RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5082
(358 letters)
>gnl|CDD|214838 smart00827, PKS_AT, Acyl transferase domain in polyketide synthase
(PKS) enzymes.
Length = 298
Score = 128 bits (325), Expect = 1e-34
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 29 LFSGMGSQWQAMGKDLMK-FPVFARAVAKCDSVLKEN-NVDIMNILTNEEDKTIFDNILN 86
+F+G GSQW MG++L + PVF A+ +CD+ L+ ++++L E+ +
Sbjct: 1 VFTGQGSQWAGMGRELYETEPVFREALDECDAALQPLLGWSLLDVLLGEDGAASLLDTEV 60
Query: 87 SFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASK 146
+ + VQ+ L LL G++PD ++GHS GE+ AY G L+ E ARG+ +
Sbjct: 61 AQPALFAVQVALARLLRSWGVRPDAVVGHSSGEIAAAYVAGVLSLEDAARLVAARGRLMQ 120
Query: 147 EIDLIKGMMAAVG 159
+ G M AVG
Sbjct: 121 ALPG-GGAMLAVG 132
>gnl|CDD|144338 pfam00698, Acyl_transf_1, Acyl transferase domain.
Length = 319
Score = 120 bits (304), Expect = 1e-31
Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 4/135 (2%)
Query: 27 WLLFSGMGSQWQAMGKDLMK-FPVFARAVAKCDSVLKEN-NVDIMNILTNEEDKTIFDNI 84
+FSG GSQW MG DL+K PVFA A+A+CD K ++++L N + + +
Sbjct: 1 VFVFSGQGSQWAGMGMDLLKTSPVFAAAIARCDEAFKPQYGFSVLDVLRNNPEGL-LERV 59
Query: 85 LNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKA 144
+ +QI L LL G+ P ++GHS+GE+ A GAL+ E+ R +
Sbjct: 60 DVVQPALFAMQIALAALLRSYGVTPAAVVGHSLGEIAAAVVAGALSLEEAALVVALRSRL 119
Query: 145 SKEIDLIKGMMAAVG 159
+++ G MAAVG
Sbjct: 120 MRQLAG-PGGMAAVG 133
Score = 34.7 bits (80), Expect = 0.062
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 171 ERNLGRYVYLEEGAQHI--PPNAIVIEIAPHGLLQPIVK---KSLGPETINIALTNRSSS 225
RNL V E + +E++PH +L V+ KS + + T
Sbjct: 240 YRNLRNPVRFAEAVLAAAEQGYLVFVEVSPHPVLLAAVEETLKSADGKDATLVGTLI-RD 298
Query: 226 VDNVEFLLEAIGQLYLNGLEP 246
++ L A+ +L G+
Sbjct: 299 QGDLVTFLYALAVAHLTGVAV 319
>gnl|CDD|223408 COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid
metabolism].
Length = 310
Score = 76.6 bits (189), Expect = 1e-15
Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 29 LFSGMGSQWQAMGKDLMK-FPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNS 87
+F G GSQ MGKDL + P + D L D+ ++ ++ + + N+
Sbjct: 7 VFPGQGSQSLGMGKDLYENSPEAKETFDEADEALG---FDLWALVFEGPEEEL-NLTQNT 62
Query: 88 FVGIACVQIGLVDLLYE--MGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKAS 145
+ V + +L E +G+KPD + GHS+GE A G L+ E + RGK
Sbjct: 63 QPALLLVSLAAYRVLAEQGLGVKPDFVAGHSLGEYSALAAAGVLSFEDALKLVRKRGKLM 122
Query: 146 KEIDLI-KGMMAAVG 159
+E +G MAAV
Sbjct: 123 QEAVPRGEGGMAAVL 137
>gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 1061
Score = 78.3 bits (193), Expect = 1e-15
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 4/154 (2%)
Query: 7 EHKNKKIQQAKQYGSNNRPVWLLFSGMGSQWQAMGKDLMK-FPVFARAVAKCDSVLKENN 65
K + + +F G GSQW MG++L PVFA A +++L
Sbjct: 508 AAGKAKALSGVGADDSGKKTVFVFPGQGSQWAGMGRELYALEPVFASAFDALEALLHRLL 567
Query: 66 -VDIMNILTNEEDKTIFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAY 124
+ ++ + ++I + + V + L L G+ P +IGHS+GEL A
Sbjct: 568 GFSLPEVIFAPDY-PFLESIDFAQPALFAVSVALAALWRSWGVIPGAVIGHSLGELAAAV 626
Query: 125 ADGALTAEQVIYAAFARGKASKEIDLIKGMMAAV 158
A G L+ E + RG+ +++ +G M AV
Sbjct: 627 AAGVLSLEDALRVVATRGRLMQQLAG-EGAMLAV 659
Score = 33.6 bits (77), Expect = 0.19
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 168 FHKERNLGRYVYLEEGAQHIPPNA--IVIEIAPHGLLQPIVKKSLGPETINIALTNRSSS 225
+ ++L + V + + IE+ P +L +K++L ++IA R
Sbjct: 766 QYWVQHLRQPVRFADAIAAALADGARTFIEVGPGPVLTESIKQTLRDAILSIATLRR--D 823
Query: 226 VDNVEFLLEAIGQLYLNGLEPDVNAIYPKID--YPIPPNVP 264
+ L A+ QL++ G+ D + + D P P
Sbjct: 824 APELLSFLAALAQLFVAGVAVDWSPLVYGPDGRLVELPTYP 864
>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are
encoded near genes for homologs of PfaB, PfaC, and/or
PfaD.
Length = 2582
Score = 69.3 bits (169), Expect = 1e-12
Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 17/145 (11%)
Query: 29 LFSGMGSQWQAMGKDLM-KFPVFARAVAKCDSVLKENN----------VDIMNILTNEED 77
LF+G GSQ+ MG++L FP +A A DSV + + + N + +
Sbjct: 584 LFAGQGSQYLNMGRELACNFPEVRQAAADMDSVFTQAGKGALSPVLYPIPVFNDESRKAQ 643
Query: 78 KTIFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYA 137
+ N ++ I + +G L + G K D GHS GEL A G ++ + +
Sbjct: 644 EEALTNTQHAQSAIGTLSMGQYKLFTQAGFKADMTAGHSFGELSALCAAGVISDDDYMML 703
Query: 138 AFARGKA----SKEIDLIKGMMAAV 158
AF+RG+A + E D+ G M AV
Sbjct: 704 AFSRGQAMAAPTGEADI--GFMYAV 726
>gnl|CDD|232839 TIGR00128, fabD, malonyl CoA-acyl carrier protein transacylase.
This enzyme of fatty acid biosynthesis transfers the
malonyl moeity from coenzyme A to acyl-carrier protein.
The seed alignment for this family of proteins contains
a single member each from a number of bacterial species
but also an additional pair of closely related,
uncharacterized proteins from B. subtilis, one of which
has a long C-terminal extension [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 290
Score = 54.0 bits (130), Expect = 3e-08
Identities = 41/134 (30%), Positives = 55/134 (41%), Gaps = 7/134 (5%)
Query: 28 LLFSGMGSQWQAMGKDLM-KFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILN 86
+F G GSQ MGKDL ++P+ + L D+ L E +
Sbjct: 5 YVFPGQGSQTVGMGKDLYEQYPIAKELFDQASEALG---YDLKK-LCQEGPAEELNKTQY 60
Query: 87 SFVGIACVQIGLVDLLYEMG-IKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKAS 145
+ + V L L E G +KPD GHS+GE A GAL E + RG+
Sbjct: 61 TQPALYVVSAILYLKLKEQGGLKPDFAAGHSLGEYSALVAAGALDFETALKLVKKRGELM 120
Query: 146 KEIDLIK-GMMAAV 158
+E G MAAV
Sbjct: 121 QEAVPEGGGAMAAV 134
>gnl|CDD|132175 TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit.
Members of this protein family are the epsilon subunit
of malonate decarboxylase. This subunit has
malonyl-CoA/dephospho-CoA acyltransferase activity.
Malonate decarboxylase may be a soluble enzyme, or
linked to membrane subunits and active as a sodium pump.
The epsilon subunit is closely related to the malonyl
CoA-acyl carrier protein (ACP) transacylase family
described by TIGR00128, but acts on an ACP subunit of
malonate decarboxylase that has an unusual coenzyme A
derivative as its prothetic group.
Length = 295
Score = 50.0 bits (120), Expect = 5e-07
Identities = 33/134 (24%), Positives = 50/134 (37%), Gaps = 10/134 (7%)
Query: 28 LLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDN-ILN 86
LLF G GSQ M +L P A +A+ VL +D + E +
Sbjct: 3 LLFPGQGSQRAGMLAELPDHPAVAAVLAEASDVL---GIDPRELDDAEA---LASTRSAQ 56
Query: 87 SFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASK 146
+ A + L + +P + G+SVGE A G LT + + R
Sbjct: 57 LCILAA--GVAAWRALLALLPRPSAVAGYSVGEYAAAVVAGVLTFDDALRLVALRAALMD 114
Query: 147 EI-DLIKGMMAAVG 159
+ GM+A +G
Sbjct: 115 QAVPGGYGMLAVLG 128
>gnl|CDD|132848 cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to
Z1214 protein of Escherichia coli. Patatin-like
phospholipase similar to Z1214 protein of Escherichia
coli. This family predominantly consists of bacterial
patatin glycoproteins and some representatives from
eukaryotes and archaea. The patatin protein accounts for
up to 40% of the total soluble protein in potato tubers.
Patatin is a storage protein, but it also has the
enzymatic activity of a lipid acyl hydrolase, catalyzing
the cleavage of fatty acids from membrane lipids.
Members of this family have also been found in
vertebrates.
Length = 215
Score = 36.9 bits (86), Expect = 0.009
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 20/113 (17%)
Query: 95 QIGLVDLLYEMGIKPDGLIGHSVGEL-GCAYADGA-------------LTAEQVIYAAFA 140
Q G++ L E GI+PD + G S+G + G A G L+ E V F
Sbjct: 13 QAGVLKALAEAGIEPDIISGTSIGAINGALIAGGDPEAVERLEKLWRELSREDV----FL 68
Query: 141 RGKASKEIDLIKGMMAAVGKSQIHNILFHKERNLGRYVYLEEGAQHIPPNAIV 193
RG + +D + A+ + + + + G VY ++ I P ++
Sbjct: 69 RGLLDRALDFDTLRLLAILFAGLVIVAVNVLT--GEPVYFDDIPDGILPEHLL 119
>gnl|CDD|182352 PRK10279, PRK10279, hypothetical protein; Provisional.
Length = 300
Score = 35.5 bits (82), Expect = 0.036
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 96 IGLVDLLYEMGIKPDGLIGHSVGEL-GCAYADGALTA 131
IG+++ L ++GI+ D + G S+G L G AYA L+A
Sbjct: 21 IGVINALKKVGIEIDIVAGCSIGSLVGAAYACDRLSA 57
>gnl|CDD|132844 cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase
domain containing protein 6, protein 7, and fungal NTE1.
Patatin-like phospholipase domain containing protein 6
(PNPLA6) and protein 7 (PNPLA7) are included in this
family. PNPLA6 is commonly known as Neuropathy Target
Esterase (NTE). NTE has at least two functional domains:
the N-terminal domain putatively regulatory domain and
the C-terminal catalytic domain which shows esterase
activity. NTE shows phospholipase activity for
lysophosphatidylcholine (LPC) and phosphatidylcholine
(PC). Exposure of NTE to organophosphates leads to
organophosphate-induced delayed neurotoxicity (OPIDN).
OPIDN is a progressive neurological condition that is
characterized by weakness, paralysis, pain, and
paresthesia. PNPLA7 is an insulin-regulated
phospholipase that is homologus to Neuropathy Target
Esterase (NTE or PNPLA6) and is also known as
NTE-related esterase (NRE). Human NRE is predominantly
expressed in prostate, white adipose, and pancreatic
tissue. NRE hydrolyzes sn-1 esters in
lysophosphatidylcholine and lysophosphatidic acid, but
shows no lipase activity with substrates like
triacylglycerols (TG), cholesteryl esters, retinyl
esters (RE), phosphatidylcholine (PC), or
monoacylglycerol (MG). This family includes subfamily of
PNPLA6 (NTE) and PNPLA7 (NRE)-like phospholipases.
Length = 175
Score = 32.5 bits (75), Expect = 0.19
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 90 GIACVQIGLVDLLYEMGIKPDGLIGHSVGEL-GCAYADGALTAEQVIYAAFAR 141
G+A IG++ L E GI D + G S G + G YA G E I
Sbjct: 12 GLA--HIGVLKALEEAGIPIDIVSGTSAGAIVGALYAAGYSPEE--IEERAKL 60
>gnl|CDD|132866 cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like
phospholipase domain containing protein 6. Bacterial
patatin-like phospholipase domain containing protein 6.
PNPLA6 is commonly known as Neuropathy Target Esterase
(NTE). NTE has at least two functional domains: the
N-terminal domain putatively regulatory domain and the
C-terminal catalytic domain which shows esterase
activity. NTE shows phospholipase activity for
lysophosphatidylcholine (LPC) and phosphatidylcholine
(PC). Exposure of NTE to organophosphates leads to
organophosphate-induced delayed neurotoxicity (OPIDN).
OPIDN is a progressive neurological condition that is
characterized by weakness, paralysis, pain, and
paresthesia. This group includes YCHK and rssA from
Escherichia coli as well as Ylbk from Bacillus
amyloliquefaciens.
Length = 175
Score = 30.3 bits (69), Expect = 0.87
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 96 IGLVDLLYEMGIKPDGLIGHSVGEL-GCAYADGALTAE 132
IG++ L E GI+ D + G S+G L G YA G L A
Sbjct: 16 IGVLRALEEEGIEIDIIAGSSIGALVGALYAAGHLDAL 53
>gnl|CDD|129605 TIGR00514, accC, acetyl-CoA carboxylase, biotin carboxylase
subunit. This model represents the biotin carboxylase
subunit found usually as a component of acetyl-CoA
carboxylase. Acetyl-CoA carboxylase is designated EC
6.4.1.2 and this component, biotin carboxylase, has its
own designation, EC 6.3.4.14. Homologous domains are
found in eukaryotic forms of acetyl-CoA carboxylase and
in a number of other carboxylases (e.g. pyruvate
carboxylase), but seed members and trusted cutoff are
selected so as to exclude these. In some systems, the
biotin carboxyl carrier protein and this protein (biotin
carboxylase) may be shared by different
carboxyltransferases. However, this model is not
intended to identify the biotin carboxylase domain of
propionyl-coA carboxylase. The model should hit the full
length of proteins, except for chloroplast transit
peptides in plants. If it hits a domain only of a longer
protein, there may be a problem with the identification
[Fatty acid and phospholipid metabolism, Biosynthesis].
Length = 449
Score = 30.9 bits (70), Expect = 1.0
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 173 NLGRYVYLEEGAQHIPP-NAIVIEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDNVEF 231
G +YL E I + ++E AP L P +++ +G + A++ VEF
Sbjct: 217 KYGNAIYLGERDCSIQRRHQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEF 276
Query: 232 LLEAIGQLY 240
LL+ G+ Y
Sbjct: 277 LLDKNGEFY 285
>gnl|CDD|99909 cd05567, PTS_IIB_mannitol, PTS_IIB_mannitol: subunit IIB of enzyme
II (EII) of the mannitol-specific
phosphoenolpyruvate:carbohydrate phosphotransferase
system (PTS). In this system, EII is a mannitol-specific
permease with two cytoplasmic domains (IIA and IIB) and
a transmembrane channel IIC domain. The IIA, IIB, and
IIC domains are expressed from the mtlA gene as a single
protein, also known as the mannitol PTS permease, the
mtl transporter, or MtlA. MtlA is only functional as a
dimer with the dimer contacts occuring between the IIC
domains. MtlA takes up exogenous mannitol releasing the
phosphate ester into the cytoplasm in preparation for
oxidation to fructose-6-phosphate by the NAD-dependent
mannitol-P dehydrogenase (MtlD). The IIB domain fold
includes a central four-stranded parallel open twisted
beta-sheet flanked by alpha-helices on both sides. The
seven major PTS systems with this IIB fold include
mannitol, chitobiose/lichenan, ascorbate, lactose,
galactitol, fructose, and a sensory system with
similarity to the bacterial bgl system.
Length = 87
Score = 28.3 bits (64), Expect = 1.5
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 327 LLDFYLKKNPNAKHVTIENF-RTYEYDE 353
L D KK P A+H++++NF T EYDE
Sbjct: 55 LTDRAKKKAPQAQHLSVDNFLNTPEYDE 82
>gnl|CDD|224666 COG1752, RssA, Predicted esterase of the alpha-beta hydrolase
superfamily [General function prediction only].
Length = 306
Score = 30.1 bits (68), Expect = 1.5
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 90 GIACVQIGLVDLLYEMGIKPDGLIGHSVGEL-GCAYADGALTAEQVIYAAFARGKASKEI 148
G A IG++ L E GI D + G S G + YA G E + A +
Sbjct: 23 GAA--HIGVLKALEEAGIPIDVIAGTSAGAIVAALYAAGMDEDELELAAQRLTARWDNAR 80
Query: 149 DLIKGMMAAVGKSQIHNILFH 169
DL++ + + + +L
Sbjct: 81 DLLRLLDLTLPGGRPLGLLRG 101
>gnl|CDD|234622 PRK00085, recO, DNA repair protein RecO; Reviewed.
Length = 247
Score = 29.5 bits (67), Expect = 2.1
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 176 RYVYLEEG----AQHIPPNAIVIEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDN--- 228
RY +EG ++ P AI + P LL+ ++ L +AL ++
Sbjct: 162 RYFSPKEGGAVCSECGDPYAIKLLPLPLFLLRLLLGGDL------LALAAADLKLETKKE 215
Query: 229 VEFLLEAIGQLYLNG 243
++ LL A + YL G
Sbjct: 216 LKRLLRAYLEPYLGG 230
>gnl|CDD|178283 PLN02679, PLN02679, hydrolase, alpha/beta fold family protein.
Length = 360
Score = 29.8 bits (67), Expect = 2.3
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 98 LVDLLYEMGIKPDGLIGHSVGELGCAYA 125
++D L E+ KP LIG+SVG L C A
Sbjct: 145 ILDFLEEVVQKPTVLIGNSVGSLACVIA 172
>gnl|CDD|215731 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain.
Length = 259
Score = 29.1 bits (66), Expect = 2.8
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 98 LVDLLYEMGIKPDGLIGHSVG----ELGCAYADGALTAEQVIYA 137
+V L GI +G+ H V E+ +AD A+ +
Sbjct: 74 IVKALEAAGIPVEGIH-HEVAPGQHEIDLRFADALEAADNLQLF 116
>gnl|CDD|173544 PTZ00351, PTZ00351, adenylosuccinate synthetase; Provisional.
Length = 710
Score = 29.2 bits (65), Expect = 4.4
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 173 NLGRYVYLEEGAQHIPPNAIVIEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDNVEFL 232
N G VY + G + V +AP GLL P + +GPE + +D V F+
Sbjct: 208 NAGHTVYDKAGRK------FVFNLAPSGLLLPGKRNYIGPECV----------MDPVSFM 251
Query: 233 LEAIGQLYLNGLE 245
+ I QL G++
Sbjct: 252 EKEIIQLIDAGID 264
>gnl|CDD|224719 COG1806, COG1806, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 273
Score = 28.4 bits (64), Expect = 5.2
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 161 SQIHNILFHKERNLGRYVYLEEGAQHIPPNAIVIEIAPHGLLQPIVKKSLGPETINIALT 220
+Q + F + + + AQ + I+ AP + IV + PE I
Sbjct: 26 AQFPGVKFKAITH--PFPDIRSKAQ-LVEVLILAAYAPGIVRPTIVDSEVRPELREICAE 82
Query: 221 NRSSSVDNVEFLLEAIGQLYLNGLEP 246
+ VD + L+ + + L GLEP
Sbjct: 83 AGAPCVDVLGPLIALL-ESEL-GLEP 106
>gnl|CDD|130318 TIGR01251, ribP_PPkin, ribose-phosphate pyrophosphokinase.
Alternate name: phosphoribosylpyrophosphate synthetase
In some systems, close homologs lacking enzymatic
activity exist and perform regulatory functions. The
model is designated subfamily rather than equivalog for
this reason [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 308
Score = 28.4 bits (64), Expect = 5.6
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 62 KENNVDIMNILTNEEDKT--IFDNILNSFVGIACVQIGLVDLLYEMGIK 108
N V++MN++ + E K I D+I+++ I ++L G K
Sbjct: 195 ATNEVEVMNLVGDVEGKDVVIVDDIIDTGGTI----AKAAEILKSAGAK 239
>gnl|CDD|235206 PRK04031, PRK04031, DNA primase; Provisional.
Length = 408
Score = 28.2 bits (64), Expect = 6.8
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 15/74 (20%)
Query: 51 ARAVAKCDSVLKENNV-DIMNILTNEEDK---TIFDNILNSFVGIACVQIGLVDLLYEMG 106
AR + + +V+KE V D+++ L EDK +FD I+ Q L+DL E G
Sbjct: 330 ARLLDENWNVIKEVPVRDLVDKLEEAEDKVYAIVFDGIIT--------Q-RLLDLASEKG 380
Query: 107 IKPDGLIGHSVGEL 120
+K LIG +G +
Sbjct: 381 VKY--LIGARIGNI 392
>gnl|CDD|223252 COG0174, GlnA, Glutamine synthetase [Amino acid transport and
metabolism].
Length = 443
Score = 28.4 bits (64), Expect = 7.5
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 98 LVDLLYEMGIKPDGLIGHSVG----ELGCAYADGALTAEQVI 135
+V+ L GI+ + + H V E+ + D A+Q++
Sbjct: 171 IVEALEAAGIEIEAIH-HEVAPGQFEINLRFDDALKAADQIV 211
>gnl|CDD|225404 COG2848, COG2848, Uncharacterized conserved protein [Function
unknown].
Length = 445
Score = 28.2 bits (63), Expect = 8.3
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 193 VIEIAPHGLLQPIVKK--SLGPETINIALTNRSSSVDNVEFL---LEAIGQLYLNGLEPD 247
E L PIV K S+ P +I A T V E L + IG ++ G
Sbjct: 58 TAEELTAELGVPIVNKRISVTPISIVAASTADDDLVSLAETLDKAAKEIGVDFIGGFSAL 117
Query: 248 VNAIYPKID 256
V+ Y K D
Sbjct: 118 VHKGYTKGD 126
>gnl|CDD|224710 COG1797, CobB, Cobyrinic acid a,c-diamide synthase [Coenzyme
metabolism].
Length = 451
Score = 28.0 bits (63), Expect = 9.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 126 DGALTAEQVIYAAFARGKASKEIDLIKGMM 155
D + E+ + A FAR A +I +I+G+M
Sbjct: 59 DSWMMGEEGVRALFARAAADADIAVIEGVM 88
>gnl|CDD|226351 COG3830, COG3830, ACT domain-containing protein [Signal
transduction mechanisms].
Length = 90
Score = 26.1 bits (58), Expect = 10.0
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 54 VAKCDSVLKENNVDIMNILTNEEDKTIFDNILN--SFVGIACVQIGLVDLLYEM 105
VA VL E+ V+I++I +T+ D V I+ + L E+
Sbjct: 17 VAAVSRVLAEHGVNILDI-----SQTVMDGFFTMIMLVDISKEVVDFAALRDEL 65
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.138 0.410
Gapped
Lambda K H
0.267 0.0893 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,674,091
Number of extensions: 1847631
Number of successful extensions: 1717
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1707
Number of HSP's successfully gapped: 37
Length of query: 358
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 260
Effective length of database: 6,590,910
Effective search space: 1713636600
Effective search space used: 1713636600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.6 bits)