Query psy5082
Match_columns 358
No_of_seqs 238 out of 2250
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 16:46:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1202|consensus 100.0 2.2E-56 4.7E-61 446.9 23.3 333 13-353 488-928 (2376)
2 PF00698 Acyl_transf_1: Acyl t 100.0 1.2E-45 2.6E-50 348.9 12.8 217 27-246 1-318 (318)
3 TIGR02816 pfaB_fam PfaB family 100.0 1.5E-40 3.3E-45 327.5 19.1 237 6-254 157-538 (538)
4 COG3321 Polyketide synthase mo 100.0 1.1E-39 2.3E-44 346.5 17.2 300 25-333 526-937 (1061)
5 TIGR02813 omega_3_PfaA polyket 100.0 6.6E-38 1.4E-42 351.7 22.2 230 23-254 578-926 (2582)
6 TIGR00128 fabD malonyl CoA-acy 100.0 7.3E-37 1.6E-41 285.3 16.3 182 25-210 2-287 (290)
7 TIGR03131 malonate_mdcH malona 100.0 4.7E-35 1E-39 273.9 15.4 178 26-210 1-276 (295)
8 smart00827 PKS_AT Acyl transfe 100.0 8.6E-35 1.9E-39 272.5 16.0 181 30-211 1-284 (298)
9 PLN02752 [acyl-carrier protein 100.0 8.1E-35 1.8E-39 277.6 16.1 184 22-210 36-333 (343)
10 COG0331 FabD (acyl-carrier-pro 100.0 3.4E-35 7.4E-40 272.2 12.0 183 24-210 2-290 (310)
11 KOG2926|consensus 99.9 3.9E-25 8.6E-30 199.9 8.2 184 23-210 61-360 (386)
12 PF14765 PS-DH: Polyketide syn 98.6 8.9E-08 1.9E-12 89.2 6.7 57 295-353 18-75 (295)
13 smart00826 PKS_DH PKS_DH. 97.9 2.9E-05 6.3E-10 65.1 6.6 56 295-352 18-74 (167)
14 cd07198 Patatin Patatin-like p 93.9 0.16 3.5E-06 43.3 6.3 47 92-138 10-56 (172)
15 COG1752 RssA Predicted esteras 92.3 0.3 6.6E-06 45.9 6.0 47 92-138 23-69 (306)
16 cd07207 Pat_ExoU_VipD_like Exo 92.2 0.37 8E-06 41.8 6.0 48 92-139 11-58 (194)
17 TIGR02813 omega_3_PfaA polyket 92.1 0.18 3.9E-06 59.8 5.0 55 295-352 2299-2354(2582)
18 cd07205 Pat_PNPLA6_PNPLA7_NTE1 92.0 0.36 7.8E-06 41.2 5.6 46 93-138 13-58 (175)
19 cd07209 Pat_hypo_Ecoli_Z1214_l 91.4 0.42 9.1E-06 42.5 5.5 39 92-130 10-48 (215)
20 cd07210 Pat_hypo_W_succinogene 91.0 0.55 1.2E-05 41.9 5.9 47 92-138 12-58 (221)
21 cd07227 Pat_Fungal_NTE1 Fungal 90.8 0.56 1.2E-05 43.2 5.9 45 92-136 22-66 (269)
22 cd07225 Pat_PNPLA6_PNPLA7 Pata 90.0 0.75 1.6E-05 43.3 6.1 47 92-138 27-73 (306)
23 cd07229 Pat_TGL3_like Triacylg 89.9 0.76 1.6E-05 44.6 6.1 49 90-139 93-141 (391)
24 cd07228 Pat_NTE_like_bacteria 89.5 0.76 1.6E-05 39.3 5.4 43 92-134 12-54 (175)
25 PRK10279 hypothetical protein; 88.6 0.56 1.2E-05 44.0 4.2 37 92-128 17-54 (300)
26 TIGR03101 hydr2_PEP hydrolase, 87.5 2.6 5.6E-05 38.8 7.8 29 98-126 89-117 (266)
27 cd07224 Pat_like Patatin-like 87.2 1.9 4.1E-05 38.8 6.6 51 90-140 9-61 (233)
28 cd07218 Pat_iPLA2 Calcium-inde 86.4 2.1 4.5E-05 38.9 6.4 48 91-138 11-60 (245)
29 TIGR03056 bchO_mg_che_rel puta 85.8 1.4 3E-05 39.7 5.1 29 98-126 85-113 (278)
30 cd07206 Pat_TGL3-4-5_SDP1 Tria 85.5 2 4.4E-05 40.0 6.0 37 91-127 80-116 (298)
31 cd07231 Pat_SDP1-like Sugar-De 85.2 2.4 5.1E-05 39.9 6.2 47 91-138 79-125 (323)
32 cd00493 FabA_FabZ FabA/Z, beta 85.2 0.98 2.1E-05 36.1 3.4 53 302-355 29-92 (131)
33 cd07204 Pat_PNPLA_like Patatin 84.8 2.8 6E-05 38.0 6.4 49 91-139 10-62 (243)
34 cd07220 Pat_PNPLA2 Patatin-lik 82.9 4.3 9.2E-05 37.0 6.8 48 91-138 15-66 (249)
35 cd07221 Pat_PNPLA3 Patatin-lik 82.6 3.9 8.4E-05 37.3 6.5 48 92-139 12-63 (252)
36 PRK11126 2-succinyl-6-hydroxy- 82.1 1.3 2.7E-05 39.3 3.1 33 97-129 55-87 (242)
37 cd07230 Pat_TGL4-5_like Triacy 81.8 3 6.5E-05 41.1 5.8 46 92-138 85-130 (421)
38 cd01288 FabZ FabZ is a 17kD be 81.2 1.9 4.1E-05 34.5 3.5 52 302-354 30-90 (131)
39 cd07208 Pat_hypo_Ecoli_yjju_li 80.6 2.2 4.7E-05 39.1 4.2 37 93-129 11-49 (266)
40 cd07232 Pat_PLPL Patain-like p 80.2 3.6 7.8E-05 40.3 5.7 45 93-138 80-124 (407)
41 TIGR02427 protocat_pcaD 3-oxoa 79.8 4.9 0.00011 34.9 6.1 31 98-128 69-99 (251)
42 cd07219 Pat_PNPLA1 Patatin-lik 78.9 5.6 0.00012 38.4 6.3 49 91-139 23-75 (382)
43 PF07977 FabA: FabA-like domai 78.3 1.9 4.2E-05 35.2 2.8 54 302-356 35-101 (138)
44 cd07223 Pat_PNPLA5-mammals Pat 76.6 8 0.00017 37.4 6.6 51 90-140 19-73 (405)
45 PLN02894 hydrolase, alpha/beta 76.1 9.9 0.00021 37.1 7.5 28 100-127 168-195 (402)
46 TIGR02240 PHA_depoly_arom poly 76.1 2.5 5.5E-05 38.5 3.2 29 99-127 82-110 (276)
47 cd07222 Pat_PNPLA4 Patatin-lik 75.8 4.2 9.1E-05 36.9 4.5 37 91-127 10-50 (246)
48 PF06057 VirJ: Bacterial virul 75.4 9.9 0.00021 33.1 6.3 85 25-132 3-92 (192)
49 PLN02824 hydrolase, alpha/beta 75.3 2.7 5.9E-05 38.7 3.2 31 96-126 90-120 (294)
50 cd07212 Pat_PNPLA9 Patatin-lik 75.0 7.9 0.00017 36.5 6.2 46 95-140 14-64 (312)
51 PRK00870 haloalkane dehalogena 73.7 3.1 6.7E-05 38.5 3.1 29 98-126 105-133 (302)
52 TIGR01750 fabZ beta-hydroxyacy 73.0 4.6 9.9E-05 32.9 3.7 52 302-354 38-100 (140)
53 PRK03592 haloalkane dehalogena 72.6 3.5 7.5E-05 38.0 3.2 30 98-127 83-112 (295)
54 PRK11071 esterase YqiA; Provis 71.8 4 8.7E-05 35.3 3.2 31 99-129 52-82 (190)
55 PF12697 Abhydrolase_6: Alpha/ 71.2 4.5 9.8E-05 34.4 3.4 30 97-126 55-84 (228)
56 PRK08775 homoserine O-acetyltr 70.9 4.1 8.9E-05 38.7 3.3 30 98-127 127-157 (343)
57 PRK00006 fabZ (3R)-hydroxymyri 70.0 7.2 0.00016 32.1 4.2 52 302-354 45-104 (147)
58 PF09752 DUF2048: Uncharacteri 67.5 14 0.00031 35.2 6.0 103 22-128 90-195 (348)
59 TIGR01392 homoserO_Ac_trn homo 67.2 5.3 0.00011 38.0 3.2 30 97-126 115-145 (351)
60 TIGR03343 biphenyl_bphD 2-hydr 67.1 4.7 0.0001 36.5 2.8 30 98-127 91-120 (282)
61 PLN02965 Probable pheophorbida 67.0 4.4 9.5E-05 36.5 2.5 29 98-126 61-90 (255)
62 cd07213 Pat17_PNPLA8_PNPLA9_li 66.1 14 0.0003 34.4 5.7 49 93-141 15-67 (288)
63 PLN02679 hydrolase, alpha/beta 65.8 5.6 0.00012 38.1 3.1 28 98-125 145-172 (360)
64 cd01819 Patatin_and_cPLA2 Pata 65.7 9.6 0.00021 31.8 4.2 34 93-126 11-46 (155)
65 PRK07581 hypothetical protein; 63.6 6.7 0.00014 37.0 3.2 26 101-126 116-142 (339)
66 TIGR01250 pro_imino_pep_2 prol 63.3 6.4 0.00014 35.1 2.9 29 99-127 87-115 (288)
67 cd07211 Pat_PNPLA8 Patatin-lik 62.2 21 0.00045 33.4 6.2 48 95-142 23-76 (308)
68 COG0764 FabA 3-hydroxymyristoy 62.1 11 0.00024 31.3 3.8 53 302-355 43-103 (147)
69 PRK10673 acyl-CoA esterase; Pr 61.9 7.6 0.00017 34.5 3.1 29 100-128 73-101 (255)
70 PRK06765 homoserine O-acetyltr 61.2 8.9 0.00019 37.4 3.6 31 96-126 148-179 (389)
71 PRK10349 carboxylesterase BioH 60.9 8.5 0.00018 34.4 3.2 26 101-126 67-92 (256)
72 PRK00175 metX homoserine O-ace 60.6 8.5 0.00019 37.2 3.4 32 97-128 135-167 (379)
73 PF00561 Abhydrolase_1: alpha/ 60.6 9.3 0.0002 32.9 3.3 30 97-126 33-62 (230)
74 PRK13604 luxD acyl transferase 60.2 8.9 0.00019 36.0 3.2 28 100-127 100-127 (307)
75 PLN02578 hydrolase 59.8 8.4 0.00018 36.7 3.1 30 98-127 142-171 (354)
76 cd07217 Pat17_PNPLA8_PNPLA9_li 59.7 23 0.00049 33.9 6.0 37 106-142 39-75 (344)
77 TIGR03695 menH_SHCHC 2-succiny 58.8 11 0.00023 32.5 3.5 32 98-129 60-91 (251)
78 TIGR03611 RutD pyrimidine util 54.4 12 0.00026 32.8 3.0 31 98-128 70-100 (257)
79 PF07819 PGAP1: PGAP1-like pro 54.0 15 0.00032 32.8 3.5 30 97-126 69-103 (225)
80 PF12000 Glyco_trans_4_3: Gkyc 53.3 9.3 0.0002 32.7 2.0 18 100-117 58-75 (171)
81 COG0596 MhpC Predicted hydrola 52.7 11 0.00024 32.2 2.5 32 95-126 75-106 (282)
82 PRK14875 acetoin dehydrogenase 49.9 15 0.00034 34.7 3.2 29 99-127 188-216 (371)
83 PLN02733 phosphatidylcholine-s 48.9 20 0.00043 35.6 3.8 33 96-128 150-182 (440)
84 TIGR01249 pro_imino_pep_1 prol 48.6 17 0.00037 33.7 3.2 30 99-128 86-115 (306)
85 PRK06489 hypothetical protein; 48.5 22 0.00047 33.9 4.0 26 102-127 147-173 (360)
86 TIGR01749 fabA beta-hydroxyacy 47.6 28 0.0006 29.7 4.0 57 297-355 56-118 (169)
87 PLN02211 methyl indole-3-aceta 47.0 17 0.00037 33.2 2.9 30 97-126 75-105 (273)
88 PRK03204 haloalkane dehalogena 46.9 16 0.00035 33.6 2.7 29 98-126 91-119 (286)
89 TIGR01738 bioH putative pimelo 46.0 21 0.00046 30.7 3.2 24 104-127 61-84 (245)
90 PF01734 Patatin: Patatin-like 44.4 14 0.00029 31.0 1.7 32 95-126 13-45 (204)
91 PF05677 DUF818: Chlamydia CHL 44.0 67 0.0015 30.7 6.2 35 90-124 193-231 (365)
92 PLN03087 BODYGUARD 1 domain co 41.4 22 0.00048 35.7 2.9 28 100-127 266-293 (481)
93 PF01764 Lipase_3: Lipase (cla 40.9 35 0.00075 27.2 3.5 31 96-126 52-82 (140)
94 PF00756 Esterase: Putative es 40.8 24 0.00053 31.4 2.8 36 91-126 96-133 (251)
95 PRK10749 lysophospholipase L2; 40.1 26 0.00057 32.9 3.1 24 103-126 126-149 (330)
96 PRK05174 3-hydroxydecanoyl-(ac 39.6 44 0.00096 28.5 4.0 58 296-355 58-121 (172)
97 COG3946 VirJ Type IV secretory 39.2 72 0.0016 31.2 5.7 73 23-120 259-338 (456)
98 PF05728 UPF0227: Uncharacteri 38.4 32 0.0007 29.8 3.1 28 100-127 51-78 (187)
99 TIGR03607 patatin-related prot 38.1 37 0.00079 36.0 3.9 30 98-127 53-85 (739)
100 PRK10985 putative hydrolase; P 37.9 34 0.00073 32.1 3.4 24 103-126 126-149 (324)
101 cd07216 Pat17_PNPLA8_PNPLA9_li 37.5 77 0.0017 29.6 5.7 35 109-143 43-78 (309)
102 PLN00021 chlorophyllase 36.8 93 0.002 29.3 6.1 22 108-129 126-147 (313)
103 cd07199 Pat17_PNPLA8_PNPLA9_li 36.3 1.2E+02 0.0025 27.4 6.6 34 109-142 35-69 (258)
104 KOG1454|consensus 36.0 31 0.00067 32.7 2.8 29 98-126 118-146 (326)
105 PF11469 Ribonucleas_3_2: Ribo 35.9 1.2E+02 0.0027 23.5 5.4 31 109-139 50-85 (120)
106 TIGR03230 lipo_lipase lipoprot 35.9 33 0.00072 34.0 3.1 21 106-126 117-137 (442)
107 PF06821 Ser_hydrolase: Serine 35.4 24 0.00052 30.0 1.7 19 108-126 55-73 (171)
108 KOG3847|consensus 34.7 24 0.00053 33.2 1.8 19 110-128 243-261 (399)
109 PHA02857 monoglyceride lipase; 34.1 38 0.00083 30.5 3.0 23 104-126 93-115 (276)
110 cd00707 Pancreat_lipase_like P 33.4 33 0.00071 31.6 2.4 23 107-129 111-133 (275)
111 cd01287 FabA FabA, beta-hydrox 32.4 61 0.0013 27.0 3.7 57 297-355 33-102 (150)
112 TIGR03100 hydr1_PEP hydrolase, 32.2 46 0.001 30.4 3.2 21 106-126 98-118 (274)
113 TIGR01836 PHA_synth_III_C poly 32.0 58 0.0012 30.9 4.0 29 98-126 126-154 (350)
114 PF06259 Abhydrolase_8: Alpha/ 31.8 2.3E+02 0.005 24.3 7.2 25 21-45 16-40 (177)
115 cd00519 Lipase_3 Lipase (class 31.8 46 0.001 29.4 3.1 25 102-126 122-146 (229)
116 PLN02385 hydrolase; alpha/beta 31.1 33 0.00072 32.5 2.2 19 108-126 162-180 (349)
117 PF05990 DUF900: Alpha/beta hy 30.5 1.5E+02 0.0032 26.6 6.1 31 94-124 75-109 (233)
118 PF00975 Thioesterase: Thioest 30.0 52 0.0011 28.6 3.1 27 100-126 57-84 (229)
119 COG4188 Predicted dienelactone 28.8 38 0.00081 32.6 2.0 36 105-140 156-191 (365)
120 PF09968 DUF2202: Uncharacteri 28.7 64 0.0014 27.3 3.2 45 97-142 44-97 (162)
121 COG3892 Uncharacterized protei 28.6 57 0.0012 29.7 3.0 28 227-254 182-209 (310)
122 PF05277 DUF726: Protein of un 27.9 49 0.0011 31.7 2.6 31 95-125 205-237 (345)
123 PLN03084 alpha/beta hydrolase 27.3 62 0.0014 31.4 3.3 29 97-125 186-214 (383)
124 KOG2214|consensus 27.1 71 0.0015 32.0 3.6 39 92-131 186-224 (543)
125 cd00741 Lipase Lipase. Lipase 27.0 85 0.0018 25.6 3.7 21 106-126 26-46 (153)
126 KOG2968|consensus 26.9 1.2E+02 0.0026 32.8 5.3 40 92-131 851-890 (1158)
127 PRK11460 putative hydrolase; P 26.9 1E+02 0.0022 27.3 4.5 24 102-125 95-120 (232)
128 KOG4409|consensus 26.7 56 0.0012 31.2 2.7 27 100-126 151-178 (365)
129 COG3208 GrsT Predicted thioest 26.1 67 0.0014 29.1 3.0 15 108-122 74-88 (244)
130 PLN02442 S-formylglutathione h 25.4 62 0.0013 29.8 2.8 26 101-126 136-161 (283)
131 PRK10566 esterase; Provisional 25.2 70 0.0015 28.2 3.1 18 109-126 108-125 (249)
132 PRK05855 short chain dehydroge 25.1 80 0.0017 31.8 3.8 29 98-126 83-112 (582)
133 cd07214 Pat17_isozyme_like Pat 24.8 2E+02 0.0044 27.4 6.3 35 108-142 43-84 (349)
134 PF09863 DUF2090: Uncharacteri 24.8 75 0.0016 29.7 3.1 27 227-253 191-217 (311)
135 PLN02298 hydrolase, alpha/beta 24.7 50 0.0011 30.8 2.1 19 108-126 134-152 (330)
136 KOG2564|consensus 24.2 42 0.00092 31.2 1.4 21 106-126 144-164 (343)
137 PF10230 DUF2305: Uncharacteri 23.6 42 0.00091 30.7 1.3 20 107-126 83-102 (266)
138 cd07215 Pat17_PNPLA8_PNPLA9_li 23.5 1.1E+02 0.0024 28.9 4.2 36 108-143 40-82 (329)
139 PLN02980 2-oxoglutarate decarb 23.0 69 0.0015 37.5 3.1 29 98-126 1435-1463(1655)
140 PF03959 FSH1: Serine hydrolas 22.9 80 0.0017 27.6 2.9 27 99-126 94-120 (212)
141 TIGR02821 fghA_ester_D S-formy 22.8 79 0.0017 28.8 3.0 28 100-127 127-157 (275)
142 PF00151 Lipase: Lipase; Inte 21.1 1.4E+02 0.003 28.4 4.4 32 100-131 140-173 (331)
143 PF06028 DUF915: Alpha/beta hy 21.0 83 0.0018 28.7 2.7 30 96-125 91-120 (255)
144 PF12695 Abhydrolase_5: Alpha/ 20.9 61 0.0013 25.5 1.6 22 106-127 59-80 (145)
145 TIGR01840 esterase_phb esteras 20.8 1.2E+02 0.0026 26.2 3.7 25 102-126 87-113 (212)
146 PLN03219 uncharacterized prote 20.4 1.4E+02 0.0031 23.3 3.5 42 23-67 40-83 (108)
No 1
>KOG1202|consensus
Probab=100.00 E-value=2.2e-56 Score=446.95 Aligned_cols=333 Identities=41% Similarity=0.699 Sum_probs=314.1
Q ss_pred cccccccCCCCCCEEEEeCCCCcchHHHHHHHhccHHHHHHHHHHHHHHhhCCCCcHHHhcCCCCcchhhhhHhHHHHHH
Q psy5082 13 IQQAKQYGSNNRPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNSFVGIA 92 (358)
Q Consensus 13 ~~~~~~~~~~~~~v~fvF~Gqg~~~~~m~~~L~~~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~~q~~~~ 92 (358)
...+.+++...+|+.|+|+|.|+||++|+.+|++.+.||+.+.+|++.|++.|+++.+.|... ++..+++..++.+.+.
T Consensus 488 ~~ev~~~~~~eRPiwfiysGMGsQW~~Ma~~LMkl~~F~dsi~~~ae~l~~~gldv~~vL~~s-~~~tfdn~l~sfvsit 566 (2376)
T KOG1202|consen 488 GPEVQQVPAGERPIWFIYSGMGSQWAGMAKDLMKLERFRDSIQRSAEVLKPFGLDVIDVLTRS-DESTFDNILNSFVSIT 566 (2376)
T ss_pred CcceeecCCCCcceEEEEeCCcchhhHHHHHHhhhHHHHHHHHHHHhhhcccCcchhhhhcCC-ChHHHHHHHHHHHHHH
Confidence 457788888889999999999999999999999999999999999999999999999999988 7777888999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHhccCCHHhHHHHHHHHhhhhhhccccccceEEeecCccc--------
Q psy5082 93 CVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKEIDLIKGMMAAVGKSQIH-------- 164 (358)
Q Consensus 93 a~q~al~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ls~~da~~l~~~r~~~~~~~~~~~g~m~av~~~~~~-------- 164 (358)
|+|+||.++|..+||+||.++|||.||+.|+|+.|++|.|+++..+|+||+.+.++..++|+|+||++++++
T Consensus 567 AiQiaLtDlLs~lgi~PDGIvGHS~GElgc~YaDGclt~EqtvlaAYwRG~sild~~l~kGaMAAVGLsWEq~~~~~P~~ 646 (2376)
T KOG1202|consen 567 AIQIALTDLLSCLGIRPDGIVGHSLGELGCGYADGCLTQEQTVLAAYWRGQSILDTHLPKGAMAAVGLSWEQCKSRCPPD 646 (2376)
T ss_pred HHHHHHHHHHHhcCCCCCcccccccchhcccccccccCHHHHHHHHHHcCceeccccCCCcchhhhcCCHHHHhccCCCc
Confidence 999999999999999999999999999999999999999999999999999999988999999999999988
Q ss_pred -----------------------------------------ccccccc--------------------------------
Q psy5082 165 -----------------------------------------NILFHKE-------------------------------- 171 (358)
Q Consensus 165 -----------------------------------------~~afHs~-------------------------------- 171 (358)
.+|||||
T Consensus 647 ~~paCHNs~D~~TiSGp~a~v~~~v~qL~~~gvFak~V~t~G~aFHS~~m~a~~p~l~~~l~k~i~epK~rsarWlSTSi 726 (2376)
T KOG1202|consen 647 VVPACHNSKDNVTISGPQASVFAFVEQLRAEGVFAKEVRTGGYAFHSPYMEAAAPPLRQSLEKVIPEPKPRSARWLSTSI 726 (2376)
T ss_pred ccccccCCCCceEecCChHHHHHHHHHhhhcCeeeeEecCCCccccCHHHHhhChHHHHHHHHhcCCCCCcccchhhccC
Confidence 8999999
Q ss_pred -------------------ccccCcCchhhhhccCCCCeEEEEeCCCCCcHHHHHhhcCCCceEEeeccCCCCCChHHHH
Q psy5082 172 -------------------RNLGRYVYLEEGAQHIPPNAIVIEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDNVEFL 232 (358)
Q Consensus 172 -------------------~~~~~pV~f~~av~~l~~~~~~vEiGp~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 232 (358)
.|+.+||.|.+|++.++++.+.|||.||..+...+++.+++.++.++.+.|+. .++.+.|
T Consensus 727 pEa~W~s~la~tsSA~Y~vnNl~SPVLF~eAlq~vP~nAv~vEiAPH~LlqAiLkRsL~p~~t~v~Lmkr~h-~~NlEff 805 (2376)
T KOG1202|consen 727 PEAQWHSSLARTSSAEYHVNNLVSPVLFHEALQHVPENAVVVEIAPHGLLQAILKRSLKPSCTNVSLMKRGH-RNNLEFF 805 (2376)
T ss_pred ChhhhcChhhhhcchhhhhhccccHHHHHHHHHhCcccceEEEecchHHHHHHHHhhcCCccceehhhcCcc-cccHHHH
Confidence 89999999999999999999999999999999999999999999999999998 7889999
Q ss_pred HHHHHHHhhcCCCCCCcccCCCCCCCCCCCCCccCCCCCCCCcccccCC-----CCCCcccccceeEEEEecCCcccccc
Q psy5082 233 LEAIGQLYLNGLEPDVNAIYPKIDYPIPPNVPSVTQFLTWDFSVKSNLG-----LTTGARTDWWKNIVLGICSKEKYQHL 307 (358)
Q Consensus 233 ~~~la~L~~~G~~vdw~~~~~~~~~~~~~~~~~~LP~Y~f~~~~~W~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~L 307 (358)
+..+++||..|++++...++|+.++|+++++||.-|..-|||+..|... ..++... ++++++.++..||
T Consensus 806 L~~lgrly~aG~~~qi~~l~p~i~ypv~rGTPmi~~lv~WDHtq~W~~~~f~~gs~s~~a~------~niD~~~edd~yL 879 (2376)
T KOG1202|consen 806 LAGLGRLYAAGIQPQILALFPPIEYPVPRGTPMIGPLVKWDHTQKWLVPKFPGGSGSSAAI------YNIDLSKEDDHYL 879 (2376)
T ss_pred HHHHHHHHHccCCccceeccCCCcccCCCCCcCcccccCccccccccccccCCCCCccceE------EEccCCcccccee
Confidence 9999999999999999999999999999999999999999999999932 2334444 8889999998899
Q ss_pred cCceeCCeEeeehhhHHHHHHHHHHh-cCCCCCc--eEEeeEEeecccc
Q psy5082 308 LNYKIGEKFVVPVAAYIDLLLDFYLK-KNPNAKH--VTIENFRTYEYDE 353 (358)
Q Consensus 308 ~~H~v~g~~v~Paa~yle~a~~a~~~-~~~~~~~--~~~~dv~~~~~~~ 353 (358)
.||.++|+++||+++|+.+||...++ .|..+.+ ++||||.||++-+
T Consensus 880 ~~HtiDGRvLfPaTGymtlaW~tlak~qGldy~ktPVvfEdvv~h~ATI 928 (2376)
T KOG1202|consen 880 ADHTIDGRVLFPATGYMTLAWKTLAKPQGLDYEKTPVVFEDVVFHRATI 928 (2376)
T ss_pred ccceecceEEeccccchhHHHHHHhhhccCCcccCceeeeeeeeeeeEe
Confidence 99999999999999999999999999 8888777 9999999999753
No 2
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=100.00 E-value=1.2e-45 Score=348.91 Aligned_cols=217 Identities=31% Similarity=0.543 Sum_probs=192.0
Q ss_pred EEEeCCCCcchHHHHHHHhc-cHHHHHHHHHHHHHHhhC-CCCcHHHhcCCCCcchhhhhHhHHHHHHHHHHHHHHHHHH
Q psy5082 27 WLLFSGMGSQWQAMGKDLMK-FPVFARAVAKCDSVLKEN-NVDIMNILTNEEDKTIFDNILNSFVGIACVQIGLVDLLYE 104 (358)
Q Consensus 27 ~fvF~Gqg~~~~~m~~~L~~-~p~f~~~~~~~~~~l~~~-g~~l~~~l~~~~~~~~~~~~~~~q~~~~a~q~al~~ll~~ 104 (358)
+|+|||||+||+|||++||+ +|.|++.+++|++.+++. |+++.+.+...+....+.++.+.||++|++|+|++++|++
T Consensus 1 vFlFpGQGsq~~gMg~~L~~~~p~f~~~~~~~~~~l~~~~g~~l~~~l~~~~~~~~l~~~~~~qpai~~~~~al~~~l~~ 80 (318)
T PF00698_consen 1 VFLFPGQGSQYPGMGRDLYENNPVFRETIDRCDEILKELLGFSLLELLFEGPESEDLNDTEYAQPAIFAIQVALARLLRS 80 (318)
T ss_dssp EEEE--TTS--TTTTHHHHHH-HHHHHHHHHHHHHHTSHHTS-HHHHHHHTTHCHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEECCcchhhHhHHHHHHHcChhhHHHHHhhhhhhhcccccchhhhhhcccccccccchheecchhhhhhhhhhhhhcc
Confidence 69999999999999999998 899999999999999884 9999999987633367889999999999999999999999
Q ss_pred cCCCCCcccccCHHHHHHHHHhccCCHHhHHHHHHHHhhhhhhccccccceEEeecCccc--------------------
Q psy5082 105 MGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKEIDLIKGMMAAVGKSQIH-------------------- 164 (358)
Q Consensus 105 ~Gi~P~~viGhS~GE~aAa~~aG~ls~~da~~l~~~r~~~~~~~~~~~g~m~av~~~~~~-------------------- 164 (358)
+|++|++++|||+||++|+|++|++|++|++++++.|+++|.+.. .+|.|++|......
T Consensus 81 ~Gi~P~~v~GhSlGE~aA~~aaG~ls~e~a~~lv~~R~~~m~~~~-~~g~m~av~~~~~~~~~~~~~~v~ia~~Ns~~q~ 159 (318)
T PF00698_consen 81 WGIKPDAVIGHSLGEYAALVAAGALSLEDALRLVYERARLMDEAA-PPGAMLAVRGEEEEEKLALPPDVEIANINSPRQV 159 (318)
T ss_dssp TTHCESEEEESTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHS-TSEEEEEEESHHHHHHHHTTTTEEEEEEEETTEE
T ss_pred cccccceeeccchhhHHHHHHCCccchhhhhhhHHHHHHHHHHhh-hcccccchhhhHHhhhccccccceeeeecccccc
Confidence 999999999999999999999999999999999999999998754 78999999762111
Q ss_pred ----------------------------ccccccc---------------------------------------------
Q psy5082 165 ----------------------------NILFHKE--------------------------------------------- 171 (358)
Q Consensus 165 ----------------------------~~afHs~--------------------------------------------- 171 (358)
++||||+
T Consensus 160 visG~~~~l~~~~~~l~~~~~~~~~l~v~~afHs~~m~~~~~~~~~~l~~~~~~~p~ip~~S~~~g~~~~~~~~~~~~~~ 239 (318)
T PF00698_consen 160 VISGEREALEALVERLKAEGIKAKRLPVSYAFHSPLMEPAADEFREALESIEFRPPKIPVYSNVTGRPYDDPELIAEYWA 239 (318)
T ss_dssp EEEEEHHHHHHHHHHHHHTTSEEEEESSSSETTSGGGHHHHHHHHHHHHTSCSCCCSSEEEETTTSSBEHSHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHhhccceeEEEeeeeccccCchhhhhHHHHHhhhhccccccccccceeecccccccccccchhHHH
Confidence 8999999
Q ss_pred ccccCcCchhhhhccCCCCe--EEEEeCCCCCcHHHHHhhcC----CCceEEeeccCCCCCChHHHHHHHHHHHhhcCCC
Q psy5082 172 RNLGRYVYLEEGAQHIPPNA--IVIEIAPHGLLQPIVKKSLG----PETINIALTNRSSSVDNVEFLLEAIGQLYLNGLE 245 (358)
Q Consensus 172 ~~~~~pV~f~~av~~l~~~~--~~vEiGp~~~l~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~l~~~la~L~~~G~~ 245 (358)
+|+++||+|.++++.+.+.+ +||||||+++|+++++++++ .+..+++++.++. ++...+++++++||+.|++
T Consensus 240 ~~l~~pV~f~~~v~~l~~~g~~~fiEiGP~~~L~~~~~~~l~~~~~~~~~~i~~~~~~~--~~~~~~~~~l~~l~~~Gv~ 317 (318)
T PF00698_consen 240 RQLRSPVRFREAVEALYEDGVRVFIEIGPGSVLTSLVKRILKSENGSDATLIPSLRRGH--DDLDTFLQALAQLFVSGVA 317 (318)
T ss_dssp HHHHSHEEHHHHHHHHHHTTEEEEEEESSSSHHHHHHHHHSTSETTTTSEEEESEBTTB--SCHHHHHHHHHHHHHTT-H
T ss_pred hccCCcCChHHHHHHHHhcCCCEEEEeCchHHHHHHHHHHHhhccCCCeEEEeccCCCC--ChHHHHHHHHHHHHHcCCC
Confidence 89999999999999996654 79999999999999999996 5789999999997 8999999999999999986
Q ss_pred C
Q psy5082 246 P 246 (358)
Q Consensus 246 v 246 (358)
|
T Consensus 318 ~ 318 (318)
T PF00698_consen 318 V 318 (318)
T ss_dssp H
T ss_pred C
Confidence 4
No 3
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=100.00 E-value=1.5e-40 Score=327.49 Aligned_cols=237 Identities=17% Similarity=0.187 Sum_probs=188.9
Q ss_pred ccccccccccccccCC------CCCCEEEEeCCCCcchHHHHHHHhc-cHHHHHHHHHHHHHHhhCCCCcHHHhcCC---
Q psy5082 6 REHKNKKIQQAKQYGS------NNRPVWLLFSGMGSQWQAMGKDLMK-FPVFARAVAKCDSVLKENNVDIMNILTNE--- 75 (358)
Q Consensus 6 ~~~~~~~~~~~~~~~~------~~~~v~fvF~Gqg~~~~~m~~~L~~-~p~f~~~~~~~~~~l~~~g~~l~~~l~~~--- 75 (358)
.+.+.+.....+..+. ..++++|||||||+||+|||++||+ +|+|++.+++|.++ .+.+..+
T Consensus 157 ~~~~~p~G~~f~~~p~~~~~~~~~~~vaFvFpGqGsqy~gMGr~L~~~~P~fr~~ld~~~~L--------~~~L~~~~~~ 228 (538)
T TIGR02816 157 IHYKTPAGSCFSLAPLGSNNDNAKAGLAFVYPGVGTVYADMFNDFHQYFPALFAKLEREGDL--------KAMLQAEDIY 228 (538)
T ss_pred cCCCCCCcceeecCcCccccCCCCCCEEEEECCCchHHHHHHHHHHhhCHHHHHHHHhcCCH--------HHHhcccccc
Confidence 3555666666666554 2578999999999999999999998 99999999998533 3333221
Q ss_pred -CCcchhhhhHhHHHHHHH--HHHHHHHHH-HHcCCCCCcccccCHHHHHHHHHhccCCHHhHHHHHHHHhhhhhhcccc
Q psy5082 76 -EDKTIFDNILNSFVGIAC--VQIGLVDLL-YEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKEIDLI 151 (358)
Q Consensus 76 -~~~~~~~~~~~~q~~~~a--~q~al~~ll-~~~Gi~P~~viGhS~GE~aAa~~aG~ls~~da~~l~~~r~~~~~~~~~~ 151 (358)
++.....++.+.|+++|+ ++|+|+++| ++|||+|++++|||+|||+|+|++|+|+++|++.++..|+++|+.. .
T Consensus 229 ~~~~~~~~~~~l~q~alfav~~~~aLa~ll~~~~GI~Pdav~GHSlGE~aAa~aAGvls~~dal~~v~~rs~L~~~~--~ 306 (538)
T TIGR02816 229 GEDPKHAAEMSLGDLAIAGVGSSYLLTQLLCDEFAIKPDFALGYSKGEASMWASLGVWKNPHALIEKTQTDPIFTSA--I 306 (538)
T ss_pred ccchhhhhhhhhHhHHHHHHHHHHHHHHHHHHhcCCCCCEEeecCHHHHHHHHHhCCCCcHHHHHHHHHhhHHhccc--c
Confidence 022334566788999995 599999999 5899999999999999999999999999999999999999888652 2
Q ss_pred ccceE--------------------EeecCccc-----------------------------------------------
Q psy5082 152 KGMMA--------------------AVGKSQIH----------------------------------------------- 164 (358)
Q Consensus 152 ~g~m~--------------------av~~~~~~----------------------------------------------- 164 (358)
+|.|. +|+++.++
T Consensus 307 rG~mmavr~a~~~~~~~~~~~~~~avV~a~~~~V~~~L~~~~~V~IAaiN~~q~VISG~~~Ai~~l~~~L~~~Gi~~r~L 386 (538)
T TIGR02816 307 SGKLTAVREAWQLDDTAAEIQWNSFVVRCEAAPIEALLKDFPHAYLAIIQGDTCVIAGCEAQCKALLAALGKRGIAANRV 386 (538)
T ss_pred ChhhhhhhhhhccccccccccccceeecCCHHHHHHHhccCCCeEEEEeCCCCeEeeCCHHHHHHHHHHHHhCCeeeeec
Confidence 34444 34444332
Q ss_pred --ccc-----cccc----------------------------------------------ccccCcCchhhhhccCCCCe
Q psy5082 165 --NIL-----FHKE----------------------------------------------RNLGRYVYLEEGAQHIPPNA 191 (358)
Q Consensus 165 --~~a-----fHs~----------------------------------------------~~~~~pV~f~~av~~l~~~~ 191 (358)
.++ |||+ +|+++||+|.++++.+.+.+
T Consensus 387 ~a~HA~pam~~HS~~me~~l~~f~~~l~p~ip~iSnvt~tG~~~~~~~~~d~~~ia~yw~~ql~~PVrF~~~I~~L~~~G 466 (538)
T TIGR02816 387 TAMHTQPALQEHQNVMDFYLQPLCAELPMDIKFISAADLLAKNQNSEQAIDSQSIANSIADTFCQTLDFTALIHHAQEQG 466 (538)
T ss_pred cccccCcccccccHHHHHHHHHHHhhcccCCeeeecccccCcccCCCcCCCHHHHHHHHHHcCCCccCHHHHHHHHHHCC
Confidence 233 5664 56889999999999998876
Q ss_pred --EEEEeCCCCCcHHHHHhhcCCC---------ceEEeeccCCCCCChHHHHHHHHHHHhhcCCCCCCcccCCC
Q psy5082 192 --IVIEIAPHGLLQPIVKKSLGPE---------TINIALTNRSSSVDNVEFLLEAIGQLYLNGLEPDVNAIYPK 254 (358)
Q Consensus 192 --~~vEiGp~~~l~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~l~~~la~L~~~G~~vdw~~~~~~ 254 (358)
+|||+||+++|++++++++... ...++++.++. ++...+++++|+||++|++|||+.+|++
T Consensus 467 v~~FVEIGPg~vLs~lv~~~l~~~~~~~~~~~~~~~l~sl~r~~--~d~~~ll~aLA~L~~~Gv~vdW~~l~~g 538 (538)
T TIGR02816 467 AKLFVEIGADRQNCTLIDKINKQDGASSEQHQPCCTVAANAKGG--EDITSLIKAIAQLISHQIPLSLQPFIDG 538 (538)
T ss_pred CCEEEEeCCChHHHHHHHHHhhcccccccccccceEeccCCCCC--chHHHHHHHHHHHHHCCCCCCchhcCCC
Confidence 7999999999999999987321 36788888886 8899999999999999999999998753
No 4
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.1e-39 Score=346.55 Aligned_cols=300 Identities=23% Similarity=0.303 Sum_probs=255.2
Q ss_pred CEEEEeCCCCcchHHHHHHHhc-cHHHHHHHHHHHHHHhhC-CCCcHHHhcCCCCcchhhhhHhHHHHHHHHHHHHHHHH
Q psy5082 25 PVWLLFSGMGSQWQAMGKDLMK-FPVFARAVAKCDSVLKEN-NVDIMNILTNEEDKTIFDNILNSFVGIACVQIGLVDLL 102 (358)
Q Consensus 25 ~v~fvF~Gqg~~~~~m~~~L~~-~p~f~~~~~~~~~~l~~~-g~~l~~~l~~~~~~~~~~~~~~~q~~~~a~q~al~~ll 102 (358)
+++|+|+|||+||.+||++||+ +|.|+++++.|+..+..+ |+++.+.++.++... +..+...|+++|++|++|+++|
T Consensus 526 ~~vfvf~gqgsq~~~mg~el~~~~p~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-l~~~~~~Qp~lfai~~ala~l~ 604 (1061)
T COG3321 526 KTVFVFPGQGSQWAGMGRELYALEPVFASAFDALEALLHRLLGFSLPEVIFAPDYPF-LESIDFAQPALFAVSVALAALW 604 (1061)
T ss_pred ceEEEeCchHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHcCCcccceecCCCCcc-ccCcchhhhHHHHHHHHHHHHH
Confidence 7999999999999999999998 999999999999998886 999999888773222 6667799999999999999999
Q ss_pred HHcCCCCCcccccCHHHHHHHHHhccCCHHhHHHHHHHHhhhhhhccccccceEEeecCc-cc-----------------
Q psy5082 103 YEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKEIDLIKGMMAAVGKSQ-IH----------------- 164 (358)
Q Consensus 103 ~~~Gi~P~~viGhS~GE~aAa~~aG~ls~~da~~l~~~r~~~~~~~~~~~g~m~av~~~~-~~----------------- 164 (358)
++||++|++|+|||+||++|++++|++|++|+++++..|+++|+.. ...|.|++|.++. +.
T Consensus 605 ~s~gv~p~~viGhS~gE~aaA~~aGv~s~~d~~~~v~~Rg~lm~~~-~~~G~m~~v~~~~~~~~~~~~~~~~~~v~ia~~ 683 (1061)
T COG3321 605 RSWGVIPGAVIGHSLGELAAAVAAGVLSLEDALRVVATRGRLMQQL-AGEGAMLAVELSLLAEVQELLALGRPQVPLAAV 683 (1061)
T ss_pred HhcCCcCccccCcCHHHHHHHHHhccCChhhhhHhhhhcchhhccC-CCCcchhhhhcCccchhhHHhhccccceeEEEe
Confidence 9999999999999999999999999999999999999999999883 3349999997765 22
Q ss_pred ----------------------------------ccccccc---------------------------------------
Q psy5082 165 ----------------------------------NILFHKE--------------------------------------- 171 (358)
Q Consensus 165 ----------------------------------~~afHs~--------------------------------------- 171 (358)
+++|||+
T Consensus 684 n~P~~~vi~g~~~~i~~l~~~~~~~~~~~~~~~v~~a~hs~~m~~~~~~~~~~la~i~~~~p~~p~~S~~~~~~~~~~~~ 763 (1061)
T COG3321 684 NSPQQVVIAGDPEAIAALIARLQAQGVRARRLAVSHAFHSPLMDPILDEFAAALADLAPRPPQIPLISNVTGDLAGEPGG 763 (1061)
T ss_pred cCCceEEecCCHHHHHHHHHHHhccCcccceeeeeeccccHHHHHHHHHHHHHHhhcccCCCCcceeeeeeccccCCccc
Confidence 8899998
Q ss_pred ------ccccCcCchhhhhccCCCCe--EEEEeCCCCCcHHHHHhhcCCCceEEeeccCCCCCChHHHHHHHHHHHhhcC
Q psy5082 172 ------RNLGRYVYLEEGAQHIPPNA--IVIEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDNVEFLLEAIGQLYLNG 243 (358)
Q Consensus 172 ------~~~~~pV~f~~av~~l~~~~--~~vEiGp~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~la~L~~~G 243 (358)
.|+++||+|.++++.+.+.+ +|+|+|||+.|+..+++++...+..++++.++. ++...+...+++||..|
T Consensus 764 d~~yw~~~~r~~v~f~~~i~~~~~~~~~~f~E~~p~p~l~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~~~~~~l~~~g 841 (1061)
T COG3321 764 DAQYWVQHLRQPVRFADAIAAALADGARTFIEVGPGPVLTESIKQTLRDAILSIATLRRDA--PELLSFLAALAQLFVAG 841 (1061)
T ss_pred CHHHHHHHHHhhccHHHHHHHHHhcccceEEEecCCHhHHHHHHHHhhhhhcchhhhcccc--cchhHHHHHHHHHHhcC
Confidence 89999999999999998874 899999999999999999843366777788886 77799999999999999
Q ss_pred CCCCCcccCCCCCCCCCCCCCccCCCCCCCCcccccCCC---CCCcccc--------cceeEEEEecCCcccccccCcee
Q psy5082 244 LEPDVNAIYPKIDYPIPPNVPSVTQFLTWDFSVKSNLGL---TTGARTD--------WWKNIVLGICSKEKYQHLLNYKI 312 (358)
Q Consensus 244 ~~vdw~~~~~~~~~~~~~~~~~~LP~Y~f~~~~~W~~~~---~~~~~~~--------~~~~~~~~~l~~~~~~~L~~H~v 312 (358)
+++||+.++.... .+++.||+|||+|++||+... ......+ .-+..+...+.....+|+.+|.+
T Consensus 842 ~~~dw~~~~~~~~-----~~~v~lp~~~~q~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 916 (1061)
T COG3321 842 VAVDWSPLVYGPD-----GRLVELPTYPFQRQRFWLDPEALGVASHPLLGAVLGRPSSGEVVLQGSLDLLAVPWLADHDV 916 (1061)
T ss_pred CCcCcHhhhcCCc-----cccccCCCCCceeccccccccccccccccccchhccCCCCccccccccccccccchhhhchh
Confidence 9999999886643 227889999999999999542 1000000 11122444455577789999999
Q ss_pred CCeEeeehhhHHHHHHHHHHh
Q psy5082 313 GEKFVVPVAAYIDLLLDFYLK 333 (358)
Q Consensus 313 ~g~~v~Paa~yle~a~~a~~~ 333 (358)
....++|+++|.++++.++..
T Consensus 917 ~~~~~~~~~~~~~~~~~~~~~ 937 (1061)
T COG3321 917 RNVAALPGAAYVELALAAADE 937 (1061)
T ss_pred ccccccccchhhhhhhhhhhh
Confidence 999999999999999988776
No 5
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=100.00 E-value=6.6e-38 Score=351.72 Aligned_cols=230 Identities=28% Similarity=0.374 Sum_probs=196.3
Q ss_pred CCCEEEEeCCCCcchHHHHHHHhc-cHHHHHHHHHHHHHHhhC-CCCcHHHhcCC---------CCcchhhhhHhHHHHH
Q psy5082 23 NRPVWLLFSGMGSQWQAMGKDLMK-FPVFARAVAKCDSVLKEN-NVDIMNILTNE---------EDKTIFDNILNSFVGI 91 (358)
Q Consensus 23 ~~~v~fvF~Gqg~~~~~m~~~L~~-~p~f~~~~~~~~~~l~~~-g~~l~~~l~~~---------~~~~~~~~~~~~q~~~ 91 (358)
.++++|+|||||+||+|||++||+ +|.||+.+++|++.+... +.++.+.++.. .....+.++.++||++
T Consensus 578 ~~kvaflFpGQGSQy~gMgreL~~~~P~fr~~ld~~d~~l~~~~~~~L~~~l~p~~~~~~~~~~~~~~~L~~t~~aQPaI 657 (2582)
T TIGR02813 578 SGKVAALFAGQGSQYLNMGRELACNFPEVRQAAADMDSVFTQAGKGALSPVLYPIPVFNDESRKAQEEALTNTQHAQSAI 657 (2582)
T ss_pred CCceEEEeCCCCchhHHHHHHHHhcCHHHHHHHHHHHHHhhhhcCCcHHHHhccccccccccccchhhhhccchhHHHHH
Confidence 578999999999999999999997 999999999999999876 56777776421 1233567899999999
Q ss_pred HHHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHhccCCHHhHHHHHHHHhhhhhhccc--cccceEEeecCccc-----
Q psy5082 92 ACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKEIDL--IKGMMAAVGKSQIH----- 164 (358)
Q Consensus 92 ~a~q~al~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ls~~da~~l~~~r~~~~~~~~~--~~g~m~av~~~~~~----- 164 (358)
|++|++++++|++|||+|++++|||+|||+|+|++|+||++|++++++.|+++|.+... ..|.|+++.+..+.
T Consensus 658 ~a~q~Al~~lL~~~Gi~Pd~v~GHSlGE~aAa~aAGvls~edal~Lv~~Rg~lm~~~~~~~~~G~M~AV~l~~~~~~~~v 737 (2582)
T TIGR02813 658 GTLSMGQYKLFTQAGFKADMTAGHSFGELSALCAAGVISDDDYMMLAFSRGQAMAAPTGEADIGFMYAVILAVVGSPTVI 737 (2582)
T ss_pred HHHHHHHHHHHHHcCCccceeecCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccCCCCceeEEEEccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999987532 36899988643211
Q ss_pred -------------------------------------------------ccccccc------------------------
Q psy5082 165 -------------------------------------------------NILFHKE------------------------ 171 (358)
Q Consensus 165 -------------------------------------------------~~afHs~------------------------ 171 (358)
++||||+
T Consensus 738 ~~~l~~~~~V~IA~~NsP~qvVISG~~~ai~~l~~~L~~~Gi~a~~L~Vs~AFHSplm~~a~~~f~~~L~~i~~~~P~ip 817 (2582)
T TIGR02813 738 ANCIKDFEGVSIANYNSPTQLVIAGVSTQIQIAAKALKEKGFKAIPLPVSGAFHTPLVAHAQKPFSAAIDKAKFNTPLVP 817 (2582)
T ss_pred HHHhccCCCEEEEEEecCCCEEEECCHHHHHHHHHHHHhCCCeEEECCCCCCcCcHHHHHHHHHHHHHHhhCCCCCCCce
Confidence 7999998
Q ss_pred ----------------------ccccCcCchhhhhccCCCCe--EEEEeCCCCCcHHHHHhhcCC---CceEEeec-cCC
Q psy5082 172 ----------------------RNLGRYVYLEEGAQHIPPNA--IVIEIAPHGLLQPIVKKSLGP---ETINIALT-NRS 223 (358)
Q Consensus 172 ----------------------~~~~~pV~f~~av~~l~~~~--~~vEiGp~~~l~~~~~~~l~~---~~~~~~~~-~~~ 223 (358)
+|+++||+|.++|+.+.+.+ +|||+||+++|+++++++++. ....++.. .++
T Consensus 818 v~SnvtG~~~~~~~~~i~~~~~~ql~~PV~F~~aIe~l~~~G~~~FVEiGPg~vLt~lv~~il~~~~~~~~~v~~~~~~~ 897 (2582)
T TIGR02813 818 LYSNGTGKLHSNDAAAIKKALKNHMLQSVHFSEQLEAMYAAGARVFVEFGPKNILQKLVENTLKDKENELCAISINPNPK 897 (2582)
T ss_pred EEECCCCeEecCchhhHHHHHHHHhhCeecHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHHhhccCCCeeEEeeccCCC
Confidence 78999999999999998775 799999999999999999842 23345544 333
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCCcccCCC
Q psy5082 224 SSVDNVEFLLEAIGQLYLNGLEPDVNAIYPK 254 (358)
Q Consensus 224 ~~~~~~~~l~~~la~L~~~G~~vdw~~~~~~ 254 (358)
. ++...+++++++||+.|+++||-..|..
T Consensus 898 ~--~~~~~l~~a~~~L~~~G~~v~~~~~~~~ 926 (2582)
T TIGR02813 898 G--DSDMQLRQAAVQLAVLGLELTEIDPYQA 926 (2582)
T ss_pred C--CHHHHHHHHHHHHHHCCCCCCCcccccc
Confidence 3 7888999999999999999998776643
No 6
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=100.00 E-value=7.3e-37 Score=285.32 Aligned_cols=182 Identities=26% Similarity=0.347 Sum_probs=162.4
Q ss_pred CEEEEeCCCCcchHHHHHHHhc-cHHHHHHHHHHHHHHhhCCCCcHHHhcCCCCcchhhhhHhHHHHHHHHHHHHHHHHH
Q psy5082 25 PVWLLFSGMGSQWQAMGKDLMK-FPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNSFVGIACVQIGLVDLLY 103 (358)
Q Consensus 25 ~v~fvF~Gqg~~~~~m~~~L~~-~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~~q~~~~a~q~al~~ll~ 103 (358)
+++|+|+|||+||++|+++||+ +|.||+.+++|++++ |+++.+.++.. +...+.++.+.|+++|++||+++++|+
T Consensus 2 ~~~~~f~Gqg~~~~~m~~~l~~~~p~~~~~~~~~~~~l---g~~~~~~~~~~-~~~~~~~~~~~q~~i~~~~~al~~~l~ 77 (290)
T TIGR00128 2 KIAYVFPGQGSQTVGMGKDLYEQYPIAKELFDQASEAL---GYDLKKLCQEG-PAEELNKTQYTQPALYVVSAILYLKLK 77 (290)
T ss_pred CEEEEECCCCcchhhhHHHHHHcCHHHHHHHHHHHHHh---CcCHHHHHhCC-CHHHhccccchhHHHHHHHHHHHHHHH
Confidence 5899999999999999999997 999999999999998 99999998865 445567889999999999999999999
Q ss_pred HcC-CCCCcccccCHHHHHHHHHhccCCHHhHHHHHHHHhhhhhhc-cccccceEEe-ecCccc----------------
Q psy5082 104 EMG-IKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKEI-DLIKGMMAAV-GKSQIH---------------- 164 (358)
Q Consensus 104 ~~G-i~P~~viGhS~GE~aAa~~aG~ls~~da~~l~~~r~~~~~~~-~~~~g~m~av-~~~~~~---------------- 164 (358)
++| |+|++++|||+|||+|++++|++|++|++++++.|+++|++. ....|.|+++ +.+.++
T Consensus 78 ~~g~i~p~~v~GhS~GE~aAa~~aG~ls~eda~~lv~~r~~~~~~~~~~~~g~m~av~~~~~~~~~~~l~~~~~~~v~ia 157 (290)
T TIGR00128 78 EQGGLKPDFAAGHSLGEYSALVAAGALDFETALKLVKKRGELMQEAVPEGGGAMAAVIGLDEEQLAQACEEATENDVDLA 157 (290)
T ss_pred HcCCCCCCEEeecCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEeCCCHHHHHHHHHhcCCCcEEEE
Confidence 999 999999999999999999999999999999999999999875 3346888877 432110
Q ss_pred -------------------------------------ccccccc------------------------------------
Q psy5082 165 -------------------------------------NILFHKE------------------------------------ 171 (358)
Q Consensus 165 -------------------------------------~~afHs~------------------------------------ 171 (358)
.+||||+
T Consensus 158 ~~nsp~~~visG~~~~l~~l~~~l~~~~~~~~~~L~v~~~fHs~~l~~~~~~~~~~l~~~~~~~p~ipi~S~~~g~~~~~ 237 (290)
T TIGR00128 158 NFNSPGQVVISGTKDGVEAAAALFKEMGAKRAVPLEVSGAFHSRFMKPAAEKFAETLEACQFNDPTVPVISNVDAKPYTN 237 (290)
T ss_pred EECCCCCEEEECCHHHHHHHHHHHHHcCCCeEEEcCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCccEEECCCCCccCC
Confidence 6889988
Q ss_pred ---------ccccCcCchhhhhccCCCCe--EEEEeCCCCCcHHHHHhhc
Q psy5082 172 ---------RNLGRYVYLEEGAQHIPPNA--IVIEIAPHGLLQPIVKKSL 210 (358)
Q Consensus 172 ---------~~~~~pV~f~~av~~l~~~~--~~vEiGp~~~l~~~~~~~l 210 (358)
+|+++||+|.++++.+.+.+ +|||+||+++|+++++++.
T Consensus 238 ~~~~~~~~~~~l~~pV~f~~~i~~l~~~g~~~~ie~gp~~~l~~~~~~~~ 287 (290)
T TIGR00128 238 GDRIKEKLSEQLTSPVRWTDSVEKLMARGVTEFAEVGPGKVLTGLIKRIK 287 (290)
T ss_pred HHHHHHHHHHHccCCccHHHHHHHHHHCCCCEEEEECCchHHHHHHHHhc
Confidence 78999999999999997764 7999999999999999875
No 7
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=100.00 E-value=4.7e-35 Score=273.87 Aligned_cols=178 Identities=24% Similarity=0.295 Sum_probs=156.6
Q ss_pred EEEEeCCCCcchHHHHHHHhccHHHHHHHHHHHHHHhhCCCCcHHHhcCCCCcchhhhhHhHHHHHHHHHHHHHHHHHHc
Q psy5082 26 VWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNSFVGIACVQIGLVDLLYEM 105 (358)
Q Consensus 26 v~fvF~Gqg~~~~~m~~~L~~~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~~q~~~~a~q~al~~ll~~~ 105 (358)
++|+|||||+||++|+++|+++|.||+.+++|++.+ |+++.+ +. +.+.+.++.++||++|++||+++++|+++
T Consensus 1 ~~~~F~GqG~q~~~m~~~l~~~p~~~~~~~~~~~~l---~~~~~~-~~---~~~~l~~~~~~qp~i~~~q~al~~~l~~~ 73 (295)
T TIGR03131 1 IALLFPGQGSQRAGMLAELPDHPAVAAVLAEASDVL---GIDPRE-LD---DAEALASTRSAQLCILAAGVAAWRALLAL 73 (295)
T ss_pred CEEEECCcchhhhhHHHHHHhCHHHHHHHHHHHHHh---CcCHHH-cC---CHhhhccchhhhHHHHHHHHHHHHHHHhc
Confidence 589999999999999999966999999999999998 888877 32 23456788999999999999999999999
Q ss_pred CCCCCcccccCHHHHHHHHHhccCCHHhHHHHHHHHhhhhhhccccccceEEe-ecCccc--------------------
Q psy5082 106 GIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKEIDLIKGMMAAV-GKSQIH-------------------- 164 (358)
Q Consensus 106 Gi~P~~viGhS~GE~aAa~~aG~ls~~da~~l~~~r~~~~~~~~~~~g~m~av-~~~~~~-------------------- 164 (358)
|++|++++|||+||++|+|++|++|++|++++++.|+++|++.....+.|+++ +++.++
T Consensus 74 g~~P~~v~GhS~GE~aAa~~aG~~s~e~a~~lv~~r~~~~~~~~~~~~~m~av~~~~~~~~~~~l~~~~v~ia~~Nsp~~ 153 (295)
T TIGR03131 74 LPRPSAVAGYSVGEYAAAVVAGVLTFDDALRLVALRAALMDQAVPGGYGMLAVLGLDLAAVEALIAKHGVYLAIINAPDQ 153 (295)
T ss_pred CCCCcEEeecCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCHHHHHHHHHHcCEEEEEEcCCCC
Confidence 99999999999999999999999999999999999999997654445567665 443221
Q ss_pred ------------------------------ccccccc-------------------------------------------
Q psy5082 165 ------------------------------NILFHKE------------------------------------------- 171 (358)
Q Consensus 165 ------------------------------~~afHs~------------------------------------------- 171 (358)
+.||||+
T Consensus 154 ~visG~~~~l~~l~~~l~~~g~~~~~~l~v~~afHs~~~~~~~~~~~~~l~~~~~~~~~ip~~S~~~g~~~~~~~~~~~~ 233 (295)
T TIGR03131 154 VVIAGSRAALRAVAELARAAGASRAKRLAVRVPSHTPLLAKAAEQFAEALAEIPLAAPRLPYLSGIDARLVRDAAQIRDD 233 (295)
T ss_pred EEEECCHHHHHHHHHHHHhcCCceEEECCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCceEEECCCCeecCCHHHHHHH
Confidence 6899997
Q ss_pred --ccccCcCchhhhhccCCCCe--EEEEeCCCCCcHHHHHhhc
Q psy5082 172 --RNLGRYVYLEEGAQHIPPNA--IVIEIAPHGLLQPIVKKSL 210 (358)
Q Consensus 172 --~~~~~pV~f~~av~~l~~~~--~~vEiGp~~~l~~~~~~~l 210 (358)
+|+++||+|.++++.+.+.+ +|||+||+++|++++++++
T Consensus 234 ~~~~l~~pV~~~~~i~~l~~~g~~~~veiGp~~~l~~~~~~~~ 276 (295)
T TIGR03131 234 LARQIATPVDWHDCMQAAYERGARLVIELGPGDVLTKLANEAF 276 (295)
T ss_pred HHHHhcCCCcHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHhc
Confidence 78999999999999997764 7999999999999999987
No 8
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=100.00 E-value=8.6e-35 Score=272.45 Aligned_cols=181 Identities=31% Similarity=0.570 Sum_probs=162.8
Q ss_pred eCCCCcchHHHHHHHhc-cHHHHHHHHHHHHHHhhC-CCCcHHHhcCCCC-cchhhhhHhHHHHHHHHHHHHHHHHHHcC
Q psy5082 30 FSGMGSQWQAMGKDLMK-FPVFARAVAKCDSVLKEN-NVDIMNILTNEED-KTIFDNILNSFVGIACVQIGLVDLLYEMG 106 (358)
Q Consensus 30 F~Gqg~~~~~m~~~L~~-~p~f~~~~~~~~~~l~~~-g~~l~~~l~~~~~-~~~~~~~~~~q~~~~a~q~al~~ll~~~G 106 (358)
|||||+||++|+++||+ +|.|++.+++|+++++.. |+++.+++...++ ...++++.++|+++|++|++++++|+++|
T Consensus 1 F~GQG~q~~~m~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~~~~~~~l~~~~~~q~~i~~~~~a~~~~l~~~G 80 (298)
T smart00827 1 FTGQGSQWPGMGRELYETEPVFRAALDECDAALQPLLGWSLLDVLFGEDGAASLLRRTEVAQPALFAVQVALARLWRSWG 80 (298)
T ss_pred CCCCchhHHHHHHHHHHcCHHHHHHHHHHHHHHHHhcCCCHHHHHcCCCCchhhhcccchhHHHHHHHHHHHHHHHHHcC
Confidence 89999999999999997 999999999999999887 9999999876522 23567889999999999999999999999
Q ss_pred CCCCcccccCHHHHHHHHHhccCCHHhHHHHHHHHhhhhhhccccccceEEeecCccc----------------------
Q psy5082 107 IKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKEIDLIKGMMAAVGKSQIH---------------------- 164 (358)
Q Consensus 107 i~P~~viGhS~GE~aAa~~aG~ls~~da~~l~~~r~~~~~~~~~~~g~m~av~~~~~~---------------------- 164 (358)
++|++++|||+|||+|+|++|++|++|+++++..|+++|++. ...|.|++++++.++
T Consensus 81 i~p~~~~GhSlGE~aA~~~ag~~~~~~~l~l~~~r~~~~~~~-~~~g~m~av~~~~~~~~~~l~~~~~~~~ia~~ns~~~ 159 (298)
T smart00827 81 VRPDAVVGHSLGEIAAAYVAGVLSLEDAARLVAARGRLMQAL-PGGGAMLAVGLSEEEVEELLAGYGGRVSVAAVNGPSS 159 (298)
T ss_pred CcccEEEecCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc-CCCCeEEEEeCCHHHHHHHHHhcCCcEEEEEEcCCCC
Confidence 999999999999999999999999999999999999999864 457899998776432
Q ss_pred -----------------------------ccccccc--------------------------------------------
Q psy5082 165 -----------------------------NILFHKE-------------------------------------------- 171 (358)
Q Consensus 165 -----------------------------~~afHs~-------------------------------------------- 171 (358)
.+||||+
T Consensus 160 ~visG~~~~l~~l~~~l~~~~~~~~~L~v~~~fHs~~~~~~~~~~~~~l~~~~~~~~~~pv~S~~~g~~~~~~~~~~~~~ 239 (298)
T smart00827 160 VVLSGDEDAVDELAAALEARGIRARRLKVDHAFHSPHMDPILDEFREALAGITPRPPRIPFVSTVTGELIDGAELDDAEY 239 (298)
T ss_pred EEEECCHHHHHHHHHHHHHCCceEEECCCCCCCchHHHHHHHHHHHHHHhhCCCCCCCCcEEeCCCCcccCCCCCCCHHH
Confidence 7899998
Q ss_pred --ccccCcCchhhhhccCCC-Ce--EEEEeCCCCCcHHHHHhhcC
Q psy5082 172 --RNLGRYVYLEEGAQHIPP-NA--IVIEIAPHGLLQPIVKKSLG 211 (358)
Q Consensus 172 --~~~~~pV~f~~av~~l~~-~~--~~vEiGp~~~l~~~~~~~l~ 211 (358)
+++++||+|.++++.+.+ .+ +|||+||+++|+++++++++
T Consensus 240 l~~~l~~pV~~~~~i~~l~~~~g~~~~ie~Gp~~~l~~~~~~~~~ 284 (298)
T smart00827 240 WVRNLREPVRFADAVRALLAEQGVTVFLEVGPHPVLTGPIKQTLP 284 (298)
T ss_pred HHHHhhccEeHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHHHHHh
Confidence 678999999999999985 34 79999999999999999884
No 9
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=100.00 E-value=8.1e-35 Score=277.59 Aligned_cols=184 Identities=24% Similarity=0.276 Sum_probs=162.3
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHhc-cHHHHHHHHHHHHHHhhCCCCcHHHhcCCCCcchhhhhHhHHHHHHHHHHHHHH
Q psy5082 22 NNRPVWLLFSGMGSQWQAMGKDLMK-FPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNSFVGIACVQIGLVD 100 (358)
Q Consensus 22 ~~~~v~fvF~Gqg~~~~~m~~~L~~-~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~~q~~~~a~q~al~~ 100 (358)
.+++++|+|||||+||+||+++ |. +|.|++.+++|++.+ |+++.+++... +.+.+.++.++||++|++||++++
T Consensus 36 ~~~~~a~lFpGQGsq~~gm~~~-~~~~p~~~~~~~~~~~~l---g~~l~~~~~~~-~~~~l~~~~~~qp~i~~~~~a~~~ 110 (343)
T PLN02752 36 YKPTTAFLFPGQGAQAVGMGKE-AAEVPAAKALFDKASEIL---GYDLLDVCVNG-PKEKLDSTVVSQPAIYVASLAAVE 110 (343)
T ss_pred CCCCEEEEECCCCcchhhHHHH-HHhCHHHHHHHHHHHHHh---CCCHHHHHhcC-CHHHHhcchhhhHHHHHHHHHHHH
Confidence 4578999999999999999999 65 999999999999987 99999998776 445678899999999999999999
Q ss_pred HHHHcCCCC------CcccccCHHHHHHHHHhccCCHHhHHHHHHHHhhhhhhc-cccccceEEe-ecCccc--------
Q psy5082 101 LLYEMGIKP------DGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKEI-DLIKGMMAAV-GKSQIH-------- 164 (358)
Q Consensus 101 ll~~~Gi~P------~~viGhS~GE~aAa~~aG~ls~~da~~l~~~r~~~~~~~-~~~~g~m~av-~~~~~~-------- 164 (358)
+|+++|+.| ++++|||+|||+|+|++|+++++++++++..|+++|++. ...+|.|+++ +++.++
T Consensus 111 ~l~~~g~~~~~~~~~~~~~GHSlGE~aA~~~AG~ls~e~al~lv~~R~~~m~~~~~~~~g~m~av~g~~~~~~~~~l~~~ 190 (343)
T PLN02752 111 KLRARDGGQAVIDSVDVCAGLSLGEYTALVFAGALSFEDGLKLVKLRGEAMQAAADAGPSGMVSVIGLDSDKVQELCAAA 190 (343)
T ss_pred HHHhcCCCcccccCCCeeeeccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCccEEEEeCCCHHHHHHHHHHh
Confidence 999999765 577999999999999999999999999999999999865 3457888886 442210
Q ss_pred --------------------------------------------------ccccccc-----------------------
Q psy5082 165 --------------------------------------------------NILFHKE----------------------- 171 (358)
Q Consensus 165 --------------------------------------------------~~afHs~----------------------- 171 (358)
+.||||+
T Consensus 191 ~~~~~~~~~v~IA~~Nsp~~~vIsG~~~~l~~l~~~l~~~~~~~~~~L~v~~pfHsp~m~~~~~~l~~~l~~~~~~~p~i 270 (343)
T PLN02752 191 NEEVGEDDVVQIANYLCPGNYAVSGGKKGIDAVEAKAKSFKARMTVRLAVAGAFHTSFMEPAVDALEAALAAVEIRTPRI 270 (343)
T ss_pred hhccCCCCeEEEEEEcCCCCEEEECcHHHHHHHHHHHHhcCCceEEECCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 6889998
Q ss_pred ----------------------ccccCcCchhhhhccCCCCe--EEEEeCCCCCcHHHHHhhc
Q psy5082 172 ----------------------RNLGRYVYLEEGAQHIPPNA--IVIEIAPHGLLQPIVKKSL 210 (358)
Q Consensus 172 ----------------------~~~~~pV~f~~av~~l~~~~--~~vEiGp~~~l~~~~~~~l 210 (358)
+|+++||+|.++++.+.+.+ .|||+||+++|+++++++.
T Consensus 271 pviS~~tg~~~~~~~~~~~~l~~~l~~PV~~~~~i~~l~~~g~~~~iEiGP~~~L~~l~~~~~ 333 (343)
T PLN02752 271 PVISNVDAQPHSDPATIKKILARQVTSPVQWETTVKTLLEKGLEKSYELGPGKVIAGIVKRVD 333 (343)
T ss_pred eEEEcCCCCccCChHHHHHHHHHHCcCCEEHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHhh
Confidence 78999999999999998775 6999999999999999875
No 10
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=100.00 E-value=3.4e-35 Score=272.18 Aligned_cols=183 Identities=28% Similarity=0.383 Sum_probs=170.0
Q ss_pred CCEEEEeCCCCcchHHHHHHHhc-cHHHHHHHHHHHHHHhhCCCCcHHHhcCCCCcchhhhhHhHHHHHHHHHHHHHHHH
Q psy5082 24 RPVWLLFSGMGSQWQAMGKDLMK-FPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNSFVGIACVQIGLVDLL 102 (358)
Q Consensus 24 ~~v~fvF~Gqg~~~~~m~~~L~~-~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~~q~~~~a~q~al~~ll 102 (358)
.+++|+|||||+||.|||++|++ ++.+++.+++.++.+ ++++.+++++. +++.+..+.++||++++++++.++.|
T Consensus 2 ~~~A~~FpGQGsQ~~gMg~~l~~~~~~a~~~~~~a~~~l---~~~l~~i~~~~-p~~~L~~T~~tQPal~~~s~a~~~~l 77 (310)
T COG0331 2 SKTAFVFPGQGSQSLGMGKDLYENSPEAKETFDEADEAL---GFDLWALVFEG-PEEELNLTQNTQPALLLVSLAAYRVL 77 (310)
T ss_pred CcceEEeCCchHHHHHhHHHHHhccHHHHHHHHHHHHHh---cccHHHHhcCC-CHHHhcccchhhHHHHHHHHHHHHHH
Confidence 47899999999999999999998 999999999999999 89999998876 77788999999999999999999999
Q ss_pred HHcC--CCCCcccccCHHHHHHHHHhccCCHHhHHHHHHHHhhhhhhc-cccccceEEe-ecCccc--------------
Q psy5082 103 YEMG--IKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKEI-DLIKGMMAAV-GKSQIH-------------- 164 (358)
Q Consensus 103 ~~~G--i~P~~viGhS~GE~aAa~~aG~ls~~da~~l~~~r~~~~~~~-~~~~g~m~av-~~~~~~-------------- 164 (358)
++.| ++|+.+.|||+|||+|++++|+++++|+++++..||.+|++. ..+.|.|.++ +++.++
T Consensus 78 ~~~~~~~~p~~~aGHSlGEysAl~~ag~~~~ed~~~Lv~~RG~~M~~a~p~~~g~Maav~gl~~e~v~~~~~~~~~~~~v 157 (310)
T COG0331 78 AEQGLGVKPDFVAGHSLGEYSALAAAGVLSFEDALKLVRKRGKLMQEAVPRGEGGMAAVLGLDDEQVEKACEEAAQGTVV 157 (310)
T ss_pred HHhcCCCCCceeecccHhHHHHHHHcccccHHHHHHHHHHHHHHHHHHccCCCccHHHHcCCCHHHHHHHHHHhccCCeE
Confidence 9866 999999999999999999999999999999999999999997 4467899998 666655
Q ss_pred ----------------------------------------ccccccc---------------------------------
Q psy5082 165 ----------------------------------------NILFHKE--------------------------------- 171 (358)
Q Consensus 165 ----------------------------------------~~afHs~--------------------------------- 171 (358)
+.||||+
T Consensus 158 ~iaN~N~~~QiVIsG~~~ale~a~~~~~~~g~kr~i~l~vs~pfHs~lm~pa~~~~~~~l~~~~~~~~~ipvi~n~~~~~ 237 (310)
T COG0331 158 EIANYNSPGQIVISGTKEALEKAAEILKEAGAKRAIPLPVSGPFHSPLMKPAADELAEALEKVRFSDPLVPVISNVDAKP 237 (310)
T ss_pred EEeeeCCCCcEEEECCHHHHHHHHHHHHHhhhhhhcccCCCchhhhhhhHHHHHHHHHHHHhcCCCCccceeeecccccc
Confidence 8999999
Q ss_pred ------------ccccCcCchhhhhccCCCCe--EEEEeCCCCCcHHHHHhhc
Q psy5082 172 ------------RNLGRYVYLEEGAQHIPPNA--IVIEIAPHGLLQPIVKKSL 210 (358)
Q Consensus 172 ------------~~~~~pV~f~~av~~l~~~~--~~vEiGp~~~l~~~~~~~l 210 (358)
+|+.+||+|.+.+..+.+.| .|+|+||+++|+++++++.
T Consensus 238 ~~~~~~i~~~L~~q~~~pVrW~etv~~l~~~gv~~~~EiGpg~vL~gL~kri~ 290 (310)
T COG0331 238 VLDGEEIRELLAKQLTSPVRWTETVETLKADGVTRFVEIGPGKVLTGLAKRIL 290 (310)
T ss_pred ccCHHHHHHHHHHHhcCCeeHHHHHHHHHhcCceEEEEeCCcHHHHHHHHhhc
Confidence 89999999999999999875 6999999999999999987
No 11
>KOG2926|consensus
Probab=99.91 E-value=3.9e-25 Score=199.86 Aligned_cols=184 Identities=26% Similarity=0.343 Sum_probs=161.7
Q ss_pred CCCEEEEeCCCCcchHHHHHHHhccHHHHHHHHHHHHHHhhCCCCcHHHhcCCCCcchhhhhHhHHHHHHHHHHHHHHHH
Q psy5082 23 NRPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNSFVGIACVQIGLVDLL 102 (358)
Q Consensus 23 ~~~v~fvF~Gqg~~~~~m~~~L~~~p~f~~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~~~~q~~~~a~q~al~~ll 102 (358)
+...+++|||||+||.|||+.++++|..++.+++|.++| |+++++.+.+. +.+.++++.++||+|++..+|..+.|
T Consensus 61 ~e~s~iLFPGQG~q~vgm~q~~l~~p~a~~~~~~A~~vl---~YdLlki~~~g-P~e~ldrT~~~QpAI~~~SlAa~E~l 136 (386)
T KOG2926|consen 61 KETSVILFPGQGAQSVGMGQYLLQNPAARRLFAEASNVL---GYDLLKICVNG-PKEKLDRTVIAQPAIDVSSLAALEQL 136 (386)
T ss_pred ccceEEEeCCCChhhhhhhHHHHhCcchhHHHHHHHHHh---hHHHHHHHhcC-ccchhhcccccccceecccHHHHHhc
Confidence 346799999999999999999999999999999999999 99999999887 56677889999999999999999999
Q ss_pred HHcC---CC-CCcccccCHHHHHHHHHhccCCHHhHHHHHHHHhhhhhhc-cccccceEEe-ecCccc------------
Q psy5082 103 YEMG---IK-PDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKEI-DLIKGMMAAV-GKSQIH------------ 164 (358)
Q Consensus 103 ~~~G---i~-P~~viGhS~GE~aAa~~aG~ls~~da~~l~~~r~~~~~~~-~~~~g~m~av-~~~~~~------------ 164 (358)
+.++ ++ -++..|||+|||+|.+.+|+|++.++++++..|+..|++. ..-+++|..+ +.+..+
T Consensus 137 ~~~~p~~ie~~~~~aGfSlGEy~alvfa~aLsFs~alKlVk~Ra~AMs~a~~~~~~~m~~~~~~p~sk~~~~~~~a~~~~ 216 (386)
T KOG2926|consen 137 RLLGPSIIENLVVTAGFSLGEYAALVFAGALSFSSALKLVKARAEAMSEASELVASGMVMILGLPTSKVQKACASANQLS 216 (386)
T ss_pred cccCcchhheeeeeccccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccceeecCcHhHHHHHHhhhHHHh
Confidence 9988 44 5677899999999999999999999999999999999986 3445666655 333222
Q ss_pred ------------------------------------------------ccccccc-------------------------
Q psy5082 165 ------------------------------------------------NILFHKE------------------------- 171 (358)
Q Consensus 165 ------------------------------------------------~~afHs~------------------------- 171 (358)
+.||||+
T Consensus 217 ~~qe~~~~~VANyl~~~~~VvsG~~~~Le~lee~~~sf~~~r~~~LaVsgAFHTr~MepAvepl~~Al~~vei~~p~~pV 296 (386)
T KOG2926|consen 217 ASQEYPVCEVANYLSPGQRVVSGLVKALESLEENAKSFKIRRMKRLAVSGAFHTRLMEPAVEPLTKALKAVEIKNPVIPV 296 (386)
T ss_pred hhccCCeeeeeccCCCCcEEeeCcHHHHHHHHHHHHhhhhhhheeeeeccccchhhhhhhHHHHHHHHHHHHhcCCCcce
Confidence 8999998
Q ss_pred --------------------ccccCcCchhhhhccCCCC---e--EEEEeCCCCCcHHHHHhhc
Q psy5082 172 --------------------RNLGRYVYLEEGAQHIPPN---A--IVIEIAPHGLLQPIVKKSL 210 (358)
Q Consensus 172 --------------------~~~~~pV~f~~av~~l~~~---~--~~vEiGp~~~l~~~~~~~l 210 (358)
+|+..||+|.++++++... + .+.|+||+.++.+++++..
T Consensus 297 iSNvdg~~~~~~~hi~~~l~kQ~~rPV~we~~~~ti~sk~~~g~~~sye~GPG~~l~~ilk~~~ 360 (386)
T KOG2926|consen 297 ISNVDGKPYRDPGHILKQLAKQIVRPVQWEQTLKTIYSKQGVGFPRSYEVGPGRVLVAILKRNN 360 (386)
T ss_pred eecCCCcccCChHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCceEeeCCcHHHHHHHHHhC
Confidence 8889999999999999765 3 5999999999999999864
No 12
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=98.59 E-value=8.9e-08 Score=89.24 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=46.9
Q ss_pred EEEecCCcccccccCceeCCeEeeehhhHHHHHHHHHHhcCCCCCc-eEEeeEEeecccc
Q psy5082 295 VLGICSKEKYQHLLNYKIGEKFVVPVAAYIDLLLDFYLKKNPNAKH-VTIENFRTYEYDE 353 (358)
Q Consensus 295 ~~~~l~~~~~~~L~~H~v~g~~v~Paa~yle~a~~a~~~~~~~~~~-~~~~dv~~~~~~~ 353 (358)
|+..++.++.|||.||+|+|++|+||++|+||+++|+.. ..... +.|+|++|.+|..
T Consensus 18 ~~~~l~~~~~~~l~dH~v~g~~i~Pga~~le~~~~Aa~~--~~~~~~~~l~~~~~~~pl~ 75 (295)
T PF14765_consen 18 FESRLSPDEHPFLRDHRVQGQPILPGAAYLEMALEAARQ--LSPSSVVELRDLRFHRPLV 75 (295)
T ss_dssp EEEEECTTTTGGGGGEEETTEEEE-HHHHHHHHHHHHHH--HTCSSEEEEEEEEE-S-EE
T ss_pred EEEEECCccCchhhcCEECCEeeehhHHHHHHHHHHHHH--hhCcccceEEEeEecccEE
Confidence 777788899999999999999999999999999999988 22223 8999999999873
No 13
>smart00826 PKS_DH PKS_DH.
Probab=97.90 E-value=2.9e-05 Score=65.12 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=44.8
Q ss_pred EEEecCCcccccccCceeCCeEeeehhhHHHHHHHHHHhcCCCCCc-eEEeeEEeeccc
Q psy5082 295 VLGICSKEKYQHLLNYKIGEKFVVPVAAYIDLLLDFYLKKNPNAKH-VTIENFRTYEYD 352 (358)
Q Consensus 295 ~~~~l~~~~~~~L~~H~v~g~~v~Paa~yle~a~~a~~~~~~~~~~-~~~~dv~~~~~~ 352 (358)
++..+..+..+||.||+++|..++|+++|++|+++++.. ..... +.|+|+.|.+|.
T Consensus 18 ~~~~~~~~~~~~l~~h~v~~~~~~P~~~~~~~~~~a~~~--~~~~~~~~l~~~~~~~pl 74 (167)
T smart00826 18 FTGRLSLRTHPWLADHRVGGTVVLPGAAYVEMALAAADE--VGCGAAVRLEELTLEAPL 74 (167)
T ss_pred EEEEeCCCCCchhhcCEECCEEEecHHHHHHHHHHHHHH--hCCCCCceEeEEEecccc
Confidence 444566678889999999999999999999999998776 11122 678999998874
No 14
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=93.93 E-value=0.16 Score=43.30 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHhccCCHHhHHHHH
Q psy5082 92 ACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAA 138 (358)
Q Consensus 92 ~a~q~al~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ls~~da~~l~ 138 (358)
.+.+++..+.|.+.|++|+.+.|-|.|.+.|++.+--.+.++...+.
T Consensus 10 G~~~~Gvl~aL~e~gi~~d~v~GtSaGAi~aa~~a~g~~~~~~~~~~ 56 (172)
T cd07198 10 GIYHVGVAKALRERGPLIDIIAGTSAGAIVAALLASGRDLEEALLLL 56 (172)
T ss_pred HHHHHHHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCCHHHHHHHH
Confidence 46789999999999999999999999999999999888988877765
No 15
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=92.31 E-value=0.3 Score=45.86 Aligned_cols=47 Identities=28% Similarity=0.413 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHhccCCHHhHHHHH
Q psy5082 92 ACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAA 138 (358)
Q Consensus 92 ~a~q~al~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ls~~da~~l~ 138 (358)
-+.+++..+.|.+.|+.|++|.|-|+|.+.|++.|...+.++....+
T Consensus 23 G~~hiGVl~aL~e~gi~~~~iaGtS~GAiva~l~A~g~~~~~~~~~~ 69 (306)
T COG1752 23 GAAHIGVLKALEEAGIPIDVIAGTSAGAIVAALYAAGMDEDELELAA 69 (306)
T ss_pred HHHHHHHHHHHHHcCCCccEEEecCHHHHHHHHHHcCCChhHHHHHH
Confidence 56678899999999999999999999999998888777776644443
No 16
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=92.17 E-value=0.37 Score=41.79 Aligned_cols=48 Identities=23% Similarity=0.231 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHhccCCHHhHHHHHH
Q psy5082 92 ACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAF 139 (358)
Q Consensus 92 ~a~q~al~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ls~~da~~l~~ 139 (358)
-+.++++.+.|++.|+.||.++|-|.|.+.|+..+-..+.++...+..
T Consensus 11 G~~~~Gvl~~L~e~~~~~d~i~GtSaGai~aa~~a~g~~~~~~~~~~~ 58 (194)
T cd07207 11 GIAYIGALKALEEAGILKKRVAGTSAGAITAALLALGYSAADIKDILK 58 (194)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEECHHHHHHHHHHcCCCHHHHHHHHH
Confidence 345678889999999999999999999999988887788877666543
No 17
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=92.12 E-value=0.18 Score=59.81 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=44.9
Q ss_pred EEEecCCcccccccCceeCCeEeeehhhHHHHHHHHHHh-cCCCCCceEEeeEEeeccc
Q psy5082 295 VLGICSKEKYQHLLNYKIGEKFVVPVAAYIDLLLDFYLK-KNPNAKHVTIENFRTYEYD 352 (358)
Q Consensus 295 ~~~~l~~~~~~~L~~H~v~g~~v~Paa~yle~a~~a~~~-~~~~~~~~~~~dv~~~~~~ 352 (358)
+...++.+..|||.||+|+|.+|+|++.-++...+++.. .+.. +.|+|+++.+.+
T Consensus 2299 ~~~~l~~~~~pfl~dH~i~g~~vlP~~~~~~w~~~~~~~~~p~~---~~~~d~~vlkgi 2354 (2582)
T TIGR02813 2299 VMRTLDPKNMTFIADHCIGGDKVLPTVCAIAWMREAAMVALGAF---VGVADYKLLKGV 2354 (2582)
T ss_pred eEeeeccccCchHHhcccCCeeechHHHHHHHHHHHHHHhCCCc---eeeeeeeeecce
Confidence 455577789999999999999999999999999999887 3311 677888777754
No 18
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=91.95 E-value=0.36 Score=41.20 Aligned_cols=46 Identities=28% Similarity=0.330 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHhccCCHHhHHHHH
Q psy5082 93 CVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAA 138 (358)
Q Consensus 93 a~q~al~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ls~~da~~l~ 138 (358)
+.+.++.+.|++.|+.||.++|-|.|.+.|+..+-..+.++.....
T Consensus 13 ~~~~Gvl~~L~~~~~~~d~i~GtSaGal~a~~~a~g~~~~~~~~~~ 58 (175)
T cd07205 13 LAHIGVLKALEEAGIPIDIVSGTSAGAIVGALYAAGYSPEEIEERA 58 (175)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEECHHHHHHHHHHcCCCHHHHHHHH
Confidence 4578888999999999999999999999999988778888766654
No 19
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=91.35 E-value=0.42 Score=42.46 Aligned_cols=39 Identities=33% Similarity=0.518 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHhccCC
Q psy5082 92 ACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALT 130 (358)
Q Consensus 92 ~a~q~al~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ls 130 (358)
-+.++++.+.|.+.|+.+|.++|-|.|.+.|+..+...+
T Consensus 10 G~~~~Gvl~aL~e~g~~~d~i~GtS~GAl~aa~~a~~~~ 48 (215)
T cd07209 10 GAYQAGVLKALAEAGIEPDIISGTSIGAINGALIAGGDP 48 (215)
T ss_pred HHHHHHHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCc
Confidence 567899999999999999999999999999998887777
No 20
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=91.00 E-value=0.55 Score=41.94 Aligned_cols=47 Identities=21% Similarity=0.425 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHhccCCHHhHHHHH
Q psy5082 92 ACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAA 138 (358)
Q Consensus 92 ~a~q~al~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ls~~da~~l~ 138 (358)
.+.+++..+.|++.|++|+.++|-|.|.+.|+..+-..+.++.....
T Consensus 12 G~~~~GvL~aL~e~gi~~~~i~GtSaGAi~aa~~a~g~~~~~~~~~~ 58 (221)
T cd07210 12 FYAHLGFLAALLEMGLEPSAISGTSAGALVGGLFASGISPDEMAELL 58 (221)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEeCHHHHHHHHHHcCCCHHHHHHHH
Confidence 57788999999999999999999999999999888778888766543
No 21
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=90.84 E-value=0.56 Score=43.24 Aligned_cols=45 Identities=22% Similarity=0.278 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHhccCCHHhHHH
Q psy5082 92 ACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIY 136 (358)
Q Consensus 92 ~a~q~al~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ls~~da~~ 136 (358)
-+.++++.+.|++.||.+|.|.|-|+|.+.++..+-..+.++...
T Consensus 22 G~ahiGVL~aLeE~gi~~d~v~GtSaGAiiga~ya~g~~~~~~~~ 66 (269)
T cd07227 22 GISHIGILQALEEAGIPIDAIGGTSIGSFVGGLYAREADLVPIFG 66 (269)
T ss_pred HHHHHHHHHHHHHcCCCccEEEEECHHHHHHHHHHcCCchHHHHH
Confidence 345688889999999999999999999988877666667666543
No 22
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=89.98 E-value=0.75 Score=43.28 Aligned_cols=47 Identities=28% Similarity=0.360 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHhccCCHHhHHHHH
Q psy5082 92 ACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAA 138 (358)
Q Consensus 92 ~a~q~al~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ls~~da~~l~ 138 (358)
-+..+++.+.|.+.||.||.|+|-|+|.+.++..+...+.++.....
T Consensus 27 G~ahiGvL~aLee~gi~~d~v~GtSaGAi~ga~ya~g~~~~~~~~~~ 73 (306)
T cd07225 27 GCAHIGVIKALEEAGIPVDMVGGTSIGAFIGALYAEERNISRMKQRA 73 (306)
T ss_pred HHHHHHHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCCHHHHHHHH
Confidence 45677888999999999999999999998887776667766555443
No 23
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=89.85 E-value=0.76 Score=44.57 Aligned_cols=49 Identities=22% Similarity=0.275 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHhccCCHHhHHHHHH
Q psy5082 90 GIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAF 139 (358)
Q Consensus 90 ~~~a~q~al~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ls~~da~~l~~ 139 (358)
+.-...++..+.|.+.|+.|+.+.|-|.|.+.||.+|. -+.+|...+..
T Consensus 93 ~~G~~h~Gv~kaL~e~gl~p~~i~GtS~Gaivaa~~a~-~~~~e~~~~l~ 141 (391)
T cd07229 93 IFGLCHLGVVKALWLRGLLPRIITGTATGALIAALVGV-HTDEELLRFLD 141 (391)
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEEecHHHHHHHHHHc-CCHHHHHHHHh
Confidence 44567789999999999999999999999999999988 57777777654
No 24
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=89.54 E-value=0.76 Score=39.29 Aligned_cols=43 Identities=28% Similarity=0.302 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHhccCCHHhH
Q psy5082 92 ACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQV 134 (358)
Q Consensus 92 ~a~q~al~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ls~~da 134 (358)
-+.+.++.+.|++.|+.||.+.|-|.|.+.|+..+...+.++.
T Consensus 12 G~~~~Gvl~~L~e~g~~~d~i~GtSaGAi~aa~~a~g~~~~~~ 54 (175)
T cd07228 12 GWAHIGVLRALEEEGIEIDIIAGSSIGALVGALYAAGHLDALE 54 (175)
T ss_pred HHHHHHHHHHHHHCCCCeeEEEEeCHHHHHHHHHHcCCCHHHH
Confidence 4557888899999999999999999999988887766666554
No 25
>PRK10279 hypothetical protein; Provisional
Probab=88.59 E-value=0.56 Score=43.97 Aligned_cols=37 Identities=35% Similarity=0.508 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcccccCHHHHHHH-HHhcc
Q psy5082 92 ACVQIGLVDLLYEMGIKPDGLIGHSVGELGCA-YADGA 128 (358)
Q Consensus 92 ~a~q~al~~ll~~~Gi~P~~viGhS~GE~aAa-~~aG~ 128 (358)
-+.+++..+.|.+.|+.||.++|-|+|.+.++ |++|.
T Consensus 17 G~ahiGVL~aL~E~gi~~d~i~GtS~GAlvga~yA~g~ 54 (300)
T PRK10279 17 GWSHIGVINALKKVGIEIDIVAGCSIGSLVGAAYACDR 54 (300)
T ss_pred HHHHHHHHHHHHHcCCCcCEEEEEcHHHHHHHHHHcCC
Confidence 45588999999999999999999999998875 55564
No 26
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=87.53 E-value=2.6 Score=38.81 Aligned_cols=29 Identities=31% Similarity=0.269 Sum_probs=23.9
Q ss_pred HHHHHHHcCCCCCcccccCHHHHHHHHHh
Q psy5082 98 LVDLLYEMGIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 98 l~~ll~~~Gi~P~~viGhS~GE~aAa~~a 126 (358)
..+.+++.|++|-.++|||+|-..|..++
T Consensus 89 ai~~L~~~~~~~v~LvG~SmGG~vAl~~A 117 (266)
T TIGR03101 89 AYRWLIEQGHPPVTLWGLRLGALLALDAA 117 (266)
T ss_pred HHHHHHhcCCCCEEEEEECHHHHHHHHHH
Confidence 34567778899999999999999888665
No 27
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=87.18 E-value=1.9 Score=38.82 Aligned_cols=51 Identities=27% Similarity=0.387 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHcCCCC--CcccccCHHHHHHHHHhccCCHHhHHHHHHH
Q psy5082 90 GIACVQIGLVDLLYEMGIKP--DGLIGHSVGELGCAYADGALTAEQVIYAAFA 140 (358)
Q Consensus 90 ~~~a~q~al~~ll~~~Gi~P--~~viGhS~GE~aAa~~aG~ls~~da~~l~~~ 140 (358)
.+++..++..+.|.+.|+.| +.++|-|.|.++|++.+-..+.++...+...
T Consensus 9 ~lg~yh~GVl~~L~e~gi~~~~~~i~G~SAGAl~aa~~asg~~~~~~~~~~~~ 61 (233)
T cd07224 9 LLFPYHLGVLSLLIEAGVINETTPLAGASAGSLAAACSASGLSPEEALEATEE 61 (233)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCEEEEEcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35777889999999999985 5899999999999888877888877665543
No 28
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=86.38 E-value=2.1 Score=38.91 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHcC--CCCCcccccCHHHHHHHHHhccCCHHhHHHHH
Q psy5082 91 IACVQIGLVDLLYEMG--IKPDGLIGHSVGELGCAYADGALTAEQVIYAA 138 (358)
Q Consensus 91 ~~a~q~al~~ll~~~G--i~P~~viGhS~GE~aAa~~aG~ls~~da~~l~ 138 (358)
..+.+++..+.|++.| +.++.+.|-|.|.++|++.+-..+.++..+..
T Consensus 11 rG~yh~GVl~aL~e~g~~~~~d~i~GtSAGAl~aa~~a~g~~~~~~~~~~ 60 (245)
T cd07218 11 LGIYHVGVAVCLKKYAPHLLLNKISGASAGALAACCLLCDLPLGEMTSDF 60 (245)
T ss_pred HHHHHHHHHHHHHHhCcccCCCeEEEEcHHHHHHHHHHhCCcHHHHHHHH
Confidence 4567899999999999 55999999999999999888777877766443
No 29
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=85.84 E-value=1.4 Score=39.70 Aligned_cols=29 Identities=38% Similarity=0.541 Sum_probs=24.0
Q ss_pred HHHHHHHcCCCCCcccccCHHHHHHHHHh
Q psy5082 98 LVDLLYEMGIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 98 l~~ll~~~Gi~P~~viGhS~GE~aAa~~a 126 (358)
+.++++..++++..++|||+|-..|+.++
T Consensus 85 l~~~i~~~~~~~~~lvG~S~Gg~~a~~~a 113 (278)
T TIGR03056 85 LSALCAAEGLSPDGVIGHSAGAAIALRLA 113 (278)
T ss_pred HHHHHHHcCCCCceEEEECccHHHHHHHH
Confidence 44566788999999999999998887765
No 30
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=85.47 E-value=2 Score=40.04 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHhc
Q psy5082 91 IACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADG 127 (358)
Q Consensus 91 ~~a~q~al~~ll~~~Gi~P~~viGhS~GE~aAa~~aG 127 (358)
.-+.+++..+.|.+.|+.|+.+.|-|.|.+.|+..+-
T Consensus 80 ~g~~h~Gvl~aL~e~~l~~~~i~GtSaGAi~aa~~~~ 116 (298)
T cd07206 80 LGLFHLGVVKALWEQDLLPRVISGSSAGAIVAALLGT 116 (298)
T ss_pred HHHHHHHHHHHHHHcCCCCCEEEEEcHHHHHHHHHHc
Confidence 3557889999999999999999999999998887763
No 31
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=85.22 E-value=2.4 Score=39.94 Aligned_cols=47 Identities=28% Similarity=0.400 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHhccCCHHhHHHHH
Q psy5082 91 IACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAA 138 (358)
Q Consensus 91 ~~a~q~al~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ls~~da~~l~ 138 (358)
.-+..++..+.|.+.|+.|+.+.|-|.|.+.|+..+. -+.+|...+.
T Consensus 79 ~g~~h~GVlkaL~e~gl~p~~i~GsSaGAivaa~~~~-~t~~El~~~~ 125 (323)
T cd07231 79 LGTFHVGVVRTLVEHQLLPRVIAGSSVGSIVCAIIAT-RTDEELQSFF 125 (323)
T ss_pred HHHHHHHHHHHHHHcCCCCCEEEEECHHHHHHHHHHc-CCHHHHHHHH
Confidence 4567889999999999999999999999999988876 5666666654
No 32
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=85.21 E-value=0.98 Score=36.13 Aligned_cols=53 Identities=6% Similarity=-0.146 Sum_probs=40.4
Q ss_pred cccccccCceeCCeEeeehhhHHHHHHHHHHh-cCCC------CCc----eEEeeEEeecccccc
Q psy5082 302 EKYQHLLNYKIGEKFVVPVAAYIDLLLDFYLK-KNPN------AKH----VTIENFRTYEYDENV 355 (358)
Q Consensus 302 ~~~~~L~~H~v~g~~v~Paa~yle~a~~a~~~-~~~~------~~~----~~~~dv~~~~~~~~~ 355 (358)
.+.+|+.+|- .|.+++|++..+|++.+++.. .+.. ... ..+++++|++|+.+-
T Consensus 29 ~~~~~~~~hf-p~~p~lPg~~~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~~v~pg 92 (131)
T cd00493 29 PNEPFFQGHF-PGDPVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGVRKVKFRGPVLPG 92 (131)
T ss_pred CCChhhcccC-CCCCCCCcHHHHHHHHHHHHHHHHhcccccccCCcEEEEEEcceeEECCCcCCC
Confidence 5677999998 778999999999999988875 2211 112 567999999988653
No 33
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=84.80 E-value=2.8 Score=38.03 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHcCCC--C--CcccccCHHHHHHHHHhccCCHHhHHHHHH
Q psy5082 91 IACVQIGLVDLLYEMGIK--P--DGLIGHSVGELGCAYADGALTAEQVIYAAF 139 (358)
Q Consensus 91 ~~a~q~al~~ll~~~Gi~--P--~~viGhS~GE~aAa~~aG~ls~~da~~l~~ 139 (358)
..+.+++..+.|.+.|+. + +.++|-|.|.++|++.+-..+.++......
T Consensus 10 ~G~yh~GVl~~L~e~g~~l~~~~~~i~GtSAGAl~aa~~a~g~~~~~~~~~~~ 62 (243)
T cd07204 10 LGIYHVGVASALREHAPRLLQNARRIAGASAGAIVAAVVLCGVSMEEACSFIL 62 (243)
T ss_pred HHHHHHHHHHHHHHcCcccccCCCEEEEEcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345688999999999987 3 599999999999998887788887655443
No 34
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=82.90 E-value=4.3 Score=36.99 Aligned_cols=48 Identities=15% Similarity=0.163 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHcCCC----CCcccccCHHHHHHHHHhccCCHHhHHHHH
Q psy5082 91 IACVQIGLVDLLYEMGIK----PDGLIGHSVGELGCAYADGALTAEQVIYAA 138 (358)
Q Consensus 91 ~~a~q~al~~ll~~~Gi~----P~~viGhS~GE~aAa~~aG~ls~~da~~l~ 138 (358)
..+..++..+.|.+.|+. ++.++|-|.|.++|++.+-..+.++.....
T Consensus 15 rG~yh~GVl~~L~e~g~~l~~~~~~i~G~SAGAl~aa~~a~g~~~~~~~~~~ 66 (249)
T cd07220 15 LGVYHVGVASCLLEHAPFLVANARKIYGASAGALTATALVTGVCLGECGASV 66 (249)
T ss_pred HHHHHHHHHHHHHhcCCcccccCCeEEEEcHHHHHHHHHHcCCCHHHHHHHH
Confidence 456688999999999987 899999999999999877666776654443
No 35
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=82.57 E-value=3.9 Score=37.31 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHcCCC----CCcccccCHHHHHHHHHhccCCHHhHHHHHH
Q psy5082 92 ACVQIGLVDLLYEMGIK----PDGLIGHSVGELGCAYADGALTAEQVIYAAF 139 (358)
Q Consensus 92 ~a~q~al~~ll~~~Gi~----P~~viGhS~GE~aAa~~aG~ls~~da~~l~~ 139 (358)
.+.+++..+.|++.|+. ++.++|-|.|.++|++.+-..+.++..+...
T Consensus 12 G~yh~GVl~aL~e~~~~l~~~~~~i~GtSAGAl~aa~~asg~~~~~~~~~~~ 63 (252)
T cd07221 12 GFYHVGVTRCLSERAPHLLRDARMFFGASAGALHCVTFLSGLPLDQILQILM 63 (252)
T ss_pred HHHHHHHHHHHHHhCcchhccCCEEEEEcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45688999999999986 9999999999999988776677777766554
No 36
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=82.15 E-value=1.3 Score=39.34 Aligned_cols=33 Identities=27% Similarity=0.171 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCCCCcccccCHHHHHHHHHhccC
Q psy5082 97 GLVDLLYEMGIKPDGLIGHSVGELGCAYADGAL 129 (358)
Q Consensus 97 al~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~l 129 (358)
-+.++++.+|+++-.++|||+|-..|..++...
T Consensus 55 ~l~~~l~~~~~~~~~lvG~S~Gg~va~~~a~~~ 87 (242)
T PRK11126 55 LLSQTLQSYNILPYWLVGYSLGGRIAMYYACQG 87 (242)
T ss_pred HHHHHHHHcCCCCeEEEEECHHHHHHHHHHHhC
Confidence 355778889999999999999999998887654
No 37
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=81.78 E-value=3 Score=41.08 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHhccCCHHhHHHHH
Q psy5082 92 ACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAA 138 (358)
Q Consensus 92 ~a~q~al~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ls~~da~~l~ 138 (358)
-+..++..+.|.+.|+.|+.+.|-|.|.+.|+..+. -+.++...+.
T Consensus 85 G~~hiGVLkaL~E~gl~p~vIsGTSaGAivAal~as-~~~eel~~~l 130 (421)
T cd07230 85 GMFHIGVLKALFEANLLPRIISGSSAGSIVAAILCT-HTDEEIPELL 130 (421)
T ss_pred HHHHHHHHHHHHHcCCCCCEEEEECHHHHHHHHHHc-CCHHHHHHHH
Confidence 446788899999999999999999999999987765 5666655543
No 38
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=81.17 E-value=1.9 Score=34.52 Aligned_cols=52 Identities=10% Similarity=-0.104 Sum_probs=39.1
Q ss_pred cccccccCceeCCeEeeehhhHHHHHHHHHHh-cCCC----CCc----eEEeeEEeeccccc
Q psy5082 302 EKYQHLLNYKIGEKFVVPVAAYIDLLLDFYLK-KNPN----AKH----VTIENFRTYEYDEN 354 (358)
Q Consensus 302 ~~~~~L~~H~v~g~~v~Paa~yle~a~~a~~~-~~~~----~~~----~~~~dv~~~~~~~~ 354 (358)
.+.+|+.||- .|.+++||...+|++..++.. .... ... ..+++++|.+|+.+
T Consensus 30 ~d~~~~~~hf-~~~pi~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~pv~p 90 (131)
T cd01288 30 INEPFFQGHF-PGNPIMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVP 90 (131)
T ss_pred CCChhhcCCC-CCCCcCCchHHHHHHHHHHHHHhhhcccccCCcEEEEeeecccEEccccCC
Confidence 5667999994 889999999999998887765 2111 122 45699999998765
No 39
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=80.63 E-value=2.2 Score=39.10 Aligned_cols=37 Identities=35% Similarity=0.489 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCCC-CCcccccCHHHHHHHHH-hccC
Q psy5082 93 CVQIGLVDLLYEMGIK-PDGLIGHSVGELGCAYA-DGAL 129 (358)
Q Consensus 93 a~q~al~~ll~~~Gi~-P~~viGhS~GE~aAa~~-aG~l 129 (358)
+.+.++.+.|.+.|+. +|.++|-|.|.+.|++. +|.-
T Consensus 11 ~~~~Gvl~al~e~~~~~fd~i~GtSaGAi~a~~~~~g~~ 49 (266)
T cd07208 11 AYTAGVLDAFLEAGIRPFDLVIGVSAGALNAASYLSGQR 49 (266)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEECHHHHhHHHHHhCCc
Confidence 4678888999999999 99999999999888765 4543
No 40
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=80.24 E-value=3.6 Score=40.32 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHhccCCHHhHHHHH
Q psy5082 93 CVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAA 138 (358)
Q Consensus 93 a~q~al~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ls~~da~~l~ 138 (358)
+..++..+.|.+.|+.|+.++|-|.|.+.|+.++- -+.++..++.
T Consensus 80 ~~h~GVlkaL~e~gllp~iI~GtSAGAivaalla~-~t~~el~~~~ 124 (407)
T cd07232 80 YYHFGVVKALLDADLLPNVISGTSGGSLVAALLCT-RTDEELKQLL 124 (407)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEECHHHHHHHHHHc-CCHHHHHHHH
Confidence 45778899999999999999999999999988875 5666665554
No 41
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=79.78 E-value=4.9 Score=34.90 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=24.6
Q ss_pred HHHHHHHcCCCCCcccccCHHHHHHHHHhcc
Q psy5082 98 LVDLLYEMGIKPDGLIGHSVGELGCAYADGA 128 (358)
Q Consensus 98 l~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ 128 (358)
+.+.++.++.++-.++|||+|-+.|..++..
T Consensus 69 ~~~~i~~~~~~~v~liG~S~Gg~~a~~~a~~ 99 (251)
T TIGR02427 69 VLALLDHLGIERAVFCGLSLGGLIAQGLAAR 99 (251)
T ss_pred HHHHHHHhCCCceEEEEeCchHHHHHHHHHH
Confidence 3456677888888999999999988877654
No 42
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1. Members of this family share a patatin domain, initially discovered in potato tubers. Some members of PNPLA1 subfamily do not have the lipase consensus sequence Gly-X-Ser-X-Gly which is essential for hydrolase activity. This family includes PNPLA1 from Homo sapiens and Gallus gallus. Currently, there is no literature available on the physiological role, structure, or enzymatic activity of PNPLA1. It is expressed in various human tissues in low mRNA levels.
Probab=78.88 E-value=5.6 Score=38.42 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHcCC----CCCcccccCHHHHHHHHHhccCCHHhHHHHHH
Q psy5082 91 IACVQIGLVDLLYEMGI----KPDGLIGHSVGELGCAYADGALTAEQVIYAAF 139 (358)
Q Consensus 91 ~~a~q~al~~ll~~~Gi----~P~~viGhS~GE~aAa~~aG~ls~~da~~l~~ 139 (358)
..+.+++..+.|++.|+ .++.++|-|.|.++|++.+-..+.++..++..
T Consensus 23 rGiYHvGVl~aL~E~gp~ll~~~d~IaGtSAGALvAAl~asG~s~de~~r~~~ 75 (382)
T cd07219 23 LSFYQAGVVDALRDLAPRMLETAHRVAGTSAGSVIAALVVCGISMDEYLRVLN 75 (382)
T ss_pred HHHHHHHHHHHHHhcCCcccccCCeEEEEcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45678999999999885 48999999999999988877778888777654
No 43
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=78.31 E-value=1.9 Score=35.16 Aligned_cols=54 Identities=9% Similarity=-0.153 Sum_probs=35.2
Q ss_pred cccccccCceeCCeEeeehhhHHHHHHHHHHh----cCC--CCC---c----eEEeeEEeeccccccc
Q psy5082 302 EKYQHLLNYKIGEKFVVPVAAYIDLLLDFYLK----KNP--NAK---H----VTIENFRTYEYDENVF 356 (358)
Q Consensus 302 ~~~~~L~~H~v~g~~v~Paa~yle~a~~a~~~----~~~--~~~---~----~~~~dv~~~~~~~~~~ 356 (358)
.+.+|+.||= .|.+++||+..+|++.+++.. .+. ... . ..+++++|.+++.+.+
T Consensus 35 ~~~~~f~gHF-p~~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~Pg~ 101 (138)
T PF07977_consen 35 PDEPFFDGHF-PGDPVMPGVLLIEAMAQAAGFLAGYSGLAEGTGEARKVPFLAGIRNVKFRGPVYPGD 101 (138)
T ss_dssp TTSGGGGCST-TTS--B-HHHHHHHHHHHHHHHHHHHCCSSSCCCCCEEEEEEEEEEEEE-S-B-TTE
T ss_pred CCCCEEEcCC-CCCCCCCeEhHHHHHHHHHHhHhhhccccccCCCcceEEEeccccEEEECccEeCCC
Confidence 5567999997 889999999999999888764 211 111 2 4689999999887654
No 44
>cd07223 Pat_PNPLA5-mammals Patatin-like phospholipase domain containing protein 5. PNPLA5, also known as GS2L (GS2-like), plays a role in regulation of adipocyte differentiation. PNPLA5 is expressed in brain tissue in high mRNA levels and low levels in liver tissue. There is no concrete evidence in support of the enzymatic activity of GS2L. This family includes patatin-like proteins: GS2L (GS2-like) and PNPLA5 (Patatin-like phospholipase domain-containing protein 5) reported exclusively in mammals.
Probab=76.58 E-value=8 Score=37.43 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHcCCC----CCcccccCHHHHHHHHHhccCCHHhHHHHHHH
Q psy5082 90 GIACVQIGLVDLLYEMGIK----PDGLIGHSVGELGCAYADGALTAEQVIYAAFA 140 (358)
Q Consensus 90 ~~~a~q~al~~ll~~~Gi~----P~~viGhS~GE~aAa~~aG~ls~~da~~l~~~ 140 (358)
.+....++.++.|.+.|.. ++.+.|-|.|.++|++.+...+.+++...+..
T Consensus 19 flG~yHvGV~~~L~e~~p~ll~~~~~iaGaSAGAL~aa~~a~g~~~~~~~~~i~~ 73 (405)
T cd07223 19 YLGLYHVGVTECLRQRAPRLLQGARRIYGSSSGALNAVSIVCGKSADFCCSNLLG 73 (405)
T ss_pred HHHHHHHHHHHHHHHhCchhhccCCeeeeeCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4577789999999998732 56699999999999999999999966555543
No 45
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=76.13 E-value=9.9 Score=37.14 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=23.1
Q ss_pred HHHHHcCCCCCcccccCHHHHHHHHHhc
Q psy5082 100 DLLYEMGIKPDGLIGHSVGELGCAYADG 127 (358)
Q Consensus 100 ~ll~~~Gi~P~~viGhS~GE~aAa~~aG 127 (358)
+.++..|+++-.++|||+|-+.|+.++.
T Consensus 168 ~~~~~l~~~~~~lvGhS~GG~la~~~a~ 195 (402)
T PLN02894 168 EWRKAKNLSNFILLGHSFGGYVAAKYAL 195 (402)
T ss_pred HHHHHcCCCCeEEEEECHHHHHHHHHHH
Confidence 4556689999999999999999887663
No 46
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=76.10 E-value=2.5 Score=38.51 Aligned_cols=29 Identities=17% Similarity=0.017 Sum_probs=24.8
Q ss_pred HHHHHHcCCCCCcccccCHHHHHHHHHhc
Q psy5082 99 VDLLYEMGIKPDGLIGHSVGELGCAYADG 127 (358)
Q Consensus 99 ~~ll~~~Gi~P~~viGhS~GE~aAa~~aG 127 (358)
.+++..+++++-.++|||+|-+.|+.++-
T Consensus 82 ~~~i~~l~~~~~~LvG~S~GG~va~~~a~ 110 (276)
T TIGR02240 82 ARMLDYLDYGQVNAIGVSWGGALAQQFAH 110 (276)
T ss_pred HHHHHHhCcCceEEEEECHHHHHHHHHHH
Confidence 35677789999999999999999988774
No 47
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=75.79 E-value=4.2 Score=36.91 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHcCCC----CCcccccCHHHHHHHHHhc
Q psy5082 91 IACVQIGLVDLLYEMGIK----PDGLIGHSVGELGCAYADG 127 (358)
Q Consensus 91 ~~a~q~al~~ll~~~Gi~----P~~viGhS~GE~aAa~~aG 127 (358)
..+.+++..+.|++.|+. ++.+.|-|.|.++|++.+.
T Consensus 10 rG~yhiGVl~~L~e~g~~l~~~~~~i~GtSaGAl~aa~~a~ 50 (246)
T cd07222 10 LGIYHLGAAKALLRHGKKLLKRVKRFAGASAGSLVAAVLLT 50 (246)
T ss_pred HHHHHHHHHHHHHHcCchhhccCCEEEEECHHHHHHHHHhc
Confidence 345688999999999995 8999999999999998874
No 48
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=75.37 E-value=9.9 Score=33.05 Aligned_cols=85 Identities=24% Similarity=0.278 Sum_probs=51.1
Q ss_pred CEEEEeCCCCcchHHHHHHHhccHHHHHHHHHHHHHHhhC-----CCCcHHHhcCCCCcchhhhhHhHHHHHHHHHHHHH
Q psy5082 25 PVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKEN-----NVDIMNILTNEEDKTIFDNILNSFVGIACVQIGLV 99 (358)
Q Consensus 25 ~v~fvF~Gqg~~~~~m~~~L~~~p~f~~~~~~~~~~l~~~-----g~~l~~~l~~~~~~~~~~~~~~~q~~~~a~q~al~ 99 (358)
.++++|+|+|. |.++.+.+ .+.|+.. |++-+.++....+.... ---+.-.+-
T Consensus 3 t~~v~~SGDgG-w~~~d~~~-------------a~~l~~~G~~VvGvdsl~Yfw~~rtP~~~---------a~Dl~~~i~ 59 (192)
T PF06057_consen 3 TLAVFFSGDGG-WRDLDKQI-------------AEALAKQGVPVVGVDSLRYFWSERTPEQT---------AADLARIIR 59 (192)
T ss_pred EEEEEEeCCCC-chhhhHHH-------------HHHHHHCCCeEEEechHHHHhhhCCHHHH---------HHHHHHHHH
Confidence 57899999986 55554443 2344443 56655555444221111 111223344
Q ss_pred HHHHHcCCCCCcccccCHHHHHHHHHhccCCHH
Q psy5082 100 DLLYEMGIKPDGLIGHSVGELGCAYADGALTAE 132 (358)
Q Consensus 100 ~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ls~~ 132 (358)
...+.||.+--.++|+|+|.=...++-..|+..
T Consensus 60 ~y~~~w~~~~vvLiGYSFGADvlP~~~nrLp~~ 92 (192)
T PF06057_consen 60 HYRARWGRKRVVLIGYSFGADVLPFIYNRLPAA 92 (192)
T ss_pred HHHHHhCCceEEEEeecCCchhHHHHHhhCCHH
Confidence 556789999999999999976666666666554
No 49
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=75.29 E-value=2.7 Score=38.67 Aligned_cols=31 Identities=26% Similarity=0.138 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHh
Q psy5082 96 IGLVDLLYEMGIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 96 ~al~~ll~~~Gi~P~~viGhS~GE~aAa~~a 126 (358)
-.+..++.++++++..++|||+|-..|+..+
T Consensus 90 ~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a 120 (294)
T PLN02824 90 EQLNDFCSDVVGDPAFVICNSVGGVVGLQAA 120 (294)
T ss_pred HHHHHHHHHhcCCCeEEEEeCHHHHHHHHHH
Confidence 3556777888999999999999999887766
No 50
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=75.01 E-value=7.9 Score=36.48 Aligned_cols=46 Identities=13% Similarity=0.042 Sum_probs=36.1
Q ss_pred HHHHHHHHHH-cCCC----CCcccccCHHHHHHHHHhccCCHHhHHHHHHH
Q psy5082 95 QIGLVDLLYE-MGIK----PDGLIGHSVGELGCAYADGALTAEQVIYAAFA 140 (358)
Q Consensus 95 q~al~~ll~~-~Gi~----P~~viGhS~GE~aAa~~aG~ls~~da~~l~~~ 140 (358)
.+.+-+.+++ .|+. +|.+.|-|.|-+.|+..+-.++.+|...+...
T Consensus 14 ~i~vL~~le~~~g~~i~~~fD~i~GTStGgiIA~~la~g~s~~e~~~~y~~ 64 (312)
T cd07212 14 LIQMLIAIEKALGRPIRELFDWIAGTSTGGILALALLHGKSLREARRLYLR 64 (312)
T ss_pred HHHHHHHHHHHhCCCchhhccEEEeeChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3444455665 5876 89999999999999988888999998887443
No 51
>PRK00870 haloalkane dehalogenase; Provisional
Probab=73.72 E-value=3.1 Score=38.54 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=24.4
Q ss_pred HHHHHHHcCCCCCcccccCHHHHHHHHHh
Q psy5082 98 LVDLLYEMGIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 98 l~~ll~~~Gi~P~~viGhS~GE~aAa~~a 126 (358)
+.+++.++|+++-.++|||+|-+.|...+
T Consensus 105 l~~~l~~l~~~~v~lvGhS~Gg~ia~~~a 133 (302)
T PRK00870 105 MRSWFEQLDLTDVTLVCQDWGGLIGLRLA 133 (302)
T ss_pred HHHHHHHcCCCCEEEEEEChHHHHHHHHH
Confidence 45677889999999999999998887655
No 52
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=72.98 E-value=4.6 Score=32.91 Aligned_cols=52 Identities=10% Similarity=-0.124 Sum_probs=37.1
Q ss_pred cccccccCceeCCeEeeehhhHHHHHHHHHHh-cCC-----C-CCc----eEEeeEEeeccccc
Q psy5082 302 EKYQHLLNYKIGEKFVVPVAAYIDLLLDFYLK-KNP-----N-AKH----VTIENFRTYEYDEN 354 (358)
Q Consensus 302 ~~~~~L~~H~v~g~~v~Paa~yle~a~~a~~~-~~~-----~-~~~----~~~~dv~~~~~~~~ 354 (358)
.+.+|+.||= .|.+++||...+|++.+++.. .+. . ... ..+++++|.+|+.+
T Consensus 38 ~~~~~f~gHF-p~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~p 100 (140)
T TIGR01750 38 INEPFFQGHF-PEKPIMPGVLIVEALAQAGGVLAILSLGGEIGKGKLVYFAGIDKAKFRRPVVP 100 (140)
T ss_pred CCCCeecCCC-cCcCcChHHHHHHHHHHHHHHHheccccccCCCCcEEEEeecceeEECCccCC
Confidence 4557899986 567899999999999988753 211 1 112 45699999998754
No 53
>PRK03592 haloalkane dehalogenase; Provisional
Probab=72.61 E-value=3.5 Score=37.96 Aligned_cols=30 Identities=20% Similarity=0.151 Sum_probs=25.2
Q ss_pred HHHHHHHcCCCCCcccccCHHHHHHHHHhc
Q psy5082 98 LVDLLYEMGIKPDGLIGHSVGELGCAYADG 127 (358)
Q Consensus 98 l~~ll~~~Gi~P~~viGhS~GE~aAa~~aG 127 (358)
+..+++++|+++..++|||+|-+.|...+.
T Consensus 83 l~~ll~~l~~~~~~lvGhS~Gg~ia~~~a~ 112 (295)
T PRK03592 83 LDAWFDALGLDDVVLVGHDWGSALGFDWAA 112 (295)
T ss_pred HHHHHHHhCCCCeEEEEECHHHHHHHHHHH
Confidence 456778899999999999999998876653
No 54
>PRK11071 esterase YqiA; Provisional
Probab=71.82 E-value=4 Score=35.32 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=25.8
Q ss_pred HHHHHHcCCCCCcccccCHHHHHHHHHhccC
Q psy5082 99 VDLLYEMGIKPDGLIGHSVGELGCAYADGAL 129 (358)
Q Consensus 99 ~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~l 129 (358)
.+++...|+++-.++|||+|-+.|+.++...
T Consensus 52 ~~l~~~~~~~~~~lvG~S~Gg~~a~~~a~~~ 82 (190)
T PRK11071 52 ESLVLEHGGDPLGLVGSSLGGYYATWLSQCF 82 (190)
T ss_pred HHHHHHcCCCCeEEEEECHHHHHHHHHHHHc
Confidence 4566778999999999999999998877543
No 55
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=71.17 E-value=4.5 Score=34.35 Aligned_cols=30 Identities=37% Similarity=0.493 Sum_probs=25.4
Q ss_pred HHHHHHHHcCCCCCcccccCHHHHHHHHHh
Q psy5082 97 GLVDLLYEMGIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 97 al~~ll~~~Gi~P~~viGhS~GE~aAa~~a 126 (358)
.+.++++..+.++-.++|||+|-..+..++
T Consensus 55 ~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~a 84 (228)
T PF12697_consen 55 DLAELLDALGIKKVILVGHSMGGMIALRLA 84 (228)
T ss_dssp HHHHHHHHTTTSSEEEEEETHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccccc
Confidence 445678889999999999999998887766
No 56
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=70.88 E-value=4.1 Score=38.66 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=24.3
Q ss_pred HHHHHHHcCCCCC-cccccCHHHHHHHHHhc
Q psy5082 98 LVDLLYEMGIKPD-GLIGHSVGELGCAYADG 127 (358)
Q Consensus 98 l~~ll~~~Gi~P~-~viGhS~GE~aAa~~aG 127 (358)
+..++.++|++.. .++|||+|-+.|...+.
T Consensus 127 l~~ll~~l~l~~~~~lvG~SmGG~vA~~~A~ 157 (343)
T PRK08775 127 IALLLDALGIARLHAFVGYSYGALVGLQFAS 157 (343)
T ss_pred HHHHHHHcCCCcceEEEEECHHHHHHHHHHH
Confidence 3577888999765 69999999998887664
No 57
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=70.01 E-value=7.2 Score=32.07 Aligned_cols=52 Identities=10% Similarity=-0.137 Sum_probs=36.6
Q ss_pred cccccccCceeCCeEeeehhhHHHHHHHHHHh-cCCC---CCc----eEEeeEEeeccccc
Q psy5082 302 EKYQHLLNYKIGEKFVVPVAAYIDLLLDFYLK-KNPN---AKH----VTIENFRTYEYDEN 354 (358)
Q Consensus 302 ~~~~~L~~H~v~g~~v~Paa~yle~a~~a~~~-~~~~---~~~----~~~~dv~~~~~~~~ 354 (358)
.+.+|+.||-- |.+++||...+|++..++.. .... ... ..+++++|++|+..
T Consensus 45 ~d~~~~~ghfp-~~pi~PG~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~kF~~pv~p 104 (147)
T PRK00006 45 INEPFFQGHFP-GYPVMPGVLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKARFKRPVVP 104 (147)
T ss_pred CCCccccCCCc-CCCcCchhHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEEEEccccCC
Confidence 55668999865 45899999999987776654 2111 112 45799999998754
No 58
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=67.47 E-value=14 Score=35.15 Aligned_cols=103 Identities=20% Similarity=0.210 Sum_probs=57.1
Q ss_pred CCCCEEEEeCCCCcchHHHHHHHhccHHHHHHHHHHHHHHh-hC-CCC-cHHHhcCCCCcchhhhhHhHHHHHHHHHHHH
Q psy5082 22 NNRPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLK-EN-NVD-IMNILTNEEDKTIFDNILNSFVGIACVQIGL 98 (358)
Q Consensus 22 ~~~~v~fvF~Gqg~~~~~m~~~L~~~p~f~~~~~~~~~~l~-~~-g~~-l~~~l~~~~~~~~~~~~~~~q~~~~a~q~al 98 (358)
+.++++..++|-|-++...-+.|+..|..++-+..+ +|. ++ |.- ..+.... .-....|....-.+++.=.-+|
T Consensus 90 ~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~--~le~Pyyg~RkP~~Q~~s--~l~~VsDl~~~g~~~i~E~~~L 165 (348)
T PF09752_consen 90 PYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASL--ILENPYYGQRKPKDQRRS--SLRNVSDLFVMGRATILESRAL 165 (348)
T ss_pred CCCceEEEecCCCccchhhhhhhhhhHHHHcCcceE--EEecccccccChhHhhcc--cccchhHHHHHHhHHHHHHHHH
Confidence 447899999999998777766665555444422211 110 00 100 0000000 0011122222222334444667
Q ss_pred HHHHHHcCCCCCcccccCHHHHHHHHHhcc
Q psy5082 99 VDLLYEMGIKPDGLIGHSVGELGCAYADGA 128 (358)
Q Consensus 99 ~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ 128 (358)
...+++.|..|-.+.|-|+|-.-|+.++..
T Consensus 166 l~Wl~~~G~~~~g~~G~SmGG~~A~laa~~ 195 (348)
T PF09752_consen 166 LHWLEREGYGPLGLTGISMGGHMAALAASN 195 (348)
T ss_pred HHHHHhcCCCceEEEEechhHhhHHhhhhc
Confidence 777888899999999999998877765543
No 59
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=67.21 E-value=5.3 Score=38.04 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCCC-CcccccCHHHHHHHHHh
Q psy5082 97 GLVDLLYEMGIKP-DGLIGHSVGELGCAYAD 126 (358)
Q Consensus 97 al~~ll~~~Gi~P-~~viGhS~GE~aAa~~a 126 (358)
.+.++++++|+++ ..++|||+|-+.|...+
T Consensus 115 ~~~~~~~~l~~~~~~~l~G~S~Gg~ia~~~a 145 (351)
T TIGR01392 115 AQKLLLDHLGIEQIAAVVGGSMGGMQALEWA 145 (351)
T ss_pred HHHHHHHHcCCCCceEEEEECHHHHHHHHHH
Confidence 3456678899998 89999999998887665
No 60
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=67.11 E-value=4.7 Score=36.51 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=25.5
Q ss_pred HHHHHHHcCCCCCcccccCHHHHHHHHHhc
Q psy5082 98 LVDLLYEMGIKPDGLIGHSVGELGCAYADG 127 (358)
Q Consensus 98 l~~ll~~~Gi~P~~viGhS~GE~aAa~~aG 127 (358)
+.+++..+|+++-.++|||+|-+.|...+.
T Consensus 91 l~~~l~~l~~~~~~lvG~S~Gg~ia~~~a~ 120 (282)
T TIGR03343 91 VKGLMDALDIEKAHLVGNSMGGATALNFAL 120 (282)
T ss_pred HHHHHHHcCCCCeeEEEECchHHHHHHHHH
Confidence 456778899999999999999998877664
No 61
>PLN02965 Probable pheophorbidase
Probab=67.03 E-value=4.4 Score=36.46 Aligned_cols=29 Identities=31% Similarity=0.311 Sum_probs=23.5
Q ss_pred HHHHHHHcCC-CCCcccccCHHHHHHHHHh
Q psy5082 98 LVDLLYEMGI-KPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 98 l~~ll~~~Gi-~P~~viGhS~GE~aAa~~a 126 (358)
+.+++..+++ ++-.++|||+|-+.|..++
T Consensus 61 l~~~l~~l~~~~~~~lvGhSmGG~ia~~~a 90 (255)
T PLN02965 61 LFALLSDLPPDHKVILVGHSIGGGSVTEAL 90 (255)
T ss_pred HHHHHHhcCCCCCEEEEecCcchHHHHHHH
Confidence 5567778888 4999999999998877655
No 62
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=66.15 E-value=14 Score=34.35 Aligned_cols=49 Identities=24% Similarity=0.055 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHcCCC----CCcccccCHHHHHHHHHhccCCHHhHHHHHHHH
Q psy5082 93 CVQIGLVDLLYEMGIK----PDGLIGHSVGELGCAYADGALTAEQVIYAAFAR 141 (358)
Q Consensus 93 a~q~al~~ll~~~Gi~----P~~viGhS~GE~aAa~~aG~ls~~da~~l~~~r 141 (358)
+++.++-+.|++.+.+ +|.++|-|.|-+.|++.+-..+.++...+....
T Consensus 15 i~~~~vL~~Le~~~~~~~~~fD~i~GTSaGaiia~~la~g~~~~e~~~~~~~~ 67 (288)
T cd07213 15 IVQLVLLKRLAEEFPSFLDQIDLFAGTSAGSLIALGLALGYSPRQVLKLYEEV 67 (288)
T ss_pred HHHHHHHHHHHHhCcccccceeEEEEeCHHHHHHHHHHcCcCHHHHHHHHHHh
Confidence 3444555566665654 899999999999999888777888888765443
No 63
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=65.82 E-value=5.6 Score=38.10 Aligned_cols=28 Identities=50% Similarity=0.787 Sum_probs=22.8
Q ss_pred HHHHHHHcCCCCCcccccCHHHHHHHHH
Q psy5082 98 LVDLLYEMGIKPDGLIGHSVGELGCAYA 125 (358)
Q Consensus 98 l~~ll~~~Gi~P~~viGhS~GE~aAa~~ 125 (358)
+.+++.++++++-.++|||+|-+.|..+
T Consensus 145 l~~~l~~l~~~~~~lvGhS~Gg~ia~~~ 172 (360)
T PLN02679 145 ILDFLEEVVQKPTVLIGNSVGSLACVIA 172 (360)
T ss_pred HHHHHHHhcCCCeEEEEECHHHHHHHHH
Confidence 4466778899999999999999877543
No 64
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=65.67 E-value=9.6 Score=31.80 Aligned_cols=34 Identities=26% Similarity=0.202 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCC--CCCcccccCHHHHHHHHHh
Q psy5082 93 CVQIGLVDLLYEMGI--KPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 93 a~q~al~~ll~~~Gi--~P~~viGhS~GE~aAa~~a 126 (358)
+.+++..+.|.+.|+ .++.+.|-|.|.+.|+..+
T Consensus 11 ~~~~gvl~~l~~~~~~~~~~~~~G~SaGa~~~~~~~ 46 (155)
T cd01819 11 MYHAGVLSALAERGLLDCVTYLAGTSGGAWVAATLY 46 (155)
T ss_pred HHHHHHHHHHHHhCCccCCCEEEEEcHHHHHHHHHh
Confidence 477888899999999 9999999999999999888
No 65
>PRK07581 hypothetical protein; Validated
Probab=63.59 E-value=6.7 Score=37.01 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=21.1
Q ss_pred HHHHcCCCC-CcccccCHHHHHHHHHh
Q psy5082 101 LLYEMGIKP-DGLIGHSVGELGCAYAD 126 (358)
Q Consensus 101 ll~~~Gi~P-~~viGhS~GE~aAa~~a 126 (358)
++.++|+++ ..++|||+|-+.|...+
T Consensus 116 l~~~lgi~~~~~lvG~S~GG~va~~~a 142 (339)
T PRK07581 116 LTEKFGIERLALVVGWSMGAQQTYHWA 142 (339)
T ss_pred HHHHhCCCceEEEEEeCHHHHHHHHHH
Confidence 345699998 47899999999987665
No 66
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=63.33 E-value=6.4 Score=35.10 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=24.2
Q ss_pred HHHHHHcCCCCCcccccCHHHHHHHHHhc
Q psy5082 99 VDLLYEMGIKPDGLIGHSVGELGCAYADG 127 (358)
Q Consensus 99 ~~ll~~~Gi~P~~viGhS~GE~aAa~~aG 127 (358)
..++..+++++-.++|||+|-+.|..++.
T Consensus 87 ~~~~~~~~~~~~~liG~S~Gg~ia~~~a~ 115 (288)
T TIGR01250 87 EEVREKLGLDKFYLLGHSWGGMLAQEYAL 115 (288)
T ss_pred HHHHHHcCCCcEEEEEeehHHHHHHHHHH
Confidence 45567789999999999999998887764
No 67
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=62.22 E-value=21 Score=33.40 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=34.4
Q ss_pred HHHHHHHHHHc-CCC----CCcccccCHHHHHHHHHh-ccCCHHhHHHHHHHHh
Q psy5082 95 QIGLVDLLYEM-GIK----PDGLIGHSVGELGCAYAD-GALTAEQVIYAAFARG 142 (358)
Q Consensus 95 q~al~~ll~~~-Gi~----P~~viGhS~GE~aAa~~a-G~ls~~da~~l~~~r~ 142 (358)
++.+-+.|++. |.. +|.++|-|.|-+.|+.++ +.++.+|...+-...+
T Consensus 23 ~~~vL~~Le~~~~~~i~~~fDli~GTStGgiiA~~la~~~~~~~e~~~~y~~~~ 76 (308)
T cd07211 23 ALEILRKIEKLTGKPIHELFDYICGVSTGAILAFLLGLKKMSLDECEELYRKLG 76 (308)
T ss_pred HHHHHHHHHHHhCCCchhhcCEEEecChhHHHHHHHhcccccHHHHHHHHHHHH
Confidence 44444555543 443 599999999999999886 4699999888755433
No 68
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=62.11 E-value=11 Score=31.31 Aligned_cols=53 Identities=6% Similarity=-0.191 Sum_probs=40.5
Q ss_pred cccccccCceeCCeEeeehhhHHHHHHHHHHh-cCCCCC---c----eEEeeEEeecccccc
Q psy5082 302 EKYQHLLNYKIGEKFVVPVAAYIDLLLDFYLK-KNPNAK---H----VTIENFRTYEYDENV 355 (358)
Q Consensus 302 ~~~~~L~~H~v~g~~v~Paa~yle~a~~a~~~-~~~~~~---~----~~~~dv~~~~~~~~~ 355 (358)
.+.|++.||-- |.+++||-.-+|-.+.++.. .+.... + ..+.|++|.+++.+-
T Consensus 43 ~nepfF~gHFP-~~PimPGVLileamaQ~~g~~~~~~~~~~~~~~~~~gid~~kF~~~V~PG 103 (147)
T COG0764 43 INEPFFTGHFP-GDPIMPGVLILEAMAQAAGFLLGWLLGNKGKLGYFLGIDNAKFKRPVLPG 103 (147)
T ss_pred CCCCeeCCcCC-CCCCcchhHHHHHHHHHHHHHHhccccCCccEEEEEEecceeecCccCCC
Confidence 55678999964 68999999999998888765 333222 2 679999999998764
No 69
>PRK10673 acyl-CoA esterase; Provisional
Probab=61.92 E-value=7.6 Score=34.47 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=23.0
Q ss_pred HHHHHcCCCCCcccccCHHHHHHHHHhcc
Q psy5082 100 DLLYEMGIKPDGLIGHSVGELGCAYADGA 128 (358)
Q Consensus 100 ~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ 128 (358)
..+..+++++-.++|||+|-..|..++..
T Consensus 73 ~~l~~l~~~~~~lvGhS~Gg~va~~~a~~ 101 (255)
T PRK10673 73 DTLDALQIEKATFIGHSMGGKAVMALTAL 101 (255)
T ss_pred HHHHHcCCCceEEEEECHHHHHHHHHHHh
Confidence 34566788888999999999988877643
No 70
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=61.16 E-value=8.9 Score=37.36 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCCCCCc-ccccCHHHHHHHHHh
Q psy5082 96 IGLVDLLYEMGIKPDG-LIGHSVGELGCAYAD 126 (358)
Q Consensus 96 ~al~~ll~~~Gi~P~~-viGhS~GE~aAa~~a 126 (358)
-.+.++++++||+.-. ++|||+|-+.|...+
T Consensus 148 ~~~~~ll~~lgi~~~~~vvG~SmGG~ial~~a 179 (389)
T PRK06765 148 RVQKELIKSLGIARLHAVMGPSMGGMQAQEWA 179 (389)
T ss_pred HHHHHHHHHcCCCCceEEEEECHHHHHHHHHH
Confidence 4445677889998764 999999988876544
No 71
>PRK10349 carboxylesterase BioH; Provisional
Probab=60.87 E-value=8.5 Score=34.42 Aligned_cols=26 Identities=15% Similarity=0.150 Sum_probs=21.2
Q ss_pred HHHHcCCCCCcccccCHHHHHHHHHh
Q psy5082 101 LLYEMGIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 101 ll~~~Gi~P~~viGhS~GE~aAa~~a 126 (358)
.+.+.++++-.++|||+|-++|...+
T Consensus 67 ~l~~~~~~~~~lvGhS~Gg~ia~~~a 92 (256)
T PRK10349 67 AVLQQAPDKAIWLGWSLGGLVASQIA 92 (256)
T ss_pred HHHhcCCCCeEEEEECHHHHHHHHHH
Confidence 34457888889999999999988766
No 72
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=60.62 E-value=8.5 Score=37.16 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=25.2
Q ss_pred HHHHHHHHcCCCCC-cccccCHHHHHHHHHhcc
Q psy5082 97 GLVDLLYEMGIKPD-GLIGHSVGELGCAYADGA 128 (358)
Q Consensus 97 al~~ll~~~Gi~P~-~viGhS~GE~aAa~~aG~ 128 (358)
.+.++++++|+++. .++|||+|-+.|..++..
T Consensus 135 ~~~~~l~~l~~~~~~~lvG~S~Gg~ia~~~a~~ 167 (379)
T PRK00175 135 AQARLLDALGITRLAAVVGGSMGGMQALEWAID 167 (379)
T ss_pred HHHHHHHHhCCCCceEEEEECHHHHHHHHHHHh
Confidence 44567788999985 899999999888766543
No 73
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=60.57 E-value=9.3 Score=32.92 Aligned_cols=30 Identities=33% Similarity=0.395 Sum_probs=24.2
Q ss_pred HHHHHHHHcCCCCCcccccCHHHHHHHHHh
Q psy5082 97 GLVDLLYEMGIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 97 al~~ll~~~Gi~P~~viGhS~GE~aAa~~a 126 (358)
.+..+++.+|++.-.++|||+|-..++..+
T Consensus 33 ~~~~~~~~l~~~~~~~vG~S~Gg~~~~~~a 62 (230)
T PF00561_consen 33 DLEALREALGIKKINLVGHSMGGMLALEYA 62 (230)
T ss_dssp HHHHHHHHHTTSSEEEEEETHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEECCChHHHHHHH
Confidence 445667789999999999999988776655
No 74
>PRK13604 luxD acyl transferase; Provisional
Probab=60.24 E-value=8.9 Score=36.04 Aligned_cols=28 Identities=29% Similarity=0.188 Sum_probs=21.5
Q ss_pred HHHHHcCCCCCcccccCHHHHHHHHHhc
Q psy5082 100 DLLYEMGIKPDGLIGHSVGELGCAYADG 127 (358)
Q Consensus 100 ~ll~~~Gi~P~~viGhS~GE~aAa~~aG 127 (358)
+.+++.+..+-.++|||+|-.+|..+++
T Consensus 100 d~lk~~~~~~I~LiG~SmGgava~~~A~ 127 (307)
T PRK13604 100 DWLNTRGINNLGLIAASLSARIAYEVIN 127 (307)
T ss_pred HHHHhcCCCceEEEEECHHHHHHHHHhc
Confidence 4455667788889999999999766554
No 75
>PLN02578 hydrolase
Probab=59.79 E-value=8.4 Score=36.75 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=24.3
Q ss_pred HHHHHHHcCCCCCcccccCHHHHHHHHHhc
Q psy5082 98 LVDLLYEMGIKPDGLIGHSVGELGCAYADG 127 (358)
Q Consensus 98 l~~ll~~~Gi~P~~viGhS~GE~aAa~~aG 127 (358)
+.+.++..+.+|..++|||+|-+.|..++.
T Consensus 142 l~~~i~~~~~~~~~lvG~S~Gg~ia~~~A~ 171 (354)
T PLN02578 142 VADFVKEVVKEPAVLVGNSLGGFTALSTAV 171 (354)
T ss_pred HHHHHHHhccCCeEEEEECHHHHHHHHHHH
Confidence 345667778899999999999998877664
No 76
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=59.72 E-value=23 Score=33.93 Aligned_cols=37 Identities=19% Similarity=0.107 Sum_probs=31.3
Q ss_pred CCCCCcccccCHHHHHHHHHhccCCHHhHHHHHHHHh
Q psy5082 106 GIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARG 142 (358)
Q Consensus 106 Gi~P~~viGhS~GE~aAa~~aG~ls~~da~~l~~~r~ 142 (358)
+...|.+.|-|.|-+.|+.++-.+|.+|...+-...+
T Consensus 39 ~d~FDlIaGTStGgIIAa~la~g~s~~ei~~~y~~~~ 75 (344)
T cd07217 39 GDYFDFVGGTSTGSIIAACIALGMSVTDLLSFYTLNG 75 (344)
T ss_pred cccccEEEEecHHHHHHHHHHcCCCHHHHHHHHHhhh
Confidence 4567999999999999999988899999988765543
No 77
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=58.79 E-value=11 Score=32.51 Aligned_cols=32 Identities=34% Similarity=0.396 Sum_probs=24.6
Q ss_pred HHHHHHHcCCCCCcccccCHHHHHHHHHhccC
Q psy5082 98 LVDLLYEMGIKPDGLIGHSVGELGCAYADGAL 129 (358)
Q Consensus 98 l~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~l 129 (358)
+..+++.++.++-.++|||+|-..|+.++...
T Consensus 60 ~~~~~~~~~~~~~~l~G~S~Gg~ia~~~a~~~ 91 (251)
T TIGR03695 60 LATLLDQLGIEPFFLVGYSMGGRIALYYALQY 91 (251)
T ss_pred HHHHHHHcCCCeEEEEEeccHHHHHHHHHHhC
Confidence 33455677889999999999998887776543
No 78
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=54.36 E-value=12 Score=32.78 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=24.6
Q ss_pred HHHHHHHcCCCCCcccccCHHHHHHHHHhcc
Q psy5082 98 LVDLLYEMGIKPDGLIGHSVGELGCAYADGA 128 (358)
Q Consensus 98 l~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ 128 (358)
+.+.++..++++-.++|||+|-..|..++..
T Consensus 70 ~~~~i~~~~~~~~~l~G~S~Gg~~a~~~a~~ 100 (257)
T TIGR03611 70 VLQLLDALNIERFHFVGHALGGLIGLQLALR 100 (257)
T ss_pred HHHHHHHhCCCcEEEEEechhHHHHHHHHHH
Confidence 3455667788888999999999988877653
No 79
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=54.02 E-value=15 Score=32.85 Aligned_cols=30 Identities=27% Similarity=0.200 Sum_probs=20.8
Q ss_pred HHHHHHHHc-----CCCCCcccccCHHHHHHHHHh
Q psy5082 97 GLVDLLYEM-----GIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 97 al~~ll~~~-----Gi~P~~viGhS~GE~aAa~~a 126 (358)
++-.++..+ +-++-.++|||+|-+.|..+.
T Consensus 69 ~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l 103 (225)
T PF07819_consen 69 AIKYILELYKSNRPPPRSVILVGHSMGGLVARSAL 103 (225)
T ss_pred HHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHH
Confidence 344444444 567778999999998886544
No 80
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=53.28 E-value=9.3 Score=32.67 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=14.8
Q ss_pred HHHHHcCCCCCcccccCH
Q psy5082 100 DLLYEMGIKPDGLIGHSV 117 (358)
Q Consensus 100 ~ll~~~Gi~P~~viGhS~ 117 (358)
..|++.|..||.|+|||-
T Consensus 58 ~~L~~~Gf~PDvI~~H~G 75 (171)
T PF12000_consen 58 RQLRAQGFVPDVIIAHPG 75 (171)
T ss_pred HHHHHcCCCCCEEEEcCC
Confidence 456677999999999983
No 81
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=52.70 E-value=11 Score=32.21 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCCCCcccccCHHHHHHHHHh
Q psy5082 95 QIGLVDLLYEMGIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 95 q~al~~ll~~~Gi~P~~viGhS~GE~aAa~~a 126 (358)
.-.+..++..+|+.+-.++|||+|.+.+..++
T Consensus 75 ~~~~~~~~~~~~~~~~~l~G~S~Gg~~~~~~~ 106 (282)
T COG0596 75 ADDLAALLDALGLEKVVLVGHSMGGAVALALA 106 (282)
T ss_pred HHHHHHHHHHhCCCceEEEEecccHHHHHHHH
Confidence 34455667789999999999999977666554
No 82
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=49.88 E-value=15 Score=34.70 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=23.7
Q ss_pred HHHHHHcCCCCCcccccCHHHHHHHHHhc
Q psy5082 99 VDLLYEMGIKPDGLIGHSVGELGCAYADG 127 (358)
Q Consensus 99 ~~ll~~~Gi~P~~viGhS~GE~aAa~~aG 127 (358)
..++..+|+.+-.++|||+|-+.|..++.
T Consensus 188 ~~~~~~~~~~~~~lvG~S~Gg~~a~~~a~ 216 (371)
T PRK14875 188 LAFLDALGIERAHLVGHSMGGAVALRLAA 216 (371)
T ss_pred HHHHHhcCCccEEEEeechHHHHHHHHHH
Confidence 45667889888899999999998876653
No 83
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=48.90 E-value=20 Score=35.58 Aligned_cols=33 Identities=24% Similarity=0.152 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHhcc
Q psy5082 96 IGLVDLLYEMGIKPDGLIGHSVGELGCAYADGA 128 (358)
Q Consensus 96 ~al~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ 128 (358)
-.+-++++..|.+|-.++|||||-+.+.+....
T Consensus 150 ~lIe~~~~~~g~~kV~LVGHSMGGlva~~fl~~ 182 (440)
T PLN02733 150 KKLETVYKASGGKKVNIISHSMGGLLVKCFMSL 182 (440)
T ss_pred HHHHHHHHHcCCCCEEEEEECHhHHHHHHHHHH
Confidence 334455667899999999999999998876543
No 84
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=48.57 E-value=17 Score=33.69 Aligned_cols=30 Identities=23% Similarity=0.090 Sum_probs=24.1
Q ss_pred HHHHHHcCCCCCcccccCHHHHHHHHHhcc
Q psy5082 99 VDLLYEMGIKPDGLIGHSVGELGCAYADGA 128 (358)
Q Consensus 99 ~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ 128 (358)
..++..+++++-.++|||+|-+.++..+..
T Consensus 86 ~~l~~~l~~~~~~lvG~S~GG~ia~~~a~~ 115 (306)
T TIGR01249 86 EKLREKLGIKNWLVFGGSWGSTLALAYAQT 115 (306)
T ss_pred HHHHHHcCCCCEEEEEECHHHHHHHHHHHH
Confidence 455677899988999999999888776644
No 85
>PRK06489 hypothetical protein; Provisional
Probab=48.49 E-value=22 Score=33.94 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=20.9
Q ss_pred HHHcCCCCCc-ccccCHHHHHHHHHhc
Q psy5082 102 LYEMGIKPDG-LIGHSVGELGCAYADG 127 (358)
Q Consensus 102 l~~~Gi~P~~-viGhS~GE~aAa~~aG 127 (358)
...+|++... ++|||+|-+.|+..+-
T Consensus 147 ~~~lgi~~~~~lvG~SmGG~vAl~~A~ 173 (360)
T PRK06489 147 TEGLGVKHLRLILGTSMGGMHAWMWGE 173 (360)
T ss_pred HHhcCCCceeEEEEECHHHHHHHHHHH
Confidence 3668998764 8999999999887663
No 86
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=47.58 E-value=28 Score=29.68 Aligned_cols=57 Identities=5% Similarity=-0.210 Sum_probs=39.6
Q ss_pred EecCCcccccccCceeCCeEeeehhhHHHHHHHHHHh-cCC--CCCc---eEEeeEEeecccccc
Q psy5082 297 GICSKEKYQHLLNYKIGEKFVVPVAAYIDLLLDFYLK-KNP--NAKH---VTIENFRTYEYDENV 355 (358)
Q Consensus 297 ~~l~~~~~~~L~~H~v~g~~v~Paa~yle~a~~a~~~-~~~--~~~~---~~~~dv~~~~~~~~~ 355 (358)
.+++.++ .|+.+|- .+.+++||...+|....++.. .+. .... ..+++++|++++.+.
T Consensus 56 k~Vs~~e-~ff~gHF-p~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~gi~~~kfr~~v~Pg 118 (169)
T TIGR01749 56 LDIRPDL-WFFGCHF-IGDPVMPGCLGLDAMWQLVGFFLGWLGGPGRGRALGVGEVKFTGQVLPT 118 (169)
T ss_pred EEcCCCC-cceeCCC-CCCCcCchHHHHHHHHHHHHHHHhccccCCceEEeeccEEEEccCEecC
Confidence 3344333 5788886 567899999999999988765 321 1111 567899999987764
No 87
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=46.95 E-value=17 Score=33.22 Aligned_cols=30 Identities=33% Similarity=0.399 Sum_probs=23.2
Q ss_pred HHHHHHHHcC-CCCCcccccCHHHHHHHHHh
Q psy5082 97 GLVDLLYEMG-IKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 97 al~~ll~~~G-i~P~~viGhS~GE~aAa~~a 126 (358)
.+.+.+++++ .++-.++|||+|-+++..++
T Consensus 75 ~l~~~i~~l~~~~~v~lvGhS~GG~v~~~~a 105 (273)
T PLN02211 75 PLIDFLSSLPENEKVILVGHSAGGLSVTQAI 105 (273)
T ss_pred HHHHHHHhcCCCCCEEEEEECchHHHHHHHH
Confidence 3556667764 58889999999999887765
No 88
>PRK03204 haloalkane dehalogenase; Provisional
Probab=46.92 E-value=16 Score=33.56 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=22.7
Q ss_pred HHHHHHHcCCCCCcccccCHHHHHHHHHh
Q psy5082 98 LVDLLYEMGIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 98 l~~ll~~~Gi~P~~viGhS~GE~aAa~~a 126 (358)
+..+++.+|+++-.++|||+|-..|...+
T Consensus 91 ~~~~~~~~~~~~~~lvG~S~Gg~va~~~a 119 (286)
T PRK03204 91 IGEFVDHLGLDRYLSMGQDWGGPISMAVA 119 (286)
T ss_pred HHHHHHHhCCCCEEEEEECccHHHHHHHH
Confidence 34566778999999999999988775544
No 89
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=46.01 E-value=21 Score=30.67 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=18.4
Q ss_pred HcCCCCCcccccCHHHHHHHHHhc
Q psy5082 104 EMGIKPDGLIGHSVGELGCAYADG 127 (358)
Q Consensus 104 ~~Gi~P~~viGhS~GE~aAa~~aG 127 (358)
...-++-.++|||+|-+.|..++.
T Consensus 61 ~~~~~~~~lvG~S~Gg~~a~~~a~ 84 (245)
T TIGR01738 61 AQAPDPAIWLGWSLGGLVALHIAA 84 (245)
T ss_pred HhCCCCeEEEEEcHHHHHHHHHHH
Confidence 333468889999999998877663
No 90
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=44.36 E-value=14 Score=30.96 Aligned_cols=32 Identities=31% Similarity=0.438 Sum_probs=24.2
Q ss_pred HHHHHHHH-HHcCCCCCcccccCHHHHHHHHHh
Q psy5082 95 QIGLVDLL-YEMGIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 95 q~al~~ll-~~~Gi~P~~viGhS~GE~aAa~~a 126 (358)
+.+..+.| ...+..+|.+.|-|.|-+.|++.+
T Consensus 13 ~~G~l~~L~~~~~~~~d~i~GtS~Gal~a~~~~ 45 (204)
T PF01734_consen 13 QAGVLKALGQGLGERFDVISGTSAGALNAALLA 45 (204)
T ss_dssp CHHHHHHHCCTGCCT-SEEEEECCHHHHHHHHH
T ss_pred HHHHHHHHhhhhCCCccEEEEcChhhhhHHHHH
Confidence 44555667 678899999999999999996544
No 91
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=44.01 E-value=67 Score=30.70 Aligned_cols=35 Identities=26% Similarity=0.213 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHH--cCCCCCcc--cccCHHHHHHHH
Q psy5082 90 GIACVQIGLVDLLYE--MGIKPDGL--IGHSVGELGCAY 124 (358)
Q Consensus 90 ~~~a~q~al~~ll~~--~Gi~P~~v--iGhS~GE~aAa~ 124 (358)
.++.--.|+.+.|++ .|++|.-+ -|||+|--+++.
T Consensus 193 dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~ 231 (365)
T PF05677_consen 193 DLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAE 231 (365)
T ss_pred HHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHH
Confidence 345566788888985 79999876 499999777653
No 92
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=41.36 E-value=22 Score=35.66 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=23.5
Q ss_pred HHHHHcCCCCCcccccCHHHHHHHHHhc
Q psy5082 100 DLLYEMGIKPDGLIGHSVGELGCAYADG 127 (358)
Q Consensus 100 ~ll~~~Gi~P~~viGhS~GE~aAa~~aG 127 (358)
.++..+|+++-.++|||+|-+.|..++.
T Consensus 266 ~ll~~lg~~k~~LVGhSmGG~iAl~~A~ 293 (481)
T PLN03087 266 SVLERYKVKSFHIVAHSLGCILALALAV 293 (481)
T ss_pred HHHHHcCCCCEEEEEECHHHHHHHHHHH
Confidence 3567789999999999999998877664
No 93
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=40.90 E-value=35 Score=27.23 Aligned_cols=31 Identities=23% Similarity=0.156 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHHh
Q psy5082 96 IGLVDLLYEMGIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 96 ~al~~ll~~~Gi~P~~viGhS~GE~aAa~~a 126 (358)
-.+.+++...+-.-=.+.|||+|--.|..++
T Consensus 52 ~~l~~~~~~~~~~~i~itGHSLGGalA~l~a 82 (140)
T PF01764_consen 52 DALKELVEKYPDYSIVITGHSLGGALASLAA 82 (140)
T ss_dssp HHHHHHHHHSTTSEEEEEEETHHHHHHHHHH
T ss_pred HHHHHHHhcccCccchhhccchHHHHHHHHH
Confidence 3344444455533335789999987766554
No 94
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=40.81 E-value=24 Score=31.37 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHcCCCCC--cccccCHHHHHHHHHh
Q psy5082 91 IACVQIGLVDLLYEMGIKPD--GLIGHSVGELGCAYAD 126 (358)
Q Consensus 91 ~~a~q~al~~ll~~~Gi~P~--~viGhS~GE~aAa~~a 126 (358)
.|..+--+-.+=+.+++.++ +++|+|+|-+.|+.++
T Consensus 96 ~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~ 133 (251)
T PF00756_consen 96 TFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLA 133 (251)
T ss_dssp HHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHH
T ss_pred eehhccchhHHHHhcccccceeEEeccCCCcHHHHHHH
Confidence 44444444444466899888 9999999999987754
No 95
>PRK10749 lysophospholipase L2; Provisional
Probab=40.09 E-value=26 Score=32.91 Aligned_cols=24 Identities=13% Similarity=-0.072 Sum_probs=19.0
Q ss_pred HHcCCCCCcccccCHHHHHHHHHh
Q psy5082 103 YEMGIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 103 ~~~Gi~P~~viGhS~GE~aAa~~a 126 (358)
+..+..|-.++|||+|-..|+..+
T Consensus 126 ~~~~~~~~~l~GhSmGG~ia~~~a 149 (330)
T PRK10749 126 QPGPYRKRYALAHSMGGAILTLFL 149 (330)
T ss_pred hcCCCCCeEEEEEcHHHHHHHHHH
Confidence 344788999999999998886544
No 96
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=39.60 E-value=44 Score=28.52 Aligned_cols=58 Identities=5% Similarity=-0.216 Sum_probs=39.8
Q ss_pred EEecCCcccccccCceeCCeEeeehhhHHHHHHHHHHh-cCC--CCCc---eEEeeEEeecccccc
Q psy5082 296 LGICSKEKYQHLLNYKIGEKFVVPVAAYIDLLLDFYLK-KNP--NAKH---VTIENFRTYEYDENV 355 (358)
Q Consensus 296 ~~~l~~~~~~~L~~H~v~g~~v~Paa~yle~a~~a~~~-~~~--~~~~---~~~~dv~~~~~~~~~ 355 (358)
..+++.++ .|+.+|- .+.+++||...+|....++.. .+. .... ..+++++|++++.+-
T Consensus 58 ~k~v~~~e-~ff~gHF-p~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~g~~~~kfr~~v~Pg 121 (172)
T PRK05174 58 ELDINPDL-WFFGCHF-IGDPVMPGCLGLDAMWQLVGFYLGWLGGPGKGRALGVGEVKFTGQVLPT 121 (172)
T ss_pred EEECCCCC-ccccCCC-CCCCcCchHHHHHHHHHHHHHHHhcccccCceEEeeccEEEECccCcCC
Confidence 33444333 4788887 567899999999999988765 321 1111 567889999887654
No 97
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=39.23 E-value=72 Score=31.17 Aligned_cols=73 Identities=25% Similarity=0.416 Sum_probs=41.7
Q ss_pred CCCEEEEeCCCCcchHHHHHHHhccHHHHHHHHHHHHHHhhC-----CCCcHHHhcCCCCcchh-hhhHhHHHHHHHHHH
Q psy5082 23 NRPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKEN-----NVDIMNILTNEEDKTIF-DNILNSFVGIACVQI 96 (358)
Q Consensus 23 ~~~v~fvF~Gqg~~~~~m~~~L~~~p~f~~~~~~~~~~l~~~-----g~~l~~~l~~~~~~~~~-~~~~~~q~~~~a~q~ 96 (358)
...++.+++|+|. |...-++ ..+.|+.. |++-+.++......... ++..
T Consensus 259 sd~~av~~SGDGG-Wr~lDk~-------------v~~~l~~~gvpVvGvdsLRYfW~~rtPe~~a~Dl~----------- 313 (456)
T COG3946 259 SDTVAVFYSGDGG-WRDLDKE-------------VAEALQKQGVPVVGVDSLRYFWSERTPEQIAADLS----------- 313 (456)
T ss_pred cceEEEEEecCCc-hhhhhHH-------------HHHHHHHCCCceeeeehhhhhhccCCHHHHHHHHH-----------
Confidence 3468899999985 5443332 34455554 55544444443222111 1111
Q ss_pred HHHHHH-HHcCCCCCcccccCHHHH
Q psy5082 97 GLVDLL-YEMGIKPDGLIGHSVGEL 120 (358)
Q Consensus 97 al~~ll-~~~Gi~P~~viGhS~GE~ 120 (358)
.+.+.+ ++||.++-.++|+|+|.=
T Consensus 314 r~i~~y~~~w~~~~~~liGySfGAD 338 (456)
T COG3946 314 RLIRFYARRWGAKRVLLIGYSFGAD 338 (456)
T ss_pred HHHHHHHHhhCcceEEEEeecccch
Confidence 123444 459999999999999953
No 98
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=38.41 E-value=32 Score=29.77 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=20.8
Q ss_pred HHHHHcCCCCCcccccCHHHHHHHHHhc
Q psy5082 100 DLLYEMGIKPDGLIGHSVGELGCAYADG 127 (358)
Q Consensus 100 ~ll~~~Gi~P~~viGhS~GE~aAa~~aG 127 (358)
+++.+.+-+...++|.|+|-+-|.+++-
T Consensus 51 ~~i~~~~~~~~~liGSSlGG~~A~~La~ 78 (187)
T PF05728_consen 51 QLIEELKPENVVLIGSSLGGFYATYLAE 78 (187)
T ss_pred HHHHhCCCCCeEEEEEChHHHHHHHHHH
Confidence 4455555445699999999999988763
No 99
>TIGR03607 patatin-related protein. This bacterial protein family contains an N-terminal patatin domain, where patatins are plant storage proteins capable of phospholipase activity (see pfam01734). Regions of strong sequence conservation are separated by regions of significant sequence and length variability. Members of the family are distributed sporadically among bacteria. The function is unknown.
Probab=38.09 E-value=37 Score=35.98 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=24.2
Q ss_pred HHHHHH---HcCCCCCcccccCHHHHHHHHHhc
Q psy5082 98 LVDLLY---EMGIKPDGLIGHSVGELGCAYADG 127 (358)
Q Consensus 98 l~~ll~---~~Gi~P~~viGhS~GE~aAa~~aG 127 (358)
+.+.|. +.++.++.+.|.|.|.+.|+.+|.
T Consensus 53 l~~~l~~~~~~~~~~d~iaGTSAGAInaa~lA~ 85 (739)
T TIGR03607 53 LLELLGAHLRLRVRVDVISGTSAGGINGVLLAY 85 (739)
T ss_pred HHHHhhhhhccCCCCceEEeeCHHHHHHHHHHc
Confidence 444444 568999999999999998888875
No 100
>PRK10985 putative hydrolase; Provisional
Probab=37.85 E-value=34 Score=32.11 Aligned_cols=24 Identities=29% Similarity=0.265 Sum_probs=18.3
Q ss_pred HHcCCCCCcccccCHHHHHHHHHh
Q psy5082 103 YEMGIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 103 ~~~Gi~P~~viGhS~GE~aAa~~a 126 (358)
+..+..|-.++|||+|-..++..+
T Consensus 126 ~~~~~~~~~~vG~S~GG~i~~~~~ 149 (324)
T PRK10985 126 REFGHVPTAAVGYSLGGNMLACLL 149 (324)
T ss_pred HhCCCCCEEEEEecchHHHHHHHH
Confidence 447888999999999997554433
No 101
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=37.55 E-value=77 Score=29.62 Aligned_cols=35 Identities=26% Similarity=0.148 Sum_probs=28.7
Q ss_pred CCcccccCHHHHHHHHHhc-cCCHHhHHHHHHHHhh
Q psy5082 109 PDGLIGHSVGELGCAYADG-ALTAEQVIYAAFARGK 143 (358)
Q Consensus 109 P~~viGhS~GE~aAa~~aG-~ls~~da~~l~~~r~~ 143 (358)
.|.++|-|.|-+.|+.++- .+|.+|.+.+-...+.
T Consensus 43 fDli~GTStGgiiA~~l~~~~~t~~e~~~~y~~~~~ 78 (309)
T cd07216 43 FDLIGGTSTGGLIAIMLGRLRMTVDECIDAYTRLAK 78 (309)
T ss_pred cCeeeeccHHHHHHHHhcccCCCHHHHHHHHHHHhH
Confidence 5899999999999998874 6899999877655443
No 102
>PLN00021 chlorophyllase
Probab=36.78 E-value=93 Score=29.28 Aligned_cols=22 Identities=23% Similarity=0.049 Sum_probs=17.4
Q ss_pred CCCcccccCHHHHHHHHHhccC
Q psy5082 108 KPDGLIGHSVGELGCAYADGAL 129 (358)
Q Consensus 108 ~P~~viGhS~GE~aAa~~aG~l 129 (358)
+.-.++|||+|-.+|..++...
T Consensus 126 ~~v~l~GHS~GG~iA~~lA~~~ 147 (313)
T PLN00021 126 SKLALAGHSRGGKTAFALALGK 147 (313)
T ss_pred hheEEEEECcchHHHHHHHhhc
Confidence 4457899999999998877543
No 103
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=36.26 E-value=1.2e+02 Score=27.44 Aligned_cols=34 Identities=21% Similarity=0.095 Sum_probs=28.8
Q ss_pred CCcccccCHHHHHHHHHhcc-CCHHhHHHHHHHHh
Q psy5082 109 PDGLIGHSVGELGCAYADGA-LTAEQVIYAAFARG 142 (358)
Q Consensus 109 P~~viGhS~GE~aAa~~aG~-ls~~da~~l~~~r~ 142 (358)
.|.++|-|.|-+.|+.++-. .+.++...+....+
T Consensus 35 fd~i~GtS~G~iia~~l~~~~~~~~~~~~~~~~~~ 69 (258)
T cd07199 35 FDLIAGTSTGGIIALGLALGRYSAEELVELYEELG 69 (258)
T ss_pred cceeeeccHHHHHHHHHhcCCCCHHHHHHHHHHHh
Confidence 89999999999999887766 99999998765544
No 104
>KOG1454|consensus
Probab=36.00 E-value=31 Score=32.71 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=23.7
Q ss_pred HHHHHHHcCCCCCcccccCHHHHHHHHHh
Q psy5082 98 LVDLLYEMGIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 98 l~~ll~~~Gi~P~~viGhS~GE~aAa~~a 126 (358)
+-+.++..+.+|..++|||+|-+.|..+|
T Consensus 118 i~~~~~~~~~~~~~lvghS~Gg~va~~~A 146 (326)
T KOG1454|consen 118 IRRFVKEVFVEPVSLVGHSLGGIVALKAA 146 (326)
T ss_pred HHHHHHhhcCcceEEEEeCcHHHHHHHHH
Confidence 34566778889989999999999987665
No 105
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=35.91 E-value=1.2e+02 Score=23.46 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=23.5
Q ss_pred CCcccccCHHHHHHHHHh-----ccCCHHhHHHHHH
Q psy5082 109 PDGLIGHSVGELGCAYAD-----GALTAEQVIYAAF 139 (358)
Q Consensus 109 P~~viGhS~GE~aAa~~a-----G~ls~~da~~l~~ 139 (358)
|-.+-+|+-|+++-|.+| |.+|.++|+.++.
T Consensus 50 ~PR~dkh~kGd~aEA~iAyAWLeg~it~eEaveil~ 85 (120)
T PF11469_consen 50 PPRTDKHGKGDIAEALIAYAWLEGKITIEEAVEILK 85 (120)
T ss_dssp --CGGCCGHHHHHHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred cccccccCccHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 445679999998876554 9999999999874
No 106
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=35.86 E-value=33 Score=34.00 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=17.4
Q ss_pred CCCCCcccccCHHHHHHHHHh
Q psy5082 106 GIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 106 Gi~P~~viGhS~GE~aAa~~a 126 (358)
+++.-.++|||+|.-+|..++
T Consensus 117 ~l~~VhLIGHSLGAhIAg~ag 137 (442)
T TIGR03230 117 PWDNVHLLGYSLGAHVAGIAG 137 (442)
T ss_pred CCCcEEEEEECHHHHHHHHHH
Confidence 467778999999999888765
No 107
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=35.37 E-value=24 Score=30.05 Aligned_cols=19 Identities=32% Similarity=0.322 Sum_probs=14.8
Q ss_pred CCCcccccCHHHHHHHHHh
Q psy5082 108 KPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 108 ~P~~viGhS~GE~aAa~~a 126 (358)
+|..++|||+|-++++-.+
T Consensus 55 ~~~ilVaHSLGc~~~l~~l 73 (171)
T PF06821_consen 55 EPTILVAHSLGCLTALRWL 73 (171)
T ss_dssp TTEEEEEETHHHHHHHHHH
T ss_pred CCeEEEEeCHHHHHHHHHH
Confidence 4568999999998876543
No 108
>KOG3847|consensus
Probab=34.67 E-value=24 Score=33.17 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=15.7
Q ss_pred CcccccCHHHHHHHHHhcc
Q psy5082 110 DGLIGHSVGELGCAYADGA 128 (358)
Q Consensus 110 ~~viGhS~GE~aAa~~aG~ 128 (358)
.+|+|||+|--+++..++.
T Consensus 243 ~aViGHSFGgAT~i~~ss~ 261 (399)
T KOG3847|consen 243 AAVIGHSFGGATSIASSSS 261 (399)
T ss_pred hhheeccccchhhhhhhcc
Confidence 5799999999888777664
No 109
>PHA02857 monoglyceride lipase; Provisional
Probab=34.11 E-value=38 Score=30.50 Aligned_cols=23 Identities=30% Similarity=0.245 Sum_probs=18.8
Q ss_pred HcCCCCCcccccCHHHHHHHHHh
Q psy5082 104 EMGIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 104 ~~Gi~P~~viGhS~GE~aAa~~a 126 (358)
+++.+|-.++|||+|-..|..++
T Consensus 93 ~~~~~~~~lvG~S~GG~ia~~~a 115 (276)
T PHA02857 93 TYPGVPVFLLGHSMGATISILAA 115 (276)
T ss_pred hCCCCCEEEEEcCchHHHHHHHH
Confidence 45667888999999999887766
No 110
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=33.43 E-value=33 Score=31.59 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=17.7
Q ss_pred CCCCcccccCHHHHHHHHHhccC
Q psy5082 107 IKPDGLIGHSVGELGCAYADGAL 129 (358)
Q Consensus 107 i~P~~viGhS~GE~aAa~~aG~l 129 (358)
.+.-.++|||+|-..|..++..+
T Consensus 111 ~~~i~lIGhSlGa~vAg~~a~~~ 133 (275)
T cd00707 111 LENVHLIGHSLGAHVAGFAGKRL 133 (275)
T ss_pred hHHEEEEEecHHHHHHHHHHHHh
Confidence 34567899999999998876433
No 111
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=32.36 E-value=61 Score=26.97 Aligned_cols=57 Identities=4% Similarity=-0.105 Sum_probs=38.9
Q ss_pred EecCCcccccccCceeCCeEeeehhhHHHHHHHHHHh----cCCC-C----C-c---eEEeeEEeecccccc
Q psy5082 297 GICSKEKYQHLLNYKIGEKFVVPVAAYIDLLLDFYLK----KNPN-A----K-H---VTIENFRTYEYDENV 355 (358)
Q Consensus 297 ~~l~~~~~~~L~~H~v~g~~v~Paa~yle~a~~a~~~----~~~~-~----~-~---~~~~dv~~~~~~~~~ 355 (358)
.+++.++ +|+.+|= -+.+++|+...+|..+.++.. .+.. . . . ..+++++|++++.+-
T Consensus 33 k~v~~~e-~ff~gHF-p~~pvmPG~L~iEamaQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kfr~~v~Pg 102 (150)
T cd01287 33 KDIDPDD-WFFPCHF-HGDPVMPGSLGLEAMIQLLQFYLIWLGLGTGVDNPRFQGAPGGPGEWKYRGQITPH 102 (150)
T ss_pred EEcCCCC-ceEcCCC-CCCCcCchHHHHHHHHHHHHHHHhhcccccccCcccceeEeccceEEEECccCcCC
Confidence 3344343 5889986 467899999999999988654 1211 0 1 1 357899999988764
No 112
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=32.16 E-value=46 Score=30.36 Aligned_cols=21 Identities=5% Similarity=-0.144 Sum_probs=16.9
Q ss_pred CCCCCcccccCHHHHHHHHHh
Q psy5082 106 GIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 106 Gi~P~~viGhS~GE~aAa~~a 126 (358)
|++.-.++|||+|-+.++..+
T Consensus 98 g~~~i~l~G~S~Gg~~a~~~a 118 (274)
T TIGR03100 98 HLRRIVAWGLCDAASAALLYA 118 (274)
T ss_pred CCCcEEEEEECHHHHHHHHHh
Confidence 777778899999998876653
No 113
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=31.96 E-value=58 Score=30.88 Aligned_cols=29 Identities=10% Similarity=-0.024 Sum_probs=22.4
Q ss_pred HHHHHHHcCCCCCcccccCHHHHHHHHHh
Q psy5082 98 LVDLLYEMGIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 98 l~~ll~~~Gi~P~~viGhS~GE~aAa~~a 126 (358)
+-.+.+..|.++-.++|||+|-..++..+
T Consensus 126 v~~l~~~~~~~~i~lvGhS~GG~i~~~~~ 154 (350)
T TIGR01836 126 VDYICRTSKLDQISLLGICQGGTFSLCYA 154 (350)
T ss_pred HHHHHHHhCCCcccEEEECHHHHHHHHHH
Confidence 33445667999999999999998876654
No 114
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=31.80 E-value=2.3e+02 Score=24.27 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=17.8
Q ss_pred CCCCCEEEEeCCCCcchHHHHHHHh
Q psy5082 21 SNNRPVWLLFSGMGSQWQAMGKDLM 45 (358)
Q Consensus 21 ~~~~~v~fvF~Gqg~~~~~m~~~L~ 45 (358)
.....|+.+-||.++.-.++.....
T Consensus 16 d~A~~Vav~VPG~~t~~~~~~~~~~ 40 (177)
T PF06259_consen 16 DTADHVAVLVPGTGTTLDSFLGGMD 40 (177)
T ss_pred CCcCeeEEEcCCCCCCcccccchhH
Confidence 3456899999999988665555433
No 115
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=31.78 E-value=46 Score=29.37 Aligned_cols=25 Identities=20% Similarity=0.070 Sum_probs=16.2
Q ss_pred HHHcCCCCCcccccCHHHHHHHHHh
Q psy5082 102 LYEMGIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 102 l~~~Gi~P~~viGhS~GE~aAa~~a 126 (358)
++...-.+-.+.|||+|--.|..++
T Consensus 122 ~~~~p~~~i~vtGHSLGGaiA~l~a 146 (229)
T cd00519 122 LKQYPDYKIIVTGHSLGGALASLLA 146 (229)
T ss_pred HhhCCCceEEEEccCHHHHHHHHHH
Confidence 3333333446899999987776554
No 116
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=31.11 E-value=33 Score=32.47 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=15.4
Q ss_pred CCCcccccCHHHHHHHHHh
Q psy5082 108 KPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 108 ~P~~viGhS~GE~aAa~~a 126 (358)
.|-.++|||+|-..|+.++
T Consensus 162 ~~~~LvGhSmGG~val~~a 180 (349)
T PLN02385 162 LPSFLFGQSMGGAVALKVH 180 (349)
T ss_pred CCEEEEEeccchHHHHHHH
Confidence 3678999999998886654
No 117
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=30.47 E-value=1.5e+02 Score=26.57 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=21.0
Q ss_pred HHHHHHHHHHH----cCCCCCcccccCHHHHHHHH
Q psy5082 94 VQIGLVDLLYE----MGIKPDGLIGHSVGELGCAY 124 (358)
Q Consensus 94 ~q~al~~ll~~----~Gi~P~~viGhS~GE~aAa~ 124 (358)
..-+|+++|+. .|.+--.+++||||-.....
T Consensus 75 s~~~l~~~L~~L~~~~~~~~I~ilaHSMG~rv~~~ 109 (233)
T PF05990_consen 75 SGPALARFLRDLARAPGIKRIHILAHSMGNRVLLE 109 (233)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEEeCchHHHHHH
Confidence 34555566554 36667779999999876654
No 118
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=30.04 E-value=52 Score=28.62 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=18.9
Q ss_pred HHHHHcCCC-CCcccccCHHHHHHHHHh
Q psy5082 100 DLLYEMGIK-PDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 100 ~ll~~~Gi~-P~~viGhS~GE~aAa~~a 126 (358)
+.++...-+ |=.++|||+|-+.|..+|
T Consensus 57 ~~I~~~~~~gp~~L~G~S~Gg~lA~E~A 84 (229)
T PF00975_consen 57 EAIRARQPEGPYVLAGWSFGGILAFEMA 84 (229)
T ss_dssp HHHHHHTSSSSEEEEEETHHHHHHHHHH
T ss_pred HHhhhhCCCCCeeehccCccHHHHHHHH
Confidence 344443333 889999999988776544
No 119
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=28.79 E-value=38 Score=32.58 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=28.2
Q ss_pred cCCCCCcccccCHHHHHHHHHhccCCHHhHHHHHHH
Q psy5082 105 MGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFA 140 (358)
Q Consensus 105 ~Gi~P~~viGhS~GE~aAa~~aG~ls~~da~~l~~~ 140 (358)
....+-.++|||+|-+++...+|+=..-+.+...+.
T Consensus 156 ld~~~Vgv~GhS~GG~T~m~laGA~~~~~~~~~~C~ 191 (365)
T COG4188 156 LDPQRVGVLGHSFGGYTAMELAGAELDAEALLQHCE 191 (365)
T ss_pred cCccceEEEecccccHHHHHhccccccHHHHHHHhh
Confidence 345677899999999999999998776666655443
No 120
>PF09968 DUF2202: Uncharacterized protein domain (DUF2202); InterPro: IPR019243 This domain, found in various hypothetical archaeal proteins, has no known function.; PDB: 3Q4O_A 3Q4Q_A 3Q4R_A 3Q4N_A.
Probab=28.66 E-value=64 Score=27.27 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCCCCcccccCHHHHH---------HHHHhccCCHHhHHHHHHHHh
Q psy5082 97 GLVDLLYEMGIKPDGLIGHSVGELG---------CAYADGALTAEQVIYAAFARG 142 (358)
Q Consensus 97 al~~ll~~~Gi~P~~viGhS~GE~a---------Aa~~aG~ls~~da~~l~~~r~ 142 (358)
++..++..+|+ ++-+.+.+.|+++ .++..|..|+.||+++-+...
T Consensus 44 av~~Ll~kY~l-~dP~~~~~~G~f~~~~lq~LY~~Lv~~G~~S~~dAl~vga~iE 97 (162)
T PF09968_consen 44 AVKALLEKYGL-EDPVEGDPVGVFTNPELQELYNQLVEQGSKSLEDALKVGALIE 97 (162)
T ss_dssp HHHHHHHHTT----S-SS-STT--SSHHHHHHHHHHHHHHTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCCCccCCCCCcCcHHHHHHHHHHHHHhhhcHHHHHHHhHHHH
Confidence 45567888998 4666688888765 678899999999999765543
No 121
>COG3892 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.62 E-value=57 Score=29.71 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCcccCCC
Q psy5082 227 DNVEFLLEAIGQLYLNGLEPDVNAIYPK 254 (358)
Q Consensus 227 ~~~~~l~~~la~L~~~G~~vdw~~~~~~ 254 (358)
.+.....+++..+|..|+-+||+++-|-
T Consensus 182 ~dd~t~~Raier~Y~lGv~PDWWKLePl 209 (310)
T COG3892 182 SDDRTVPRAIERFYNLGVYPDWWKLEPL 209 (310)
T ss_pred cchhHHHHHHHHHHHcCCCcccccCCCC
Confidence 5567889999999999999999999653
No 122
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=27.87 E-value=49 Score=31.70 Aligned_cols=31 Identities=35% Similarity=0.478 Sum_probs=23.6
Q ss_pred HHHHHHHHHH--cCCCCCcccccCHHHHHHHHH
Q psy5082 95 QIGLVDLLYE--MGIKPDGLIGHSVGELGCAYA 125 (358)
Q Consensus 95 q~al~~ll~~--~Gi~P~~viGhS~GE~aAa~~ 125 (358)
...|++.|.+ .|-+|-.++|||+|..+.-+|
T Consensus 205 G~~LA~~L~~~~~G~RpVtLvG~SLGarvI~~c 237 (345)
T PF05277_consen 205 GKVLADALLSRNQGERPVTLVGHSLGARVIYYC 237 (345)
T ss_pred HHHHHHHHHHhcCCCCceEEEeecccHHHHHHH
Confidence 3556677754 599999999999997766554
No 123
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=27.31 E-value=62 Score=31.41 Aligned_cols=29 Identities=14% Similarity=-0.008 Sum_probs=22.1
Q ss_pred HHHHHHHHcCCCCCcccccCHHHHHHHHH
Q psy5082 97 GLVDLLYEMGIKPDGLIGHSVGELGCAYA 125 (358)
Q Consensus 97 al~~ll~~~Gi~P~~viGhS~GE~aAa~~ 125 (358)
-+..++..+++++..++|||+|-..|...
T Consensus 186 ~l~~~i~~l~~~~~~LvG~s~GG~ia~~~ 214 (383)
T PLN03084 186 SLESLIDELKSDKVSLVVQGYFSPPVVKY 214 (383)
T ss_pred HHHHHHHHhCCCCceEEEECHHHHHHHHH
Confidence 34567788899999999999996655433
No 124
>KOG2214|consensus
Probab=27.06 E-value=71 Score=32.04 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHhccCCH
Q psy5082 92 ACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTA 131 (358)
Q Consensus 92 ~a~q~al~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ls~ 131 (358)
-++-++..+.|-..++-|..+.|.|.|.+.|+.++ +.+-
T Consensus 186 GlfH~GVlrtL~e~dLlP~IIsGsS~GaivAsl~~-v~~~ 224 (543)
T KOG2214|consen 186 GLFHIGVLRTLLEQDLLPNIISGSSAGAIVASLVG-VRSN 224 (543)
T ss_pred hhhHHHHHHHHHHccccchhhcCCchhHHHHHHHh-hcch
Confidence 34567888999999999999999999999887654 4443
No 125
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=27.02 E-value=85 Score=25.61 Aligned_cols=21 Identities=24% Similarity=0.132 Sum_probs=14.8
Q ss_pred CCCCCcccccCHHHHHHHHHh
Q psy5082 106 GIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 106 Gi~P~~viGhS~GE~aAa~~a 126 (358)
.-..-.++|||+|--.|..++
T Consensus 26 p~~~i~v~GHSlGg~lA~l~a 46 (153)
T cd00741 26 PDYKIHVTGHSLGGALAGLAG 46 (153)
T ss_pred CCCeEEEEEcCHHHHHHHHHH
Confidence 334446899999987776654
No 126
>KOG2968|consensus
Probab=26.92 E-value=1.2e+02 Score=32.81 Aligned_cols=40 Identities=28% Similarity=0.306 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHcCCCCCcccccCHHHHHHHHHhccCCH
Q psy5082 92 ACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTA 131 (358)
Q Consensus 92 ~a~q~al~~ll~~~Gi~P~~viGhS~GE~aAa~~aG~ls~ 131 (358)
-+.++++-+.|++.||..|+|-|-|+|.+..+..|-.-+.
T Consensus 851 G~ahiGvl~ALeE~GIPvD~VGGTSIGafiGaLYA~e~d~ 890 (1158)
T KOG2968|consen 851 GAAHIGVLQALEEAGIPVDMVGGTSIGAFIGALYAEERDL 890 (1158)
T ss_pred hhhHHHHHHHHHHcCCCeeeeccccHHHhhhhhhhccCcc
Confidence 4668889999999999999999999999887766654443
No 127
>PRK11460 putative hydrolase; Provisional
Probab=26.86 E-value=1e+02 Score=27.34 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=18.2
Q ss_pred HHHcCCCCC--cccccCHHHHHHHHH
Q psy5082 102 LYEMGIKPD--GLIGHSVGELGCAYA 125 (358)
Q Consensus 102 l~~~Gi~P~--~viGhS~GE~aAa~~ 125 (358)
....|+.++ .++|+|+|-..|+.+
T Consensus 95 ~~~~~~~~~~i~l~GfS~Gg~~al~~ 120 (232)
T PRK11460 95 QQQSGVGASATALIGFSQGAIMALEA 120 (232)
T ss_pred HHhcCCChhhEEEEEECHHHHHHHHH
Confidence 345688765 789999998888654
No 128
>KOG4409|consensus
Probab=26.71 E-value=56 Score=31.23 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=21.3
Q ss_pred HHHHH-cCCCCCcccccCHHHHHHHHHh
Q psy5082 100 DLLYE-MGIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 100 ~ll~~-~Gi~P~~viGhS~GE~aAa~~a 126 (358)
+.|+. .|+.==.++|||+|-|.|+..|
T Consensus 151 E~WR~~~~L~KmilvGHSfGGYLaa~YA 178 (365)
T KOG4409|consen 151 EQWRKKMGLEKMILVGHSFGGYLAAKYA 178 (365)
T ss_pred HHHHHHcCCcceeEeeccchHHHHHHHH
Confidence 56654 7888778999999999887654
No 129
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.12 E-value=67 Score=29.08 Aligned_cols=15 Identities=40% Similarity=0.669 Sum_probs=12.4
Q ss_pred CCCcccccCHHHHHH
Q psy5082 108 KPDGLIGHSVGELGC 122 (358)
Q Consensus 108 ~P~~viGhS~GE~aA 122 (358)
+|=++.|||||-+.|
T Consensus 74 ~P~alfGHSmGa~lA 88 (244)
T COG3208 74 APFALFGHSMGAMLA 88 (244)
T ss_pred CCeeecccchhHHHH
Confidence 577999999997655
No 130
>PLN02442 S-formylglutathione hydrolase
Probab=25.41 E-value=62 Score=29.76 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=19.1
Q ss_pred HHHHcCCCCCcccccCHHHHHHHHHh
Q psy5082 101 LLYEMGIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 101 ll~~~Gi~P~~viGhS~GE~aAa~~a 126 (358)
.+...+.+.-+++|||+|-+.|+.++
T Consensus 136 ~~~~~~~~~~~i~G~S~GG~~a~~~a 161 (283)
T PLN02442 136 NFDQLDTSRASIFGHSMGGHGALTIY 161 (283)
T ss_pred HHHhcCCCceEEEEEChhHHHHHHHH
Confidence 34445667778999999998876554
No 131
>PRK10566 esterase; Provisional
Probab=25.20 E-value=70 Score=28.21 Aligned_cols=18 Identities=17% Similarity=0.030 Sum_probs=14.7
Q ss_pred CCcccccCHHHHHHHHHh
Q psy5082 109 PDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 109 P~~viGhS~GE~aAa~~a 126 (358)
.-.++|||+|-+.|+.++
T Consensus 108 ~i~v~G~S~Gg~~al~~~ 125 (249)
T PRK10566 108 RLAVGGASMGGMTALGIM 125 (249)
T ss_pred ceeEEeecccHHHHHHHH
Confidence 457899999999887654
No 132
>PRK05855 short chain dehydrogenase; Validated
Probab=25.06 E-value=80 Score=31.84 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=21.0
Q ss_pred HHHHHHHcCCC-CCcccccCHHHHHHHHHh
Q psy5082 98 LVDLLYEMGIK-PDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 98 l~~ll~~~Gi~-P~~viGhS~GE~aAa~~a 126 (358)
+..+++.+|+. |-.++|||+|-+.+..++
T Consensus 83 l~~~i~~l~~~~~~~lvGhS~Gg~~a~~~a 112 (582)
T PRK05855 83 FAAVIDAVSPDRPVHLLAHDWGSIQGWEAV 112 (582)
T ss_pred HHHHHHHhCCCCcEEEEecChHHHHHHHHH
Confidence 44556667764 578999999998775444
No 133
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
Probab=24.78 E-value=2e+02 Score=27.44 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=27.7
Q ss_pred CCCcccccCHHHHHHHHHhc-------cCCHHhHHHHHHHHh
Q psy5082 108 KPDGLIGHSVGELGCAYADG-------ALTAEQVIYAAFARG 142 (358)
Q Consensus 108 ~P~~viGhS~GE~aAa~~aG-------~ls~~da~~l~~~r~ 142 (358)
.+|.++|-|.|-+.|+.++- .++.+|.+.+-..++
T Consensus 43 ~FDliaGTStGgiiA~~la~~~~~~~p~~~~~e~~~~y~~~~ 84 (349)
T cd07214 43 YFDVIAGTSTGGLITAMLTAPNENKRPLFAAKDIVQFYLENG 84 (349)
T ss_pred hCCEEeeCCHHHHHHHHHhcCCCCCCCccCHHHHHHHHHHhh
Confidence 47999999999988887764 378888888765554
No 134
>PF09863 DUF2090: Uncharacterized protein conserved in bacteria (DUF2090); InterPro: IPR018659 This domain, found in various prokaryotic carbohydrate kinases, has no known function.
Probab=24.76 E-value=75 Score=29.74 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCcccCC
Q psy5082 227 DNVEFLLEAIGQLYLNGLEPDVNAIYP 253 (358)
Q Consensus 227 ~~~~~l~~~la~L~~~G~~vdw~~~~~ 253 (358)
.+...+.+++..+|..|+.+||+++-|
T Consensus 191 ~~~~~~~~ai~r~Y~lGI~PDWWKLep 217 (311)
T PF09863_consen 191 VDDDTYARAIERFYNLGIKPDWWKLEP 217 (311)
T ss_pred CChHHHHHHHHHHHHcCCCCCeeccCC
Confidence 457789999999999999999998853
No 135
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=24.73 E-value=50 Score=30.82 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=15.2
Q ss_pred CCCcccccCHHHHHHHHHh
Q psy5082 108 KPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 108 ~P~~viGhS~GE~aAa~~a 126 (358)
.|-.++|||+|-..|+.++
T Consensus 134 ~~i~l~GhSmGG~ia~~~a 152 (330)
T PLN02298 134 LPRFLYGESMGGAICLLIH 152 (330)
T ss_pred CCEEEEEecchhHHHHHHH
Confidence 3679999999998886554
No 136
>KOG2564|consensus
Probab=24.19 E-value=42 Score=31.17 Aligned_cols=21 Identities=24% Similarity=0.101 Sum_probs=16.2
Q ss_pred CCCCCcccccCHHHHHHHHHh
Q psy5082 106 GIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 106 Gi~P~~viGhS~GE~aAa~~a 126 (358)
-+.|-.++|||+|--.|++.+
T Consensus 144 ~~~~iilVGHSmGGaIav~~a 164 (343)
T KOG2564|consen 144 LPPQIILVGHSMGGAIAVHTA 164 (343)
T ss_pred CCCceEEEeccccchhhhhhh
Confidence 356667899999987777665
No 137
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=23.56 E-value=42 Score=30.74 Aligned_cols=20 Identities=30% Similarity=0.120 Sum_probs=14.7
Q ss_pred CCCCcccccCHHHHHHHHHh
Q psy5082 107 IKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 107 i~P~~viGhS~GE~aAa~~a 126 (358)
-.+-.++|||+|.|.+.-+.
T Consensus 83 ~~~liLiGHSIGayi~levl 102 (266)
T PF10230_consen 83 NVKLILIGHSIGAYIALEVL 102 (266)
T ss_pred CCcEEEEeCcHHHHHHHHHH
Confidence 34456899999999876443
No 138
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=23.51 E-value=1.1e+02 Score=28.92 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=27.6
Q ss_pred CCCcccccCHHHHHHHHHhc-------cCCHHhHHHHHHHHhh
Q psy5082 108 KPDGLIGHSVGELGCAYADG-------ALTAEQVIYAAFARGK 143 (358)
Q Consensus 108 ~P~~viGhS~GE~aAa~~aG-------~ls~~da~~l~~~r~~ 143 (358)
..|.+.|-|.|-+.|+..+. .++.++++.+-..++.
T Consensus 40 ~fDli~GTStGgiia~~l~~~~~~g~~~~s~~e~~~~y~~~~~ 82 (329)
T cd07215 40 YFDLVAGTSTGGILTCLYLCPNESGRPKFSAKEALNFYLERGN 82 (329)
T ss_pred ccCeeeccCHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHhhH
Confidence 36899999999998887543 4788998887655543
No 139
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=22.99 E-value=69 Score=37.51 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=24.2
Q ss_pred HHHHHHHcCCCCCcccccCHHHHHHHHHh
Q psy5082 98 LVDLLYEMGIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 98 l~~ll~~~Gi~P~~viGhS~GE~aAa~~a 126 (358)
+..+++.+++++-.++|||+|-+.|...+
T Consensus 1435 l~~ll~~l~~~~v~LvGhSmGG~iAl~~A 1463 (1655)
T PLN02980 1435 LYKLIEHITPGKVTLVGYSMGARIALYMA 1463 (1655)
T ss_pred HHHHHHHhCCCCEEEEEECHHHHHHHHHH
Confidence 45567778999999999999999887765
No 140
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=22.85 E-value=80 Score=27.61 Aligned_cols=27 Identities=33% Similarity=0.325 Sum_probs=18.0
Q ss_pred HHHHHHcCCCCCcccccCHHHHHHHHHh
Q psy5082 99 VDLLYEMGIKPDGLIGHSVGELGCAYAD 126 (358)
Q Consensus 99 ~~ll~~~Gi~P~~viGhS~GE~aAa~~a 126 (358)
.+.+++.|- .|.|+|.|.|...|+.++
T Consensus 94 ~~~i~~~GP-fdGvlGFSQGA~lAa~ll 120 (212)
T PF03959_consen 94 RDYIEENGP-FDGVLGFSQGAALAALLL 120 (212)
T ss_dssp HHHHHHH----SEEEEETHHHHHHHHHH
T ss_pred HHHHHhcCC-eEEEEeecHHHHHHHHHH
Confidence 455666664 799999999987776543
No 141
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=22.77 E-value=79 Score=28.83 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=19.6
Q ss_pred HHHHH-cCC--CCCcccccCHHHHHHHHHhc
Q psy5082 100 DLLYE-MGI--KPDGLIGHSVGELGCAYADG 127 (358)
Q Consensus 100 ~ll~~-~Gi--~P~~viGhS~GE~aAa~~aG 127 (358)
.++.+ +++ +.-.++|||+|-+.|+.++-
T Consensus 127 ~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~ 157 (275)
T TIGR02821 127 ALVAAQFPLDGERQGITGHSMGGHGALVIAL 157 (275)
T ss_pred HHHHhhCCCCCCceEEEEEChhHHHHHHHHH
Confidence 34444 455 45678999999998877653
No 142
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=21.12 E-value=1.4e+02 Score=28.36 Aligned_cols=32 Identities=34% Similarity=0.616 Sum_probs=20.7
Q ss_pred HHHHHcCCCCCc--ccccCHHHHHHHHHhccCCH
Q psy5082 100 DLLYEMGIKPDG--LIGHSVGELGCAYADGALTA 131 (358)
Q Consensus 100 ~ll~~~Gi~P~~--viGhS~GE~aAa~~aG~ls~ 131 (358)
.+....|+.++- +||||+|.=+|.+++-.+.-
T Consensus 140 ~L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~ 173 (331)
T PF00151_consen 140 FLINNFGVPPENIHLIGHSLGAHVAGFAGKYLKG 173 (331)
T ss_dssp HHHHHH---GGGEEEEEETCHHHHHHHHHHHTTT
T ss_pred HHHhhcCCChhHEEEEeeccchhhhhhhhhhccC
Confidence 333467898886 69999999888877755533
No 143
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=20.98 E-value=83 Score=28.72 Aligned_cols=30 Identities=33% Similarity=0.356 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCCCCcccccCHHHHHHHHH
Q psy5082 96 IGLVDLLYEMGIKPDGLIGHSVGELGCAYA 125 (358)
Q Consensus 96 ~al~~ll~~~Gi~P~~viGhS~GE~aAa~~ 125 (358)
-+|..|=+.++++=--++|||+|-+++.+.
T Consensus 91 ~vl~~L~~~Y~~~~~N~VGHSmGg~~~~~y 120 (255)
T PF06028_consen 91 KVLKYLKKKYHFKKFNLVGHSMGGLSWTYY 120 (255)
T ss_dssp HHHHHHHHCC--SEEEEEEETHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEeEEEECccHHHHHHH
Confidence 344444566899999999999998877553
No 144
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=20.86 E-value=61 Score=25.55 Aligned_cols=22 Identities=32% Similarity=0.211 Sum_probs=18.1
Q ss_pred CCCCCcccccCHHHHHHHHHhc
Q psy5082 106 GIKPDGLIGHSVGELGCAYADG 127 (358)
Q Consensus 106 Gi~P~~viGhS~GE~aAa~~aG 127 (358)
...+-.++|||+|-..++.++.
T Consensus 59 ~~~~i~l~G~S~Gg~~a~~~~~ 80 (145)
T PF12695_consen 59 DPDRIILIGHSMGGAIAANLAA 80 (145)
T ss_dssp TCCEEEEEEETHHHHHHHHHHH
T ss_pred CCCcEEEEEEccCcHHHHHHhh
Confidence 6677789999999998877665
No 145
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=20.83 E-value=1.2e+02 Score=26.25 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=18.1
Q ss_pred HHHcCCCCC--cccccCHHHHHHHHHh
Q psy5082 102 LYEMGIKPD--GLIGHSVGELGCAYAD 126 (358)
Q Consensus 102 l~~~Gi~P~--~viGhS~GE~aAa~~a 126 (358)
....++.++ .++|||+|-+.|..++
T Consensus 87 ~~~~~id~~~i~l~G~S~Gg~~a~~~a 113 (212)
T TIGR01840 87 KANYSIDPNRVYVTGLSAGGGMTAVLG 113 (212)
T ss_pred HHhcCcChhheEEEEECHHHHHHHHHH
Confidence 345677654 6899999998776654
No 146
>PLN03219 uncharacterized protein; Provisional
Probab=20.44 E-value=1.4e+02 Score=23.29 Aligned_cols=42 Identities=7% Similarity=0.169 Sum_probs=26.2
Q ss_pred CCCEEEEeCCCCcc--hHHHHHHHhccHHHHHHHHHHHHHHhhCCCC
Q psy5082 23 NRPVWLLFSGMGSQ--WQAMGKDLMKFPVFARAVAKCDSVLKENNVD 67 (358)
Q Consensus 23 ~~~v~fvF~Gqg~~--~~~m~~~L~~~p~f~~~~~~~~~~l~~~g~~ 67 (358)
+..-.-|+-|++.. ..-.-..++.+|.|++.++++.+-+ |++
T Consensus 40 pkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEf---Gf~ 83 (108)
T PLN03219 40 PKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEEC---GFH 83 (108)
T ss_pred CCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHh---CCC
Confidence 34456667777422 1112223445899999999998877 654
Done!