RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5076
(288 letters)
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 228 bits (583), Expect = 3e-74
Identities = 91/279 (32%), Positives = 142/279 (50%), Gaps = 14/279 (5%)
Query: 1 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDN-GAFLVRDSNTILGNYVLCVK---ENN 56
T FDP + S+YF M+R+EA +L + + G FL+RDS + G Y L V+ E N
Sbjct: 31 TTNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGN 89
Query: 57 KVSHYIINKITNTEQ---QTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPA-TKTIEK 112
V HY+I + E KI +++F D+P+LL +K+ L + L+ IE
Sbjct: 90 AVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEV 149
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSI 172
V+ + F G DLPF++ + L ++SK + WW A+N G G +P YVQ E +
Sbjct: 150 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQMEFHND 209
Query: 173 LSLRN-----LHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTALKLE 227
+ + + +T L+ +LPA A+V RVPNAYD T L+++
Sbjct: 210 RTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVK 269
Query: 228 IGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE 266
G + VT+ NG ++ EL+G+ G P T++ F +E
Sbjct: 270 KGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAVSE 308
Score = 36.0 bits (82), Expect = 0.010
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTNETSVETNGNGDIHNSTP 282
L E G+ +++ WE G TG P +V+ + G +
Sbjct: 164 LPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQMEFHNDRTSKGASQSSIGSS 223
Query: 283 KTETPT 288
Sbjct: 224 GGGAER 229
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 217 bits (552), Expect = 1e-69
Identities = 135/305 (44%), Positives = 177/305 (58%), Gaps = 34/305 (11%)
Query: 1 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
M G FD +R+SWY+G ++RQEA A+L ++ G FLVRDS+T G+YVL V EN++VSH
Sbjct: 1 MAGNFDSEERSSWYWGRLSRQEAVALLQGQRH-GVFLVRDSSTSPGDYVLSVSENSRVSH 59
Query: 61 YIINKI-------------TNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPAT 107
YIIN + +IGD+ F LP+LL FYK+HYLDT+ LI+P +
Sbjct: 60 YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS 119
Query: 108 KTI------------EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEV 155
++ E V A +DF+GND +DLPFKK DIL + K EE WW A++ G+
Sbjct: 120 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR 179
Query: 156 GSIPVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTP--------VRKTHLEVKLPAF 207
G IPVPYV+KY + +S SH P P P +
Sbjct: 180 GMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIY 239
Query: 208 ARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET 267
ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV +
Sbjct: 240 ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQNP 299
Query: 268 SVETN 272
+ +
Sbjct: 300 EEDFS 304
Score = 41.5 bits (96), Expect = 1e-04
Identities = 29/175 (16%), Positives = 46/175 (26%), Gaps = 8/175 (4%)
Query: 122 NDPDD--LPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLH 179
P D L +N + + S V + SL L
Sbjct: 42 TSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALL 101
Query: 180 LDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTA-----LKLEIGDIIKV 234
H++ + + + V +D L + GDI+++
Sbjct: 102 EFYKIHYLDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRI 161
Query: 235 TKTNINGQWEGE-LNGKTGHFPFTHVEFIPTNETSVETNGNGDIHNSTPKTETPT 288
W E GK G P +VE SV G+ S P+
Sbjct: 162 RDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGP 216
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 200 bits (508), Expect = 5e-63
Identities = 133/303 (43%), Positives = 171/303 (56%), Gaps = 41/303 (13%)
Query: 2 TGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
+ FD DR++WY G ++RQEAQ L ++ G FLVRDS+T G+YVL V EN++VSHY
Sbjct: 3 SARFDSSDRSAWYMGPVSRQEAQTRLQGQRH-GMFLVRDSSTCPGDYVLSVSENSRVSHY 61
Query: 62 IINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKT------------ 109
IIN + N +KIGD+ F LP+LL FYK+HYLDT+ LI+PA +
Sbjct: 62 IINSLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPN 117
Query: 110 -------IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPY 162
+E V YDF GND +DLPFKK +IL+++ K EE WW+A+N G VG IPVPY
Sbjct: 118 LPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPY 177
Query: 163 VQKYSEGMSILSLRNLHLDSS-----------------SHHVPQQQTTPVRKTHLEVKLP 205
V+K N + +S V + P
Sbjct: 178 VEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGP 237
Query: 206 AFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTN 265
FA+ Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+
Sbjct: 238 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ 297
Query: 266 ETS 268
Sbjct: 298 NPD 300
Score = 35.0 bits (79), Expect = 0.023
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Query: 216 PNAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFIPTNETSVETNGN 274
D L + G+I+ + + W +G+ G P +VE + + +
Sbjct: 134 FPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKHGNR 193
Query: 275 GDIHNSTPKTETP 287
P+
Sbjct: 194 NSNSYGIPEPAHA 206
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 150 bits (379), Expect = 2e-45
Identities = 61/169 (36%), Positives = 91/169 (53%), Gaps = 9/169 (5%)
Query: 4 TFDPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK---ENNKVS 59
FDP + S+YF M+R+EA +L + G FL+RDS+ G Y L V+ E N V
Sbjct: 5 GFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRP-GEYSLTVREADEGNAVC 63
Query: 60 HYIINKITNTEQQTC---YKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIE-KVIA 115
HY+I + E T KI +++F D+P+LL +K+ L + L+ K I V+
Sbjct: 64 HYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVG 123
Query: 116 KYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+ F G DLPF++ + L ++SK + WW A+N G G +P YVQ
Sbjct: 124 TFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQ 172
Score = 36.3 bits (83), Expect = 0.004
Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 6/79 (7%)
Query: 188 PQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQ 242
+R L A+ + V + T L E G+ +++
Sbjct: 94 ALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDW 153
Query: 243 WEGE-LNGKTGHFPFTHVE 260
WE G TG P +V+
Sbjct: 154 WEARNALGTTGLVPANYVQ 172
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 150 bits (379), Expect = 1e-44
Identities = 92/216 (42%), Positives = 122/216 (56%), Gaps = 26/216 (12%)
Query: 4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
FD +R+SWY+G ++RQEA A+L ++ G FLVRDS+T G+YVL V EN++VSHYII
Sbjct: 6 NFDSEERSSWYWGRLSRQEAVALLQGQRH-GVFLVRDSSTSPGDYVLSVSENSRVSHYII 64
Query: 64 NKITNTEQ-------------QTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPA---- 106
N + +IGD+ F LP+LL FYK+HYLDT+ LI+P
Sbjct: 65 NSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSR 124
Query: 107 --------TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI 158
+ E V A +DF+GND +DLPFKK DIL + K EE WW A++ G+ G I
Sbjct: 125 QGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMI 184
Query: 159 PVPYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTP 194
PVPYV+KY + +S SH P P
Sbjct: 185 PVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEP 220
Score = 40.3 bits (93), Expect = 3e-04
Identities = 23/129 (17%), Positives = 36/129 (27%), Gaps = 6/129 (4%)
Query: 166 YSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTA-- 223
SL L H++ + + + V +D
Sbjct: 90 RIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGND 149
Query: 224 ---LKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTNETSVETNGNGDIHN 279
L + GDI+++ W E GK G P +VE SV G+
Sbjct: 150 EEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSALIGGNQEG 209
Query: 280 STPKTETPT 288
S P+
Sbjct: 210 SHPQPLGGP 218
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 126 bits (317), Expect = 2e-35
Identities = 40/171 (23%), Positives = 80/171 (46%), Gaps = 10/171 (5%)
Query: 5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
+ + W+FG + R +A+ +L ++ +GAFL+R+S + G++ L VK N V H+ +
Sbjct: 52 YIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVL 111
Query: 65 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLD-----TSPLIKPATKTIEKVIAKYDF 119
+ + Y + F+ L L+ +++ + I+ + V A +DF
Sbjct: 112 R----DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDF 167
Query: 120 DGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
D + +L F++ D + V+ + +WW G+ G P YV + +
Sbjct: 168 DPQEDGELGFRRGDFIHVMDNSDPNWWKGAC-HGQTGMFPRNYVTPVNRNV 217
Score = 74.7 bits (183), Expect = 3e-16
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
+ IAKYDF D+L FK+ DIL V++++ + W ++G+ G IP Y++
Sbjct: 2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPH 58
Score = 34.7 bits (79), Expect = 0.021
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVEFIP 263
YD A L + GDI+KV + W + ELNGK G P ++E P
Sbjct: 7 YDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP 57
>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 111
Score = 120 bits (303), Expect = 1e-34
Identities = 57/104 (54%), Positives = 75/104 (72%), Gaps = 5/104 (4%)
Query: 5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
FD DR++WY G ++RQEAQ L ++ G FLVRDS+T G+YVL V EN++VSHYIIN
Sbjct: 13 FDSSDRSAWYMGPVSRQEAQTRLQGQRH-GMFLVRDSSTCPGDYVLSVSENSRVSHYIIN 71
Query: 65 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 108
+ N +KIGD+ F LP+LL FYK+HYLDT+ LI+PA +
Sbjct: 72 SLPNRR----FKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPR 111
>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein
binding/transferase complex; HET: PTR; NMR {Homo
sapiens} SCOP: d.93.1.1
Length = 109
Score = 115 bits (290), Expect = 8e-33
Identities = 51/110 (46%), Positives = 70/110 (63%), Gaps = 14/110 (12%)
Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK------ 65
SWY+G ++RQEA A+L ++ G FLVRDS+T G+YVL V EN++VSHYIIN
Sbjct: 1 SWYWGRLSRQEAVALLQGQRH-GVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPP 59
Query: 66 -------ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATK 108
+ +IGD+ F LP+LL FYK+HYLDT+ LI+P ++
Sbjct: 60 VPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR 109
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 119
Score = 108 bits (272), Expect = 7e-30
Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
DPH+ W+ G +++QEA +L++ +FLVR S+ G+Y L + N + + I
Sbjct: 11 DPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICP 70
Query: 66 ITNTEQQTCYKIGDKTFSDLPSLLAFYKVH-YLDTSPLIKPATK 108
N + + +G + ++ + ++ Y+ ++ L +P
Sbjct: 71 TPNNQ----FMMGGRYYNSIGDIIDHYRKEQIVEGYYLKEPVPM 110
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein;
1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Length = 105
Score = 104 bits (262), Expect = 1e-28
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 8 HDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKI 66
H W+ G ++R+E+ I+ + +G FL+RDS + +VL + + K+ ++ I
Sbjct: 2 HRTQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPC 61
Query: 67 TNTEQQTCYKI--GDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
+ + QT + + G+ FSDL L+ FY+++ L L +
Sbjct: 62 ED-DGQTFFSLDDGNTKFSDLIQLVDFYQLNKGVL-PCKLKHHCIR 105
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine,
tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo
sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A
Length = 117
Score = 103 bits (260), Expect = 3e-28
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
H W+ G ++R+E+Q ++ + +G FLVR+S +VL + KV HY+I
Sbjct: 9 AIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHLQKVKHYLIL 68
Query: 65 KITNTEQQTCYKI--GDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
E + + + G F+DL L+ F++++ L L T+
Sbjct: 69 PSEE-EGRLYFSMDDGQTRFTDLLQLVEFHQLNRGIL-PCLLRHCCTR 114
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide,
peptide binding protein; HET: PTR; 1.80A {Mus musculus}
SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Length = 100
Score = 101 bits (255), Expect = 1e-27
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYI 62
G+F + W+ ++R +A+ LL KD G F++R S + G++ + V+ + V H+
Sbjct: 1 GSFIDIEFPEWFHEGLSRHQAEN-LLMGKDIGFFIIRASQSSPGDFSISVRHEDDVQHFK 59
Query: 63 INKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
+ + T Y + + F L L+ +Y+
Sbjct: 60 VMRDTKGN----YFLWTEKFPSLNKLVDYYRTT 88
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation,
binding specificity; HET: PTR MPD; 1.45A {Homo sapiens}
PDB: 1z3k_A 2ci9_A* 2ci8_A*
Length = 102
Score = 101 bits (254), Expect = 2e-27
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
WY+G +TR +A+ L G FL+RDS + ++ + +K + K H+ + + N
Sbjct: 7 WYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNV--- 63
Query: 73 TCYKIGDKTFSDLPSLLAFYKVHYLDTSP 101
Y IG + F + L+ YK + TS
Sbjct: 64 --YCIGQRRFHTMDELVEHYKKAPIFTSE 90
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2
domain, signaling protein; 2.30A {Homo sapiens}
Length = 126
Score = 101 bits (254), Expect = 3e-27
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
H W+ ++R EAQ +++ +G FLVRDS + +VL + K+ H+ I
Sbjct: 21 MIHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHGQKIKHFQII 80
Query: 65 KITNTEQ-QTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
+ + + G F+DL L+ FY+++ L L +
Sbjct: 81 PVEDDGEMFHTLDDGHTRFTDLIQLVEFYQLNKGVLPC-KLKHYCAR 126
>1jyr_A Growth factor receptor-bound protein 2; receptor binding,
regulatory, inhibitor, signaling protein-I complex;
HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB:
1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A*
1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Length = 96
Score = 99.2 bits (248), Expect = 1e-26
Identities = 23/84 (27%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
+W+FG + R +A+ +L ++ +GAFL+R+S + G++ L VK N V H+ + + +
Sbjct: 4 AWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR----DG 59
Query: 72 QTCYKIGDKTFSDLPSLLAFYKVH 95
Y + F+ L L+ +++
Sbjct: 60 AGKYFLWVVKFNSLNELVDYHRST 83
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain,
signaling protein, structural genomics, joint CE
structural genomics, JCSG; 1.50A {Homo sapiens} PDB:
1jwo_A
Length = 98
Score = 98.4 bits (246), Expect = 3e-26
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
W+ G ++ QEA L +D G FLVR+S G+YVLCV V HY +
Sbjct: 7 WFHGKISGQEAVQQLQPPED-GLFLVRESARHPGDYVLCVSFGRDVIHYRVLH----RDG 61
Query: 73 TCYKIGDKTFSDLPSLLAFYKVHYL-DTSPLIKPATK 108
F +L ++ Y + L++P K
Sbjct: 62 HLTIDEAVFFCNLMDMVEHYSKDKGAICTKLVRPKRK 98
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding
domain, protein tyrosine kinase, signal transduction,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 98.9 bits (247), Expect = 3e-26
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
+ +++SWY G ++R A+ LLS NG+FLVR+S + G + ++ +V HY +
Sbjct: 11 NSLEKHSWYHGPVSRSAAEY-LLSSLINGSFLVRESESSPGQLSISLRYEGRVYHY---R 66
Query: 66 ITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
I T Y + FS L L+ + L T+ L PA K
Sbjct: 67 INTTADGKVYVTAESRFSTLAELVHHHSTVADGLVTT-LHYPAPK 110
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development,
SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; NMR {Homo sapiens}
Length = 116
Score = 97.4 bits (243), Expect = 9e-26
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
P WY G + R EAQ +L K G FLVR+S+ G YVL V + + H+II
Sbjct: 10 HMKPLAEQDWYHGAIPRIEAQELL---KKQGDFLVRESHGKPGEYVLSVYSDGQRRHFII 66
Query: 64 NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL-----DTSPLIKPATKT 109
+ N Y+ FS++P L+ + L+ P K
Sbjct: 67 QYVDNM-----YRFEGTGFSNIPQLIDHHYTTKQVITKKSGVVLLNPIPKD 112
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6
(PTK6/BRK), SRC homology 2(S domain, solution structure,
backbone dynamics, transferase; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 100
Score = 96.5 bits (241), Expect = 1e-25
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 13 WYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
W+FG ++R EA L +E GAFL+R S +YVL V++ V HY I +
Sbjct: 4 WFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAG--- 60
Query: 72 QTCYKIGDK-TFSDLPSLLAFYKVHYL-DTSPLIKPATK 108
+ + +F LP L+ +++ L L P K
Sbjct: 61 -GRLHLNEAVSFLSLPELVNYHRAQSLSHGLRLAAPCRK 98
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 96.9 bits (242), Expect = 2e-25
Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 11/111 (9%)
Query: 5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
+ W+ G M RQ+ LL +G +L+R+ + + +K N++V H +
Sbjct: 10 EIDYTAYPWFAGNMERQQTDN-LLKSHASGTYLIRERPAEAERFAISIKFNDEVKHIKVV 68
Query: 65 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS------PLIKPATKT 109
+ + + K F L L+ +Y+ H L S L P +
Sbjct: 69 E----KDNWIHITEAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYPYSGP 115
>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex
(phosphotransferase/receptor), phosphotransferase, SH2
domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1
PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A
Length = 112
Score = 96.2 bits (240), Expect = 2e-25
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 11/108 (10%)
Query: 8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT 67
HD +W G R +A+ +L ++D G FLVR+S+ G Y V + +V H +INK
Sbjct: 7 HDEKTWNVGSSNRNKAENLLRGKRD-GTFLVRESSKQ-GCYACSVVVDGEVKHCVINK-- 62
Query: 68 NTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS------PLIKPATKT 109
T + +S L L+ Y+ L L P
Sbjct: 63 -TATGYGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYAQ 109
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 94.1 bits (235), Expect = 3e-25
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
E V A +DF+GND +DLPFKK DIL + K EE WW A++ G+ G IPVPYV+KY
Sbjct: 2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57
Score = 38.7 bits (91), Expect = 8e-05
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVE 260
N D+ L + GDI+++ W E GK G P +VE
Sbjct: 11 NGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain,
phosphotyrosine binding, signaling protein, signaling
protein-antagonist complex; HET: PTR; 1.60A {Homo
sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A*
3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A*
2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A*
1fyr_A* ...
Length = 117
Score = 95.8 bits (239), Expect = 4e-25
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
W+FG + R +A+ +L ++ +GAFL+R+S + G++ L VK N V H+ + + + +
Sbjct: 8 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLR--DGAGK 65
Query: 73 TCYKIGDKTFSDLPSLLAFYKVHYLDTS-----PLIKPATKT 109
Y + F+ L L+ +++ + + I+ +
Sbjct: 66 --YFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQ 105
>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform;
adapter protein, signaling protein; 2.00A {Mus
musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C*
Length = 111
Score = 95.5 bits (238), Expect = 4e-25
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 3 GTFDPHDRNSWYFGMMTRQEAQAILL--SEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
G+ P W+ GM++R +A ++L +G FLVR S T G VL K H
Sbjct: 1 GSDQPLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNFQGKAKH 60
Query: 61 YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL 97
++ N Q ++ F + +L ++VH +
Sbjct: 61 LRLSL--NAAGQ--CRVQHLHFQSIFDMLEHFRVHPI 93
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine
kinase, signal transduction, peptide recognition,
signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1
PDB: 1d1z_A 1d4w_A* 1m27_A*
Length = 104
Score = 94.7 bits (236), Expect = 8e-25
Identities = 24/104 (23%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
D + Y G ++R+ + +LL+ +G++L+RDS ++ G Y LCV + + Y +++
Sbjct: 2 DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTET 61
Query: 69 TEQ--QTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
+T + + F + +L++ ++ + PL P K
Sbjct: 62 GSWSAETAPGVHKRYFRKIKNLISAFQKPDQGIVI-PLQYPVEK 104
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 93.5 bits (233), Expect = 9e-25
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
T E+ IA DF DL FKK +IL+V+ K + WW A++ G G +P Y++ YSE
Sbjct: 9 TGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYSE 68
Score = 36.9 bits (86), Expect = 5e-04
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEG-ELNGKTGHFPFTHVE 260
D TA L + G+I+ V + +G W + G G P T++E
Sbjct: 17 GDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLE 64
>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 121
Score = 95.0 bits (237), Expect = 9e-25
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 5/106 (4%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
W+FG + R +A+ LL E GAFL+R+S + G++ L V + V HY
Sbjct: 11 RSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHY--- 67
Query: 65 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLD-TSPLIKPATKT 109
+I ++ + K FS L + +Y L KP K
Sbjct: 68 RIRRLDEGGFFLTRRKVFSTLNEFVNYYTTTSDGLCVKLEKPCLKI 113
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced,
ATP-binding, cell membrane, cytoplasm, membrane,
nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens}
PDB: 3eac_A
Length = 106
Score = 94.2 bits (235), Expect = 1e-24
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT 67
W+ G +TR++A+ +L + G FLVR+S G+Y LCV + KV HY +I
Sbjct: 5 LSLMPWFHGKITREQAERLLYPPET-GLFLVRESTNYPGDYTLCVSSDGKVEHY---RIM 60
Query: 68 NTEQQTCYKIGDK-TFSDLPSLLAFYKVH--YLDTSPLIKPATKTIEKVIA 115
+ I ++ F +L L+ Y L T LIKP E +A
Sbjct: 61 YHASK--LSIDEEVYFENLMQLVEHYTSDADGLCT-RLIKPKVM--EGTVA 106
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 92.8 bits (231), Expect = 1e-24
Identities = 40/64 (62%), Positives = 47/64 (73%)
Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 264
P FA+ Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+
Sbjct: 1 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP 60
Query: 265 NETS 268
Sbjct: 61 QNPD 64
Score = 59.3 bits (144), Expect = 5e-12
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
K I K D L + DI+ V + W + ++G G P +V+ +
Sbjct: 5 KAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGE-VNGRKGLFPFTHVKIFDP 60
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune
system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB:
1ka7_A
Length = 128
Score = 94.8 bits (236), Expect = 1e-24
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Query: 9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
D + Y G ++R+ + +LL+ +G++L+RDS ++ G Y LCV + + Y +++
Sbjct: 2 DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTET 61
Query: 69 TEQ--QTCYKIGDKTFSDLPSLLAFYKVHYLD--TSPLIKPATKTIEKVIAKYDFDGNDP 124
+T + + F + +L++ ++ PL P K + +
Sbjct: 62 GSWSAETAPGVHKRYFRKIKNLISAFQ-KPDQGIVIPLQYPVEKKSSARSTQGTTGIRED 120
Query: 125 DDLPFKK 131
D+ K
Sbjct: 121 PDVCLKA 127
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine
signal transduction lymphocyte, signaling protein; HET:
PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Length = 103
Score = 93.5 bits (233), Expect = 2e-24
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE-- 70
+Y G +T++E +A+LL +G FL+RDS ++ G LCV V Y I + +
Sbjct: 5 YYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYR 64
Query: 71 QQTCYKIGDKTFSDLPSLLAFYKVH 95
+T F +L L++ Y
Sbjct: 65 IETDAHTPRTIFPNLQELVSKYGKP 89
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 93.3 bits (232), Expect = 2e-24
Identities = 41/69 (59%), Positives = 49/69 (71%)
Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 264
P FA+ Q RVP AYDKTAL LE+GDI+KVT+ NINGQWEGE+NG+ G FPFTHV+
Sbjct: 16 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP 75
Query: 265 NETSVETNG 273
+G
Sbjct: 76 QNPDENESG 84
Score = 64.0 bits (156), Expect = 1e-13
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
K I K D L + DI+ V + W + ++G G P +V+
Sbjct: 13 QNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGE-VNGRKGLFPFTHVK 71
Query: 165 KYSE 168
+
Sbjct: 72 IFDP 75
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain,
protein protein interactions, PTR residues, HYDR peptide
complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A*
1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Length = 109
Score = 93.5 bits (233), Expect = 2e-24
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
W+ +T EA+ +LL+ +G+FL R S + G++ L V+ N V+H KI NT
Sbjct: 9 WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHI---KIQNTGDY 65
Query: 73 TCYKI-GDKTFSDLPSLLAFYKVHYLDTS-------PLIKPATKT 109
Y + G + F+ L L+ +Y H+ L P
Sbjct: 66 --YDLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCA 108
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 119
Score = 93.6 bits (233), Expect = 3e-24
Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYI 62
G W+ G ++R++A+ +L S+ G+FL+R S++ +G Y L K + H+
Sbjct: 8 GQLAQDGVPEWFHGAISREDAENLLESQPL-GSFLIRVSHSHVG-YTLSYKAQSSCCHF- 64
Query: 63 INKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVHYLDTSP--LIKPATK 108
+ + T G+K + L +L+ F++ ++ L +P +
Sbjct: 65 --MVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKPIEPRRELLTQPCRQ 111
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 91.9 bits (229), Expect = 3e-24
Identities = 33/60 (55%), Positives = 42/60 (70%)
Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
+ E V A +DF+GND +DLPFKK DIL + K EE WW A++ G+ G IPVPYV+KY
Sbjct: 2 SAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHH 61
Score = 39.9 bits (94), Expect = 3e-05
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTN 265
N D+ L + GDI+++ W E GK G P +VE +
Sbjct: 13 NGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHHH 62
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth
regulation, transforming protein, alternative
initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB:
1tce_A*
Length = 104
Score = 93.1 bits (232), Expect = 4e-24
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 14/104 (13%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
W+ G ++R+EA+A+L + NG FLVR+S T G YVL ++ + H ++ + +
Sbjct: 9 WFHGKLSRREAEALL---QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLL-----VDPE 60
Query: 73 TCYKIGDKTFSDLPSLLAFYKVHYLDTSP------LIKPATKTI 110
+ D F + L++++ ++L L +P + +
Sbjct: 61 GVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVERKL 104
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 91.6 bits (228), Expect = 4e-24
Identities = 41/62 (66%), Positives = 49/62 (79%)
Query: 205 PAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 264
P +ARV Q RVPNAYDKTAL LE+G+++KVTK N++GQWEGE NGK GHFPFTHV +
Sbjct: 6 PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQ 65
Query: 265 NE 266
Sbjct: 66 QN 67
Score = 58.9 bits (143), Expect = 6e-12
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 113 VIAKYDFDGN--DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
N D L + +++ V + W + +G+ G P +V+ +
Sbjct: 9 ARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGE-CNGKRGHFPFTHVRLLDQ 65
>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*
Length = 138
Score = 93.2 bits (232), Expect = 8e-24
Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 11/109 (10%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
+ WY G M R A++ +L+ + +G FLVR + + +K N +V H I
Sbjct: 21 QDLSVHLWYAGPMERAGAES-ILANRSDGTFLVRQRVKDAAEFAISIKYNVEVKHIKIMT 79
Query: 66 ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS------PLIKPATK 108
+ K F L L+ FY+ + L L P +
Sbjct: 80 ----AEGLYRITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKE 124
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 119
Score = 92.4 bits (230), Expect = 8e-24
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
W G +TR +A+ +L +G+FLVR S +I Y LCV N V Y I + +
Sbjct: 11 CWNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKF 70
Query: 72 --QTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
Q + + F+ L L+ FYK L T L P
Sbjct: 71 TVQASEGVSMRFFTKLDQLIEFYKKENMGLVT-HLQYPVPL 110
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 90.4 bits (225), Expect = 1e-23
Identities = 19/64 (29%), Positives = 36/64 (56%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+T ++KV+A YD+ + +DL +K D ++ + WW A++ +G+ G IP YV
Sbjct: 3 MSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVT 62
Query: 165 KYSE 168
+ +
Sbjct: 63 EAED 66
Score = 30.3 bits (69), Expect = 0.090
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVE 260
YD L+L GD + + + W NG+ G+ P +V
Sbjct: 15 YDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVT 62
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 93.9 bits (233), Expect = 2e-23
Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 33/171 (19%)
Query: 101 PLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPV 160
PL P ++ A D++ ++ D++ VV K E WW Q + G IP
Sbjct: 2 PLGSPEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQM-KAKRGWIPA 60
Query: 161 PYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYD 220
+++ P+ + AY
Sbjct: 61 SFLE-----------------------------PLDSPDETEDPEPNYAGEPYVAIKAYT 91
Query: 221 KTA---LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
+ L G+ ++V ++G W + TG+FP +++ + +
Sbjct: 92 AVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVSQ 142
Score = 62.7 bits (152), Expect = 4e-12
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
Query: 93 KVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS 152
+ E +A + + D++ + + + V+ K + WW
Sbjct: 64 EPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVI-RKD 122
Query: 153 GEVGSIPVPYVQKYSEGMS 171
G P Y+QK + +S
Sbjct: 123 DVTGYFPSMYLQKSGQDVS 141
Score = 49.2 bits (117), Expect = 2e-07
Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 205 PAFARVKQVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEF 261
P F ++ R Y+KT+ + L GD+++V + + +G W ++ K G P + +E
Sbjct: 6 PEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEP 65
Query: 262 IPTNETSVETNGNG 275
+ + + + + N
Sbjct: 66 LDSPDETEDPEPNY 79
>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70,
tyrosine kinase, transferase; HET: PTR; 1.90A {Homo
sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A
Length = 254
Score = 95.0 bits (236), Expect = 2e-23
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
DP +++G ++R EA+ L +G FL+R LG YVL + + + H+
Sbjct: 1 DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHF--- 57
Query: 65 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
I T G K L FY
Sbjct: 58 PIERQLNGTYAIAGGKAHCGPAELCEFYSRD 88
Score = 83.0 bits (205), Expect = 6e-19
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 1 MTGTFDPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVS 59
H+R WY +TR+EA+ L S + +G FL+R G Y L + V
Sbjct: 149 KLIATTAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKE-QGTYALSLIYGKTVY 207
Query: 60 HYIINKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVH 95
HY+I++ ++ Y I + F L L+ + K+
Sbjct: 208 HYLISQ----DKAGKYCIPEGTKFDTLWQLVEYLKLK 240
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding
protein, antibody mimic, protein-protein SH2 domain,
ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB:
3uyo_A 3t04_A 1ab2_A
Length = 112
Score = 90.4 bits (225), Expect = 4e-23
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 9 DRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITN 68
+++SWY G ++R A+ LLS NG+FLVR+S + G + ++ +V HY +I
Sbjct: 3 EKHSWYHGPVSRNAAEY-LLSSGINGSFLVRESESSPGQRSISLRYEGRVYHY---RINT 58
Query: 69 TEQQTCYKIGDKTFSDLPSLLAFYKVH 95
Y + F+ L L+ +
Sbjct: 59 ASDGKLYVSSESRFNTLAELVHHHSTV 85
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2;
SH2, phosphoinositide phospholipase C, PLC-gamma-2,
phospholipase C-gamma-2; NMR {Rattus norvegicus}
Length = 124
Score = 90.4 bits (225), Expect = 6e-23
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
+PH+ WY+ ++R EA+ +L+ +GAFL+R +Y + + KV H IN+
Sbjct: 14 NPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGT-DSYAITFRARGKVKHCRINR 72
Query: 66 ITNTEQQTCYKIGDK-TFSDLPSLLAFYKVH--YLDTSPLIKPATKTIE 111
+ +G F L L+++Y+ H Y L P T +
Sbjct: 73 -----DGRHFVLGTSAYFESLVELVSYYEKHALYRKMR-LRYPVTPELL 115
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 87.7 bits (218), Expect = 2e-22
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK--DEEHWWTAQNISGEVGSIPVPYV 163
++ + V Y F ++L F+K + + V+ K ++ WW +N G+VG +P YV
Sbjct: 2 GSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 61
Query: 164 QKYSEGMSI 172
S+G ++
Sbjct: 62 VVLSDGPAL 70
Score = 36.1 bits (84), Expect = 9e-04
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 219 YDKTA-----LKLEIGDIIKV-TKTNINGQW-EGE-LNGKTGHFPFTHVEFIPTNE 266
Y ++ L E G+ ++V K + +W + + G+ G P +V +
Sbjct: 13 YPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGP 68
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 87.3 bits (217), Expect = 2e-22
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 103 IKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVP 161
I+ + + + IAKY+F G DLPF K D+L +V+ + +W+ A+N G G IP
Sbjct: 4 IQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPAN 63
Query: 162 YVQKY 166
YVQK
Sbjct: 64 YVQKR 68
Score = 30.3 bits (69), Expect = 0.11
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 229 GDIIKVTKTNINGQW-EGEL-NGKTGHFPFTHVE 260
GD++ + + W + + G+ G P +V+
Sbjct: 33 GDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQ 66
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain,
signal transduction inhibitor nuclear protein; 1.9A
{Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Length = 169
Score = 90.3 bits (224), Expect = 2e-22
Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 4/116 (3%)
Query: 1 MTGTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSH 60
+ + WY+G MT EA+ L + G FL+RDS+ + VK + ++
Sbjct: 7 LAKALRELGQTGWYWGSMTVNEAKEKLKEAPE-GTFLIRDSSHSDYLLTISVKTSAGPTN 65
Query: 61 YIINKITNT---EQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKV 113
I + C K K F + L+ +Y D + +
Sbjct: 66 LRIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHL 121
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 86.5 bits (215), Expect = 3e-22
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
E V+A YDF + DL ++ I++ K++ HWW A++ G G IP YV
Sbjct: 3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKS 60
Score = 32.6 bits (75), Expect = 0.018
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTNE 266
YD A L+LE G + + N W G G+ P +V +N
Sbjct: 9 YDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSNN 62
>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition,
tandem SH2 domains, A analog, ATP-binding,
craniosynostosis, disease mutation; HET: PTR DVT ACP;
2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A*
Length = 226
Score = 91.1 bits (226), Expect = 4e-22
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 5 FDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
+ H+ WY +TR +A+ +L+ +GAFLVR N +Y + + K+ H +
Sbjct: 116 TNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEP-NSYAISFRAEGKIKHCRVQ 174
Query: 65 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL-DTSPLIKPATKTIEKVIAKYDFD 120
+ + +G+ F L L+++Y+ H L L P + + I + D
Sbjct: 175 Q-----EGQTVMLGNSEFDSLVDLISYYEKHPLYRKMKLRYPINEEALEKIGTAEPD 226
Score = 85.0 bits (210), Expect = 7e-20
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 8 HDRNSWYFGMMT-----RQEAQAILLSE-----KDNGAFLVRDSNTILGNYVLCVKENNK 57
H W+ G + R A+ +L +G+FLVR+S T +G+Y L N K
Sbjct: 1 HSSEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGK 60
Query: 58 VSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPL 102
V H I+ + + + F L L+ Y+ L +
Sbjct: 61 VQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCNEF 105
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS
proline, domain swapped dimer, SH transferase; HET: CIT;
2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A
1lum_A 1lun_A 2k79_B 2k7a_B
Length = 118
Score = 87.8 bits (218), Expect = 4e-22
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 3 GTFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK------ENN 56
G+ + + WY ++R +A+ +LL GAF+VRDS T G Y + V EN
Sbjct: 1 GSPNNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRT-PGTYTVSVFTKAIISENP 59
Query: 57 KVSHYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
+ HY I K TN + Y F +P L+ +++ + L T L P
Sbjct: 60 CIKHYHI-KETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGGGLVT-RLRYPVCG 111
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 85.9 bits (213), Expect = 6e-22
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 203 KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
ARV P+ YD +LKL+ GDII + G W G LN K G F F +V+ +
Sbjct: 7 GFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVL 66
Query: 263 PTNETS 268
+ +S
Sbjct: 67 SSGPSS 72
Score = 59.0 bits (143), Expect = 6e-12
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169
+V + D D L KK DI+ ++SK W ++ +VG+ YV S G
Sbjct: 13 RVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGL-LNNKVGTFKFIYVDVLSSG 69
>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2
domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1
d.93.1.1 PDB: 1csy_A* 1csz_A*
Length = 254
Score = 90.7 bits (225), Expect = 8e-22
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 13 WYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
++FG +TR+EA+ L+ +G +L+R S LG + L V K HY I
Sbjct: 7 FFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRKAHHY---TIERELN 63
Query: 72 QTCYKIGDKTFSDLPSLLAFYKVH 95
T G +T + L ++
Sbjct: 64 GTYAIAGGRTHASPADLCHYHSQE 87
Score = 83.4 bits (206), Expect = 4e-19
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 5 FDPHDRNSWYFGMMTRQEAQAILLSE-KDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
H++ W+ G ++R+E++ I+L K NG FL+R + G+Y LC+ KV HY I
Sbjct: 152 TTAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDNN-GSYALCLLHEGKVLHYRI 210
Query: 64 NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
+K + K F L L+ Y L L P K
Sbjct: 211 DK---DKTGKLSIPEGKKFDTLWQLVEHYSYKADGLLR-VLTVPCQK 253
>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.50A {Mus musculus}
Length = 138
Score = 87.6 bits (217), Expect = 8e-22
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 6 DPHDRNSWYFG-MMTRQEAQAILLSEKD-----NGAFLVRDSNTILGNYVLCVKENNKVS 59
+ H W+ + +R A+ +L +G FLVR+S T +Y L + +V
Sbjct: 17 ELHFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQ 76
Query: 60 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLI 103
H I Y + TF+ + +L+ Y+ +L +
Sbjct: 77 HCRIRSTMENGVMKYYLTDNLTFNSIYALIQHYREAHLRCAEFE 120
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 85.5 bits (212), Expect = 1e-21
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
VIA YD+ NDP +L + ++ ++ E HWW Q+ +G G P Y+
Sbjct: 15 FQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 74
Query: 165 KYS 167
+ S
Sbjct: 75 EKS 77
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 85.5 bits (212), Expect = 1e-21
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
VIA YD+ NDP +L ++N+ ++ E HWW Q+ +G G +P Y+ + S
Sbjct: 20 TVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSP 77
Score = 29.3 bits (66), Expect = 0.40
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 6/58 (10%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTNETSVE 270
YD L L + + ++ W + NG G+ P +++ N
Sbjct: 26 YDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSPNNLETY 83
>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase,
phosphotransferase, phosphorylation; NMR {Mus musculus}
SCOP: d.93.1.1 PDB: 1blk_A
Length = 114
Score = 86.2 bits (214), Expect = 2e-21
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVK----ENNKVSH 60
+ + W+F ++R++A+ LL+ + G+FL+R+S + G + L VK + V H
Sbjct: 7 ETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKH 66
Query: 61 YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYK------VHYLDTSPLIKPA 106
Y KI + + Y TF L +L+ Y L T P + A
Sbjct: 67 Y---KIRSLDNGGYYISPRITFPTLQALVQHYSKKGDGLCQKL-TLPCVNLA 114
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 85.6 bits (212), Expect = 2e-21
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 98 DTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE--HWWTAQNISGEV 155
+ ++ + V Y F ++L F+K + + V+ K E WW +N G+V
Sbjct: 5 SSGLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQV 64
Query: 156 GSIPVPYVQKYSEG 169
G +P YV S+G
Sbjct: 65 GLVPKNYVVVLSDG 78
Score = 36.3 bits (84), Expect = 0.001
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 10/78 (12%)
Query: 205 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVT-KTNINGQW-EGE-LNGKTGHFPF 256
+ V+ Y ++ L E G+ ++V K + +W + + G+ G P
Sbjct: 12 QGSRVLHVVQT--LYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPK 69
Query: 257 THVEFIPTNETSVETNGN 274
+V + +
Sbjct: 70 NYVVVLSDGPALHPAHSG 87
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor,
growth regulation, signal transduction, SH2 domain,
nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1
d.93.1.1
Length = 187
Score = 86.9 bits (215), Expect = 6e-21
Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 13/136 (9%)
Query: 4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
+ N Y+G+M + A+A+L + + G FL+RDS + + + ++ H I
Sbjct: 27 DLLQINNNPCYWGVMDKYAAEALLEGKPE-GTFLLRDSAQEDYLFSVSFRRYSRSLHARI 85
Query: 64 NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH-------YLDTSPLIKPATKTIE----K 112
+ + + D+ LL YK L ++PLI+ +++
Sbjct: 86 EQWNHNFSFDAHDPCVFHSPDITGLLEHYKDPSACMFFEPLLSTPLIRTFPFSLQHICRT 145
Query: 113 VIAKYDFDGNDPDDLP 128
VI + D LP
Sbjct: 146 VICNC-TTYDGIDALP 160
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction,
peptide complex, complex (proto-oncogene/early protein);
HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*
Length = 106
Score = 84.2 bits (209), Expect = 8e-21
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVK-----ENNKVSHYIINKI 66
WYFG + R++A+ LLS G FL+R+S T G Y L ++ + + V HY KI
Sbjct: 7 WYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHY---KI 63
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
+ Y F L L+ Y L + L+ P+ K
Sbjct: 64 RKLDNGGYYITTRAQFETLQQLVQHYSERAAGLSS-RLVVPSHK 106
>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase;
NMR {Homo sapiens}
Length = 125
Score = 84.3 bits (209), Expect = 1e-20
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 13/112 (11%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK------ENNKVS 59
D + WY MTR +A+ +L E G F+VRDS+ G Y + V +
Sbjct: 6 DSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDSSK-AGKYTVSVFAKSTGDPQGVIR 64
Query: 60 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATKT 109
HY + +T Q Y FS +P L+ +++ + L + L P ++
Sbjct: 65 HY---VVCSTPQSQYYLAEKHLFSTIPELINYHQHNSAGLIS-RLKYPVSQQ 112
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide);
HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB:
1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A*
1cwd_L* 1cwe_A*
Length = 105
Score = 83.1 bits (206), Expect = 2e-20
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 13 WYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNK-----VSHYIINKI 66
W+F ++R++A+ LL+ +G+FL+R+S + G++ L V++ ++ V HY KI
Sbjct: 6 WFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHY---KI 62
Query: 67 TNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
N + Y TF L L+ Y
Sbjct: 63 RNLDNGGFYISPRITFPGLHELVRHYTNA 91
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 125
Score = 83.9 bits (208), Expect = 2e-20
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVS 59
+ WY +TR +A+ +L E GAF+VRDS LG+Y + V +
Sbjct: 11 TNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSRH-LGSYTISVFMGARRSTEAAIK 69
Query: 60 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKPATK 108
HY +I + Y F +P L+ +++ + L T L P
Sbjct: 70 HY---QIKKNDSGQWYVAERHAFQSIPELIWYHQHNAAGLMT-RLRYPVGL 116
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 110
Score = 83.1 bits (206), Expect = 2e-20
Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCV------KENNKVS 59
D W+ G ++R +++ +L + GAF+VR+S+ + G Y + + + V
Sbjct: 6 SGLDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSSQV-GMYTVSLFSKAVNDKKGTVK 64
Query: 60 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH--YLDTSPLIKP 105
HY + + Y + F +P L+ +++ + + T L P
Sbjct: 65 HY---HVHTNAENKLYLAENYCFDSIPKLIHYHQHNSAGMITR-LRHP 108
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2
domain, feline sarcoma oncogene, structural genomics;
NMR {Homo sapiens} PDB: 2dcr_A
Length = 114
Score = 83.2 bits (206), Expect = 3e-20
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
P WY G + R E +L +G FLVR+S YVL V + H+II
Sbjct: 11 KPLHEQLWYHGAIPRAEVAELL---VHSGDFLVRESQGK-QEYVLSVLWDGLPRHFIIQS 66
Query: 66 ITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
+ N Y++ + F +P L+
Sbjct: 67 LDN-----LYRLEGEGFPSIPLLIDHLLST 91
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2
subdomain, PEST motif, protein complex, cytokine
regulator; HET: PTR; NMR {Mus musculus}
Length = 164
Score = 83.5 bits (206), Expect = 6e-20
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
+ +Y+ +T EA +L +E G FL+RDS+ + L VK + + I
Sbjct: 16 AVRKLQESGFYWSAVTGGEANLLLSAEPA-GTFLIRDSSDQRHFFTLSVKTQSGTKNLRI 74
Query: 64 NKITNT---EQQTCYKIGDKTFSDLPSLLAFYK 93
+ + F + L+ Y
Sbjct: 75 QCEGGSFSLQSDPRSTQPVPRFDCVLKLVHHYM 107
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 86.3 bits (213), Expect = 7e-20
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
H+ +WY G + R +A+ +LS K +G FL+R+S+ G Y V + H +I +
Sbjct: 189 PHHEERTWYVGKINRTQAEE-MLSGKRDGTFLIRESSQR-GCYACSVVVDGDTKHCVIYR 246
Query: 66 ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS 100
T + + L L+ Y+ L
Sbjct: 247 ---TATGFGFAEPYNLYGSLKELVLHYQHASLVQH 278
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 87.5 bits (217), Expect = 1e-19
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 8/126 (6%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
WY G ++R A+ LLS NG+FLVR+S + G + ++ +V HY IN ++
Sbjct: 107 WYHGPVSRNAAEY-LLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASD---G 162
Query: 73 TCYKIGDKTFSDLPSLLAFYKVHYLD-TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKK 131
Y + F+ L L+ + + L PA K + I + D ++
Sbjct: 163 KLYVSSESRFNTLAELVHHHSTVADGLITTLHYPAPKRNKPTIYG---VSPNYDKWEMER 219
Query: 132 NDILIV 137
DI +
Sbjct: 220 TDITMK 225
Score = 68.6 bits (168), Expect = 3e-13
Identities = 14/69 (20%), Positives = 25/69 (36%)
Query: 99 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI 158
+ L P+ +A YDF + + L K + L V+ + W G +
Sbjct: 32 ENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWV 91
Query: 159 PVPYVQKYS 167
P Y+ +
Sbjct: 92 PSNYITPVN 100
>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit;
transferase, polymorphism, UBL conjugation,
phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo
sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A
1oo4_A* 2pna_A 2pnb_A
Length = 120
Score = 80.8 bits (200), Expect = 2e-19
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 14/123 (11%)
Query: 4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNT-ILGNYVLCVKENNKVSHYI 62
WY+G ++R+E L D G FLVRD++T + G+Y L +++
Sbjct: 4 NNMSLQNAEWYWGDISREEVNEKLRDTAD-GTFLVRDASTKMHGDYTLTLRKGGNNKLIK 62
Query: 63 INKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVHYLDTS------PLIKPATKTIEKVIA 115
I + Y D TFS + L+ Y+ L L+ P +K + +
Sbjct: 63 IFH-----RDGKYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQVV 117
Query: 116 KYD 118
K D
Sbjct: 118 KED 120
>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide
complex, cytokine regulator; HET: PTR; 2.00A {Mus
musculus}
Length = 152
Score = 81.9 bits (202), Expect = 2e-19
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
+ +Y+ +T EA +L +E G FL+RDS+ + L VK + + I
Sbjct: 27 AVRKLQESGFYWSAVTGGEANLLLSAEPA-GTFLIRDSSDQRHFFTLSVKTQSGTKNLRI 85
Query: 64 NKITNT---EQQTCYKIGDKTFSDLPSLLAFYK 93
+ + F + L+ Y
Sbjct: 86 QXEGGSFSLQSDPRSTQPVPRFDXVLKLVHHYM 118
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 79.7 bits (197), Expect = 2e-19
Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 99 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQ-NISGEVG 156
+ + + I K + P +L F+K D++ ++ E + W+ + + SG+ G
Sbjct: 6 SGRMPTRRWAPGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEG 65
Query: 157 SIPVPYVQKYSEGMS 171
+ +++ S S
Sbjct: 66 LLAAGALRERSGPSS 80
Score = 32.4 bits (74), Expect = 0.024
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 229 GDIIKVTKTNINGQW---EGELNGKTGHFPFTHVE 260
GD++ + + N W + +G+ G +
Sbjct: 39 GDVVTILEACENKSWYRVKHHTSGQEGLLAAGALR 73
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 79.3 bits (196), Expect = 3e-19
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+ + + A D++ +D LPFK+NDI+ + KD+E+ W ++G+ GS PV +V+
Sbjct: 5 GSPEFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVE 64
Query: 165 KYSE 168
Sbjct: 65 ILLS 68
Score = 50.8 bits (122), Expect = 7e-09
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 217 NAYDKTALKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVEFIPTNE 266
N D + L + DII +T K N + G+LNGK G FP HVE + ++
Sbjct: 20 NVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLSDV 70
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 86.5 bits (214), Expect = 3e-19
Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 6/157 (3%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
DP +++G ++R EA+ L + +G FL+R LG YVL + + + H+ I
Sbjct: 3 DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIE 62
Query: 65 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYL-DTSPLIKPATKT-IEKVIAKYDFDGN 122
+ N T G K L FY L KP + +
Sbjct: 63 RQLN---GTYAIAGGKAHCGPAELCEFYSRDPDGLPCNLRKPCNRPSGLEPQPGVFDCLR 119
Query: 123 DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIP 159
D + + + E+ + ++ +
Sbjct: 120 DAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIATT 156
Score = 76.1 bits (187), Expect = 1e-15
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN 64
H+R WY +TR+EA+ L S + +G FL+R G Y L + V HY+I+
Sbjct: 156 TAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKE-QGTYALSLIYGKTVYHYLIS 214
Query: 65 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHY 96
+ F L L+ + K+
Sbjct: 215 QDKA---GKYCIPEGTKFDTLWQLVEYLKLKA 243
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 78.8 bits (195), Expect = 3e-19
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
VIAK+D+ +L KKN+ L ++ D + WW +N + G +P YV++ E
Sbjct: 7 VIAKWDYTAQQDQELDIKKNERLWLL-DDSKTWWRVRNAANRTGYVPSNYVERKLE 61
Score = 26.8 bits (60), Expect = 1.6
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQW-EGE-LNGKTGHFPFTHVE 260
+D TA L ++ + + + + + W +TG+ P +VE
Sbjct: 11 WDYTAQQDQELDIKKNERLWLL--DDSKTWWRVRNAANRTGYVPSNYVE 57
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 85.0 bits (211), Expect = 5e-19
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
WY G + R E +L+ G FLVR+S YVL V + H+II + N
Sbjct: 15 WYHGAIPRAEVAELLVHS---GDFLVRESQG-KQEYVLSVLWDGLPRHFIIQSLDN---- 66
Query: 73 TCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAK 116
Y++ + F +P L+ PL K + + + + K
Sbjct: 67 -LYRLEGEGFPSIPLLIDHLLSTQQ---PLTKKSGVVLHRAVPK 106
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 78.1 bits (193), Expect = 5e-19
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
V+AK+D+ +L KKN+ L ++ D + WW +N + G +P YV++ +
Sbjct: 8 VVVVAKFDYVAQQEQELDIKKNERLWLL-DDSKSWWRVRNSMNKTGFVPSNYVERKN 63
Score = 27.7 bits (62), Expect = 1.1
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 7/60 (11%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTNETSVETN 272
+D A L ++ + + + + W KTG P +VE + + ++
Sbjct: 14 FDYVAQQEQELDIKKNERLWLLDDS-KSWWRVRNSMNKTGFVPSNYVERKNSARAAANSS 72
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell
adapter containing SH2 domain protein; NMR {Mus
musculus}
Length = 141
Score = 80.3 bits (198), Expect = 6e-19
Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 13/119 (10%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGN--YVLCVKENNKVSHYII 63
WY G R+ A+ L +G+FL+R S+ Y L N +V + +
Sbjct: 18 AELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKRVYNIPV 77
Query: 64 NKITNTEQQTCYKIG-----DKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKY 117
I T+Q Y +G ++ F + ++ ++ + L LI T + KY
Sbjct: 78 RFIEATKQ---YALGKKKNGEEYFGSVVEIVNSHQHNPL---VLIDSQNNTKDSTRLKY 130
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal
transduction inhibitor, KIT regula phosphotyrosine,
signaling protein; HET: PTR; 1.45A {Homo sapiens}
Length = 141
Score = 79.9 bits (197), Expect = 7e-19
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYII 63
+ WY+G +TR EA+ L + D G+FLVRDS+ L + + K H I
Sbjct: 17 ELKKLAKQGWYWGPITRWEAEGKLANVPD-GSFLVRDSSDDRYLLSLSFRSHGKTLHTRI 75
Query: 64 NKITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
+N + + + + L+
Sbjct: 76 EH-SNGRFSFYEQPDVEGHTSIVDLIEHSIGD 106
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 77.2 bits (190), Expect = 2e-18
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 100 SPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIP 159
S + VIAK+D+ +L KKN+ L ++ D + WW +N + G +P
Sbjct: 21 SLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLL-DDSKTWWRVRNAANRTGYVP 79
Query: 160 VPYVQK 165
YV++
Sbjct: 80 SNYVER 85
Score = 29.4 bits (66), Expect = 0.33
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 12/89 (13%)
Query: 179 HLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTA-----LKLEIGDIIK 233
H+ VP ++K L L V +D TA L ++ + +
Sbjct: 1 HMKERPPPVPNPDYNSLKKGSLVKNLHM-TEEVIVIA--KWDYTAQQDQELDIKKNERLW 57
Query: 234 VTKTNINGQW--EGELNGKTGHFPFTHVE 260
+ + + W +TG+ P +VE
Sbjct: 58 LL--DDSKTWWRVRNAANRTGYVPSNYVE 84
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 76.6 bits (189), Expect = 3e-18
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 99 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGS 157
T L + +A YD++ DDL F K + +++ E WW A++++ GE G
Sbjct: 4 TGTLRTRGGTGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGY 63
Query: 158 IPVPYVQK 165
IP YV
Sbjct: 64 IPSNYVAP 71
Score = 31.9 bits (73), Expect = 0.029
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFI 262
YD A L G+ ++ ++ WE G+TG+ P +V +
Sbjct: 22 YDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 72
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 76.2 bits (188), Expect = 3e-18
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYV 163
Y + + PD+L +++++L V+ D E W A+N G+VG +P Y+
Sbjct: 8 TLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYL 67
Query: 164 QKYSE 168
Q +
Sbjct: 68 QFPTS 72
Score = 35.0 bits (81), Expect = 0.003
Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 205 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVT-KTNINGQWEGE-LNGKTGHFPFT 257
+V Y A L +E ++++V ++ + G+ G+ P
Sbjct: 8 TLRNYPLTCKV--VYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEK 65
Query: 258 HVEFIPTNETS 268
+++F ++ S
Sbjct: 66 YLQFPTSSGPS 76
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 75.8 bits (187), Expect = 5e-18
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
+ V YDF + ++L K+++L V+ +D WW ++ SG+ G +P + + S
Sbjct: 8 KYVKILYDFTARNANELSVLKDEVLEVL-EDGRQWWKLRSRSGQAGYVPCNILGEAS 63
Score = 37.2 bits (87), Expect = 4e-04
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 208 ARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
+ K V++ YD TA L + ++++V + +G+ G+ P +
Sbjct: 5 SSGKYVKI--LYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILG 60
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 76.7 bits (189), Expect = 5e-18
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 99 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGS 157
+S T + +A YD++ +DL FKK + +++ E WW A++I+ G+ G
Sbjct: 16 SSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGY 75
Query: 158 IPVPYVQKYSEGMS 171
IP YV +
Sbjct: 76 IPSNYVVPADSIQA 89
Score = 31.3 bits (71), Expect = 0.12
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 13 WYFGMMTRQEAQAILLS 29
WYFG M R++A++ S
Sbjct: 92 WYFGKMGRKDAESGPSS 108
Score = 30.5 bits (69), Expect = 0.19
Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 11/92 (11%)
Query: 183 SSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKT 237
SS + V + V YD A L + G+ ++
Sbjct: 2 SSGSSGASSSFSVVSS--SYPTGLTGGVTIFVA--LYDYEARTTEDLSFKKGERFQIINN 57
Query: 238 NINGQWEGE--LNGKTGHFPFTHVEFIPTNET 267
WE GK+G+ P +V + +
Sbjct: 58 TEGDWWEARSIATGKSGYIPSNYVVPADSIQA 89
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 82.4 bits (204), Expect = 5e-18
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 9 DRNSWYFGMMTRQEAQAILLSEKD-NGAFLVRDSNTILGNYVLCVK-----ENNKVSHYI 62
+ W+F ++R++A+ LL+ + G+F++RDS T G+Y L V+ + + V HY
Sbjct: 68 ETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYK 127
Query: 63 INKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVHYLD-TSPLIKPATKTIEKVIAKYD 118
I + N + I + TFS L L+ YK L P + + + D
Sbjct: 128 IRTLDN----GGFYISPRSTFSTLQELVDHYKKGNDGLCQKLSVPCMSSKPQKPWEKD 181
Score = 62.8 bits (153), Expect = 2e-11
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYS 167
V+A YD++ +DL F+K D ++V+ + WW A++++ + G IP YV +
Sbjct: 11 VVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVD 65
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 75.0 bits (185), Expect = 7e-18
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 107 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
+ ++ V+ YDF + +L K+ D+L V+ D WW ++ +G+ G +P + Y
Sbjct: 5 SGALKWVLCNYDFQARNSSELSVKQRDVLEVL-DDSRKWWKVRDPAGQEGYVPYNILTPY 63
Query: 167 SEGMS 171
S
Sbjct: 64 PAAAS 68
Score = 30.4 bits (69), Expect = 0.099
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 208 ARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQW--EGELNGKTGHFPFTHVE 260
+K V YD A L ++ D+++V + + +W + G+ G+ P+ +
Sbjct: 6 GALKWVLC--NYDFQARNSSELSVKQRDVLEVL--DDSRKWWKVRDPAGQEGYVPYNILT 61
Query: 261 FIP 263
P
Sbjct: 62 PYP 64
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 75.2 bits (185), Expect = 9e-18
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 99 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGS 157
+ PL P + + D+ D F++ + L V+S + WW A ++ +G
Sbjct: 6 SGPLPNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISDEGG-WWKAISLSTGRESY 64
Query: 158 IPVPYVQKYS 167
IP V + S
Sbjct: 65 IPGICVARVS 74
Score = 28.2 bits (63), Expect = 0.76
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQW---EGELNGKTGHFPFTHVEFIPTNET 267
+ D + G+ ++V G W G+ + P V + +
Sbjct: 27 PSPDISPPIFRRGEKLRVISDE--GGWWKAISLSTGRESYIPGICVARVSGPSS 78
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 74.6 bits (184), Expect = 1e-17
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
K+ Y+F+ +P +L + + L V+ + WW +N +G G IP ++ S
Sbjct: 8 LKMQVLYEFEARNPRELTVVQGEKLEVL-DHSKRWWLVKNEAGRSGYIPSNILEPLS 63
Score = 34.5 bits (80), Expect = 0.003
Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 208 ARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
+ +++V Y+ A L + G+ ++V + G++G+ P +E +
Sbjct: 5 SSGLKMQV--LYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPL 62
Query: 263 PT 264
Sbjct: 63 SG 64
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 74.2 bits (183), Expect = 1e-17
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYS 167
+ V+A Y +DG PDDL FKK + + V+ + E WW A++ ++ + G IP YV K +
Sbjct: 8 DIVVALYPYDGIHPDDLSFKKGEKMKVLEEHGE-WWKAKSLLTKKEGFIPSNYVAKLN 64
Score = 29.9 bits (68), Expect = 0.12
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVE 260
L + G+ +KV + + W+ + L K G P +V
Sbjct: 24 LSFKKGEKMKVLEEH-GEWWKAKSLLTKKEGFIPSNYVA 61
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5-
triphosphate, wortmannin, H1047R, ATP-binding, disease
mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB:
3hiz_B 2rd0_B 4a55_B* 3mtt_A
Length = 373
Score = 81.0 bits (199), Expect = 1e-17
Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 14/132 (10%)
Query: 4 TFDPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTIL-GNYVLCVKENNKVSHYI 62
WY+G ++R+E L D G FLVRD++T + G+Y L +++
Sbjct: 3 NNMSLQNAEWYWGDISREEVNEKLRDTAD-GTFLVRDASTKMHGDYTLTLRKGGNNKLIK 61
Query: 63 INKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVHYLDTS------PLIKPATKTIEKVIA 115
I Y D TFS + L+ Y+ L L+ P +K + +
Sbjct: 62 IFHRDGK-----YGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQVV 116
Query: 116 KYDFDGNDPDDL 127
K D L
Sbjct: 117 KEDNIEAVGKKL 128
Score = 75.3 bits (184), Expect = 1e-15
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 8 HDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKIT 67
HD +W G R +A+ LL K +G FLVR+S+ G Y V + +V H +INK
Sbjct: 298 HDEKTWNVGSSNRNKAEN-LLRGKRDGTFLVRESSKQ-GCYACSVVVDGEVKHCVINK-- 353
Query: 68 NTEQQTCYKIGDKTFSDLPSL 88
T + +S L L
Sbjct: 354 -TATGYGFAEPYNLYSSLKEL 373
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1,
solution structure, cell junctio membrane, hydrolase,
membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Length = 131
Score = 76.1 bits (187), Expect = 2e-17
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 21/100 (21%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK---------------ENNK 57
WY ++R +A A LL +KD GAFL+RDS++ G Y L +K
Sbjct: 22 WYKPHLSRDQAIA-LLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQL 80
Query: 58 VSHYIINKITNTEQQTCYKIGDK--TFSDLPSLLAFYKVH 95
V H++I + K F L +L++ + +
Sbjct: 81 VRHFLIET---GPKGVKIKGCPSEPYFGSLSALVSQHSIS 117
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 73.4 bits (181), Expect = 2e-17
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
+ +KYDF + +L K+D+L ++ D WW +N SG+ G +P +
Sbjct: 2 KYAKSKYDFVARNSSELSVMKDDVLEILD-DRRQWWKVRNASGDSGFVPNNILDIMRT 58
Score = 29.5 bits (67), Expect = 0.17
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 11/63 (17%)
Query: 211 KQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQW-EGE-LNGKTGHFPFTHVEFIP 263
K + YD A L + D++++ + QW + +G +G P ++ +
Sbjct: 2 KYAKS--KYDFVARNSSELSVMKDDVLEIL--DDRRQWWKVRNASGDSGFVPNNILDIMR 57
Query: 264 TNE 266
T E
Sbjct: 58 TPE 60
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 73.5 bits (181), Expect = 3e-17
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
E V+A YD+ P ++ KK DIL +++ + WW + ++ G +P YV+K
Sbjct: 6 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKK 59
Score = 51.2 bits (123), Expect = 4e-09
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNG 273
YD + ++ GDI+ + + W+ E+N + G P +V+ + +++ N
Sbjct: 12 YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQSASRENL 71
Query: 274 NG 275
G
Sbjct: 72 GG 73
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 73.1 bits (180), Expect = 3e-17
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
E+ +A D+ D L F + + ++++ + WW + +G G IP +V K+S
Sbjct: 8 EEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGE-RAGCCGYIPANHVGKHSGPS 66
Query: 171 S 171
S
Sbjct: 67 S 67
Score = 44.2 bits (105), Expect = 1e-06
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
D A L G+ I + + W GE G G+ P HV
Sbjct: 14 ADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVG 60
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 73.5 bits (181), Expect = 4e-17
Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDE-EHWWTAQNISGEVGSIPVPYV 163
+ + +A Y F+G+ + + + L ++ +D+ + W + G G +P Y+
Sbjct: 2 SSGSSGGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYL 61
Query: 164 QKYSE 168
+ S
Sbjct: 62 RVTSG 66
Score = 29.2 bits (66), Expect = 0.26
Identities = 5/38 (13%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 229 GDIIKVT-KTNINGQWEGEL-NGKTGHFPFTHVEFIPT 264
G+ + + + +G G G+ P +++
Sbjct: 29 GEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTSG 66
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 73.2 bits (180), Expect = 5e-17
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
E V+A YD+ P ++ KK DIL +++ + WW + ++ G +P YV+
Sbjct: 12 SDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVK 70
Query: 165 KYSEG 169
K +
Sbjct: 71 KLAAA 75
Score = 46.2 bits (110), Expect = 3e-07
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
YD + ++ GDI+ + + W+ E+N + G P +V+ + +
Sbjct: 24 YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAAAWSH 78
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 73.2 bits (180), Expect = 5e-17
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
E V+A YD+ P ++ KK DIL +++ + WW + ++ G +P YV+K
Sbjct: 3 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDPAQ 61
Query: 171 S 171
S
Sbjct: 62 S 62
Score = 47.8 bits (114), Expect = 8e-08
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNG 273
YD + ++ GDI+ + + W+ E+N + G P +V+ + +++ N
Sbjct: 9 YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQSASRENL 68
Query: 274 NG 275
G
Sbjct: 69 GG 70
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 79.3 bits (196), Expect = 6e-17
Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 10/130 (7%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINK 65
W+ G +TR++A+ +L + G FLVR+S G+Y LCV KV HY I
Sbjct: 75 TKLSLMPWFHGKITREQAERLLYPPE-TGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMY 133
Query: 66 ITNTEQQTCYKIGDK-TFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDP 124
+ I ++ F +L L+ Y L K D
Sbjct: 134 HASK-----LSIDEEVYFENLMQLVEHYTTD---ADGLCTRLIKPKVMEGTVAAQDEFYR 185
Query: 125 DDLPFKKNDI 134
++
Sbjct: 186 SGWALNMKEL 195
Score = 68.1 bits (167), Expect = 4e-13
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 103 IKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEE-HWWTAQNISGEVGSIPVP 161
I+ + + + IAKY+F G DLPF K D+L +V+ ++ +W+ A+N G G IP
Sbjct: 4 IQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPAN 63
Query: 162 YVQKYSEGMSILSL 175
YVQK + L
Sbjct: 64 YVQKREGVKAGTKL 77
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 71.9 bits (177), Expect = 1e-16
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQK 165
VIA + ++ + DL F+K + L ++ + E WW AQ+++ G+ G IP +V K
Sbjct: 7 NLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAK 61
Score = 29.2 bits (66), Expect = 0.26
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 10/50 (20%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQW---EGELNGKTGHFPFTHVE 260
+ L E G+ +++ + + G+W + G+ G PF V
Sbjct: 13 HSYEPSHDGDLGFEKGEQLRILEQS--GEWWKAQSLTTGQEGFIPFNFVA 60
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 71.9 bits (177), Expect = 1e-16
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
E V+ YD+ P +L KK DIL +++ + WW + ++G G +P Y++K
Sbjct: 7 ELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIE-VNGRQGFVPAAYLKK 60
Score = 45.7 bits (109), Expect = 3e-07
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
YD L ++ GDI+ + + W+ E+NG+ G P +++ +
Sbjct: 13 YDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL 61
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 72.9 bits (179), Expect = 1e-16
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 104 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-NISGEVGSIPVPY 162
+ +A+Y F G+ +L F+K + + ++ K E+W+ + +G G P Y
Sbjct: 11 TYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASY 70
Query: 163 VQKYSE 168
VQ E
Sbjct: 71 VQVSRE 76
Score = 39.3 bits (92), Expect = 1e-04
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 205 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFT 257
P + ++ Y L G+ I + + +EG + G+ G FP +
Sbjct: 10 PTYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPAS 69
Query: 258 HVEFIPTNETSV 269
+V+ +
Sbjct: 70 YVQVSREPRLRL 81
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 71.6 bits (176), Expect = 1e-16
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
T V+A YD+ N D+L + DI+ V KD E WW G+ G P +V
Sbjct: 5 TAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVAS 61
Score = 41.2 bits (97), Expect = 2e-05
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGEL-NGKTGHFPFTHVEFIPTNE 266
A L + GDII+V + W G + G+ G+FP HV +
Sbjct: 16 TANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASETLYQ 66
>3maz_A Signal-transducing adaptor protein 1; modular domain,
phosphotyrosine, specificity, cytoplasm,
phosphoprotein, SH2 domain, signaling protein; HET:
PTR; 1.90A {Homo sapiens}
Length = 125
Score = 73.3 bits (180), Expect = 1e-16
Identities = 17/94 (18%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKEN---NKVSHYI 62
D + F ++R+EA +L G ++R + NY + +++ ++ HY
Sbjct: 10 DVLNPMPACFYTVSRKEATEMLQKNPSLGNMILRPGSD-SRNYSITIRQEIDIPRIKHY- 67
Query: 63 INKITNTEQQTCYKIGDK-TFSDLPSLLAFYKVH 95
K+ + Q ++ T +L S++ ++
Sbjct: 68 --KVMSVGQNYTIELEKPVTLPNLFSVIDYFVKE 99
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 71.3 bits (175), Expect = 2e-16
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS--------GEVGSIPVPY 162
+ +A +D+ +DL F+ D L V+ E WW A+++ G IP Y
Sbjct: 8 QYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNY 67
Query: 163 VQKYS 167
V + S
Sbjct: 68 VAEDS 72
Score = 31.2 bits (71), Expect = 0.061
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 14/56 (25%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGEL---------NGKTGHFPFTHVE 260
+D A L GD ++V T+ G W G+ P +V
Sbjct: 14 FDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVA 69
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 71.1 bits (175), Expect = 2e-16
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNI-SGEVGSIPVPYV 163
A+K+ ++ I +YDF D+L K D + ++ K + WW Q + SG+ G +P ++
Sbjct: 2 ASKSKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFI 61
Query: 164 QKYSE 168
+ +
Sbjct: 62 EPVRD 66
Score = 33.4 bits (77), Expect = 0.010
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQW-EGEL--NGKTGHFPFTHVEFIPTNETS 268
YD A L ++ GD + + + W +L +GK+G P +E + + +
Sbjct: 13 YDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDKKHT 70
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 70.8 bits (174), Expect = 3e-16
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-------NISGEVGSIPVPYV 163
E V+A YD+ P ++ KK DIL +++ + WW + G +P YV
Sbjct: 2 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 61
Query: 164 QK 165
+K
Sbjct: 62 KK 63
Score = 29.2 bits (66), Expect = 0.24
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 15/56 (26%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQW---------EGELNGKTGHFPFTHVE 260
YD + ++ GDI+ + + N W G+ + G P +V+
Sbjct: 8 YDYQEKSPREVTMKKGDILTLLNST-NKDWWKVEVKITVNGKTYERQGFVPAAYVK 62
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 71.7 bits (176), Expect = 3e-16
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 98 DTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGS 157
+S PA + +VIA YD+ N+ D+L F K ++ V++KD+ WW + I+G G
Sbjct: 22 PSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGE-INGVTGL 80
Query: 158 IPVPYVQKYSE 168
P YV+ ++
Sbjct: 81 FPSNYVKMTTD 91
Score = 50.5 bits (121), Expect = 2e-08
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 205 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
PAF V QV YD A L G +I V + W+GE+NG TG FP +V
Sbjct: 29 PAFHPVCQVIA--MYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYV 86
Query: 260 EFIPTNETS 268
+ +
Sbjct: 87 KMTTDSSGP 95
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 70.8 bits (174), Expect = 3e-16
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYSE 168
A YD++ DDL F K + +++ E WW A++++ GE G IP Y+
Sbjct: 8 FEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDR 64
Score = 33.9 bits (78), Expect = 0.007
Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIPTNETSVETNGN 274
A + L G+ ++ ++ WE G+TG+ P ++ + + + + +
Sbjct: 15 EARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRLDYKDDDDKH 74
Query: 275 GDIHN 279
H+
Sbjct: 75 HHHHH 79
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 70.8 bits (174), Expect = 4e-16
Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+ + + + +A + + G +L F++ D+L + + WW + +G G IP Y+
Sbjct: 5 SSGEGVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGE-HNGMRGLIPHKYIT 63
Score = 50.0 bits (120), Expect = 1e-08
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNG 273
+ T L GD++++ + + W GE NG G P ++ E V G
Sbjct: 17 FAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGTEKQVVGAG 76
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 70.3 bits (173), Expect = 4e-16
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
E IAK+D+ G +L FKK L++ + E WW + +G G +P Y+
Sbjct: 7 EFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGR-HNGIDGLVPHQYIV 59
Score = 44.1 bits (105), Expect = 1e-06
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 229 GDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
G + + WEG NG G P ++
Sbjct: 28 GASLLLYHRASEDWWEGRHNGIDGLVPHQYIV 59
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 70.9 bits (174), Expect = 4e-16
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYS 167
+ +A YD++ DL F K + ++ WW A+++ +GE G IP YV
Sbjct: 5 GVTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVD 64
Query: 168 E 168
Sbjct: 65 S 65
Score = 37.4 bits (87), Expect = 4e-04
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIPTNETSVETNGN 274
NA T L G+ ++ + WE G+TG+ P +V + + + +
Sbjct: 16 NATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSIQGEQKLISE 75
Query: 275 GDIH 278
D+H
Sbjct: 76 EDLH 79
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 70.9 bits (174), Expect = 4e-16
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 99 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGS 157
+P I+ A V+A YD++ +DL F+K D ++V+ + E WW A++++ + G
Sbjct: 14 NTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGY 72
Query: 158 IPVPYVQK 165
IP YV +
Sbjct: 73 IPSNYVAR 80
Score = 32.0 bits (73), Expect = 0.040
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNET 267
YD A L + GD + V + + W+ K G+ P +V + + ET
Sbjct: 32 YDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDSLET 86
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 70.3 bits (173), Expect = 5e-16
Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-NISGEVGSIPVPYVQKYSE 168
+ IAK++F+G+ ++ F+K + + ++ + +E+W+ + + G P+ YV S
Sbjct: 8 GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVISG 66
Score = 39.5 bits (93), Expect = 6e-05
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNG--KTGHFPFTHVEFIP 263
N + + G+ I + + +EG + G + G FP T+V+ I
Sbjct: 17 NGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIS 65
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 70.5 bits (173), Expect = 5e-16
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 100 SPLIKPATKTIEKVIAKYDFDGNDPD-DLPFKKNDILIVVSKD-----EEHWWTAQNISG 153
S I P+ +E A YDF +P+ ++ KK D++ ++SK + WW + +G
Sbjct: 6 SEPIDPSK--LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNG 63
Query: 154 EVGSIPVPYVQK 165
+G IP Y++
Sbjct: 64 NIGYIPYNYIEI 75
Score = 35.9 bits (83), Expect = 0.001
Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 208 ARVKQVRVPNAYDKTA------LKLEIGDIIKV-TKTNINGQ----WEGEL-NGKTGHFP 255
++++ R YD + L+ GD++ + +K + G+ W+ NG G+ P
Sbjct: 12 SKLEFARA--LYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIP 69
Query: 256 FTHVEFIPTNE 266
+ ++E I +
Sbjct: 70 YNYIEIIKRRK 80
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 69.6 bits (171), Expect = 6e-16
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 112 KVIAKYDFDG-NDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKY 166
A YDF G P +LP KK D++ + ++ W + + + G +P Y++ +
Sbjct: 2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKPH 58
Score = 38.4 bits (90), Expect = 1e-04
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVE 260
L L+ GD+I +T+ +G G+L K G P +++
Sbjct: 18 LPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 70.1 bits (172), Expect = 6e-16
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+ +I A +D +L FK D++ V+ + WW Q I E G P +V+
Sbjct: 5 SSGDSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQ-IDDEEGWFPASFVR 63
Query: 165 KYSE 168
+
Sbjct: 64 LWVN 67
Score = 48.9 bits (117), Expect = 4e-08
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVE 270
+D L + GD+IKV + W G+++ + G FP + V E VE
Sbjct: 17 WDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQEDEVE 73
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 69.5 bits (171), Expect = 6e-16
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
+ V A +DF+ + +L FK+ D++ +++KD+ +WW Q ++ G P YV Y+
Sbjct: 3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQ-LNNRRGIFPSNYVCPYN 58
Score = 47.2 bits (113), Expect = 1e-07
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
L + GD+I + + WEG+LN + G FP +V
Sbjct: 19 LAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 69.5 bits (171), Expect = 7e-16
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+E V A Y FD DL K D + ++ K W+ +G G P YV+
Sbjct: 2 MEYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGS-CNGRTGIFPANYVK 55
Score = 47.9 bits (115), Expect = 5e-08
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
L L+ GD +++ + ++G NG+TG FP +V+
Sbjct: 19 LGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 69.5 bits (171), Expect = 7e-16
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
++ A Y F+ PD+L F++ DI+ + + +WW G G IP YV +
Sbjct: 3 VKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGT-SKGRTGLIPSNYVAE 57
Score = 49.8 bits (120), Expect = 1e-08
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 208 ARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
+VK R Y L E GDII +T + W+G G+TG P +V
Sbjct: 1 GQVKVFRA--LYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 56
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 69.6 bits (171), Expect = 8e-16
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+ E+ IA Y + +P DL F + + ++V KD E WWT I G P YV+
Sbjct: 3 SGSSGGEEYIALYPYSSVEPGDLTFTEGEEILVTQKDGE-WWTGS-IGDRSGIFPSNYVK 60
Query: 165 KYSEGMS 171
G S
Sbjct: 61 PKDSGPS 67
Score = 45.7 bits (109), Expect = 3e-07
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 229 GDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
G+ I VT+ + W G + ++G FP +V+ + +S
Sbjct: 30 GEEILVTQKD-GEWWTGSIGDRSGIFPSNYVKPKDSGPSS 68
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 69.1 bits (170), Expect = 8e-16
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
+ A YDF+ + D+L F+ +++ V+ WWT + + ++G P YV
Sbjct: 1 VRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGR-LHNKLGLFPANYVAP 55
Score = 47.1 bits (113), Expect = 1e-07
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 210 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
V+ R YD A L G++++V ++ W G L+ K G FP +V +
Sbjct: 1 VRWARA--LYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 56
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 69.6 bits (171), Expect = 9e-16
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 95 HYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGE 154
H + + A +DF GN +L FK D++ ++S+ + W + G
Sbjct: 3 HKVHHHHHHHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT-VRGA 61
Query: 155 VGSIPVPYVQK 165
G P+ +V+
Sbjct: 62 TGIFPLSFVKI 72
Score = 47.7 bits (114), Expect = 1e-07
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
L + GD+I + EG + G TG FP + V+ +
Sbjct: 35 LNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILK 74
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 69.2 bits (170), Expect = 1e-15
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
+A Y F + +DL + DI+ ++ E WW + I +G P +VQ+ S
Sbjct: 8 NTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGK-IQDRIGFFPANFVQRLSG 64
Score = 47.6 bits (114), Expect = 7e-08
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
L++ GDII + + + W+G++ + G FP V+ +
Sbjct: 24 LEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLS 63
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 75.7 bits (186), Expect = 1e-15
Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK-----ENNKVS 59
D WYFG +TR+E++ +LL +E G FLVR+S T G Y L V + V
Sbjct: 143 DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVK 202
Query: 60 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLD-TSPLIKPATK 108
HY I K+ + Y F+ L L+A+Y H L
Sbjct: 203 HYKIRKLDSGG---FYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPT 249
Score = 61.4 bits (149), Expect = 8e-11
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYV 163
P + +A YD++ DL FKK + L +V+ E WW A ++S G+ G IP YV
Sbjct: 80 PLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 139
Query: 164 QK 165
Sbjct: 140 AP 141
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 69.3 bits (170), Expect = 1e-15
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 111 EKVIAKYDFDGNDPD-DLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIPVPYVQ 164
A YDF +P+ ++ KK D++ ++SK + WW + +G +G IP Y++
Sbjct: 8 HFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 67
Score = 33.9 bits (78), Expect = 0.006
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 224 LKLEIGDIIKVT-KTNINGQ----WEGEL-NGKTGHFPFTHVEFI 262
+ L+ GD++ + K + G+ W+ NG G+ P+ ++E I
Sbjct: 25 VALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII 69
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 69.3 bits (170), Expect = 1e-15
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 111 EKVIAKYDFDGND-PDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSE 168
K A YDF G+ +LP KK DI+ + + W A+ + + G +P Y+ Y +
Sbjct: 3 PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKD 62
Score = 39.2 bits (92), Expect = 7e-05
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNETSV 269
L L+ GDI+ +++ +G +L K G P ++ +V
Sbjct: 20 LPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTV 67
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 68.7 bits (169), Expect = 1e-15
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVS-KDEEHWWTAQNI-SGEVGSIPVPYVQK 165
+E+ I +YDF D+L K D + ++ K + WW Q + SG+ G +P +++
Sbjct: 2 MERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59
Score = 31.0 bits (71), Expect = 0.050
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 210 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQW-EGEL--NGKTGHFPFTHVEF 261
+++ V YD A L ++ GD + + + W +L +GK+G P +E
Sbjct: 2 MERGIV--QYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59
Query: 262 I 262
+
Sbjct: 60 V 60
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 68.7 bits (169), Expect = 1e-15
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+ A +DF GN +L FK D++ ++S+ + W + G G P+ +V+
Sbjct: 6 RAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT-VRGATGIFPLSFVK 57
Score = 47.5 bits (114), Expect = 7e-08
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 210 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
+K +R +D T L + GD+I + EG + G TG FP + V+ +
Sbjct: 2 IKHMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL 59
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 69.4 bits (170), Expect = 2e-15
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 99 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI 158
+ I+ K KV A YDF+ + ++L FK +I+IV+ + +WW + +G
Sbjct: 6 SGSEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGE-NHRGIGLF 64
Query: 159 PVPYVQKYSE 168
P +V
Sbjct: 65 PSNFVTTNLN 74
Score = 47.0 bits (112), Expect = 2e-07
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVET 271
L + G+II V + W+GE + G FP V ET
Sbjct: 34 LTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIETEAAA 81
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 69.5 bits (170), Expect = 2e-15
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 110 IEKVIAKYDFDGNDPD-DLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIPVPYV 163
+E A YDF +P+ ++ KK D++ ++SK + WW + +G +G IP Y+
Sbjct: 14 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYI 73
Query: 164 QKYSE 168
+
Sbjct: 74 EIIKR 78
Score = 36.0 bits (83), Expect = 0.002
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 24/97 (24%)
Query: 187 VPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTA------LKLEIGDIIKVT-KTNI 239
+ + + P+ + LE FAR YD + L+ GD++ + K +
Sbjct: 1 ISEFGSEPIDPSKLE-----FARAL-------YDFVPENPEMEVALKKGDLMAILSKKDP 48
Query: 240 NGQ----WEGEL-NGKTGHFPFTHVEFIPTNETSVET 271
G+ W+ NG G+ P+ ++E I +
Sbjct: 49 LGRDSDWWKVRTKNGNIGYIPYNYIEIIKRRKKIEHV 85
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 68.9 bits (169), Expect = 2e-15
Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169
+E+ + ++ + +L + +++ V+ K+E WW S E G +P Y++ + G
Sbjct: 8 LEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVST-SEEQGWVPATYLEAQNSG 66
Score = 48.8 bits (117), Expect = 3e-08
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 210 VKQVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNE 266
++Q V + Y K L L+ G+++ V + N +G W + + G P T++E +
Sbjct: 8 LEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSGP 67
Query: 267 TS 268
+S
Sbjct: 68 SS 69
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 68.4 bits (168), Expect = 2e-15
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQK 165
+V A YD+DG + D+L FK D L + + DE+ W + SG++G P YV+
Sbjct: 5 RVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEA 59
Score = 36.8 bits (86), Expect = 4e-04
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 219 YDKTA-----LKLEIGDIIKVT-KTNINGQWEGELN-GKTGHFPFTHVEFI 262
YD L + GD + + + G G L+ G+ G +P +VE I
Sbjct: 10 YDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI 60
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 69.0 bits (169), Expect = 2e-15
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYSEG 169
V+A YD+ PDDL F+K D ++V+ + E WW A++++ + G IP YV + G
Sbjct: 4 IIVVALYDYVSWSPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVARVDSG 62
Score = 27.7 bits (62), Expect = 1.2
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNETS 268
YD + L + GD + V + + W+ K G+ P +V + + +
Sbjct: 10 YDYVSWSPDDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDSGGGT 65
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 68.4 bits (168), Expect = 2e-15
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
+ A Y F+ PD+L F++ DI+ + + +WW G G IP YV + S
Sbjct: 8 KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGT-SKGRTGLIPSNYVAEQSG 64
Score = 48.4 bits (116), Expect = 4e-08
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
Y L E GDII +T + W+G G+TG P +V
Sbjct: 14 YTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQS 63
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 68.0 bits (167), Expect = 2e-15
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
V A +DFD + +L F++ D + V+ + +WW G+ G P YV +
Sbjct: 3 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGA-CHGQTGMFPRNYVTAVN 58
Score = 46.8 bits (112), Expect = 1e-07
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
+ + L GD I V + W+G +G+TG FP +V +
Sbjct: 12 DPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV 57
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 68.0 bits (167), Expect = 2e-15
Identities = 12/56 (21%), Positives = 20/56 (35%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
+A YDF + + L K + L V+ + W G +P Y+
Sbjct: 6 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPV 61
Score = 37.2 bits (87), Expect = 3e-04
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVE 260
YD A L + G+ ++V N NG+W E + G P ++
Sbjct: 12 YDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYIT 59
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 68.0 bits (167), Expect = 3e-15
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
+ A ++ G +P DL F K D++++ + +E+W+ + I+G G P V+ S
Sbjct: 8 PRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGE-INGVSGIFPASSVEVISG 64
Score = 49.9 bits (120), Expect = 1e-08
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
LK GD+I + + ++GE+NG +G FP + VE I
Sbjct: 24 LKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVIS 63
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 68.0 bits (167), Expect = 3e-15
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 107 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKY 166
K +V A + ++ P+DL F++ DI++V+SK E W + G+VG P +V+
Sbjct: 2 LKKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGE-SKGKVGIFPKVFVEDS 60
Query: 167 S 167
+
Sbjct: 61 A 61
Score = 49.1 bits (118), Expect = 2e-08
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 264
L+ + GDII V EGE GK G FP VE T
Sbjct: 22 LEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSAT 62
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 68.0 bits (167), Expect = 3e-15
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-NISGEVGSIPVPYVQKYSE 168
+ IAK++F+G+ ++ F+K + + ++ + +E+W+ + + G P+ YV
Sbjct: 8 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKR 65
Score = 38.8 bits (91), Expect = 9e-05
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNG--KTGHFPFTHVEFIP 263
+ G+ I + + +EG + G + G FP T+V+ I
Sbjct: 23 MSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIK 64
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 68.0 bits (167), Expect = 3e-15
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
++ K+DF P +L +K DI+ + + +++W + G +G P YV+
Sbjct: 1 MKAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGE-HHGRLGIFPANYVE 54
Score = 54.9 bits (133), Expect = 2e-10
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 210 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 264
+K R+ +D A L L+ GDI+ + K EGE +G+ G FP +VE +P
Sbjct: 1 MKAARL--KFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPL 58
Query: 265 NETS 268
Sbjct: 59 EHHH 62
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 68.1 bits (167), Expect = 3e-15
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
++ + IAK+D+ G +L FKK L++ + + WW + +G G IP Y+
Sbjct: 4 GSSGEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGR-HNGIDGLIPHQYIV 62
Query: 165 KYSE 168
Sbjct: 63 VQDT 66
Score = 47.3 bits (113), Expect = 9e-08
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
+D L + G + + + + WEG NG G P ++ T+ S
Sbjct: 16 FDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTSGPS 70
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 68.2 bits (167), Expect = 3e-15
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 104 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN----ISGEVGSIP 159
+ K + +DF ++L F+ D+ V K+E+ WW + G +P
Sbjct: 4 RDQAHLGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVP 63
Query: 160 VPYVQKYS 167
Y+ +
Sbjct: 64 HNYLAERE 71
Score = 27.0 bits (60), Expect = 1.6
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 229 GDIIKVTKTNINGQWEGELN-----GKTGHFPFTHVE 260
GD+ V + W L+ G+ P ++
Sbjct: 32 GDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLA 68
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 68.0 bits (167), Expect = 3e-15
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
A +V A YDF+ + ++L FK +++ V+ + +WW + G P +V
Sbjct: 1 AGHMARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGE-NHRGTGLFPSNFVT 58
Score = 44.9 bits (107), Expect = 5e-07
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 206 AFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
A ++VR YD A L + G++I V + W+GE + TG FP V
Sbjct: 1 AGHMARRVRA--LYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 58
Query: 261 FIPT 264
+
Sbjct: 59 TDLS 62
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 67.4 bits (165), Expect = 6e-15
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWW--TAQNISGEVGSIPVPY 162
+ + +V YD ++ D+L F + +++IV ++++ WW + G PV +
Sbjct: 5 SSGNKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSF 64
Query: 163 VQKYSE 168
V S+
Sbjct: 65 VHILSD 70
Score = 45.4 bits (108), Expect = 6e-07
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 205 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNG---KTGHFPF 256
+ +V++V+ YD A L G++I VT W G + G + G FP
Sbjct: 5 SSGNKVRRVKT--IYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPV 62
Query: 257 THVEFIPTNETS 268
+ V + + S
Sbjct: 63 SFVHILSDSGPS 74
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 67.3 bits (165), Expect = 6e-15
Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 104 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPY 162
+ A+ + IAKYDF D+L FK+ DIL V++++ +++W+ A+ ++G+ G IP Y
Sbjct: 3 RRASVGSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAE-LNGKDGFIPKNY 61
Query: 163 VQKYSE 168
++
Sbjct: 62 IEMKPH 67
Score = 49.2 bits (118), Expect = 2e-08
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQW-EGELNGKTGHFPFTHVEFIPTNETSVE 270
YD A L + GDI+KV + W + ELNGK G P ++E P E V
Sbjct: 16 YDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPEFIVT 73
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 67.3 bits (165), Expect = 7e-15
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169
EK + + D++ F+K + V+ K+ E WW + G+ G P Y++K +
Sbjct: 9 EKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIR-YLGKEGWAPASYLKKAKDS 66
Score = 48.1 bits (115), Expect = 6e-08
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
+ E G ++V + N+ G W GK G P ++++ + S
Sbjct: 25 IGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDSGPS 69
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 67.3 bits (165), Expect = 7e-15
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
++ A YD+ +PD+L DIL V+ + E+ WWT + +G+ G +P Y++K S
Sbjct: 9 QEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVE-RNGQRGFVPGSYLEKLSG 65
Score = 51.1 bits (123), Expect = 5e-09
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 210 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
++ R YD TA L L GDI++V +G W E NG+ G P +++E +
Sbjct: 8 AQEYRA--LYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLS 64
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 66.9 bits (164), Expect = 7e-15
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
AK+DF +LP +K DI+ + + +++W+ + G VG P Y++ S
Sbjct: 8 RPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGE-HHGRVGIFPRTYIELLSG 64
Score = 51.1 bits (123), Expect = 5e-09
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
L L+ GDI+ + K +EGE +G+ G FP T++E +
Sbjct: 24 LPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLS 63
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 66.9 bits (164), Expect = 9e-15
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSEG 169
+A + + + P++L +K + + V+ K ++ W ++ +G G P YV S
Sbjct: 8 NMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSGP 67
Query: 170 MS 171
S
Sbjct: 68 SS 69
Score = 40.3 bits (95), Expect = 4e-05
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP 263
L L+ G+ I+V +G +G L G+TG FP +V +
Sbjct: 24 LDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVS 65
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 67.0 bits (164), Expect = 9e-15
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPY 162
+V A Y F+G P DL F+ D + V+SK + H WW + + G+ G P Y
Sbjct: 12 GNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGK-LRGQTGIFPANY 70
Query: 163 VQKYSE 168
V S
Sbjct: 71 VTMNSG 76
Score = 43.5 bits (103), Expect = 2e-06
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 224 LKLEIGDIIKVTK--TNINGQWEGELNGKTGHFPFTHVEFIP 263
L + GD I V + WEG+L G+TG FP +V
Sbjct: 34 LNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNS 75
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 66.6 bits (163), Expect = 1e-14
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 94 VHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISG 153
+ + KV A YDF+ + ++L FK +I+ V+ + +WW +
Sbjct: 1 MGHHHHHHSHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGE-THQ 59
Query: 154 EVGSIPVPYVQ 164
+G P +V
Sbjct: 60 GIGLFPSNFVT 70
Score = 46.2 bits (110), Expect = 2e-07
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 196 RKTHLEVKLPAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGK 250
H + ++VR YD A L + G+II V + W+GE +
Sbjct: 3 HHHHHHSHMNHQHEARKVRA--IYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQG 60
Query: 251 TGHFPFTHVE 260
G FP V
Sbjct: 61 IGLFPSNFVT 70
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 72.9 bits (179), Expect = 1e-14
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 11/134 (8%)
Query: 6 DPHDRNSWYFGMMTRQEAQAILL-SEKDNGAFLVRDSNTILGNYVLCVK-----ENNKVS 59
D WYFG +TR+E++ +LL +E G FLVR+S T G Y L V + V
Sbjct: 60 DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVK 119
Query: 60 HYIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLD-TSPLIKPATKTIEKVIAKYD 118
HY I K+ + Y F+ L L+A+Y H L + +
Sbjct: 120 HYKIRKLDSGG---FYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAK 176
Query: 119 FDGN-DPDDLPFKK 131
+ L +
Sbjct: 177 DAWEIPRESLRLEV 190
Score = 67.1 bits (164), Expect = 9e-13
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQK 165
+ +A YD++ DL FKK + L +V+ E WW A ++S G+ G IP YV
Sbjct: 2 VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAP 58
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 67.0 bits (164), Expect = 1e-14
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 100 SPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIP 159
P P + +EKV+A YD+ + D+L F++ I+ V+ K+++ W+ ++G G P
Sbjct: 8 DPPWAPRS-YLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGV-MNGVTGLFP 65
Query: 160 VPYVQKYSE 168
YV+ S
Sbjct: 66 GNYVESISG 74
Score = 51.2 bits (123), Expect = 5e-09
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 208 ARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
+ +++V YD T L + G II V K N +G +EG +NG TG FP +VE I
Sbjct: 15 SYLEKVVA--IYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESI 72
Query: 263 P 263
Sbjct: 73 S 73
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 68.0 bits (166), Expect = 1e-14
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQ 164
+ Y+F D+L + L + + + W+ A+ I G G +PV YV+
Sbjct: 6 AVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVR 59
Score = 32.2 bits (73), Expect = 0.065
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 8/73 (10%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGEL---NGKTGHFPFTHVEFIPTNETSVE 270
Y+ A L + G+ + + + + G G P ++V I + +
Sbjct: 10 YEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLMDPAKY 69
Query: 271 TNGNGDIHNSTPK 283
+ + K
Sbjct: 70 ASVDTYDREQVMK 82
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 66.1 bits (162), Expect = 1e-14
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
+ A Y +D D D+L F NDI+ ++ +D WWT + + G+ G P YV K
Sbjct: 1 GPLGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGR-LRGKQGLFPNNYVTK 59
Score = 50.7 bits (122), Expect = 5e-09
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
+A D L DII + K + +G W G L GK G FP +V I
Sbjct: 15 DAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI 60
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 66.5 bits (163), Expect = 1e-14
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 99 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI 158
P P A YDF+ + +L F++ D++ + ++ +E+W+ + G+ G
Sbjct: 3 MDPEFMPPLD-QPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGM-LHGQSGFF 60
Query: 159 PVPYVQK 165
P+ YVQ
Sbjct: 61 PLSYVQV 67
Score = 50.7 bits (122), Expect = 7e-09
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
L GD+I +T +EG L+G++G FP ++V+ +
Sbjct: 30 LGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLV 69
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 66.1 bits (162), Expect = 1e-14
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYS 167
E + F ++L +I+ V+ K ++W T +G+ G +P Y++ S
Sbjct: 8 EAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVM-FNGQKGLVPCNYLEPVS 63
Score = 48.0 bits (115), Expect = 5e-08
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
+ L++ G+I+ V K + NG+ G P ++E +
Sbjct: 14 FGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVS 63
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 65.8 bits (161), Expect = 2e-14
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 110 IEKVIAKYDFDGN--DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
I K A Y +D + D ++ F++N+IL V + WW A+ +GE G IP YVQ
Sbjct: 5 IYKAKALYPYDADDDDAYEISFEQNEILQVSDIEGR-WWKARRANGETGIIPSNYVQL 61
Score = 37.3 bits (87), Expect = 4e-04
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 220 DKTALKLEIGDIIKVTKTNINGQWEGE-LNGKTGHFPFTHVEFIPTNE 266
D + E +I++V+ W+ NG+TG P +V+ I E
Sbjct: 20 DAYEISFEQNEILQVSDIE-GRWWKARRANGETGIIPSNYVQLIDGPE 66
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 65.9 bits (161), Expect = 3e-14
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 99 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD----EEHWWTAQNISGE 154
+S + + A Y F +P++L N L ++ WW A+ ++G+
Sbjct: 2 SSGSSGSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAE-VNGK 60
Query: 155 VGSIPVPYVQKYSEGMS 171
G +P Y++K G S
Sbjct: 61 KGYVPSNYIRKTESGPS 77
Score = 39.7 bits (93), Expect = 6e-05
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 9/59 (15%)
Query: 219 YDKTA-----LKLEIGDIIKVT----KTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
Y A L + +K+ T W E+NGK G+ P ++ + +S
Sbjct: 20 YTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGPSS 78
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 65.4 bits (160), Expect = 3e-14
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
+ A DF+ +D D+L F+KNDI+ ++S+ +EH W + ++G G P +V+ E
Sbjct: 9 RAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGE-LNGLRGWFPAKFVEVLDE 64
Score = 50.0 bits (120), Expect = 1e-08
Identities = 15/50 (30%), Positives = 17/50 (34%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNG 273
L DII + W GELNG G FP VE +
Sbjct: 24 LGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSIAS 73
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 64.9 bits (159), Expect = 4e-14
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
+V A YD+D D+L FK+ D +IV KD WW + ++G+ G +P YVQ
Sbjct: 5 QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGE-LNGKRGWVPANYVQD 57
Score = 48.3 bits (116), Expect = 4e-08
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
YD A L + GD I V + + G WEGELNGK G P +V+ I
Sbjct: 10 YDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 58
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 66.3 bits (162), Expect = 4e-14
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQKYSEGMS 171
I YDF D+L + L + + W+ A+ I G G +PV +V
Sbjct: 9 IVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIATG 68
Query: 172 ILSLRNLHLDSSSHHVPQ 189
+ ++ D S ++P
Sbjct: 69 YATGNDVIEDIKSVNLPT 86
Score = 35.5 bits (82), Expect = 0.003
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 10/77 (12%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGH---FPFTHVEFI-PTNETSV 269
YD A L +G+ + + + + + G+ G P V I +
Sbjct: 12 YDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIATGYAT 71
Query: 270 ETNGNGDIHNS-TPKTE 285
+ DI + P +
Sbjct: 72 GNDVIEDIKSVNLPTVQ 88
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 64.9 bits (159), Expect = 4e-14
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
+ + + + + + D+L K DI+ VV + EE WW ++G+ G P ++++
Sbjct: 3 SGSSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV-LNGKTGMFPSNFIKE 61
Query: 166 YSE 168
S
Sbjct: 62 LSG 64
Score = 54.9 bits (133), Expect = 2e-10
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 208 ARVKQVRV---PNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
+ ++ +V + L+L++GDII+V G WEG LNGKTG FP ++ +
Sbjct: 5 SSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELS 63
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 64.5 bits (158), Expect = 4e-14
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH--WWTAQNISGEVGSIPVPYVQ 164
+ K +A Y F G + DLPF+K D++ ++ K + WWT + ++G G P YV+
Sbjct: 2 SSPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGR-VNGREGIFPANYVE 58
Score = 44.5 bits (106), Expect = 9e-07
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 229 GDIIKVTKT--NINGQWEGELNGKTGHFPFTHVEFI 262
GD+I + K + N W G +NG+ G FP +VE +
Sbjct: 25 GDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV 60
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 64.6 bits (158), Expect = 6e-14
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
YDF+ + +L FK+ DI+ + ++ +E+W+ I GE G P+ YV+
Sbjct: 5 CCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGM-IHGESGFFPINYVEV 57
Score = 50.7 bits (122), Expect = 6e-09
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETN 272
L + GDII +T +EG ++G++G FP +VE I E +
Sbjct: 20 LGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVPLEHHHHHH 68
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 64.2 bits (157), Expect = 8e-14
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGM 170
V A YD+ D+L F + ++ VSK+ WW + P YV+ S
Sbjct: 8 RTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISGPS 67
Query: 171 S 171
S
Sbjct: 68 S 68
Score = 41.1 bits (97), Expect = 2e-05
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGK-TGHFPFTHVEFI 262
A L G +I G W+G+ + +FP +VE I
Sbjct: 17 KAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDI 63
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 64.8 bits (158), Expect = 8e-14
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 98 DTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGS 157
K + + + + + D+L K DI+ VV + EE WW ++G+ G
Sbjct: 6 QQMGTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV-LNGKTGM 64
Query: 158 IPVPYVQKYSE 168
P ++++ S
Sbjct: 65 FPSNFIKELSG 75
Score = 55.2 bits (133), Expect = 2e-10
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 209 RVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
R ++ +V A+ L+L++GDII+V G WEG LNGKTG FP ++ +
Sbjct: 17 RRRRCQV--AFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELS 74
Query: 264 TNETSVETNG 273
+ +
Sbjct: 75 GESDELGISQ 84
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 64.3 bits (157), Expect = 8e-14
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+ V A+++F + D+L K DI+ V +E WW ++G G P YV+
Sbjct: 5 SSGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGT-LNGRTGWFPSNYVR 63
Query: 165 KYSE 168
+
Sbjct: 64 EIKS 67
Score = 56.9 bits (138), Expect = 4e-11
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 205 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
+ + V+ ++ L + GDII VT+ G WEG LNG+TG FP +V
Sbjct: 5 SSGSHQLIVKA--RFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62
Query: 260 EFIPTNETSVETNG 273
I ++E S ++G
Sbjct: 63 REIKSSERSGPSSG 76
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 63.8 bits (156), Expect = 9e-14
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
V AK++F + D+L F K D++ V +E WW +G G P YV++
Sbjct: 5 SVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT-HNGRTGWFPSNYVRE 58
Score = 50.7 bits (122), Expect = 5e-09
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
L GD+I VT+ G WEG NG+TG FP +V I
Sbjct: 21 LSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 59
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 64.3 bits (157), Expect = 9e-14
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWWTAQNISGEVGSIPVP 161
+ + V A YD++G D+L F + I+ +++K D++ +W + +G +G P
Sbjct: 3 SGSSGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGE-FNGRIGVFPSV 61
Query: 162 YVQKYSEGMS 171
V++ S G S
Sbjct: 62 LVEELSSGPS 71
Score = 48.1 bits (115), Expect = 5e-08
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 219 YDKTA-----LKLEIGDIIKVTK---TNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
YD L G II++ + +G WEGE NG+ G FP VE + + +S
Sbjct: 15 YDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSGPSS 72
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 63.8 bits (156), Expect = 1e-13
Identities = 12/59 (20%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
+ + +++ + D+L K DI+ + + EE WW+ ++ ++G P +V++
Sbjct: 1 MRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGT-LNNKLGLFPSNFVKELEL 58
Score = 56.9 bits (138), Expect = 4e-11
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 210 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPT 264
++Q +V ++ L+L++GDII + + G W G LN K G FP V+ +
Sbjct: 1 MRQCKV--LFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELEL 58
Query: 265 NETS 268
Sbjct: 59 EHHH 62
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 63.9 bits (156), Expect = 1e-13
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSE 168
++ +A YDF+ + ++L + DI+ + K + W A+N + G +P +V
Sbjct: 6 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQP 64
Score = 40.0 bits (94), Expect = 4e-05
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP 263
L+L GDI+ ++ + G E KTG P V +I
Sbjct: 22 LRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 63
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 63.3 bits (155), Expect = 1e-13
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
+ I ++D+ D+L +I+ + K++ WW Q I+G G P +V++ +
Sbjct: 3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQ-INGRRGLFPDNFVREIKK 58
Score = 49.5 bits (119), Expect = 1e-08
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 210 VKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFI 262
+ + V +D A L + +G+II + G WEG++NG+ G FP V I
Sbjct: 1 MVEAIV--EFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREI 56
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 63.8 bits (156), Expect = 1e-13
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
A YDF+ + +L FK+ DI+ + ++ +E+W+ + G G P+ YV+
Sbjct: 9 CCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGM-LHGHSGFFPINYVE 60
Score = 50.0 bits (120), Expect = 1e-08
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNG 273
L + GDII +T +EG L+G +G FP +VE + S ++G
Sbjct: 24 LGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVALPHSGPSSG 73
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 63.5 bits (155), Expect = 1e-13
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK--DEEHWWTAQNISGEVGSIPVPYV 163
+ + +A+Y+F D +L ++ D++ + S+ ++ WW + +G +G P YV
Sbjct: 3 SGSSGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGE-TNGRIGWFPSTYV 61
Query: 164 QKYSE 168
++
Sbjct: 62 EEEGI 66
Score = 48.5 bits (116), Expect = 4e-08
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 224 LKLEIGDIIKVTK--TNINGQWEGELNGKTGHFPFTHVEFIPTNE 266
L L GD++++ G W+GE NG+ G FP T+VE
Sbjct: 24 LSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGIQS 68
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 63.0 bits (154), Expect = 1e-13
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQ 164
++ +A YDF+ + ++L + DI+ + K + W A+N S + G +P +V
Sbjct: 2 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 56
Score = 40.6 bits (96), Expect = 2e-05
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFI 262
L+L GDI+ ++ + G E KTG P V +I
Sbjct: 18 LRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI 58
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 63.4 bits (155), Expect = 2e-13
Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
P + +++ + D+L K DI+ + + EE WW+ ++ ++G P +V+
Sbjct: 2 PLGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGT-LNNKLGLFPSNFVK 60
Query: 165 KYSE 168
+
Sbjct: 61 ELEV 64
Score = 53.8 bits (130), Expect = 4e-10
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 205 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
P ++ +Q +V ++ L+L++GDII + + G W G LN K G FP V
Sbjct: 2 PLGSKKRQCKV--LFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFV 59
Query: 260 EFIP 263
+ +
Sbjct: 60 KELE 63
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 63.0 bits (154), Expect = 2e-13
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYV 163
A E + + G + D+L F++ +I+ ++SK+ E WW + ++G+ G P +
Sbjct: 2 AMGAKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGE-LNGKEGVFPDNFA 60
Query: 164 QKYS 167
+ S
Sbjct: 61 VQIS 64
Score = 46.8 bits (112), Expect = 1e-07
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 206 AFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTK--TNINGQWEGELNGKTGHFPFTH 258
A + R + T L G+II + T G W+GELNGK G FP
Sbjct: 2 AMGAKEYCRT--LFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNF 59
Query: 259 VEFI 262
I
Sbjct: 60 AVQI 63
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 63.2 bits (154), Expect = 2e-13
Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS---GEVGSIPVPYVQKYS 167
+ ++ D++G++ + F++ + V+ ++ WW Q + G +P Y++K +
Sbjct: 11 DVYVSIADYEGDE-ETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKN 69
Query: 168 EGMS 171
G S
Sbjct: 70 SGPS 73
Score = 33.2 bits (76), Expect = 0.010
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 212 QVRVPNAYDKTA--LKLEIGDIIKVTKTNINGQWEGEL----NGKTGHFPFTHVEFIPTN 265
Y+ + G ++V + N NG W ++ G P ++E +
Sbjct: 12 VYVSIADYEGDEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNSG 71
Query: 266 ETS 268
+S
Sbjct: 72 PSS 74
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 68.1 bits (165), Expect = 3e-13
Identities = 24/194 (12%), Positives = 60/194 (30%), Gaps = 17/194 (8%)
Query: 95 HYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGE 154
+ + A +DF GN +L FK D++ ++S+ + W + G
Sbjct: 159 VKSVSPQGNSVDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT-VRGA 217
Query: 155 VGSIPVPYVQK---YSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVK 211
G P+ +V+ + E + + + + + + +
Sbjct: 218 TGIFPLSFVKILKDFPEEDDPTNWLRCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTR 277
Query: 212 QVRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGE---LNGKTGHFPFTHVEFIPTNETS 268
+ + GD++++ + L + FP+ +
Sbjct: 278 R-EFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPW---------KLH 327
Query: 269 VETNGNGDIHNSTP 282
+ N ++N+ P
Sbjct: 328 ITQKDNYRVYNTMP 341
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 62.6 bits (153), Expect = 3e-13
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 110 IEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
+ I +YD+D D+L + +I+ V K +E W ++G G P +V++
Sbjct: 1 MVDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKR 59
Score = 46.4 bits (111), Expect = 2e-07
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 219 YDKTA-----LKLEIGDIIK-VTKTNINGQWEGELNGKTGHFPFTHVEFIPTN 265
YD A L + +G+II+ V K G EGELNG+ G FP V+ I
Sbjct: 8 YDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRE 60
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 62.7 bits (153), Expect = 3e-13
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 103 IKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPV 160
+ TK+ + + ++ + D+L K+ DI+ +++KD + WW + ++G G P
Sbjct: 2 MDSRTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE-LNGRRGVFPD 60
Query: 161 PYVQK 165
+V+
Sbjct: 61 NFVKL 65
Score = 49.6 bits (119), Expect = 1e-08
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 224 LKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFIPTNE 266
L ++ GDI+ + + G WEGELNG+ G FP V+ +P +
Sbjct: 26 LTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDF 70
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 62.8 bits (153), Expect = 3e-13
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
A Y F D+L +K DI+I+ K EE WW ++G+ G P YV++
Sbjct: 8 RLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGS-LNGKKGHFPAAYVEELPS 64
Score = 55.4 bits (134), Expect = 1e-10
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNGD 276
L LE GDI+ + + G W G LNGK GHFP +VE +P+N + T +G
Sbjct: 24 LNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNAGNTATKASGP 76
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 62.9 bits (153), Expect = 3e-13
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-----EEHWWTAQNISGEVGSIP 159
T A +D++ ++L ++ D + V+S+D +E WWT Q SG VG P
Sbjct: 24 GTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFP 83
Query: 160 VPYVQ 164
YV
Sbjct: 84 SNYVA 88
Score = 37.5 bits (87), Expect = 4e-04
Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 13/89 (14%)
Query: 183 SSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKT 237
HH + + +D A L L GD ++V
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMGTTPAGPVWTA--VFDYEAAGDEELTLRRGDRVQVLSQ 59
Query: 238 NINGQ-----WEGEL-NGKTGHFPFTHVE 260
+ W G+L +G+ G FP +V
Sbjct: 60 DCAVSGDEGWWTGQLPSGRVGVFPSNYVA 88
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 62.2 bits (152), Expect = 3e-13
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
++ IA YD+ D++ F +DI+ + ++ WW G G P YV+
Sbjct: 4 GSSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGV-CKGRYGLFPANYVE 62
Score = 44.5 bits (106), Expect = 8e-07
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 205 PAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHV 259
P + + YD A + + DII + +G W G G+ G FP +V
Sbjct: 2 PLGSSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 61
Query: 260 EFI 262
E
Sbjct: 62 ELR 64
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 62.2 bits (152), Expect = 4e-13
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
V AK++F + D+L F K D++ V +E WW +G G P YV++
Sbjct: 7 LVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT-HNGRTGWFPSNYVRE 60
Score = 52.2 bits (126), Expect = 1e-09
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
L GD+I VT+ G WEG NG+TG FP +V I
Sbjct: 23 LSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIK 62
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 62.3 bits (152), Expect = 4e-13
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYV 163
+ + + + ++ + D+L K+ DI+ +++KD + WW + ++G G P +V
Sbjct: 3 SGSSGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE-LNGRRGVFPDNFV 61
Query: 164 QKYSE 168
+ S
Sbjct: 62 KLLSG 66
Score = 48.0 bits (115), Expect = 5e-08
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 224 LKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFIP 263
L ++ GDI+ + + G WEGELNG+ G FP V+ +
Sbjct: 24 LTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLS 65
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 62.9 bits (153), Expect = 4e-13
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH----WWTAQNISGEVGSIPV 160
A+YDF +++ F+ D+L + K+++ W A G IP
Sbjct: 12 SGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPA 71
Query: 161 PYVQ 164
YV+
Sbjct: 72 NYVK 75
Score = 38.2 bits (89), Expect = 3e-04
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 10/64 (15%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNI----NGQWEGELNGK-TGHFPFTHVEFIPTNETS 268
YD A + GD++ + G L+G+ TG P +V+ +
Sbjct: 24 YDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKRRGR 83
Query: 269 VETN 272
Sbjct: 84 KTIE 87
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 61.8 bits (151), Expect = 4e-13
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQ 164
A+YD+D + ++L F +ND +I + ++ WW + G G P YV
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55
Score = 38.3 bits (90), Expect = 1e-04
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFI 262
YD A L D I + + W GEL +G G FP +V
Sbjct: 7 YDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG 57
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 62.0 bits (151), Expect = 5e-13
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEG 169
+ ++ KK DIL +++ + WW + ++ G +P YV+K G
Sbjct: 4 PPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDSG 57
Score = 43.1 bits (102), Expect = 3e-06
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 219 YDKTA----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGN 274
+A + ++ GDI+ + + W+ E+N + G P +V+ + +
Sbjct: 7 PPYSAGGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLAL 66
Query: 275 GDIHNST 281
D +
Sbjct: 67 YDYQEKS 73
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 62.0 bits (151), Expect = 6e-13
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+A YD+ D++ F +DI+ + ++ WW G G P YV+
Sbjct: 19 TAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGV-CKGRYGLFPANYVE 70
Score = 47.7 bits (114), Expect = 8e-08
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
YD A + + DII + +G W G G+ G FP +VE + +S
Sbjct: 24 YDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSGPSS 78
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 61.7 bits (150), Expect = 6e-13
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ 149
+ E V+A YD+ P ++ KK DIL +++ + WW +
Sbjct: 16 DSGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE 60
Score = 28.1 bits (63), Expect = 0.61
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELN 248
YD + ++ GDI+ + + W+ E+N
Sbjct: 28 YDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN 62
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 62.0 bits (151), Expect = 7e-13
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 104 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVP 161
+ K YD+D + +L ++++ V S + W + + G +P+
Sbjct: 11 LKESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGE-RGNQKGKVPIT 69
Query: 162 YVQKYSEG 169
Y++ + G
Sbjct: 70 YLELLNSG 77
Score = 45.8 bits (109), Expect = 4e-07
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 204 LPAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPF 256
L + ++ RV YD A L L ++I V + GE + G P
Sbjct: 11 LKESSNNRKARV--LYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPI 68
Query: 257 THVEFIPTNETS 268
T++E + + +S
Sbjct: 69 TYLELLNSGPSS 80
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 61.7 bits (150), Expect = 7e-13
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 1/58 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
+ + ++ F + V+ K E WW + G P Y+
Sbjct: 9 TSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVR-FGELEGWAPSHYLVLDEN 65
Score = 47.9 bits (114), Expect = 7e-08
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 3/68 (4%)
Query: 211 KQVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNET 267
+AY K + G ++V + +G W G P ++ +
Sbjct: 9 TSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQP 68
Query: 268 SVETNGNG 275
+G
Sbjct: 69 DPSGKESG 76
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 61.5 bits (150), Expect = 8e-13
Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKYSE 168
+ + ++ + D+L K+ DI+ +++KD + WW + ++G G P +V+
Sbjct: 3 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE-LNGRRGVFPDNFVKLLPP 61
Score = 50.0 bits (120), Expect = 1e-08
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 224 LKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFIPTNETSVETN 272
L ++ GDI+ + + G WEGELNG+ G FP V+ +P E +
Sbjct: 19 LTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPLEHHHHHH 69
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 61.7 bits (150), Expect = 1e-12
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYVQKYSE 168
VIA + ++ L F + D++ ++ E W G G P VQ +
Sbjct: 9 GYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGS-AGGRSGLFPADIVQPAAA 67
Query: 169 G 169
Sbjct: 68 P 68
Score = 50.9 bits (122), Expect = 7e-09
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 217 NAYDKTALKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGN 274
+ + L GD+IK+ G G G++G FP V+ + S
Sbjct: 18 ITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAAPDFSFSKEQR 77
Query: 275 GDIHNST 281
S+
Sbjct: 78 SGSGPSS 84
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 63.9 bits (155), Expect = 1e-12
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 7 PHDRNSWYFGMMTRQEAQAILLS-EKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIIN- 64
+ W+F ++R++A+ LL+ +G+FL+R+S + G++ L V++ ++ ++
Sbjct: 70 SLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKH 129
Query: 65 -KITNTEQQTCYKIGDKTFSDLPSLLAFYKVH 95
KI N + Y TF L L+ Y
Sbjct: 130 YKIRNLDNGGFYISPRITFPGLHELVRHYTNA 161
Score = 53.5 bits (128), Expect = 5e-09
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 99 TSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGS 157
++P P + VIA + ++ + DL F+K + L ++ + E WW AQ++ +G+ G
Sbjct: 3 SNPPASPLQDNL--VIALHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGF 59
Query: 158 IPVPYVQKY 166
IP +V K
Sbjct: 60 IPFNFVAKA 68
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 61.7 bits (150), Expect = 1e-12
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 104 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
+ K+++ D+L K +IV+ K + WW +G+VG P YV
Sbjct: 11 ERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGS-YNGQVGWFPSNYV 69
Query: 164 QKYSE 168
+ +
Sbjct: 70 TEEGD 74
Score = 50.9 bits (122), Expect = 8e-09
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
L L G + V + +G W G NG+ G FP +V +
Sbjct: 34 LSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDSPLG 78
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 60.8 bits (148), Expect = 1e-12
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWWTAQNISGEVGSIPVPYVQKYS 167
A YD + D+L F + DIL ++ + + E WW + G G P +Q S
Sbjct: 8 LLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCL-LHGRQGLAPANRLQILS 66
Query: 168 E 168
Sbjct: 67 G 67
Score = 46.5 bits (111), Expect = 2e-07
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQ---WEGELNGKTGHFPFTHVEFIP 263
YD L GDI+ + + ++ W+ L+G+ G P ++ +
Sbjct: 14 YDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILS 66
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 60.4 bits (147), Expect = 2e-12
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+ K A + + L F K+DI+ V+ + E+WW + + G G P YV+
Sbjct: 5 SSGVENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQ-ENWWFGE-VHGGRGWFPKSYVK 62
Score = 49.6 bits (119), Expect = 2e-08
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 218 AYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVET 271
A L DII V + W GE++G G FP ++V+ IP +E+ +
Sbjct: 21 AKKDNHLNFSKHDIITVLEQQ-ENWWFGEVHGGRGWFPKSYVKIIPGSESGPSS 73
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 60.4 bits (147), Expect = 2e-12
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 104 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPY 162
+ K A Y +L F + V E W ++G+ G IP Y
Sbjct: 4 GSSGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGT-LNGKTGLIPENY 62
Query: 163 VQKYSE 168
V+ S
Sbjct: 63 VEFLSG 68
Score = 47.3 bits (113), Expect = 1e-07
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 219 YDKTA-----LKLEIGDII-KVTKTNINGQWEGELNGKTGHFPFTHVEFIP 263
Y A L G + V + G EG LNGKTG P +VEF+
Sbjct: 17 YACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLS 67
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 62.4 bits (151), Expect = 2e-12
Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 3/136 (2%)
Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYVQ 164
T A+YDF D +L K+ DI+ +++K ++ WW + I G +G P YV+
Sbjct: 1 GPGTFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGE-IYGRIGWFPSNYVE 59
Query: 165 KYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTAL 224
+ + + + +T T V +V + +
Sbjct: 60 EDYSEYLPETGGGSGSSMTYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEW 119
Query: 225 KLEIGD-IIKVTKTNI 239
+ VT+ ++
Sbjct: 120 TYDDATKTFTVTEHSL 135
Score = 45.8 bits (108), Expect = 2e-06
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 224 LKLEIGDIIKV-TKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNGDIHNSTP 282
L L+ GDIIK+ K G W GE+ G+ G FP +VE + G+G
Sbjct: 22 LSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSEYLPETGGGSGSSMTYKL 81
Query: 283 KTETPT 288
T
Sbjct: 82 ILNGKT 87
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 60.4 bits (147), Expect = 3e-12
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 106 ATKTIEKVIAKYDFDGN-DPDDLPFKKNDILIVVSKD-EEHWWTAQNISGEVGSIPVPYV 163
++ K YDF ++L + +I+ V + + W +N GE G +P YV
Sbjct: 5 SSGMATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYV 64
Query: 164 Q 164
+
Sbjct: 65 E 65
Score = 39.2 bits (92), Expect = 9e-05
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 219 YDKTA------LKLEIGDIIKVTKTNI-NGQWEGEL-NGKTGHFPFTHVEFIPTNETS 268
YD A L + G+II VT N+ G EG+ G+ G P +VE +P +
Sbjct: 16 YDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPNDGKD 73
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 60.0 bits (146), Expect = 3e-12
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH---WWTAQNISGEVGSIPVPYVQK 165
A YD PD+L F+K DI+ V+ +D + WW + G G +P ++
Sbjct: 6 AKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCS-LHGRQGIVPGNRLKI 60
Score = 46.2 bits (110), Expect = 2e-07
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 219 YDKTA-----LKLEIGDIIKVTK---TNINGQWEGELNGKTGHFPFTHVEFIP 263
YD A L GDI+ V + ++G W L+G+ G P ++ +
Sbjct: 10 YDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILV 62
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 59.6 bits (145), Expect = 3e-12
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ----NISGEVGSIPVPYVQ 164
KV+A++ + + DDL F+K+ +IV S ++ W+ + N G P +V
Sbjct: 9 KVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVA 65
Score = 36.9 bits (86), Expect = 4e-04
Identities = 11/42 (26%), Positives = 13/42 (30%), Gaps = 5/42 (11%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNG-----KTGHFPFTHVE 260
L E I VT + GE G FP + V
Sbjct: 24 LNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVA 65
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 59.6 bits (145), Expect = 3e-12
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYS 167
A Y + + D+L ++ D + V+ + ++ W+ + + + G+ P YV S
Sbjct: 8 TPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVS 65
Score = 39.9 bits (94), Expect = 5e-05
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIP 263
L+L GD + V + +G + G K G FP +V +
Sbjct: 24 LELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVS 65
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 59.5 bits (145), Expect = 4e-12
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQ-NISGEVGSIPVPYVQ 164
A + A YD+ D D++ F+ D ++ V ++ W +G G +P Y++
Sbjct: 2 AMANLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61
Query: 165 KYS 167
+
Sbjct: 62 FVN 64
Score = 36.8 bits (86), Expect = 5e-04
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELN--GKTGHFPFTHVEFI 262
YD +A + GD I + +G G + G+TG P ++EF+
Sbjct: 13 YDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV 63
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 59.6 bits (145), Expect = 4e-12
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSI-PVPYVQ 164
+ V A +D+ D+L F K+ I+ V K E WW G+ P YV+
Sbjct: 2 SPTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGD-YGGKKQLWFPSNYVE 60
Query: 165 KYSE 168
+
Sbjct: 61 EMVN 64
Score = 46.5 bits (111), Expect = 2e-07
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGH-FPFTHVEFIPTNE 266
A + L II+ + G W G+ GK FP +VE + E
Sbjct: 16 KAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNPE 66
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 58.7 bits (143), Expect = 6e-12
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+ A Y ++ D++ DI+ V+ D+ WT G G P Y +
Sbjct: 2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54
Score = 45.2 bits (108), Expect = 4e-07
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 219 YDKTA-----LKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVE 260
Y A + ++ GDII V + +G GE +G G FP ++ +
Sbjct: 7 YAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 59.8 bits (145), Expect = 7e-12
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPVPYV 163
+ A Y F+ + D++ F DI+ V K E W G G P YV
Sbjct: 1 GSSGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGS-FQGNFGWFPCNYV 59
Query: 164 QKYSE 168
+K
Sbjct: 60 EKMPS 64
Score = 51.7 bits (124), Expect = 4e-09
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 224 LKLEIGDIIKVTKTNI--NGQWEGELNGKTGHFPFTHVEFIPTNETS 268
+ GDII+V + + G G G G FP +VE +P++E
Sbjct: 22 MSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSENE 68
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 59.1 bits (143), Expect = 1e-11
Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 99 TSPLIKPATKTIEKVIAKYDFDG------NDPDDLPFKKNDILIVVSK-DEEHWWTAQNI 151
+ + + + +A+Y ++ N +LP L V DE+ ++ + +
Sbjct: 6 SGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELL 65
Query: 152 SGEVGSIPVPYVQKYSE 168
G+ G +P +V +
Sbjct: 66 DGQRGLVPSNFVDFVQD 82
Score = 46.8 bits (111), Expect = 3e-07
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 216 PNAYDKTALKLEIGDIIKVT-KTNINGQWEGE-LNGKTGHFPFTHVEFIPTNETSVETN 272
PN + L L G + V + +G +EGE L+G+ G P V+F+ NE+ + +
Sbjct: 32 PNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNESRLAST 90
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 58.7 bits (142), Expect = 1e-11
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 23/91 (25%)
Query: 182 SSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRV----PNAYDKTALKLEIGDIIKVTKT 237
S HH P +VR N +D TAL + GD+I V +
Sbjct: 3 SHHHHHHSSGLVP-------------RGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQ 49
Query: 238 NINGQWEGELNG------KTGHFPFTHVEFI 262
+ +G+W+G ++ + G+FP VE +
Sbjct: 50 HPDGRWKGHIHESQRGTDRIGYFPPGIVEVV 80
Score = 57.2 bits (138), Expect = 4e-11
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 95 HYLDTSPLIKPATKTIEKVIAKYDFDG-NDPDDLPFKKNDILIVVSKDEEHWWT-----A 148
H+ +S L+ KV A DF +DP L + D++ V+ + + W +
Sbjct: 6 HHHHSSGLVPRG---SLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHES 62
Query: 149 QNISGEVGSIPVPYVQKYSE 168
Q + +G P V+ S+
Sbjct: 63 QRGTDRIGYFPPGIVEVVSK 82
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 58.1 bits (141), Expect = 1e-11
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 111 EKVIAKYDFD-GNDPDDLPFKKNDILIVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYSE 168
+V A + D D++ F K D+ IV ++ E+ W N + E G I V++ S
Sbjct: 8 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSG 67
Query: 169 GMS 171
S
Sbjct: 68 PSS 70
Score = 34.6 bits (80), Expect = 0.004
Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 2/45 (4%)
Query: 220 DKTALKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFI 262
D + GD+ V +G + G VE +
Sbjct: 21 DTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 65
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 57.0 bits (138), Expect = 3e-11
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 111 EKVIAKYDFD-GNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQK 165
+V A + D D++ F K D+ IV ++ E+ W N+ E G I V++
Sbjct: 6 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEE 62
Score = 31.6 bits (72), Expect = 0.037
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 10/58 (17%)
Query: 211 KQVRVPNAYDKTA------LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVE 260
++VR T + GD+ V +G + G VE
Sbjct: 6 RRVRA--ILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 61
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 56.8 bits (138), Expect = 3e-11
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTA--QNISGEVGSIPVPYVQ 164
+ Y + D D++ D + +V++D WT + +GE G +P Y++
Sbjct: 3 ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57
Score = 30.6 bits (70), Expect = 0.070
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQW---EGELNGKTGHFPFTHVE 260
Y + + GD I + + W + G+TG P T++
Sbjct: 8 YAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 56.8 bits (138), Expect = 3e-11
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSE 168
+ A + F D+L + +D L+V + E++W+ A N+ +G G P Y + ++
Sbjct: 4 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTK 62
Score = 44.1 bits (105), Expect = 1e-06
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP 263
L+LE+ D + V + +E G G FP + +
Sbjct: 20 LELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT 61
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 57.6 bits (139), Expect = 4e-11
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 99 TSPLIKPATKTIEKVIAKYDFD--------GNDPDDLPFKKNDILIVVSKDEEHWWTAQN 150
+ +A +D+D ++LPFK+ I+ V + +
Sbjct: 6 SGTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGE 65
Query: 151 ISGEVGSIPVPYVQK 165
+G IP V +
Sbjct: 66 TCARLGLIPCNMVSE 80
Score = 45.6 bits (108), Expect = 7e-07
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 224 LKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
L + G IIKV + +G + GE + G P V I ++
Sbjct: 42 LPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSEIQADDEE 87
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 56.6 bits (137), Expect = 4e-11
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 123 DPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLH 179
P ++ KK DIL +++ + WW + ++ G +P YV+K G + L+
Sbjct: 2 GPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDSGTGKELVLALY 57
Score = 45.0 bits (107), Expect = 6e-07
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETS 268
+ ++ GDI+ + + W+ E+N + G P +V+ + +
Sbjct: 6 VTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGK 50
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 56.5 bits (137), Expect = 5e-11
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQK 165
V A +D+ D+L F K+ I+ V K + WW + P YV++
Sbjct: 4 SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEE 58
Score = 43.0 bits (102), Expect = 3e-06
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 217 NAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGH-FPFTHVEFIP 263
A + L II+ + G W G+ GK FP +VE +
Sbjct: 13 KAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI 60
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 55.5 bits (134), Expect = 1e-10
Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 106 ATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWW----TAQNISGEVGSIPVP 161
+ + E + + + L +++++ K+ WW A+ + G P
Sbjct: 3 SGSSGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPAS 62
Query: 162 YVQ 164
+V+
Sbjct: 63 HVK 65
Score = 49.7 bits (119), Expect = 2e-08
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGK-----TGHFPFTHVEFIPTNETSVETNGNG 275
L L G +I + K N +G W+GEL + G FP +HV+ + + +G
Sbjct: 24 LSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSSERASGPSSG 80
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 55.0 bits (133), Expect = 2e-10
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SGEVGSIPVPYVQKYSE 168
+ A + F D+L + +D L+V + E++W+ A N+ +G G P Y + ++
Sbjct: 7 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTK 65
Score = 42.7 bits (101), Expect = 5e-06
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP 263
L+LE+ D + V + +E G G FP + +
Sbjct: 23 LELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT 64
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 55.1 bits (133), Expect = 2e-10
Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 105 PATKTIEKVIAKYDFDGNDP-------DDLPFKKNDILIVVSK-DEEHWWTAQNISGEVG 156
+ + + +IA D+D D L + D+++V D++ ++ + + G G
Sbjct: 2 SSGSSGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGE-LGGHRG 60
Query: 157 SIPVPYVQKYSE 168
+P + S
Sbjct: 61 LVPAHLLDHMSL 72
Score = 50.5 bits (121), Expect = 9e-09
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 212 QVRVPNAYDKTALKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVEFIPTN 265
K L L GD++ V + G + GEL G G P ++ + +
Sbjct: 19 GDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSLH 73
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 55.1 bits (133), Expect = 2e-10
Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 109 TIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS-GEVGSIPVPYVQKYS 167
+ +V F D++ ++ D+++V+ ++ + W + + GE G P + + S
Sbjct: 16 DLPQVEITKAFFAKQADEVTLQQADVVLVLQQE-DGWLYGERLRDGETGWFPEDFARFIS 74
Query: 168 EGMS 171
S
Sbjct: 75 GPSS 78
Score = 46.2 bits (110), Expect = 3e-07
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 212 QVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQWEGE--LNGKTGHFPFTHVEFIP 263
QV + A+ + L+ D++ V + +G GE +G+TG FP FI
Sbjct: 19 QVEITKAFFAKQADEVTLQQADVVLVLQQE-DGWLYGERLRDGETGWFPEDFARFIS 74
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 59.9 bits (145), Expect = 3e-10
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQQ 72
W+ +T EA+ +LL+ +G+FL R S + G+ L V+ N V+H KI NT
Sbjct: 6 WFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHI---KIQNTGD- 61
Query: 73 TCYKI-GDKTFSDLPSLLAFYK 93
Y + G + F+ L L+ +Y
Sbjct: 62 -YYDLYGGEKFATLAELVQYYM 82
Score = 44.5 bits (105), Expect = 2e-05
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTE-- 70
W+ G ++ +EA+ +L + +G+FLVR+S + G++VL V+ + K T
Sbjct: 112 WFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVM 171
Query: 71 ---QQTCYKIG-DKTFSDLPSLLAFYKVHYL 97
Q+ Y +G + F L L+ YK + +
Sbjct: 172 IRCQELKYDVGGGERFDSLTDLVEHYKKNPM 202
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 53.7 bits (129), Expect = 4e-10
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 113 VIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSE 168
+ + D+L + V+ + WW +G++G P YV + +
Sbjct: 4 AFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGS-YNGQIGWFPSNYVLEEVD 58
Score = 41.0 bits (96), Expect = 1e-05
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 219 YDKTA-----LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVE 260
+ A L L G + V + +G W G NG+ G FP +V
Sbjct: 8 FAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVL 54
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 55.5 bits (133), Expect = 4e-10
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 104 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVP 161
+ +A Y+F G+ L + D++ + W+ I G P
Sbjct: 53 GSSGDKERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKS 111
Query: 162 YVQ 164
++
Sbjct: 112 FIH 114
Score = 35.4 bits (81), Expect = 0.004
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGEL---NGKTGHFPFTHVE 260
L L+IGD++++ +T + G L G FP + +
Sbjct: 76 LSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIH 114
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein
tyrosine phosphatase, SHP-1, signaling, hydrolase;
2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 58.7 bits (142), Expect = 5e-10
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
W+ ++ +A+ +L +G+FL R S G++ L V+ ++V+H +I N+
Sbjct: 3 RWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHI---RIQNSG- 58
Query: 72 QTCYKI-GDKTFSDLPSLLAFYK 93
Y + G + F+ L L+ +Y
Sbjct: 59 -DFYDLYGGEKFATLTELVEYYT 80
Score = 32.9 bits (75), Expect = 0.100
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNK 57
WY G M+ +A+ +L ++ + FLVR+S + G++VL V +
Sbjct: 110 WYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQP 154
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 53.9 bits (130), Expect = 5e-10
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 111 EKVIAKYDFD-GNDPDDLPFKKNDILIVVSKDEEH-WWTAQNI-SGEVGSIPVPYVQKYS 167
+KV + GN+ L F + D+L ++ +E+ W ++ + G P Y + S
Sbjct: 8 QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLS 67
Query: 168 E 168
Sbjct: 68 G 68
Score = 44.3 bits (105), Expect = 1e-06
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 220 DKTALKLEIGDIIKVTKTNI-NGQWEGEL--NGKTGHFPFTHVEFIP 263
+KT L GD++ + +G GE G FP ++ + +
Sbjct: 21 NKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLS 67
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 53.1 bits (128), Expect = 7e-10
Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 111 EKVIAKYDFD-GNDPDDLPFKKNDIL-IVVSKDEEHWWTAQN-ISGEVGSIPVPYVQKYS 167
+KV + G++ L F + D++ +++ ++++ W ++ +S G P Y +
Sbjct: 7 QKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE 66
Query: 168 E 168
E
Sbjct: 67 E 67
Score = 46.2 bits (110), Expect = 3e-07
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 208 ARVKQVRVPNAYDKTA------LKLEIGDIIKVTKTNINGQW-EGEL--NGKTGHFPFTH 258
+ +K+ +V + TA L GD+I + W GE + G FP ++
Sbjct: 2 SHMKKQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSY 61
Query: 259 VEFIP 263
+ +
Sbjct: 62 TKLLE 66
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 58.4 bits (141), Expect = 8e-10
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYIINKITNTEQ 71
W+ ++ +A+ +L +G+FL R S G++ L V+ ++V+H +I N+
Sbjct: 3 RWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHI---RIQNSG- 58
Query: 72 QTCYKI-GDKTFSDLPSLLAFYK 93
Y + G + F+ L L+ +Y
Sbjct: 59 -DFYDLYGGEKFATLTELVEYYT 80
Score = 32.6 bits (74), Expect = 0.17
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 12 SWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNK 57
WY G M+ +A+ +L ++ + FLVR+S + G++VL V +
Sbjct: 109 RWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQP 154
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 53.3 bits (128), Expect = 8e-10
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 121 GNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLHL 180
P ++ KK DIL +++ + WW + ++ G +P YV+K G + L+
Sbjct: 2 AMGPREVTMKKGDILTLLNSTNKDWWKVE-VNDRQGFVPAAYVKKLDSGTGKELVLALYD 60
Query: 181 DSSSHHVPQQQTTP 194
S + P
Sbjct: 61 YQESGDNAPSYSPP 74
Score = 46.8 bits (111), Expect = 2e-07
Identities = 11/65 (16%), Positives = 26/65 (40%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNGDIHNSTPK 283
+ ++ GDI+ + + W+ E+N + G P +V+ + + D S
Sbjct: 8 VTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALYDYQESGDN 67
Query: 284 TETPT 288
+ +
Sbjct: 68 APSYS 72
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 52.8 bits (127), Expect = 1e-09
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 111 EKVIAKYDFDGNDP-------DDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYV 163
+++A YD+D + +L F DI+ V + +E + ++G+ G +P ++
Sbjct: 8 RRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFL 67
Query: 164 QKYS 167
++ S
Sbjct: 68 EEVS 71
Score = 49.3 bits (118), Expect = 2e-08
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 212 QVRVPNAYDKTALKLEIGDIIKVT-KTNINGQWEGELNGKTGHFPFTHVEFIP 263
+ PN + L GDII V + + +G + GELNG+ G P +E +
Sbjct: 19 RESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEVS 71
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 53.5 bits (128), Expect = 2e-09
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 107 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK---DEEHWW-------TAQNISGEVG 156
+ I +A D+ D L + ++ V SK +W +++ +G
Sbjct: 19 SHPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLG 78
Query: 157 SIPVPYVQKYSE 168
P V++
Sbjct: 79 YFPSSIVREDQT 90
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 56.3 bits (134), Expect = 4e-09
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSK-DEEHWWTAQNISGEVGSIPVPYVQK 165
A YD++G + D+L FK D L + DE+ W + +G+VG P YV+
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEA 484
Score = 35.9 bits (81), Expect = 0.012
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 217 NAYDKTALKLEIGDIIKVT-KTNINGQWEGEL-NGKTGHFPFTHVEFI 262
+ L + GD + + G +G L NG+ G +P +VE I
Sbjct: 438 EGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAI 485
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 56.1 bits (135), Expect = 4e-09
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 1/94 (1%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQ 164
+ ++ A +D D +L FK D++ V+ WW + ++ G P +V+
Sbjct: 25 ISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGR-VADGEGWFPASFVR 83
Query: 165 KYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKT 198
+S + +
Sbjct: 84 LRVNQDEPADDDAPLAGNSGAEDGGAEAQSSKDQ 117
Score = 43.4 bits (102), Expect = 6e-05
Identities = 12/71 (16%), Positives = 22/71 (30%)
Query: 218 AYDKTALKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNGDI 277
D L + GD+I+V W G + G FP + V + + +
Sbjct: 41 TMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADDDAPLAG 100
Query: 278 HNSTPKTETPT 288
++
Sbjct: 101 NSGAEDGGAEA 111
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 50.4 bits (121), Expect = 7e-09
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 105 PATKTIEKVIAKYDFD-GNDPDDLPFKKNDILIV-VSKDEEHWWTAQNI-SGEVGSIPVP 161
P +V A + G++ L FK+ D++ + V + + W ++ + G P
Sbjct: 2 PLGSGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFS 61
Query: 162 YVQK 165
Y +
Sbjct: 62 YTRV 65
Score = 40.8 bits (96), Expect = 2e-05
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 9/61 (14%)
Query: 211 KQVRVPNAYDKTA------LKLEIGDIIKVTKTNINGQW-EGEL--NGKTGHFPFTHVEF 261
++RV + A L + GD+I + W GE G FPF++
Sbjct: 6 GRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRV 65
Query: 262 I 262
+
Sbjct: 66 L 66
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 50.2 bits (120), Expect = 2e-08
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 98 DTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEH----WWTAQNI-S 152
+S E + Y + + D+L D + + ++ W ++ +
Sbjct: 4 GSSGSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTT 63
Query: 153 GEVGSIPVPYVQKYSE 168
G G +P Y+ K E
Sbjct: 64 GCSGLLPENYITKADE 79
Score = 44.4 bits (105), Expect = 2e-06
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 9/80 (11%)
Query: 205 PAFARVKQVRVPNAYDKTA---LKLEIGDIIKVTKTNINGQ----WEG--ELNGKTGHFP 255
FA + ++V Y L+L GD I ++ G G +G P
Sbjct: 11 IRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLP 70
Query: 256 FTHVEFIPTNETSVETNGNG 275
++ T + +G
Sbjct: 71 ENYITKADECSTWIFHGSSG 90
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 50.5 bits (120), Expect = 2e-08
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 14/72 (19%)
Query: 108 KTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-----EEHWWT---------AQNISG 153
+ KV A++D+ D D+L K D+++V+ +E W + +
Sbjct: 42 GFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEK 101
Query: 154 EVGSIPVPYVQK 165
G P + ++
Sbjct: 102 CRGVFPENFTER 113
Score = 34.7 bits (79), Expect = 0.007
Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 23/101 (22%)
Query: 182 SSSHHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAYDKTA-----LKLEIGDIIKVTK 236
SH T + LP + +V+ +D TA L+L+ GD++ V
Sbjct: 17 RGSHMATVNGAVEGSTTTGRLDLPP-GFMFKVQA--QHDYTATDTDELQLKAGDVVLVIP 73
Query: 237 TNIN-----GQWEG----------ELNGKTGHFPFTHVEFI 262
G G EL G FP E +
Sbjct: 74 FQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 114
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 48.5 bits (115), Expect = 5e-08
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 105 PATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-EEHWWTAQNI-SGEVGSIPVPY 162
P + ++ G L DI+ + + E +WW +N + EVG P
Sbjct: 13 PKMEVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNR 72
Query: 163 VQKY 166
V Y
Sbjct: 73 VHPY 76
Score = 43.1 bits (101), Expect = 4e-06
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 203 KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNINGQW-EGEL--NGKTGHFPFTHV 259
K+ F + P L+L GDI+++TK W EG + G FP V
Sbjct: 14 KMEVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 73
Query: 260 E 260
Sbjct: 74 H 74
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 51.7 bits (124), Expect = 6e-08
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMS 171
+VI YD+ + D+L F K I+ V++K++ WW + +SG+VG P YV+ ++
Sbjct: 4 QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGE-VSGQVGLFPSNYVKLTTDMDP 62
Query: 172 ILS 174
Sbjct: 63 SQQ 65
Score = 35.1 bits (81), Expect = 0.018
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGELNGKTGHFPFTHVEFIPTNETSVETNGNGDIHNSTPK 283
L G II V W+GE++G+ G FP +V+ + S + + + +
Sbjct: 19 LAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDPSQQWCSDLHLLDMLTP 78
Query: 284 TE 285
TE
Sbjct: 79 TE 80
>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 126
Score = 49.4 bits (117), Expect = 7e-08
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 11 NSWYFGMMTRQEAQAILLSE-----KDNGAFLVRDSNTILGNYVLCVKE-NNKVSHYIIN 64
NS + E + + + +G + +R+S+T G ++ E +NKV +Y I
Sbjct: 17 NSVFVNTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSNKVRNYRI- 75
Query: 65 KITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTS 100
+ Y G+ F + S++ Y H L +
Sbjct: 76 ---FEKDSKFYLEGEVLFVSVGSMVEHYHTHVLPSH 108
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine
binding domain, protein tyrosine kinase, signal
transduction, structural genomics; NMR {Homo sapiens}
Length = 118
Score = 48.2 bits (114), Expect = 2e-07
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKEN----NKVSHYIINKITN 68
F ++R EAQ +L + G L+R S + ++ + V HY + +
Sbjct: 23 SCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGP 82
Query: 69 TEQQTCYKIGDK---TFSDLPSLLAFYKVH 95
Y I + + + L +++ ++ H
Sbjct: 83 K-----YVIDVEQPFSCTSLDAVVNYFVSH 107
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 49.3 bits (117), Expect = 2e-07
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 107 TKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNIS--GEVGSIPVPYVQ 164
+A Y+F G+ L + D++ + W+ I G P ++
Sbjct: 14 ADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIH 72
Score = 34.7 bits (79), Expect = 0.017
Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 224 LKLEIGDIIKVTKTNINGQW-EGEL---NGKTGHFPFTHVEFIPTNETSVETNGNGDIHN 279
L L+IGD++++ +T G W G L G FP + + N
Sbjct: 34 LSLQIGDVVRIQET--CGDWYRGYLIKHKMLQGIFPKSFIHIKEVTVEKRRNTENIIPAE 91
Query: 280 STPKTETPT 288
E T
Sbjct: 92 IPLAQEVTT 100
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 46.5 bits (110), Expect = 3e-07
Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 16/81 (19%)
Query: 101 PLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSK---------------DEEHW 145
PL A + A Y F P+DL D+L+V W
Sbjct: 2 PLGSMAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGW 61
Query: 146 WTAQN-ISGEVGSIPVPYVQK 165
N + + G P YV+
Sbjct: 62 MPGLNERTRQRGDFPGTYVEF 82
Score = 32.6 bits (74), Expect = 0.026
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 17/62 (27%)
Query: 224 LKLEIGDIIKVTKTNI---------------NGQWEG--ELNGKTGHFPFTHVEFIPTNE 266
L+L GD++ V++ + G G E + G FP T+VEF+
Sbjct: 28 LELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLGPVA 87
Query: 267 TS 268
+
Sbjct: 88 LA 89
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 45.3 bits (107), Expect = 6e-07
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 112 KVIAKYDFD----GNDPDDLPFKKNDILIVVSKDEEH-WWTAQNI-SGEVGSIPVPYVQK 165
+V +Y G L DI+ + + EH WW +N + EVG P V
Sbjct: 8 EVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHP 67
Query: 166 Y 166
Y
Sbjct: 68 Y 68
Score = 41.9 bits (98), Expect = 1e-05
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 203 KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-NGQWEGEL--NGKTGHFPFTHV 259
K+ F + P L+L GDI+++TK + WEG + G FP V
Sbjct: 6 KMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 65
Query: 260 E 260
Sbjct: 66 H 66
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 47.8 bits (114), Expect = 1e-06
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 115 AKYDFDGNDPDDLP-----FKKNDILIVVSKDEEHWWTAQNISGE-----VGSIPVPYVQ 164
A +D+D F+ D+L V+ +E WW A+ + + +G IP
Sbjct: 6 ALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRV 65
Query: 165 KYSEGMSILSLRNLHLDSSSHH 186
+ E + + S
Sbjct: 66 ERREWSRLKAKDWGSSSGSQGR 87
>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo
sapiens} PDB: 2gto_A
Length = 96
Score = 44.3 bits (104), Expect = 2e-06
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 103 IKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--EEHWWTAQNISGEVGSIPV 160
+ + I A D G ++L FK+ + + ++ E W + G G I
Sbjct: 21 LTGPIQVIHLAKACCDVKG-GKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKT 79
Query: 161 PYVQ 164
V+
Sbjct: 80 TAVE 83
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 43.8 bits (103), Expect = 3e-06
Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 114 IAKYDFDGNDPDDLPFKKNDILIVVSKDE----EHWWTAQNISGEVGSIPVPYVQKYSE 168
A+ +F+ D+ + D++ V+ K + ++ W N G + +++ Y+
Sbjct: 21 QAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDN-GVTKGFVYSSFLKPYNP 78
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 46.7 bits (110), Expect = 4e-06
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 9/88 (10%)
Query: 115 AKYDFDGNDPDDLP-------FKKNDILIVVSKDEEHWWTAQNI--SGEVGSIPVPYVQK 165
+ DD+P F+ D L V K WW + + E+G IP P +
Sbjct: 43 TNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLE 102
Query: 166 YSEGMSILSLRNLHLDSSSHHVPQQQTT 193
+ L S +P + T
Sbjct: 103 NMRLQHEQRAKEFKLHSKEKRMPFFKKT 130
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 45.1 bits (107), Expect = 1e-05
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 18/108 (16%)
Query: 115 AKYDFDGNDPDDLP-----FKKNDILIVVSKDEEHWWTAQNI-----SGEVGSIPVPYVQ 164
A +D+D N D LP FK DIL V + ++ WW A+ + ++G +P
Sbjct: 10 ALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKRRW 69
Query: 165 KYSEGMSILSLRNLHLDSSSHHVPQQQTTPVR--------KTHLEVKL 204
+ S+++ S V + R K + L
Sbjct: 70 ERKMRARDRSVKSEENVLSYEAVQRLSINYTRPVIILGPLKDRINDDL 117
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 45.7 bits (108), Expect = 1e-05
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 14 YFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHY 61
+ GM++R+ A +L G++L+R+S G Y L ++ ++ ++
Sbjct: 54 FHGMISREAADQLL--IVAEGSYLIRESQRQPGTYTLALRFGSQTRNF 99
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal
transduction, transducer, transcription factor; HET:
PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1
b.2.5.5 d.93.1.1 PDB: 1uus_A*
Length = 473
Score = 43.4 bits (101), Expect = 5e-05
Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 12/110 (10%)
Query: 7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLC---VKENNKVSHYII 63
+ +G M RQE L +D G F++R S G + + V+ ++ HY++
Sbjct: 347 TLWQEGIIYGYMGRQEVND-ALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLV 405
Query: 64 NKITNTEQQTCYKIGDKTFSD-LPSLLAFYKVHYLDTSPLIKPATKTIEK 112
+ KTF D L F + P + K
Sbjct: 406 QPNDTAAAK-------KTFPDFLSEHSQFVNLLQWTKDTNGAPRFLKLHK 448
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 42.5 bits (99), Expect = 7e-05
Identities = 13/99 (13%), Positives = 25/99 (25%), Gaps = 14/99 (14%)
Query: 115 AKYDFDGNDPDDLPFKKNDILIVVSKD---------EEHWWTAQNI-----SGEVGSIPV 160
++ + + P L F + D+ V+ W A + E G IP
Sbjct: 9 THFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPN 68
Query: 161 PYVQKYSEGMSILSLRNLHLDSSSHHVPQQQTTPVRKTH 199
+ + SS + +
Sbjct: 69 QSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGL 107
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 1e-04
Identities = 37/191 (19%), Positives = 63/191 (32%), Gaps = 54/191 (28%)
Query: 18 MTRQEAQAILLSEKDNGAF---------LV--RDSNTILGN----YVLCVK-ENNKV-SH 60
+T+++ Q + K N LV + + G Y L + K S
Sbjct: 344 LTQEQVQDYV--NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG 401
Query: 61 YIINKITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAKYDFD 120
++I +E++ F LP F H S L+ PA+ I K + K
Sbjct: 402 LDQSRIPFSERK---LKFSNRF--LPVASPF---H----SHLLVPASDLINKDLVK---- 445
Query: 121 GNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLH- 179
+++ F DI I V + ++ GSI V I+ L +
Sbjct: 446 ----NNVSFNAKDIQIPV----YDTFDGSDLRVLSGSISERIVD------CIIRLP-VKW 490
Query: 180 ---LDSSSHHV 187
+ H+
Sbjct: 491 ETTTQFKATHI 501
Score = 28.5 bits (63), Expect = 3.0
Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 33/140 (23%)
Query: 25 AILLSEKDNGAFLVRDSNTILGNY----VLCVKENNKVSHYIINKITNTEQQTCYKI--G 78
A LL E D + + ++ NY ++ + +K S+ + + I G
Sbjct: 106 AKLLQENDTT---LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 79 ----DKTFSDLPSLLAFYKVHYLDTSPLIKPATKTIEKVIAK-----------YDFDG-- 121
D F +L L Y+ +++ LIK + +T+ ++I +
Sbjct: 163 QGNTDDYFEELRDL---YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 122 NDPDDLPFKKNDIL--IVVS 139
+P + P D L I +S
Sbjct: 220 ENPSNTP--DKDYLLSIPIS 237
Score = 28.5 bits (63), Expect = 3.9
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 9/57 (15%)
Query: 84 DLPSLLAFYKVHYLDTSPL----IKPATKTIE-----KVIAKYDFDGNDPDDLPFKK 131
+ F H LD P + T + +VI D N DD FK+
Sbjct: 489 KWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 41.0 bits (95), Expect = 2e-04
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 117 YDFDGNDPDDLPFKKNDILIVVS---KDEEHWWTA-----QNISGEVGSIPVPYVQKYSE 168
++++ P L F K ++ VV + W A + E G IP +
Sbjct: 113 FEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLA 172
Query: 169 GM 170
+
Sbjct: 173 SV 174
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 40.4 bits (93), Expect = 3e-04
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 14/72 (19%)
Query: 108 KTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD--------------EEHWWTAQNISG 153
+ KV A++D+ D D+L K D+++V+ E W + +
Sbjct: 140 GFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEK 199
Query: 154 EVGSIPVPYVQK 165
G P + ++
Sbjct: 200 CRGVFPENFTER 211
Score = 30.8 bits (68), Expect = 0.42
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 19/136 (13%)
Query: 147 TAQNISGEVGSIPVPYVQKYSEGMSIL----SLRNLHLDSSSHHVPQQQTTPVRKTHLEV 202
A+ G+ P Q+ E + SL + +++ V L++
Sbjct: 78 PAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDL 137
Query: 203 KLPAFARVKQVRVPNAYDKTALKLEIGDIIKVTKTNI-----NGQWEG----------EL 247
+V+ A D L+L+ GD++ V G G +L
Sbjct: 138 PPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKL 197
Query: 248 NGKTGHFPFTHVEFIP 263
G FP E +P
Sbjct: 198 EKCRGVFPENFTERVP 213
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES;
1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A
2l3t_A 3gxw_A 3gxx_A
Length = 197
Score = 40.3 bits (94), Expect = 3e-04
Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK-ENNKVSHYII---NKITN 68
Y+ ++A+ L K+ G F++R S+ + + K + + H I K
Sbjct: 9 PYYFPFNGKQAED-YLRSKERGDFVIRQSSRGDDHLAITWKLDKDLFQHVDIQELEKENP 67
Query: 69 TEQQTCYKIGDKTFSDLPSLLAFY 92
+ + + DL ++ Y
Sbjct: 68 LALGKVLVVEGQRYHDLDQIIVEY 91
Score = 33.3 bits (76), Expect = 0.046
Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 15/96 (15%)
Query: 14 YFGMMTRQEAQAILLSEKDNG------AFLVRDSNTILGNYVLCVK--ENNKVSHYIINK 65
F T++E + F + N G + L K +K+ + + K
Sbjct: 107 KFKAGTKKEVVKFIEDYSKVNPKKSVYYFSLNYENP--GWFYLIFKLNAESKLYIWNV-K 163
Query: 66 ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSP 101
+T+T + + + + + L +K ++
Sbjct: 164 LTHT----GFFLVNYNYPTVIQLCNGFKTLLKSSNT 195
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A
{Antonospora locustae}
Length = 178
Score = 39.5 bits (92), Expect = 4e-04
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 13 WYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVK-ENNKVSHYIINKITNTEQ 71
F E++ L FL+R + G VL +K ++ H I E
Sbjct: 15 PLFKNFNVTESENYL--RSSTDDFLIRKGSR-HGYCVLVIKFASDVFVHMKI-----EEH 66
Query: 72 QTCYKIGDKTFSDLPSLLAFY 92
Y +K F D+ +++ Y
Sbjct: 67 SEHYTCSNKHFEDIDEVISVY 87
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 40.7 bits (94), Expect = 4e-04
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 8/75 (10%)
Query: 104 KPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVS---KDEEHWWTAQ-----NISGEV 155
+ + ++++ P L F K ++ VV + W A + E
Sbjct: 92 ESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVER 151
Query: 156 GSIPVPYVQKYSEGM 170
G IP + +
Sbjct: 152 GIIPNKNRAEQLASV 166
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 39.7 bits (92), Expect = 6e-04
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIP 159
++A D+ ++ K D +V + W + SG ++P
Sbjct: 199 LPLLAVCDYKQ---VEVTVHKGDECQLVGPAQPSHWKVLSSSGSEAAVP 244
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 38.7 bits (89), Expect = 0.002
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 113 VIAKYDFDGNDPDDLP-----FKKNDILIVVSKDEEHWWTAQNI-----SGEVGSIPVPY 162
+ A +D+D F+ D+L V+ +E WW A+ + + ++G IP
Sbjct: 430 IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKR 489
Query: 163 VQKYSEGMSILSLRNLHLDSSSHH 186
+ E + + S
Sbjct: 490 RVERREWSRLKAKDWGSSSGSQGR 513
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain,
peptide complex, alternative splicing, disease mutation,
HOST-virus interaction, phosphoprotein, polymorphism;
1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A
1pks_A 1pkt_A
Length = 83
Score = 35.4 bits (81), Expect = 0.002
Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 16/73 (21%)
Query: 112 KVIAKYDFDGNDPDDLPFKKNDILIVVSK---------------DEEHWWTAQN-ISGEV 155
+ A YD+ +D+ DIL V +E W N +GE
Sbjct: 7 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER 66
Query: 156 GSIPVPYVQKYSE 168
G P YV+
Sbjct: 67 GDFPGTYVEYIGR 79
Score = 31.6 bits (71), Expect = 0.061
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 17/56 (30%)
Query: 224 LKLEIGDIIKVTKTNI---------------NGQWEG--ELNGKTGHFPFTHVEFI 262
+ L +GDI+ V K ++ G G E G+ G FP T+VE+I
Sbjct: 22 IDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYI 77
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome;
2.95A {Homo sapiens}
Length = 450
Score = 37.0 bits (85), Expect = 0.006
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
Query: 111 EKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNISGEVGSIP 159
+ A D+ D K D I+ +E W G +P
Sbjct: 284 IILRALCDYKQ---DQKIVHKGDECILKDNNERSKWYVTGPGGVDMLVP 329
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 36.8 bits (84), Expect = 0.006
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 95 HYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKDEEHWWTAQNI-SG 153
++ + + IA Y D++P + DI+ V + + N G
Sbjct: 427 NFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLG 486
Query: 154 EVGSIPVPYVQ 164
G P V+
Sbjct: 487 RTGLYPSYKVR 497
Score = 36.8 bits (84), Expect = 0.006
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 224 LKLEIGDIIKVTKTNINGQWEGEL--NGKTGHFPFTHVEFIPTNE 266
+ +E GDII V + +G +G G+TG +P V
Sbjct: 459 IPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETV 503
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 35.6 bits (81), Expect = 0.019
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTIL-GNYVLCVKENNKVSHYIINK 65
P + G ++++ +A LL ++ G FL+R S + G E ++
Sbjct: 436 PLWNDGCIMGFISKERERA-LLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEP--D 492
Query: 66 ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLI 103
E T ++ TF D+ + +PL
Sbjct: 493 FHAVEPYTKKELSAVTFPDIIRNYKVMAAENIPENPLK 530
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 35.3 bits (80), Expect = 0.022
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 210 VKQVRVPNAYDKTALKLEIGDIIKVTKTN----INGQW---EGELNGKTGHFPFTHVEFI 262
++ P + L GD+I + +N W E + G FP V +
Sbjct: 579 LQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVM 638
Query: 263 PT 264
PT
Sbjct: 639 PT 640
Score = 30.3 bits (67), Expect = 0.95
Identities = 20/141 (14%), Positives = 43/141 (30%), Gaps = 17/141 (12%)
Query: 33 NGAFLVRDSNTILGNY----VLCVKENNKVSHYIINKITNTEQQTCYKIGDKTFSDLPSL 88
G + V + +L ++ V + + T + Y D+ L
Sbjct: 502 TGVYFVDEQEQVLLELSFPEIMAVSSSRGTKMMAPSFTLATIKGDEYTFTSSNAEDIRDL 561
Query: 89 LAFYKVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLPFKKNDILIVVSKD-----EE 143
+ + ++ +K + + + G + L F K D++I+
Sbjct: 562 VVTF-------LEGLRKRSKYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNS 614
Query: 144 HWWTAQN-ISGEVGSIPVPYV 163
W N + + G P V
Sbjct: 615 GWANGINERTKQRGDFPTDCV 635
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.11
Identities = 33/197 (16%), Positives = 54/197 (27%), Gaps = 71/197 (36%)
Query: 93 KVHYLDTSPLIKPATKTIEKVIAKYDFDGNDPDDLP---FKKNDI-LIVVSKDEEH---- 144
+ Y D + + A +FD D D+P K +I I++SKD
Sbjct: 15 QYQYKDILSVFEDAFVD--------NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 145 --W-----------------------WTAQNISGEVGSIPVPYVQKYSEGMSILSLRNLH 179
W + I E P + Y E L+
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ-RQPSMMTRMYIE-----QRDRLY 120
Query: 180 LDSSS---HHVPQQQTTPVRKTHLEVKLPAFARVKQVRVPNAY---------DKTALKLE 227
D+ ++V + Q + L ++R P KT + L+
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQAL----------LELR-PAKNVLIDGVLGSGKTWVALD 169
Query: 228 IGDIIKVTKTNING-QW 243
+ KV W
Sbjct: 170 VCLSYKVQCKMDFKIFW 186
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 32.9 bits (74), Expect = 0.12
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENN 56
PH + G + +Q+A +L++ K +G FL+R S++ +G + K ++
Sbjct: 460 PHWNDGAILGFVNKQQAHDLLIN-KPDGTFLLRFSDSEIGGITIAWKFDS 508
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 32.6 bits (73), Expect = 0.15
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 4/98 (4%)
Query: 7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVRDSNT-ILGNYVLCVKENNKVSHYIINK 65
P + G ++++ +A+L + G FL+R S + G E ++
Sbjct: 571 PLWNDGCIMGFISKERERALLKD-QQPGTFLLRFSESSREGAITFTWVERSQNGGEP--D 627
Query: 66 ITNTEQQTCYKIGDKTFSDLPSLLAFYKVHYLDTSPLI 103
E T ++ TF D+ + +PL
Sbjct: 628 FHAVEPYTKKELSAVTFPDIIRNYKVMAAENIPENPLK 665
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 31.4 bits (70), Expect = 0.38
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 13/98 (13%)
Query: 7 PHDRNSWYFGMMTRQEAQAILLSEKDNGAFLVR--DSNTILGNYVLCVKENNKVSHYIIN 64
+ G ++++ +AIL K G FL+R +S+ G V+++ S I +
Sbjct: 452 ALWNEGYIMGFISKERERAILS-TKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQS 510
Query: 65 ----------KITNTEQQTCYKIGDKTFSDLPSLLAFY 92
++ E YKI D T + L+ Y
Sbjct: 511 VEPYTKQQLNNMSFAEIIMGYKIMDATNILVSPLVYLY 548
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.5
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 5/25 (20%)
Query: 104 KPATKTIEKVIAKYDFDGNDPDDLP 128
K A K ++ + Y D P
Sbjct: 19 KQALKKLQASLKLY-----ADDSAP 38
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 65
Score = 26.4 bits (58), Expect = 2.8
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 18 MTRQEAQAILLSEKDNGAFLVRDSNTILGNYVLCVKENNKV---SHYIINKI 66
MT E+ IL E+ G + + I + + N+K S Y+ +K+
Sbjct: 1 MTLDESCKILNIEESKGDL---NMDKINNRFNYLFEVNDKEKGGSFYLQSKV 49
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 28.7 bits (64), Expect = 3.0
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 23 AQAI-LLSEKDNGAFLVRDSNTILGNYVLCVKENNKVSHYI----INKITNTEQQTCYKI 77
QA L K+ G F++R S+ + V+ K + + +I + K +
Sbjct: 1033 RQAEDYLRSKERGEFVIRQSSRGDDHLVITWKLDKDLFQHIDIQELEKENPLALGKVLIV 1092
Query: 78 GDKTFSDLPSLLAFY 92
++ ++DL ++ Y
Sbjct: 1093 DNQKYNDLDQIIVEY 1107
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding,
to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Length = 95
Score = 25.8 bits (57), Expect = 7.2
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 104 KPATKTIEK----VIAKYD--FDGNDPDDLPFKKNDILIVVSK 140
K T T+ + +I + +G PD LP + ++ V+SK
Sbjct: 11 KQKTATVARDRLQIIIAQERAQEGQTPDYLPTLRKALMEVLSK 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.394
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,364,138
Number of extensions: 254858
Number of successful extensions: 1158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 881
Number of HSP's successfully gapped: 477
Length of query: 288
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 195
Effective length of database: 4,105,140
Effective search space: 800502300
Effective search space used: 800502300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (25.6 bits)