
Q psy5076 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQN-ISGEVGSIPVPYVQ 164 (288)
Q Consensus 113 ~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~-~~ww~~~~-~~g~~G~vP~~~v~ 164 (288)
+++-..|.....+.|.|++||.|.|++... +.||+|.+ .+++.|.||.+-|.
T Consensus 377 ~~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 377 AVARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT 430 (1039)
T ss_pred ceeeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence 455566778889999999999999999764 46999976 66889999998877
No 105
>KOG3812|consensus
Probab=91.43 E-value=0.13 Score=45.66 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=38.8
Q ss_pred EEEEEcccCCCCC-----CCeeeecCCCEEEEEEeCCCCeeEEEe---CCeeeEecC
Q psy5076 208 ARVKQVRVPNAYD-----KTALKLEIGDIIKVTKTNINGQWEGEL---NGKTGHFPF 256 (288)
Q Consensus 208 ~~~l~~~~~~~~~-----~~eLs~~~g~~v~v~~~~~~~w~~~~~---~~~~G~~P~ 256 (288)
+++..+|++...+ ...++|...|-+.|-++-+++||.|++ ++..||+|+
T Consensus 61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred EEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence 5777888654333 125999999999999999999998865 567899997
No 106
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=90.86 E-value=0.6 Score=30.72 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=28.4
Q ss_pred CCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCe
Q psy5076 128 PFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163 (288)
Q Consensus 128 s~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v 163 (288)
.+..|+.+.++.....+|......+|..||++..++
T Consensus 26 ~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~ 61 (63)
T smart00287 26 TLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV 61 (63)
T ss_pred EecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence 367899999998765589998855699999977654
No 107
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.52 E-value=0.46 Score=39.82 Aligned_cols=42 Identities=7% Similarity=0.184 Sum_probs=34.5
Q ss_pred CCCCCCEEEEEEecC-CCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076 128 PFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYVQKYSEG 169 (288)
Q Consensus 128 s~~~g~~i~vl~~~~-~~ww~~~~~~g~~G~vP~~~v~~~~~~ 169 (288)
.+..|+.|.++...+ .+|...+..+|+.|||+..|+......
T Consensus 49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~p~~ 91 (206)
T PRK10884 49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTTPSL 91 (206)
T ss_pred EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCCccH
Confidence 467899999998765 579998877899999999998765544
No 108
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.94 E-value=0.7 Score=38.77 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=31.8
Q ss_pred eeecCCCEEEEEEeCC-CCeeEEEe-CCeeeEecCCcEEEc
Q psy5076 224 LKLEIGDIIKVTKTNI-NGQWEGEL-NGKTGHFPFTHVEFI 262 (288)
Q Consensus 224 Ls~~~g~~v~v~~~~~-~~w~~~~~-~~~~G~~P~~~v~~~ 262 (288)
-++.+|+.|.|++..+ ++|...+. +|+.||++..||...
T Consensus 48 ~~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~ 88 (206)
T PRK10884 48 GTLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTT 88 (206)
T ss_pred EEEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCC
Confidence 4578999999998776 57887764 688999999998654
No 109
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=87.81 E-value=3.5 Score=28.49 Aligned_cols=43 Identities=28% Similarity=0.434 Sum_probs=34.7
Q ss_pred CccccCCCHHHHHHHHcC--CCCCCeEEEEeCCCCCCceEEEEeeC
Q psy5076 12 SWYFGMMTRQEAQAILLS--EKDNGAFLVRDSNTILGNYVLCVKEN 55 (288)
Q Consensus 12 ~Wy~g~isr~~ae~lL~~--~~~~G~FLvR~s~~~~~~~~lsv~~~ 55 (288)
|=|...|+=+|....|+. ..+ |+|+.|-|.+..|++++-....
T Consensus 3 pgY~AFlTYdevk~~L~~~~~kp-GsYiFRlSCTrLGQWAIGyV~~ 47 (86)
T PF02762_consen 3 PGYMAFLTYDEVKARLQHYRDKP-GSYIFRLSCTRLGQWAIGYVTQ 47 (86)
T ss_dssp TTBETT--HHHHHHHHGGGTTST-TEEEEEEESSSTTSEEEEEEET
T ss_pred CceeEEEeHHHHHHHHHHHhCCc-ccEEEeeccccccceeEEEEcC
Confidence 557788999999999986 455 9999999999999999887763
No 110
>KOG4384|consensus
Probab=85.49 E-value=0.44 Score=42.58 Aligned_cols=63 Identities=38% Similarity=0.614 Sum_probs=56.5
Q ss_pred EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCCCCcc
Q psy5076 207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSV 269 (288)
Q Consensus 207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~~~~~ 269 (288)
.+++.-+|.+..++.++|.+.+|+++.++.+..=+-|.+-++++.|-|+.-||..+..+.+..
T Consensus 138 ~~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~~s~e~~~~ 200 (361)
T KOG4384|consen 138 RARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDVISEEEPAP 200 (361)
T ss_pred cccccccCCCCcccccchhhcccchhhccccCccccccccccCcccccccceecccccccccc
Confidence 367888899899999999999999999999999999999999999999999999887666543
No 111
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=85.22 E-value=2 Score=27.58 Aligned_cols=35 Identities=11% Similarity=0.229 Sum_probs=27.8
Q ss_pred CCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCe
Q psy5076 127 LPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163 (288)
Q Consensus 127 Ls~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v 163 (288)
..+.+|..+.++. ..++|...+ .+|..||++.+.|
T Consensus 19 ~~l~~g~~v~v~~-~~~~W~~V~-~~g~~GWv~~~~l 53 (55)
T PF06347_consen 19 ARLEPGVPVRVIE-CRGGWCKVR-ADGRTGWVHKSLL 53 (55)
T ss_pred EEECCCCEEEEEE-ccCCeEEEE-ECCeEEeEEeeec
Confidence 3467788887775 567899999 9999999988765
No 112
>KOG0040|consensus
Probab=80.99 E-value=0.044 Score=57.03 Aligned_cols=57 Identities=14% Similarity=0.247 Sum_probs=50.7
Q ss_pred EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcEEEcCCC
Q psy5076 207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN 265 (288)
Q Consensus 207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~~~~~G~~P~~~v~~~~~~ 265 (288)
.+.++|+| ....+.+.+.++||++..+.-..-.||.++++...|++|+.||+.+...
T Consensus 970 ~v~alyd~--q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen 970 CVLALYDY--QEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred HHHHHHHH--HhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhccC
Confidence 46789999 6788889999999999888888889999999999999999999888665
No 113
>KOG3565|consensus
Probab=79.09 E-value=0.56 Score=46.00 Aligned_cols=58 Identities=26% Similarity=0.563 Sum_probs=48.7
Q ss_pred eeEEeeeccCCCCCCCCCCCCCCCEEEEEEecC-CCeEEEE-eCCCcEEEEeCCCeEecc
Q psy5076 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQ-NISGEVGSIPVPYVQKYS 167 (288)
Q Consensus 110 ~~~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~-~~ww~~~-~~~g~~G~vP~~~v~~~~ 167 (288)
...+.+++.|.++.++++++..|+++.+++.+. +||=.++ ..++..|+||.+|+....
T Consensus 578 ~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~ 637 (640)
T KOG3565|consen 578 IRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTE 637 (640)
T ss_pred ccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence 567889999999999999999999999998774 5676666 467889999999987543
No 114
>KOG3705|consensus
Probab=77.97 E-value=2.2 Score=38.99 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=39.8
Q ss_pred EEEEEEcccCCCCCCCeeeecCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCcEEE
Q psy5076 207 FARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEF 261 (288)
Q Consensus 207 ~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~~~~w~~~~~--~~~~G~~P~~~v~~ 261 (288)
-.+++++.. ++..+|+.++.||.|.|-...=+|.-.|.. .++.|+||+..|++
T Consensus 511 n~ivi~aH~--prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 511 NVIVIEAHI--PRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE 565 (580)
T ss_pred ceEEEEecC--CCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence 467899994 467779999999999887655455555533 46889999987765
No 115
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=76.02 E-value=8.5 Score=24.82 Aligned_cols=34 Identities=12% Similarity=-0.099 Sum_probs=23.5
Q ss_pred eeeecCCCEEEEEEeC-CCCeeEEEeCCeeeEecC
Q psy5076 223 ALKLEIGDIIKVTKTN-INGQWEGELNGKTGHFPF 256 (288)
Q Consensus 223 eLs~~~g~~v~v~~~~-~~~w~~~~~~~~~G~~P~ 256 (288)
+-.+..|+-|.|++.. |..|..++.....|||++
T Consensus 20 ~s~l~~gtPv~i~H~S~D~~W~fV~t~~~~GWV~s 54 (54)
T PF12913_consen 20 NSALHPGTPVYILHTSRDGAWAFVQTPFYSGWVKS 54 (54)
T ss_dssp EEEE-TT-EEEEEEE-TTSSEEEEE-SS-EEEEEG
T ss_pred hcccCCCCCEEEEEECCCCCEEEEecCCeeEeeeC
Confidence 5578899999998876 556668999999999974
No 116
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=75.47 E-value=5.2 Score=37.87 Aligned_cols=38 Identities=26% Similarity=0.225 Sum_probs=32.5
Q ss_pred eecCCCEEEEEEeCCCCeeEEEeC-CeeeEecCCcEEEc
Q psy5076 225 KLEIGDIIKVTKTNINGQWEGELN-GKTGHFPFTHVEFI 262 (288)
Q Consensus 225 s~~~g~~v~v~~~~~~~w~~~~~~-~~~G~~P~~~v~~~ 262 (288)
++..|+.|.|+...++||+....+ |+.|||-..||..-
T Consensus 104 sl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~~ 142 (481)
T PRK13914 104 SIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTDK 142 (481)
T ss_pred eecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccCC
Confidence 578999999987568899999885 89999999998764
No 117
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=74.40 E-value=4.8 Score=38.08 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=32.6
Q ss_pred CCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEec
Q psy5076 128 PFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166 (288)
Q Consensus 128 s~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~ 166 (288)
++..|+.|.|+...+++|+.....+|+.|||-..||...
T Consensus 104 sl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~~ 142 (481)
T PRK13914 104 SIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTDK 142 (481)
T ss_pred eecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccCC
Confidence 478999999986556789999855799999999998764
No 118
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=74.10 E-value=6.2 Score=33.04 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=33.1
Q ss_pred eeecCCCEEEEEEeCCC-CeeEEEeC-CeeeEecCCcEEEcCCC
Q psy5076 224 LKLEIGDIIKVTKTNIN-GQWEGELN-GKTGHFPFTHVEFIPTN 265 (288)
Q Consensus 224 Ls~~~g~~v~v~~~~~~-~w~~~~~~-~~~G~~P~~~v~~~~~~ 265 (288)
=++.+||.|.|+....+ +|...+.. |+.||||..++..-...
T Consensus 48 ~~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~e~s~ 91 (205)
T COG3103 48 GSIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSEPSS 91 (205)
T ss_pred eEecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhcccccc
Confidence 46789999999998766 77777774 78999999888654433
No 119
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=70.32 E-value=6.4 Score=25.67 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=20.5
Q ss_pred eecCCCEEEEEEeCCCCeeEEEeC
Q psy5076 225 KLEIGDIIKVTKTNINGQWEGELN 248 (288)
Q Consensus 225 s~~~g~~v~v~~~~~~~w~~~~~~ 248 (288)
.|+.|+.|.+....+++||.+.+-
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~ 25 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVT 25 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEE
Confidence 478999999998889999988664
No 120
>KOG3812|consensus
Probab=68.78 E-value=2.3 Score=38.02 Aligned_cols=47 Identities=26% Similarity=0.549 Sum_probs=34.8
Q ss_pred eeeccCCCCC-------CCCCCCCCCCEEEEEEecCCCeEEEEe--CCCcEEEEeC
Q psy5076 114 IAKYDFDGND-------PDDLPFKKNDILIVVSKDEEHWWTAQN--ISGEVGSIPV 160 (288)
Q Consensus 114 ~a~~~~~~~~-------~~eLs~~~g~~i~vl~~~~~~ww~~~~--~~g~~G~vP~ 160 (288)
.+.-+|.+.- ...++|...|.+.|-++-.++||.|+. .....|+||+
T Consensus 62 ~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 62 RTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred EeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence 3455665543 344888899999888888899999975 3456799996
No 121
>KOG3705|consensus
Probab=66.47 E-value=5.8 Score=36.39 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=41.6
Q ss_pred EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEe-CCCcEEEEeCCCeEe
Q psy5076 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQK 165 (288)
Q Consensus 112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~-~~g~~G~vP~~~v~~ 165 (288)
..+++++..++...|+.++.||+|-|-...-+|.-.|.+ ..++.|.||+--|++
T Consensus 511 n~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 511 NVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE 565 (580)
T ss_pred ceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence 367788888999999999999999887655455555655 457889999876655
No 122
>KOG1314|consensus
Probab=65.33 E-value=7.6 Score=34.99 Aligned_cols=46 Identities=33% Similarity=0.343 Sum_probs=32.1
Q ss_pred CCCCeeeecCCCEEEEEEeCCCCeeEEEe-----------CCeeeEecCCc-EEEcCCC
Q psy5076 219 YDKTALKLEIGDIIKVTKTNINGQWEGEL-----------NGKTGHFPFTH-VEFIPTN 265 (288)
Q Consensus 219 ~~~~eLs~~~g~~v~v~~~~~~~w~~~~~-----------~~~~G~~P~~~-v~~~~~~ 265 (288)
.+..-|++.+||.+.+... .++|..|.. ...+||||.+. ++..+..
T Consensus 329 ~ddprisL~p~d~i~~tr~-~~~wlyg~~~l~e~~~E~~~rkiRgwfP~~~a~e~~e~~ 386 (414)
T KOG1314|consen 329 TDDPRISLPPGDGIKATRG-FNHWLYGEEILSEMFNESRERKIRGWFPRNCAVEKCEKD 386 (414)
T ss_pred CCCcccccCCCcceeeeee-eecccchhhhhhHHHhhcchhhhcccccccccccccccc
Confidence 3344799999999988765 677877632 12479999999 5554433
No 123
>KOG3667|consensus
Probab=64.92 E-value=8.5 Score=37.70 Aligned_cols=53 Identities=26% Similarity=0.447 Sum_probs=39.7
Q ss_pred CCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCCeE-EEEEEE
Q psy5076 11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKV-SHYIIN 64 (288)
Q Consensus 11 ~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~~v-~h~~I~ 64 (288)
..-..|.++++.+.++|....+ |+|++|.|++..|...+......+- .|+-|.
T Consensus 563 dg~Imgfinkq~~~~ll~~~~~-GtflLrfs~S~~GgiT~~~v~~~~~~~~~~i~ 616 (682)
T KOG3667|consen 563 DGVIMGFINKQQERALLMTKPD-GTFLLRFSASEEGGITIAWVEDQKQNLIMMIM 616 (682)
T ss_pred cceeeeecchhhhhhhhhcCCC-CCceeeeeccccCceeEEecccccccceeEec
Confidence 3455789999999999988766 9999999998777766655543333 466666
No 124
>KOG0040|consensus
Probab=64.18 E-value=0.16 Score=53.16 Aligned_cols=57 Identities=28% Similarity=0.747 Sum_probs=51.1
Q ss_pred EEeeeccCCCCCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169 (288)
Q Consensus 112 ~~~a~~~~~~~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~ 169 (288)
.+.++|+|....+.+...++||++.++......||.++ .+.+.|++|+.||+.+.+.
T Consensus 970 ~v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve-~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen 970 CVLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVE-VNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred HHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccch-hhhhcCcchHHHHHHhccC
Confidence 45689999999999999999999988887778999999 8889999999999887765
No 125
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=60.74 E-value=13 Score=24.11 Aligned_cols=22 Identities=50% Similarity=0.930 Sum_probs=19.2
Q ss_pred CCCCCCEEEEEEecCCCeEEEE
Q psy5076 128 PFKKNDILIVVSKDEEHWWTAQ 149 (288)
Q Consensus 128 s~~~g~~i~vl~~~~~~ww~~~ 149 (288)
.|+.|+.|.+....++.||.+.
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~ 23 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAV 23 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEE
Confidence 5889999999987788899986
No 126
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=60.74 E-value=11 Score=25.95 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=19.0
Q ss_pred eeeecCCCEEEEEEeC------CCCeeEEEe
Q psy5076 223 ALKLEIGDIIKVTKTN------INGQWEGEL 247 (288)
Q Consensus 223 eLs~~~g~~v~v~~~~------~~~w~~~~~ 247 (288)
-|+++.|+.|.|-... +..||.|..
T Consensus 3 FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~V 33 (75)
T PF11302_consen 3 FLSVKPGDTVIVQDEQEVGQKQDKDWWMGQV 33 (75)
T ss_pred ccccCCCCEEEEecCccccccCCCCcEEEEE
Confidence 5788999998886544 578997754
No 127
>KOG3508|consensus
Probab=60.51 E-value=3 Score=42.22 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=43.8
Q ss_pred CCccccCCCHHHHHHHHcCCCCCCeEEEEeCCCCCCceEEEEeeCC-eEEEEEEEe
Q psy5076 11 NSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENN-KVSHYIINK 65 (288)
Q Consensus 11 ~~Wy~g~isr~~ae~lL~~~~~~G~FLvR~s~~~~~~~~lsv~~~~-~v~h~~I~~ 65 (288)
..||||++.|.-++..++...+-|.++||.+...++.+.+++--+- .+.|+++.-
T Consensus 81 ~~~~~~~lrr~i~e~r~r~~e~s~~~wi~e~~~lp~~~~l~~~~~~d~~l~~r~~s 136 (932)
T KOG3508|consen 81 RKWYMENLRRTIAESRLRRAENSGSYWIREAKRLPGKGKLSCLLQLDGTLYARTIS 136 (932)
T ss_pred hhhhhcchhhhcccchhhccCCceeEEeeccCcCCCcceeehhhccchhHHhhhhh
Confidence 3799999999999999887666699999999988888877766432 277777654
No 128
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=48.20 E-value=27 Score=24.91 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=20.8
Q ss_pred CCCCeEEEEeCCCCCCceEEEEeeCC
Q psy5076 31 KDNGAFLVRDSNTILGNYVLCVKENN 56 (288)
Q Consensus 31 ~~~G~FLvR~s~~~~~~~~lsv~~~~ 56 (288)
+.||+|.|.......|.|.|++..++
T Consensus 53 ~~dGty~v~y~P~~~G~~~i~V~~~g 78 (93)
T smart00557 53 NGDGTYTVSYTPTEPGDYTVTVKFGG 78 (93)
T ss_pred CCCCEEEEEEEeCCCEeEEEEEEECC
Confidence 45588888888877888888888765
No 129
>COG3807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.20 E-value=86 Score=24.88 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=23.7
Q ss_pred CCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCe
Q psy5076 129 FKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163 (288)
Q Consensus 129 ~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v 163 (288)
+++|.=+.|++.- +.|=+.+..+|..|||-.+.+
T Consensus 61 ~k~GlPVEIvqEy-~~WRrirDadG~egWv~qsll 94 (171)
T COG3807 61 LKKGLPVEIVQEY-DNWRRIRDADGTEGWVHQSLL 94 (171)
T ss_pred eccCCceehhhhh-hhhhheeCCCCCceeeeeecc
Confidence 4677777777643 457666667899999976555
No 130
>PF15517 TBPIP_N: TBP-interacting protein N-terminus; PDB: 2CZR_A.
Probab=40.79 E-value=24 Score=25.18 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=8.7
Q ss_pred CHHHHHHHHcC
Q psy5076 19 TRQEAQAILLS 29 (288)
Q Consensus 19 sr~~ae~lL~~ 29 (288)
+|++|++|-.+
T Consensus 48 skE~AdKla~k 58 (99)
T PF15517_consen 48 SKEEADKLAEK 58 (99)
T ss_dssp SHHHHHHHSS-
T ss_pred CHHHHHHhhhc
Confidence 79999998764
No 131
>KOG1785|consensus
Probab=40.67 E-value=44 Score=30.78 Aligned_cols=46 Identities=26% Similarity=0.439 Sum_probs=37.6
Q ss_pred CccccCCCHHHHHHHHcC--CCCCCeEEEEeCCCCCCceEEEEee-CCeE
Q psy5076 12 SWYFGMMTRQEAQAILLS--EKDNGAFLVRDSNTILGNYVLCVKE-NNKV 58 (288)
Q Consensus 12 ~Wy~g~isr~~ae~lL~~--~~~~G~FLvR~s~~~~~~~~lsv~~-~~~v 58 (288)
+=|...++=+|..+.|+. ..+ |+|+.|-|.++.|++++-... +|.|
T Consensus 257 PGYmAFLTYDEVk~RLqk~~~Kp-GSYIFRlSCTRlGQWAIGYVt~dG~I 305 (563)
T KOG1785|consen 257 PGYMAFLTYDEVKARLQKYIKKP-GSYIFRLSCTRLGQWAIGYVTADGNI 305 (563)
T ss_pred CceeEEeeHHHHHHHHHHHhcCC-CceEEeeccCcccceeEEEEcCCCce
Confidence 557788999999999986 455 999999999999999887765 4444
No 132
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=32.63 E-value=47 Score=23.64 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=16.3
Q ss_pred CCCeEEEEeCCCCCCceEEEEeeCC
Q psy5076 32 DNGAFLVRDSNTILGNYVLCVKENN 56 (288)
Q Consensus 32 ~~G~FLvR~s~~~~~~~~lsv~~~~ 56 (288)
.+|.|.|.-.....|.|.|+|..++
T Consensus 68 ~~G~y~v~y~p~~~G~y~i~V~~~g 92 (101)
T PF00630_consen 68 GDGTYTVSYTPTEPGKYKISVKING 92 (101)
T ss_dssp SSSEEEEEEEESSSEEEEEEEEESS
T ss_pred CCCEEEEEEEeCccEeEEEEEEECC
Confidence 3477777766666677777776654
No 133
>KOG3580|consensus
Probab=24.90 E-value=1.2e+02 Score=29.76 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=36.5
Q ss_pred eEEEEEEcccCCCCCCCeeeecCCCEEEEEEeC----CCCeeEEEeCC-----eeeEecCC
Q psy5076 206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTN----INGQWEGELNG-----KTGHFPFT 257 (288)
Q Consensus 206 ~~~~~l~~~~~~~~~~~eLs~~~g~~v~v~~~~----~~~w~~~~~~~-----~~G~~P~~ 257 (288)
.|.+.-|.+ ....+..|.|.+||+..|+... .+.|+..+.+. ..|++|..
T Consensus 505 FyIRtHFE~--Eke~P~gL~FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPNk 563 (1027)
T KOG3580|consen 505 FYIRTHFEC--EKETPQGLAFTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPNK 563 (1027)
T ss_pred eEEeeeeee--cCCCCccccccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCCc
Confidence 456666666 5677789999999999998765 24566666654 47999863
No 134
>PF07935 SSV1_ORF_D-335: ORF D-335-like protein; InterPro: IPR012922 The sequences featured in this family are similar to a probable integrase (P20214 from SWISSPROT) expressed by the SSV1 virus of the archaeon Sulfolobus shibatae. This protein may be necessary for the integration of the virus into the host genome by a process of site-specific recombination [].
Probab=22.95 E-value=2.6e+02 Score=19.15 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=27.5
Q ss_pred CeEEEEeCCCCCCceEEEEeeCCeEEEEEEEeecCCCcceEEeeCCcccCChhhhhhhheecc
Q psy5076 34 GAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHY 96 (288)
Q Consensus 34 G~FLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~~~~~~~~~~~~~~F~sl~~LV~~y~~~~ 96 (288)
|.|+||+.. | +..-|+|+....++.. +..-.+|.++|+.|.+..
T Consensus 6 gd~~irE~K---G----------kYYVY~iE~~~~G~~r------e~YVGpL~~VVe~Yik~K 49 (72)
T PF07935_consen 6 GDIIIRERK---G----------KYYVYKIEKDINGERR------ETYVGPLDDVVETYIKLK 49 (72)
T ss_pred CcEEEEEeC---C----------eEEEEEEEeccCCcee------eeeeccHHHHHHHHHhcc
Confidence 778888733 3 3445677764443211 334578999999998863
No 135
>KOG4384|consensus
Probab=20.20 E-value=78 Score=28.69 Aligned_cols=57 Identities=32% Similarity=0.470 Sum_probs=45.1
Q ss_pred EEeeeccCCC--CCCCCCCCCCCCEEEEEEecCCCeEEEEeCCCcEEEEeCCCeEecccC
Q psy5076 112 KVIAKYDFDG--NDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169 (288)
Q Consensus 112 ~~~a~~~~~~--~~~~eLs~~~g~~i~vl~~~~~~ww~~~~~~g~~G~vP~~~v~~~~~~ 169 (288)
++++..+|.+ .+.+++.+++|+++.++.+..-+-|.+- .+++.|.|+.-|+..+...
T Consensus 138 ~~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~-~~~kv~~f~~~~v~~~s~e 196 (361)
T KOG4384|consen 138 RARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGL-LNNKVGSFKFIYVDVISEE 196 (361)
T ss_pred cccccccCCCCcccccchhhcccchhhccccCcccccccc-ccCcccccccceecccccc
Confidence 4555556654 5788999999999999998877889988 8899999988888765543
Done!