BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5082
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 99/148 (66%), Gaps = 1/148 (0%)
Query: 14 QQAKQYGSNNRPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILT 73
Q+ +Q + RPVW + SGMG+QWQ MG LM+ F ++ + D LK + + ++L
Sbjct: 480 QEVQQVPGSKRPVWFICSGMGAQWQGMGLSLMRLDRFRDSILRSDQALKPLGLRVSDLLL 539
Query: 74 NEEDKTIFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQ 133
+ D+ + D+I++SFV + +QI L+DLL +G++PDG+IGHS+GE+ C YADG LT E+
Sbjct: 540 ST-DEAVLDDIVSSFVSLTSIQIALIDLLTSLGLQPDGIIGHSLGEVACGYADGCLTQEE 598
Query: 134 VIYAAFARGKASKEIDLIKGMMAAVGKS 161
+ +++ RG KE +++ G MAAVG S
Sbjct: 599 AVLSSYWRGYCIKEANVLPGAMAAVGLS 626
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 5/156 (3%)
Query: 173 NLGRYVYLEEGAQHIPPNAIVIEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDNVEFL 232
NL V +E QH+P +A+V+EIAPH LLQ ++K+SL I L + DN+EF
Sbjct: 738 NLVSPVLFQEALQHVPAHAVVVEIAPHALLQAVLKRSLESSCTIIPLMKKDHR-DNLEFF 796
Query: 233 LEAIGQLYLNGLEPDVNAIYPKIDYPIPPNVPSVTQFLTWDFS----VKSNLGLTTGART 288
L +G+L+L G+ + N ++P +++P P P ++ + WD S V S +G+
Sbjct: 797 LSNVGRLHLAGVSVNPNGLFPPVEFPAPRGTPLISPHIKWDHSQAWDVPSAADFPSGSSC 856
Query: 289 DWWKNIVLGICSKEKYQHLLNYKIGEKFVVPVAAYI 324
+ + +L+++ I + + P Y+
Sbjct: 857 SSVAVYKFDVSPESPDHYLVDHCIDGRVLFPGTGYL 892
>pdb|2JFK|A Chain A, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|B Chain B, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|C Chain C, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|D Chain D, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
Length = 433
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 15 QAKQYGSNNRPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTN 74
+ +Q + RP+W + SGMG+QW+ MG LM+ F ++ + D +K + + +L +
Sbjct: 83 EVQQVPAGERPLWFICSGMGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLS 142
Query: 75 EEDKTIFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQV 134
D++ FD+I++SFV + +QIGL+DLL MG++PDG++GHS+GE+ C YADG L+ E+
Sbjct: 143 T-DESTFDDIVHSFVSLTAIQIGLIDLLSCMGLRPDGIVGHSLGEVACGYADGCLSQEEA 201
Query: 135 IYAAFARGKASKEIDLIKGMMAAVGKS 161
+ AA+ RG+ KE L G MAAVG S
Sbjct: 202 VLAAYWRGQCIKEAHLPPGAMAAVGLS 228
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 173 NLGRYVYLEEGAQHIPPNAIVIEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDNVEFL 232
NL V +E H+P +A+V+EIAPH LLQ ++K+ L P I L + DN+EF
Sbjct: 340 NLVSPVLFQEALWHVPEHAVVLEIAPHALLQAVLKRGLKPSCTIIPLMKKDHR-DNLEFF 398
Query: 233 LEAIGQLYLNGLEPDVNAIYPKIDYPIPPNVPSVT 267
L IG+L+L+G++ + NA++P +++P P P ++
Sbjct: 399 LAGIGRLHLSGIDANPNALFPPVEFPAPRGTPLIS 433
>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|B Chain B, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|C Chain C, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|D Chain D, Structure Of The Mat Domain Of Human Fas
Length = 425
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 15 QAKQYGSNNRPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTN 74
+ +Q + RP+W + SGMG+QW+ MG LM+ F ++ + D +K + + +L +
Sbjct: 83 EVQQVPAGERPLWFICSGMGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLS 142
Query: 75 EEDKTIFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQV 134
D++ FD+I++SFV + +QIGL+DLL MG++PDG++GHS+GE+ C YADG L+ E+
Sbjct: 143 T-DESTFDDIVHSFVSLTAIQIGLIDLLSCMGLRPDGIVGHSLGEVACGYADGCLSQEEA 201
Query: 135 IYAAFARGKASKEIDLIKGMMAAVGKS 161
+ AA+ RG+ KE L G MAAVG S
Sbjct: 202 VLAAYWRGQCIKEAHLPPGAMAAVGLS 228
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 173 NLGRYVYLEEGAQHIPPNAIVIEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDNVEFL 232
NL V +E H+P +A+V+EIAPH LLQ ++K+ L P I L + DN+EF
Sbjct: 340 NLVSPVLFQEALWHVPEHAVVLEIAPHALLQAVLKRGLKPSCTIIPLMKKDHR-DNLEFF 398
Query: 233 LEAIGQLYLNGLEPDVNAIYPKIDYP 258
L IG+L+L+G++ + NA++P +++P
Sbjct: 399 LAGIGRLHLSGIDANPNALFPPVEFP 424
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 15 QAKQYGSNNRPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTN 74
+ +Q + RP+W + SGMG+QW+ MG LM+ F ++ + D +K + + +L +
Sbjct: 483 EVQQVPAGERPLWFICSGMGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLS 542
Query: 75 EEDKTIFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQV 134
D++ FD+I++SFV + +QIGL+DLL MG++PDG++GHS+GE+ C YADG L+ E+
Sbjct: 543 T-DESTFDDIVHSFVSLTAIQIGLIDLLSCMGLRPDGIVGHSLGEVACGYADGCLSQEEA 601
Query: 135 IYAAFARGKASKEIDLIKGMMAAVGKS 161
+ AA+ RG+ KE L G MAAVG S
Sbjct: 602 VLAAYWRGQCIKEAHLPPGAMAAVGLS 628
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 88/161 (54%), Gaps = 9/161 (5%)
Query: 173 NLGRYVYLEEGAQHIPPNAIVIEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDNVEFL 232
NL V +E H+P +A+V+EIAPH LLQ ++K+ L P I L + DN+EF
Sbjct: 740 NLVSPVLFQEALWHVPEHAVVLEIAPHALLQAVLKRGLKPSCTIIPLMKKDHR-DNLEFF 798
Query: 233 LEAIGQLYLNGLEPDVNAIYPKIDYPIPPNVPSVTQFLTWDFSVKSNLGLT------TGA 286
L IG+L+L+G++ + NA++P +++P P P ++ + WD S+ ++ +G+
Sbjct: 799 LAGIGRLHLSGIDANPNALFPPVEFPAPRGTPLISPLIKWDHSLAWDVPAAEDFPNGSGS 858
Query: 287 RTDWWKNIVLGICSKEKYQHLLNYKIGEKFVVPVAAYIDLL 327
+ NI S + Y L+++ + + + P Y+ ++
Sbjct: 859 PSAAIYNIDTSSESPDHY--LVDHTLDGRVLFPATGYLSIV 897
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 3/149 (2%)
Query: 22 NNRPVWLLFSGMGSQWQAMGKDLMKF-PVFARAVAKCD-SVLKENNVDIMNILTNEEDKT 79
+ R V LF G GSQW MG +L+ PVFA + CD S+ + + ++L
Sbjct: 530 DGRNVVFLFPGQGSQWAGMGAELLSSSPVFAGKIRACDESMAPMQDWKVSDVLRQAPGAP 589
Query: 80 IFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAF 139
D + + V + L +L G++P ++GHS GE+ A+ GALT E
Sbjct: 590 GLDRVDVVQPVLFAVMVSLAELWRSYGVEPAAVVGHSQGEIAAAHVAGALTLEDAAKLVV 649
Query: 140 ARGKASKEIDLIKGMMA-AVGKSQIHNIL 167
R + + + GM A A+G++ + L
Sbjct: 650 GRSRLMRSLSGEGGMAAVALGEAAVRERL 678
>pdb|3TZW|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Orthorhombic Apoform At 2.6 A
pdb|3TZX|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZX|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZY|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZY|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZZ|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
pdb|3TZZ|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
Length = 491
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Query: 25 PVWLLFSGMGSQWQAMGKDL-MKFPVFARAVAKCDSVLK-ENNVDIMN-ILTNEEDKTIF 81
PVW+L +G G+Q + MGK L ++ VFA + K D++++ E ++ IL + +D
Sbjct: 141 PVWVL-AGFGAQHRKMGKSLYLRNEVFAAWIEKVDALVQDELGYSVLELILDDAQDY--- 196
Query: 82 DNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFAR 141
I + V I +QI L +LL G KP +IG S+GE AY G L+ A +R
Sbjct: 197 -GIETTQVTIFAIQIALGELLRHHGAKPAAVIGQSLGEAASAYFAGGLSLRDATRAICSR 255
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 14 QQAKQYGSNNRPVWLLFSGMGSQWQAMGKDLMK-FPVFARAVAKCDSVLKEN-NVDIMNI 71
+ A R V +F G G+QWQ +DL++ VFA ++ C+ L + + + ++
Sbjct: 541 RTATGQARTRRGVAXVFPGQGAQWQGXARDLLRESQVFADSIRDCERALAPHVDWSLTDL 600
Query: 72 LTNEEDKTIFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTA 131
L+ D + + V + L L G++P ++GHS GE+ A+ GALT
Sbjct: 601 LSGARPLDRVDVVQPALF---AVXVSLAALWRSHGVEPAAVVGHSQGEIAAAHVAGALTL 657
Query: 132 E 132
E
Sbjct: 658 E 658
>pdb|3IM8|A Chain A, Crystal Structure Of Mcat From Streptococcus Pneumoniae
Length = 307
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 28 LLFSGMGSQWQAMGKDLM-KFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILN 86
LF+G G+Q+ MG+D ++P+ + + VL D+ ++ EEDK +
Sbjct: 6 FLFAGQGAQYLGMGRDFYDQYPIVKETIDRASQVL---GYDLRYLIDTEEDK--LNQTRY 60
Query: 87 SFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASK 146
+ I + + LL E G +PD + G S+GE A GAL E + RG +
Sbjct: 61 TQPAILATSVAIYRLLQEKGYQPDMVAGLSLGEYSALVASGALDFEDAVALVAKRGAYME 120
Query: 147 E 147
E
Sbjct: 121 E 121
>pdb|2C2N|A Chain A, Structure Of Human Mitochondrial Malonyltransferase
pdb|2C2N|B Chain B, Structure Of Human Mitochondrial Malonyltransferase
Length = 339
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 14/143 (9%)
Query: 28 LLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNS 87
LLF G GSQ MG+ L+ +P A VL D++ + + +T+ D ++
Sbjct: 29 LLFPGQGSQVVGMGRGLLNYPRVRELYAAARRVL---GYDLLELSLHGPQETL-DRTVHC 84
Query: 88 FVGIACVQIGLVDLLYEMGIKPD------GLIGHSVGELGCAYADGALTAEQVIYAAFAR 141
I + V+ L+ + +P G SVGE GA+ + +YA R
Sbjct: 85 QPAIFVASLAAVEKLHHL--QPSVIENCVAAAGFSVGEFAALVFAGAMEFAEGLYAVKIR 142
Query: 142 GKASKEID--LIKGMMAAVGKSQ 162
+A +E + GM++ +G+ Q
Sbjct: 143 AEAMQEASEAVPSGMLSVLGQPQ 165
>pdb|2H1Y|A Chain A, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Mcat) From Helicobacter Pylori
pdb|2H1Y|B Chain B, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Mcat) From Helicobacter Pylori
Length = 321
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 28 LLFSGMGSQWQAMGKDLMKFPVFARAV-AKCDSVLKENNVDIMNILTNEEDKTIFDNILN 86
LLF G GSQ MGK + A+ + + + LK VD+ L EE++ + ++
Sbjct: 17 LLFPGQGSQCIGMGKSFYEGHTLAKELFERASNALK---VDMKKTLF-EENELLKESAYT 72
Query: 87 --SFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKA 144
+ ++ + L++ G+KP +GHS+GE+ GAL E+ + RGK
Sbjct: 73 QPAIYLVSYIAYQLLNKQANGGLKPVFALGHSLGEVSAVSLSGALDFEKALKLTHQRGKM 132
Query: 145 SKEIDLIK--GMMAAVGKSQ 162
+E K MM +G S+
Sbjct: 133 MQEACANKDASMMVVLGVSE 152
>pdb|4AMN|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
pdb|4AMP|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 102 LYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKA-SKEIDLIKGMMAAVGK 160
L +G +P G +GHS+GEL GAL A+ + A ARG+A S + GM+
Sbjct: 165 LDRLGARPVGALGHSLGELAALSWAGALDADDTLALARARGEAMSAATEAPSGML----- 219
Query: 161 SQIHNILFHKE--RNLGRYVYLEEGAQHI 187
S ++ +E G V ++ G +H+
Sbjct: 220 SLRADLAAARELAAGTGAVVAVDNGERHV 248
>pdb|4AMM|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 401
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 102 LYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKA-SKEIDLIKGMMAAVGK 160
L +G +P G +GHS+GEL GAL A+ + A ARG+A S + GM+
Sbjct: 162 LDRLGARPVGALGHSLGELAALSWAGALDADDTLALARARGEAMSAATEAPSGML----- 216
Query: 161 SQIHNILFHKE--RNLGRYVYLEEGAQHI 187
S ++ +E G V ++ G +H+
Sbjct: 217 SLRADLAAARELAAGTGAVVAVDNGERHV 245
>pdb|3RGI|A Chain A, Trans-Acting Transferase From Disorazole Synthase
Length = 286
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 54/132 (40%), Gaps = 12/132 (9%)
Query: 29 LFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNSF 88
+F G GSQ + MG+ L F F A+ D VL I + ++ D+ + F
Sbjct: 5 MFPGQGSQAKGMGRAL--FDAFPALTARADGVL---GYSIRALCQDDPDQRLSQT---QF 56
Query: 89 VGIACVQIGLVDLL--YEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASK 146
A + + L E PD L GHS+GE +A G E + RG+
Sbjct: 57 TQPALYVVNALSYLKRREEEAPPDFLAGHSLGEFSALFAAGVFDFETGLALVKKRGELMG 116
Query: 147 EIDLIKGMMAAV 158
D G MAAV
Sbjct: 117 --DARGGGMAAV 126
>pdb|3SBM|A Chain A, Trans-Acting Transferase From Disorazole Synthase In
Complex With Acetate
Length = 281
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 54/132 (40%), Gaps = 12/132 (9%)
Query: 29 LFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNSF 88
+F G GSQ + MG+ L F F A+ D VL I + ++ D+ + F
Sbjct: 5 MFPGQGSQAKGMGRAL--FDAFPALTARADGVL---GYSIRALCQDDPDQRLSQT---QF 56
Query: 89 VGIACVQIGLVDLL--YEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASK 146
A + + L E PD L GHS+GE +A G E + RG+
Sbjct: 57 TQPALYVVNALSYLKRREEEAPPDFLAGHSLGEFSALFAAGVFDFETGLALVKKRGELMG 116
Query: 147 EIDLIKGMMAAV 158
D G MAAV
Sbjct: 117 --DARGGGMAAV 126
>pdb|4AMO|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 102 LYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKA-SKEIDLIKGMMAAVGK 160
L +G +P G +GHS+GEL GAL A+ + A ARG+A S + GM+
Sbjct: 165 LDRLGARPVGALGHSLGELAALSWAGALDADDTLALARARGEAMSVATEAPSGML----- 219
Query: 161 SQIHNILFHKE--RNLGRYVYLEEGAQHI 187
S ++ +E G V ++ G +H+
Sbjct: 220 SLRADLAAARELAAGTGAVVAVDNGERHV 248
>pdb|2CUY|A Chain A, Crystal Structure Of Malonyl Coa-acyl Carrier Protein
Transacylase From Thermus Thermophilus Hb8
pdb|2CUY|B Chain B, Crystal Structure Of Malonyl Coa-acyl Carrier Protein
Transacylase From Thermus Thermophilus Hb8
Length = 305
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 57/148 (38%), Gaps = 22/148 (14%)
Query: 29 LFSGMGSQWQAMGKDLMKFP-----VFARAVAKCDSVLK---ENNVDIMNILTNEEDKTI 80
LF G GS MG+ L + V RA A +LK E + + + N++ +
Sbjct: 5 LFPGQGSHRVGMGRALYEASPAAKEVLDRAEAALPGLLKLMWEGPEEALTLTENQQPALL 64
Query: 81 FDNILNSFVGIACVQIGLVDLLYEMGIKPDGLI-GHSVGELGCAYADGALTAEQVIYAAF 139
E G KP L GHS+GE A G L E +
Sbjct: 65 AAGYAAYRA------------FLEAGGKPPALAAGHSLGEWTAHVAAGTLELEDALRLVR 112
Query: 140 ARGKASKE-IDLIKGMMAAVGKSQIHNI 166
RG+ +E + + +G MAAV K + I
Sbjct: 113 LRGRYMQEAVPVGEGAMAAVLKLPLEEI 140
>pdb|3PTW|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Clostridium Perfringens Atcc 13124
Length = 336
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 20/177 (11%)
Query: 26 VWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEED----KTIF 81
+ LF+G G+Q+ MGK+ ++ V K S + +D+ + N+ + KT F
Sbjct: 4 LGFLFAGQGAQYVGMGKEFFDNFEESKEVFKRSS--EALGIDMEELCFNDPEGLLNKTEF 61
Query: 82 DNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFAR 141
I + ++ L ++G+K G S+GE GA+ E + R
Sbjct: 62 TQ-----PAIITTNMAILTALDKLGVKSHISCGLSLGEYSALIHSGAINFEDGVKLVKKR 116
Query: 142 GKASKE--IDLIKGMMAAVGKS--QIHNILFHKERNLGRYVYLEEGAQHIPPNAIVI 194
GK +E + I GM+A + + Q+ I+ K G + EGA + P IVI
Sbjct: 117 GKFMQEAVAEGIGGMVAVLRMTPEQVDEII-EKSSPYG----IVEGANYNSPGQIVI 168
>pdb|3QAT|A Chain A, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
pdb|3QAT|B Chain B, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
Length = 318
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 10/135 (7%)
Query: 30 FSGMGSQWQAMGKDLMKFPVFARAV-AKCDSVLKENNVDIMNILTNEEDKTIFDNILNSF 88
F G GSQ MGK L + V AR V + D L E DI+ E + N+
Sbjct: 11 FPGQGSQLIGMGKVLTEQFVAARMVFEEVDDALSEKLSDII----FEGPADVLTLTANAQ 66
Query: 89 VGIACVQIGLVDLLYEMGI----KPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKA 144
+ V + ++ ++ ++G+ K + GHS+GE A G + RG A
Sbjct: 67 PALMAVSMAVIRVMEQLGLNVEKKVKFVAGHSLGEYSALCAAGTFSLTDTARLLRIRGNA 126
Query: 145 SK-EIDLIKGMMAAV 158
+ + + +G MAA+
Sbjct: 127 MQAAVAVGEGSMAAL 141
>pdb|3IM9|A Chain A, Crystal Structure Of Mcat From Staphylococcus Aureus
Length = 316
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 8/133 (6%)
Query: 28 LLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIM-NILTNEEDKTIFDNILN 86
++F G G+Q M +DL F +A S K + DI+ + T+EE K N
Sbjct: 14 IIFPGQGAQKVGMAQDL--FNNNDQATEILTSAAKTLDFDILETMFTDEEGK--LGETEN 69
Query: 87 SFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGK-AS 145
+ + L+ L + PD +GHS+GE A L+ E + RG+ +
Sbjct: 70 TQPALLTHSSALLAALKNL--NPDFTMGHSLGEYSSLVAADVLSFEDAVKIVRKRGQLMA 127
Query: 146 KEIDLIKGMMAAV 158
+ G MAAV
Sbjct: 128 QAFPTGVGSMAAV 140
>pdb|3VR2|D Chain D, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|E Chain E, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|F Chain F, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|D Chain D, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|E Chain E, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|F Chain F, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|D Chain D, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|E Chain E, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|F Chain F, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|D Chain D, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|E Chain E, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|F Chain F, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 465
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 63 ENNVDIMNILTN-EEDKTIFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGEL- 120
+ +V + ILT E+DKT L + I QI L LY+ GI+P + S+ L
Sbjct: 302 KGSVTQIPILTXPEDDKTHPIPDLTGY--ITEGQIILTRELYKSGIQPPIDVLPSLSRLK 359
Query: 121 ------GCAYADGALTAEQVIYAAFARGKASKEIDLIKGMMA 156
G D A T Q ++AA+A+GK +KE+ ++ G A
Sbjct: 360 DKGTGAGKTREDHAATXNQ-LFAAYAQGKQAKELAVVLGESA 400
>pdb|3VR6|D Chain D, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|E Chain E, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|F Chain F, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 465
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 95 QIGLVDLLYEMGIKPDGLIGHSVGEL-------GCAYADGALTAEQVIYAAFARGKASKE 147
QI L LY+ GI+P + S+ L G D A T Q ++AA+A+GK +KE
Sbjct: 333 QIILTRELYKSGIQPPIDVLPSLSRLKDKGTGAGKTREDHAATMNQ-LFAAYAQGKQAKE 391
Query: 148 IDLIKGMMA 156
+ ++ G A
Sbjct: 392 LAVVLGESA 400
>pdb|2QC3|A Chain A, Crystal Structure Of Mcat From Mycobacterium Tuberculosis
Length = 303
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 26 VWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNIL 85
+ LL G GSQ + M ++ P A +A K ++D+ + T + I D +
Sbjct: 3 IALLAPGQGSQTEGMLSPWLQLPGAADQIAAWS---KAADLDLARLGTTASTEEITDTAV 59
Query: 86 NSFVGIACVQIGLVDLLYEMGIKPDGLI--GHSVGELGCAYA 125
+ +A + +L + +I GHSVGE+ AYA
Sbjct: 60 AQPLIVAATLLAHQELARRCVLAGKDVIVAGHSVGEI-AAYA 100
>pdb|2QJ3|A Chain A, Mycobacterium Tuberculosis Fabd
pdb|2QJ3|B Chain B, Mycobacterium Tuberculosis Fabd
Length = 322
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 26 VWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNIL 85
+ LL G GSQ + M ++ P A +A K ++D+ + T + I D +
Sbjct: 22 IALLAPGQGSQTEGMLSPWLQLPGAADQIAAWS---KAADLDLARLGTTASTEEITDTAV 78
Query: 86 NSFVGIACVQIGLVDLLYEMGIKPDGLI--GHSVGELGCAYA 125
+ +A + +L + +I GHSVGE+ AYA
Sbjct: 79 AQPLIVAATLLAHQELARRCVLAGKDVIVAGHSVGEI-AAYA 119
>pdb|3GS3|A Chain A, Structure Of The N-Terminal Heat Domain Of Symplekin From
D. Melanogaster
Length = 257
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 206 VKKSLGPETINI-ALTNRSSSVDNVEFLLEAIGQLYLNGLEPDVNAIYPKIDYPIPPNVP 264
VK L P IN+ ++ R +S ++ +++A G +Y NGL+ + + P N+
Sbjct: 83 VKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNIL 142
Query: 265 SVTQFLTWDFSVKSNLGLTTGA 286
S+ + D N G+ T A
Sbjct: 143 SLIKAQILDMIDNENDGIRTNA 164
>pdb|2CDH|4 Chain 4, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|5 Chain 5, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|6 Chain 6, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|7 Chain 7, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|8 Chain 8, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|9 Chain 9, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|M Chain M, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|N Chain N, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|O Chain O, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|P Chain P, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Q Chain Q, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|R Chain R, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 305
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 9/135 (6%)
Query: 28 LLFSGMGSQWQAMGKDLMKFPVFA-RAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILN 86
L+ G G+Q D + P A R A D++ +D+ + T + I D +
Sbjct: 5 LVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAI----GLDLAHFGTKADADEIRDTSVA 60
Query: 87 SFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASK 146
+ +A + L G P + GHSVGE+ A G L + RG A
Sbjct: 61 QPLLVAAGILSAAAL--GTGFTPGAVAGHSVGEITAAVFAGVLDDTAALSLVRRRGLAMA 118
Query: 147 EIDLI--KGMMAAVG 159
E + GM A +G
Sbjct: 119 EAAAVTETGMSALLG 133
>pdb|2CF2|B Chain B, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|K Chain K, Architecture Of Mammalian Fatty Acid Synthase
Length = 304
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 9/135 (6%)
Query: 28 LLFSGMGSQWQAMGKDLMKFPVFA-RAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILN 86
L+ G G+Q D + P A R A D++ +D+ + T + I D +
Sbjct: 4 LVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAI----GLDLAHFGTKADADEIRDTSVA 59
Query: 87 SFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASK 146
+ +A + L G P + GHSVGE+ A G L + RG A
Sbjct: 60 QPLLVAAGILSAAAL--GTGFTPGAVAGHSVGEITAAVFAGVLDDTAALSLVRRRGLAMA 117
Query: 147 EIDLI--KGMMAAVG 159
E + GM A +G
Sbjct: 118 EAAAVTETGMSALLG 132
>pdb|3TQE|A Chain A, Structure Of The Malonyl Coa-Acyl Carrier Protein
Transacylase (Fabd) From Coxiella Burnetii
Length = 316
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 106 GIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKE 147
G KP GHS+GE GAL E+ + RG+ +E
Sbjct: 86 GPKPQVXAGHSLGEYAALVCAGALKFEEAVKLVEKRGQYXQE 127
>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
pdb|4AEF|B Chain B, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
Length = 645
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 22/174 (12%)
Query: 168 FHKERNLGRYVYLEEGAQHIPPNAIVIEI--APHGLLQP---IVKKS--LGPETINIALT 220
FH+E N+ R V ++ H P + EI H LL+ ++K + LG + + +
Sbjct: 93 FHREVNVARIVKSDDLVFHTPSLLYLYEIFGRVHVLLRTQKGVIKGATFLGEKHVPMRKK 152
Query: 221 NRSSSVDNVEFLLEAIGQLYLNGLEPDVNAIYPKIDYPIPPNVPSVTQFLTW-------- 272
D E ++E G LN + K +Y P +F TW
Sbjct: 153 ASDELFDYFEVIVEG-GDKRLNYSFEVLTMEGAKFEYGQFKARPFSIEFPTWVIDRVFYQ 211
Query: 273 ----DFSVKSNLGLTTGARTDWWKNIVLGICSKEKYQHLLNYKIGEKFVVPVAA 322
F+ + + +W ++GI KEK HL+N I ++ P+ +
Sbjct: 212 IMPDKFARSRKIQGIAYPKDKYWGGDLIGI--KEKIDHLVNLGINAIYLTPIFS 263
>pdb|3VOT|A Chain A, Crystal Structure Of L-Amino Acid Ligase From Bacillus
Licheniformis
pdb|3VOT|B Chain B, Crystal Structure Of L-Amino Acid Ligase From Bacillus
Licheniformis
Length = 425
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 13/103 (12%)
Query: 132 EQVIYAAFARGKASKEIDLIKGMMAAVGKSQIHNILFHKERNL---GRYVYLEEGAQHIP 188
E+ +Y A A+ K + ++K + AV IH H E L G +E GA+
Sbjct: 234 EEGVYIAPAQLKEETRLAIVKEVTGAVSALGIHQGPAHTELRLDKDGTPYVIEVGAR--- 290
Query: 189 PNAIVIEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDNVEF 231
I G+ IVK+S G + + L N +++ EF
Sbjct: 291 -------IGGSGVSHYIVKESTGINFMQLVLQNALKPLESSEF 326
>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|C Chain C, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|E Chain E, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|G Chain G, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|I Chain I, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|K Chain K, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 681
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 175 GRYVYLEEGAQHIPP-NAIVIEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDNVEFLL 233
G +YL E I N V+E AP L ++++G + + +A +S VEF++
Sbjct: 219 GNGIYLGERECSIQRRNQKVVEEAPSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIV 278
Query: 234 EAIGQLYL 241
+ Y
Sbjct: 279 DGQKNFYF 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,022,711
Number of Sequences: 62578
Number of extensions: 467619
Number of successful extensions: 1059
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1023
Number of HSP's gapped (non-prelim): 39
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)