RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5082
(358 letters)
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 184 bits (469), Expect = 6e-52
Identities = 61/147 (41%), Positives = 97/147 (65%), Gaps = 1/147 (0%)
Query: 13 IQQAKQYGSNNRPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNIL 72
Q+ +Q + RPVW + SGMG+QWQ MG LM+ F ++ + D LK + + ++L
Sbjct: 479 SQEVQQVPGSKRPVWFICSGMGAQWQGMGLSLMRLDRFRDSILRSDQALKPLGLRVSDLL 538
Query: 73 TNEEDKTIFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAE 132
+ ++ D+I++SFV + +QI L+DLL +G++PDG+IGHS+GE+ C YADG LT E
Sbjct: 539 LSTDEAV-LDDIVSSFVSLTSIQIALIDLLTSLGLQPDGIIGHSLGEVACGYADGCLTQE 597
Query: 133 QVIYAAFARGKASKEIDLIKGMMAAVG 159
+ + +++ RG KE +++ G MAAVG
Sbjct: 598 EAVLSSYWRGYCIKEANVLPGAMAAVG 624
Score = 88.8 bits (220), Expect = 3e-19
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 172 RNLGRYVYLEEGAQHIPPNAIVIEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDNVEF 231
NL V +E QH+P +A+V+EIAPH LLQ ++K+SL I L + DN+EF
Sbjct: 737 NNLVSPVLFQEALQHVPAHAVVVEIAPHALLQAVLKRSLESSCTIIPLMKKDHR-DNLEF 795
Query: 232 LLEAIGQLYLNGLEPDVNAIYPKIDYPIPPNVP 264
L +G+L+L G+ + N ++P +++P P P
Sbjct: 796 FLSNVGRLHLAGVSVNPNGLFPPVEFPAPRGTP 828
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 181 bits (462), Expect = 5e-51
Identities = 61/136 (44%), Positives = 93/136 (68%), Gaps = 1/136 (0%)
Query: 24 RPVWLLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDN 83
RP+W + SGMG+QW+ MG LM+ F ++ + D +K + + +L + ++ T FD+
Sbjct: 492 RPLWFICSGMGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDEST-FDD 550
Query: 84 ILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGK 143
I++SFV + +QIGL+DLL MG++PDG++GHS+GE+ C YADG L+ E+ + AA+ RG+
Sbjct: 551 IVHSFVSLTAIQIGLIDLLSCMGLRPDGIVGHSLGEVACGYADGCLSQEEAVLAAYWRGQ 610
Query: 144 ASKEIDLIKGMMAAVG 159
KE L G MAAVG
Sbjct: 611 CIKEAHLPPGAMAAVG 626
Score = 89.9 bits (224), Expect = 8e-20
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 13/165 (7%)
Query: 172 RNLGRYVYLEEGAQHIPPNAIVIEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDNVEF 231
NL V +E H+P +A+V+EIAPH LLQ ++K+ L P I L + DN+EF
Sbjct: 739 NNLVSPVLFQEALWHVPEHAVVLEIAPHALLQAVLKRGLKPSCTIIPLMKKDHR-DNLEF 797
Query: 232 LLEAIGQLYLNGLEPDVNAIYPKIDYPIPPNVPSV--------TQFLTWDFSVKSNLGLT 283
L IG+L+L+G++ + NA++P +++P P P + + WD +
Sbjct: 798 FLAGIGRLHLSGIDANPNALFPPVEFPAPRGTPLISPLIKWDHSLA--WDVPAAEDFPNG 855
Query: 284 TGARTDWWKNIVLGICSKEKYQHLLNYKIGEKFVVPVAAYIDLLL 328
+G+ + + S+ +L+++ + + + P Y+ ++
Sbjct: 856 SGSPSAAI--YNIDTSSESPDHYLVDHTLDGRVLFPATGYLSIVW 898
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 103 bits (258), Expect = 3e-24
Identities = 55/291 (18%), Positives = 92/291 (31%), Gaps = 103/291 (35%)
Query: 34 GSQWQAMGKDLMK-FPVFARAV-AKCDSVLKEN-NVDIMNILTN---------------- 74
GSQ Q MG DL K A+ V + D+ K+ I++I+ N
Sbjct: 1625 GSQEQGMGMDLYKTSKA-AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 75 -----------------EEDKTIFDNI---LNS--FVG--------------IACVQIGL 98
+ + IF I S F + ++
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 99 VDLLYEMGIKPDG--LIGHSVGE---LGCAYADGALTAEQVIYAAFARGKASK------E 147
+ L G+ P GHS+GE L + A ++ E ++ F RG + E
Sbjct: 1744 FEDLKSKGLIPADATFAGHSLGEYAAL-ASLA-DVMSIESLVEVVFYRGMTMQVAVPRDE 1801
Query: 148 IDLIKGMMAAVGKSQIHNILFHKE----------RNLGRYV----YLEEGAQHIPPNAIV 193
+ M A+ ++ F +E + G V Y E Q V
Sbjct: 1802 LGRSNYGMIAINPGRVA-ASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ------YV 1854
Query: 194 I--EIAPHGLLQPIVK--KSLGPETINIALTNRSSSVDNVEFLLEAIGQLY 240
++ L + + + I+I +S S++ VE G L+
Sbjct: 1855 AAGDLRA---LDTVTNVLNFIKLQKIDIIELQKSLSLEEVE------GHLF 1896
Score = 57.0 bits (137), Expect = 6e-09
Identities = 47/265 (17%), Positives = 85/265 (32%), Gaps = 70/265 (26%)
Query: 1 DSKPQREHKNKKIQQAKQYGSNNRPVWLLFSGMGS--QW-----------QAMGKDLMK- 46
++ + + N + +F G G+ + + DL+K
Sbjct: 134 KRPFDKKSNSALFRAVG---EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 47 ----FPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNSFVGIACVQIGLVDLL 102
R + V + ++I+ L N + D +L+ + +C IG++ L
Sbjct: 191 SAETLSELIRTTLDAEKVFTQG-LNILEWLENPSNTPDKDYLLSIPI--SCPLIGVIQLA 247
Query: 103 -YE-----MGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKEIDLIKGMMA 156
Y +G P L + G G + G +TA A A S E +
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHS--QGLVTA-----VAIAETD-SWE-SFFVSVRK 298
Query: 157 AVGKSQIHNILFHKERNLGRYVYLEEGAQHIPPNAIVIEIAPHG-------L-------- 201
A+ +LF +G Y +PP +I+ + + L
Sbjct: 299 AIT------VLFF----IGVRCYEAYPNTSLPP-SILEDSLENNEGVPSPMLSISNLTQE 347
Query: 202 -LQPIVKK---SLGPE-TINIALTN 221
+Q V K L + I+L N
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVN 372
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 89.6 bits (223), Expect = 1e-19
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 24 RPVWLLFSGMGSQWQAMGKDLMK-FPVFARAVAKCDSVLKEN-NVDIMNILTNEEDKTIF 81
V+L F G GSQW MG +L+ PVFA + CD + + + ++L
Sbjct: 533 NVVFL-FPGQGSQWAGMGAELLSSSPVFAGKIRACDESMAPMQDWKVSDVLRQAPGAPGL 591
Query: 82 DNILNSFVGIA-----CVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIY 136
D V + V + L +L G++P ++GHS GE+ A+ GALT E
Sbjct: 592 DR-----VDVVQPVLFAVMVSLAELWRSYGVEPAAVVGHSQGEIAAAHVAGALTLED--- 643
Query: 137 AA---FARGKASKEIDLIKGMMAAVG 159
AA R + + + +G MAAV
Sbjct: 644 AAKLVVGRSRLMRSLSG-EGGMAAVA 668
Score = 33.8 bits (78), Expect = 0.11
Identities = 9/65 (13%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 194 IEIAPHGLLQPIVKKSL-----GPETINIALTNRSSSVDNVEFLLEAIGQLYLNGLEPDV 248
IE++PH ++ V++++ + + + +R ++ L ++ +++G++
Sbjct: 801 IEVSPHPVVVQAVEEAVEEADGAEDAVVVGSLHRDG--GDLSAFLRSMATAHVSGVDIRW 858
Query: 249 NAIYP 253
+ P
Sbjct: 859 DVALP 863
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 84.6 bits (210), Expect = 4e-18
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 23/146 (15%)
Query: 24 RPVWLLFSGMGSQWQAMGKDLMK-FPVFARAVAKCDSVLKEN-NVDIMNILTNEEDKTIF 81
+ F G G+QWQ M +DL++ VFA ++ C+ L + + + ++L+
Sbjct: 552 GVAMV-FPGQGAQWQGMARDLLRESQVFADSIRDCERALAPHVDWSLTDLLSGARP---- 606
Query: 82 DNILNSFVGIA-----CVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIY 136
L+ V + V + L L G++P ++GHS GE+ A+ GALT E
Sbjct: 607 ---LDR-VDVVQPALFAVMVSLAALWRSHGVEPAAVVGHSQGEIAAAHVAGALTLED--- 659
Query: 137 AA---FARGKASKEIDLIKGMMAAVG 159
AA R + + + +G MA+ G
Sbjct: 660 AAKLVAVRSRVLRRLGG-QGGMASFG 684
Score = 32.6 bits (75), Expect = 0.20
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 194 IEIAPHGLLQPIVKKSL------GPETINIALTNRSSSVDNVEFLLEAIGQLYLNGLEPD 247
+E++PH +L ++ +L + R + A+G+ Y G+E D
Sbjct: 817 VEVSPHPVLTVGIEATLDSALPADAGACVVGTLRRDR--GGLADFHTALGEAYAQGVEVD 874
Query: 248 VNAIYP 253
+ +
Sbjct: 875 WSPAFA 880
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A
4amp_A 4amo_A
Length = 401
Score = 80.4 bits (199), Expect = 5e-17
Identities = 30/138 (21%), Positives = 46/138 (33%), Gaps = 27/138 (19%)
Query: 28 LLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEE-DKT------I 80
LLF G + A + D+ D + + E T I
Sbjct: 101 LLFPGQAAPVHADR------GALGHLLGDADAGTGS---DPDSGVKPAEPVDTAVAQPAI 151
Query: 81 FDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFA 140
+ + L +G +P G +GHS+GEL GAL A+ + A A
Sbjct: 152 I-----------ADSLAGIRWLDRLGARPVGALGHSLGELAALSWAGALDADDTLALARA 200
Query: 141 RGKASKEIDLIKGMMAAV 158
RG+A M ++
Sbjct: 201 RGEAMSAATEAPSGMLSL 218
Score = 32.7 bits (75), Expect = 0.20
Identities = 7/60 (11%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 194 IEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDNVEFLLEAIGQLYLNGLEPDVNAIYP 253
+E+ P +L + + + A++ + + + + L+ G D +
Sbjct: 346 VEVGPGRMLSALAEAAGRT-----AVSLDAGA-ASAAGMAAGTAALFAAGAVDDATPFFA 399
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta
hydrolase-like core; 2.00A {Streptomyces coelicolor}
SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B
Length = 317
Score = 63.0 bits (154), Expect = 3e-11
Identities = 31/142 (21%), Positives = 48/142 (33%), Gaps = 16/142 (11%)
Query: 28 LLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTN--EEDKTIFDN-- 83
L+ G G+Q D + P A VA + D+ + T ++
Sbjct: 5 LVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAIGL---DLAHFGTKADADEIRDTSVAQ 61
Query: 84 --ILNSFVGIACVQI----GLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYA 137
++ GI V G P + GHSVGE+ A G L +
Sbjct: 62 PLLVA--AGILSAAALGTQTSVADATGPGFTPGAVAGHSVGEITAAVFAGVLDDTAALSL 119
Query: 138 AFARGKASKE-IDLIKGMMAAV 158
RG A E + + M+A+
Sbjct: 120 VRRRGLAMAEAAAVTETGMSAL 141
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase,
lipid synthesis, mitochondrion transfer transferase;
HET: AE4; 1.55A {Homo sapiens}
Length = 339
Score = 60.0 bits (146), Expect = 2e-10
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 23/143 (16%)
Query: 28 LLFSGMGSQWQAMGKDLMKFPVFARAV-AKCDSVLKENNVDIMNILTNEE-DKT------ 79
LLF G GSQ MG+ L+ +P R + A VL + +++ E D+T
Sbjct: 29 LLFPGQGSQVVGMGRGLLNYPR-VRELYAAARRVLGYDLLELSLHGPQETLDRTVHCQPA 87
Query: 80 IFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGE---LGCAYADGALTAEQVIY 136
IF +A V+ L L + G SVGE L A GA+ + +Y
Sbjct: 88 IF------VASLAAVEK-LHHLQPSVIENCVAAAGFSVGEFAALVFA---GAMEFAEGLY 137
Query: 137 AAFARGKASKE-IDLIKGMMAAV 158
A R +A +E + + M +V
Sbjct: 138 AVKIRAEAMQEASEAVPSGMLSV 160
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid,
acyl-carrier-protein S-malonyltransferase,
acyltransferase, transferase; 2.05A {Burkholderia
pseudomallei 1710B}
Length = 318
Score = 59.5 bits (145), Expect = 3e-10
Identities = 31/140 (22%), Positives = 51/140 (36%), Gaps = 20/140 (14%)
Query: 28 LLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEE-DKTIFDN--- 83
+F G GSQ M V + + L ++ ++ +E + T N
Sbjct: 13 FVFPGQGSQSVGMLNAFADVAVVRETLDEASDALGQDIGKLIADGPADELNLT--TNTQP 70
Query: 84 -ILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGE---LGCAYADGALTAEQVIYAAF 139
+L AC + G +P + GHS+GE L A GA+ +
Sbjct: 71 VML--TAAYACYRA----WQQAGGAQPSIVAGHSLGEYTALVAA---GAIAFRDALPLVR 121
Query: 140 ARGKA-SKEIDLIKGMMAAV 158
R +A + + G MAA+
Sbjct: 122 FRAQAMQTAVPVGVGGMAAI 141
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.9 bits (144), Expect = 6e-10
Identities = 71/438 (16%), Positives = 127/438 (28%), Gaps = 132/438 (30%)
Query: 6 REHKNKKIQQAKQYGSNNRPV-WLLFSGM---GSQWQAMG-------KDLMKFPVFARAV 54
R K++QA RP +L G+ G W A+ + M F +F +
Sbjct: 133 RLQPYLKLRQALL---ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 55 AKCDSVLKENNVDIMNILTNEEDKTIF---DNILNSFVGIACVQIGLVDLLYEMGIKPDG 111
C+S E ++++ L + D D+ N + I +Q L LL +
Sbjct: 190 KNCNS--PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-YENC 246
Query: 112 LIGHSVGELGCAYADGALTAEQVIYAAFARG-------KASKEIDLIKGMMAAVGKSQIH 164
L+ V L A+ + AF + + D + H
Sbjct: 247 LL---V--L-----LNVQNAK--AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 165 NILFHKERNLGRYV-YLEEGAQHIPPNAIVIEIAPHGLLQPIVKKSL--GPETINIALTN 221
++ + + YL+ Q +P + P I+ +S+ G T +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVL--TTNP--RRLSIIAESIRDGLATWD----- 345
Query: 222 RSSSVDNVEFLLEAIGQLYLNGLEPDVN-------AIYPKIDYPIPPNV---------PS 265
V N + L I + LN LEP +++P IP + S
Sbjct: 346 NWKHV-NCDKLTTII-ESSLNVLEPAEYRKMFDRLSVFPP-SAHIPTILLSLIWFDVIKS 402
Query: 266 VTQFLTWDFSVKSNLGLTTGARTDWWKNIVLGI----------CSK---------EKYQ- 305
+ S + + K + I + Y
Sbjct: 403 DVMVVVNKLHKYSLV-----EK--QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 306 ------------------------HLLNYKIGEKFVVPVAAYIDLLLDFYLKK------N 335
HL N + E+ + ++D F +K
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD--FRFLEQKIRHDSTA 513
Query: 336 PNAKHV---TIENFRTYE 350
NA T++ + Y+
Sbjct: 514 WNASGSILNTLQQLKFYK 531
Score = 46.0 bits (108), Expect = 1e-05
Identities = 58/381 (15%), Positives = 121/381 (31%), Gaps = 100/381 (26%)
Query: 35 SQWQAMGKDLMKFPVFARAVAK---CDSVLKENNVDIM-NILTNEEDKTIFDNILNSFVG 90
+ Q KD++ VF A C V D+ +IL+ EE D+I+ S
Sbjct: 12 GEHQYQYKDIL--SVFEDAFVDNFDCKDVQ-----DMPKSILSKEE----IDHIIMSKDA 60
Query: 91 IACVQIGLVDLLYEMGIKPDGLIGHSVGE-LGCAYADGALTAEQVIYAAFARGKASKEID 149
++ L L K + ++ V E L Y + + + + +
Sbjct: 61 VSGTLR-LFWTLLS---KQEEMVQKFVEEVLRINY--------KFLMSPIKTEQRQPSMM 108
Query: 150 LIKGMMAAVGKSQIHNILFHKERNLGR---YVYLEEGAQHIPPNAIVIEIAPHGLL---- 202
+ + N +F K N+ R Y+ L + + P V+ G+L
Sbjct: 109 TRM-YIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKNVL---IDGVLGSGK 163
Query: 203 QPIVKKSLGPETINIALTNR-----SSSVDNVEFLLEAIGQLYLNGLEPDVNAIYPKIDY 257
+ + + + + ++ E +LE + +L ++P+ +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ-IDPNWTS-RSDHSS 221
Query: 258 PIPPNVPSVTQFLT------------------WD------FSVKSNLGLTTGAR--TDW- 290
I + S+ L + F++ + LTT + TD+
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 291 ----WKNIVL-----GICSKEKYQHLLNYKIGEKF---------VVPVAAYIDLLLDFYL 332
+I L + E LL Y + + P + ++ + +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRR--LSIIAES-I 337
Query: 333 KKNPNAKHVTIENFRTYEYDE 353
+ T +N++ D+
Sbjct: 338 RDGLA----TWDNWKHVNCDK 354
Score = 28.7 bits (63), Expect = 3.8
Identities = 19/117 (16%), Positives = 32/117 (27%), Gaps = 32/117 (27%)
Query: 244 LEPDVNAI---YPKIDYPIPPNVPSVTQFLTWDFSVKSNLGLTTGARTDWWKNIVLGICS 300
++ + Y I + + +F K D K+I+ S
Sbjct: 7 MDFETGEHQYQYKDI---LSVFEDAFVD----NFDCKDVQ--------DMPKSIL----S 47
Query: 301 KEKYQHLLNYKIGEKFVVPVAAYIDLLLDFYLKKNPNAKHVTIENFRTYEYDENVFL 357
KE+ H++ K + L L K +E Y FL
Sbjct: 48 KEEIDHIIMSK-------DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK---FL 94
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis,
malonyl-COA, acyl carrier protein TRAN (MCAT), FABD,
acyltransferase; 2.10A {Streptococcus pneumoniae}
Length = 307
Score = 57.9 bits (141), Expect = 1e-09
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 21/139 (15%)
Query: 29 LFSGMGSQWQAMGKDLM-KFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDN---- 83
LF+G G+Q+ MG+D ++P+ + + VL + +++ T E+
Sbjct: 7 LFAGQGAQYLGMGRDFYDQYPIVKETIDRASQVLGYDLRYLID--TEEDKLNQTRYTQPA 64
Query: 84 ILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGE---LGCAYADGALTAEQVIYAAFA 140
IL +A + LL E G +PD + G S+GE L + GAL E +
Sbjct: 65 ILA--TSVAIYR-----LLQEKGYQPDMVAGLSLGEYSALVAS---GALDFEDAVALVAK 114
Query: 141 RGKA-SKEIDLIKGMMAAV 158
RG + G M AV
Sbjct: 115 RGAYMEEAAPADSGKMVAV 133
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP
transacylase, , nucleophili fatty acids biosynthesis;
2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A
Length = 303
Score = 57.5 bits (140), Expect = 1e-09
Identities = 32/141 (22%), Positives = 49/141 (34%), Gaps = 20/141 (14%)
Query: 28 LLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTN--EEDKTIFDN-- 83
LL G GSQ + M ++ P A +A D+ + T E+ T
Sbjct: 5 LLAPGQGSQTEGMLSPWLQLPGAADQIAAWSKAADL---DLARLGTTASTEEITDTAVAQ 61
Query: 84 --ILNSFVGIACVQIGLVDLLYEMGI---KPDGLIGHSVGELGCAYADGALTAEQVIYAA 138
I+ + Q L + K + GHSVGE+ G + A+ + A
Sbjct: 62 PLIVA--ATLLAHQ-----ELARRCVLAGKDVIVAGHSVGEIAAYAIAGVIAADDAVALA 114
Query: 139 FARGKASKE-IDLIKGMMAAV 158
RG + M+AV
Sbjct: 115 ATRGAEMAKACATEPTGMSAV 135
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD,
xanthomonas oryzae PV. ORYZ KACC10331, transferase;
1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A*
Length = 314
Score = 56.4 bits (137), Expect = 4e-09
Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 23/141 (16%)
Query: 29 LFSGMGSQWQAMGKDLM-KFPVFARAV-AKCDSVLKENNVDIMNILTNEE-DKTIFDN-- 83
+F G GSQ M +L P R A+ + + E ++T +
Sbjct: 9 VFPGQGSQSLGMLAELSELHPQ-IRETFAEASEGAGVDLWALSQGGPEEMLNRT--EYTQ 65
Query: 84 --ILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGE---LGCAYADGALTAEQVIYAA 138
+L G+A ++ + G +P L GHS+GE L A G L+ +
Sbjct: 66 PALLA--AGVAVWRL----WTAQRGQRPALLAGHSLGEYTALVAA---GVLSLHDGAHLV 116
Query: 139 FARGKASKE-IDLIKGMMAAV 158
RG+ + G MAAV
Sbjct: 117 RLRGQFMQAAAPAGVGAMAAV 137
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty
acid/phospholipid metabolism, transferase; HET: MSE;
1.50A {Coxiella burnetii}
Length = 316
Score = 55.6 bits (135), Expect = 6e-09
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 23/142 (16%)
Query: 28 LLFSGMGSQWQAMGKDLM-KFPVFARAV-AKCDSVLKENNVDIMNILTNEE-DKTIFDN- 83
+F G GSQ M +L + P+ + S L + ++ E D+T
Sbjct: 10 FVFPGQGSQHLGMLAELGLQQPI-VLETFQQASSALAYDLWALVQHGPQERLDQT--QFT 66
Query: 84 ---ILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGE---LGCAYADGALTAEQVIYA 137
+L +A + G KP + GHS+GE L CA GAL E+ +
Sbjct: 67 QPALLT--ADVAIFRC----WEALGGPKPQVMAGHSLGEYAALVCA---GALKFEEAVKL 117
Query: 138 AFARGKA-SKEIDLIKGMMAAV 158
RG+ + + + +G M A+
Sbjct: 118 VEKRGQYMQEAVPVGEGAMGAI 139
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics,
protein structure initiative; 2.10A {Clostridium
perfringens}
Length = 336
Score = 55.6 bits (135), Expect = 7e-09
Identities = 34/142 (23%), Positives = 54/142 (38%), Gaps = 24/142 (16%)
Query: 28 LLFSGMGSQWQAMGKDLM-KFPVFARAVAKCDSVLKENNVDIMNILTN--EEDKTIFDN- 83
LF+G G+Q+ MGK+ F + L D+ + N E +
Sbjct: 6 FLFAGQGAQYVGMGKEFFDNFEESKEVFKRSSEALGI---DMEELCFNDPEGLLNKTEFT 62
Query: 84 ---ILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGE---LGCAYADGALTAEQVIYA 137
I+ +A + L ++G+K G S+GE L + GA+ E +
Sbjct: 63 QPAIIT--TNMAILT-----ALDKLGVKSHISCGLSLGEYSALIHS---GAINFEDGVKL 112
Query: 138 AFARGKASKE-IDLIKGMMAAV 158
RGK +E + G M AV
Sbjct: 113 VKKRGKFMQEAVAEGIGGMVAV 134
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium
cellulosum} PDB: 3rgi_A
Length = 281
Score = 54.4 bits (132), Expect = 1e-08
Identities = 38/142 (26%), Positives = 53/142 (37%), Gaps = 32/142 (22%)
Query: 29 LFSGMGSQWQAMGKDLM-KFP-VFARAVAKCDSVLKENNVDIMNILTNEE-DKT------ 79
+F G GSQ + MG+ L FP + ARA D VL + + ++ +T
Sbjct: 5 MFPGQGSQAKGMGRALFDAFPALTARA----DGVLGYSIRALCQDDPDQRLSQTQFTQPA 60
Query: 80 IFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGE---LGCAYADGALTAEQVIY 136
++ V E PD L GHS+GE L A G E +
Sbjct: 61 LY------VVNALSYL-----KRREEEAPPDFLAGHSLGEFSALFAA---GVFDFETGLA 106
Query: 137 AAFARGKASKEIDLIKGMMAAV 158
RG+ + G MAAV
Sbjct: 107 LVKKRGELMGDA--RGGGMAAV 126
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase;
acyltransferase; 1.50A {Escherichia coli} SCOP: c.19.1.1
d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A* 3h0p_A
3hjv_A*
Length = 309
Score = 53.7 bits (130), Expect = 3e-08
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 23/142 (16%)
Query: 28 LLFSGMGSQWQAMGKDLM-KFPVFARAV-AKCDSVLKENNVDIMNILTNEE-DKTIFDN- 83
+F G GSQ M D+ +P+ A+ + L + + EE +KT
Sbjct: 6 FVFPGQGSQTVGMLADMAASYPI-VEETFAEASAALGYDLWALTQQGPAEELNKT--WQT 62
Query: 84 ---ILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGE---LGCAYADGALTAEQVIYA 137
+L +A ++ + G P + GHS+GE L CA G + +
Sbjct: 63 QPALLT--ASVALYRV----WQQQGGKAPAMMAGHSLGEYSALVCA---GVIDFADAVRL 113
Query: 138 AFARGKA-SKEIDLIKGMMAAV 158
RGK + + G MAA+
Sbjct: 114 VEMRGKFMQEAVPEGTGAMAAI 135
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase,
structural genomics, NPPSFA; 2.10A {Thermus
thermophilus}
Length = 305
Score = 53.3 bits (129), Expect = 3e-08
Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 26/143 (18%)
Query: 28 LLFSGMGSQWQAMGKDLM-KFPVFARAV-AKCDSVLKENNVDIMNILTN--EEDKTIFDN 83
LF G GS MG+ L P A+ V + ++ L ++ ++ EE T+ +N
Sbjct: 4 ALFPGQGSHRVGMGRALYEASPA-AKEVLDRAEAALP----GLLKLMWEGPEEALTLTEN 58
Query: 84 ----ILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGE---LGCAYADGALTAEQVIY 136
+L G A + L G P GHS+GE A G L E +
Sbjct: 59 QQPALLA--AGYAAYRA----FLEAGGKPPALAAGHSLGEWTAHVAA---GTLELEDALR 109
Query: 137 AAFARGKASKE-IDLIKGMMAAV 158
RG+ +E + + +G MAAV
Sbjct: 110 LVRLRGRYMQEAVPVGEGAMAAV 132
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural
genomics center for infectious disease, S bartonella,
CAT-scratch disease; 1.60A {Bartonella henselae}
Length = 318
Score = 53.3 bits (129), Expect = 4e-08
Identities = 39/142 (27%), Positives = 59/142 (41%), Gaps = 20/142 (14%)
Query: 28 LLFSGMGSQWQAMGKDLM-KFPVFARAV-AKCDSVLKENNVDIMNILTNEE-DKTIFDN- 83
F G GSQ MGK L +F AR V + D L E DI+ + T N
Sbjct: 9 FTFPGQGSQLIGMGKVLTEQFVA-ARMVFEEVDDALSEKLSDIIFEGPADVLTLT--ANA 65
Query: 84 ---ILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGE---LGCAYADGALTAEQVIYA 137
++ V +A +++ + L + K + GHS+GE L A G +
Sbjct: 66 QPALMA--VSMAVIRV-MEQLGLNVEKKVKFVAGHSLGEYSALCAA---GTFSLTDTARL 119
Query: 138 AFARGKASKE-IDLIKGMMAAV 158
RG A + + + +G MAA+
Sbjct: 120 LRIRGNAMQAAVAVGEGSMAAL 141
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT,
transferase; 2.50A {Helicobacter pylori}
Length = 321
Score = 52.9 bits (128), Expect = 4e-08
Identities = 38/142 (26%), Positives = 55/142 (38%), Gaps = 22/142 (15%)
Query: 28 LLFSGMGSQWQAMGKDLM-KFPVFARAV-AKCDSVLKENNVDIMNILTNEEDK-TIFDN- 83
LLF G GSQ MGK + A+ + + + LK D+ L E +
Sbjct: 17 LLFPGQGSQCIGMGKSFYEGHTL-AKELFERASNALKV---DMKKTLFEENELLKESAYT 72
Query: 84 ---ILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGE---LGCAYADGALTAEQVIYA 137
I V Q L++ G+KP +GHS+GE + + GAL E+ +
Sbjct: 73 QPAIYL--VSYIAYQ--LLNKQANGGLKPVFALGHSLGEVSAVSLS---GALDFEKALKL 125
Query: 138 AFARGKASKE-IDLIKGMMAAV 158
RGK +E M V
Sbjct: 126 THQRGKMMQEACANKDASMMVV 147
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid,
decode biostructures, dried seaweed, acyltran
transferase; 2.30A {Burkholderia pseudomallei}
Length = 394
Score = 53.1 bits (128), Expect = 5e-08
Identities = 35/143 (24%), Positives = 53/143 (37%), Gaps = 31/143 (21%)
Query: 28 LLFSGMGSQWQAMGKDLM-KFP-VFARAVAKCDSVLKENNVDIMNILTNEE-DKT----- 79
+F G GSQ + MG L +F + A+A D+VL + + +E +T
Sbjct: 9 FMFPGQGSQAKGMGGALFDRFADLTAQA----DAVLGYSIRALCVDDPRDELGRTQFTQP 64
Query: 80 -IFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGE---LGCAYADGALTAEQVI 135
++ V + G PD L GHS+GE L A G E +
Sbjct: 65 ALY------VVNALTYYA----KCEDSGETPDFLAGHSLGEFNALLAA---GCFDFETGL 111
Query: 136 YAAFARGKASKEIDLIKGMMAAV 158
R + + G MAA+
Sbjct: 112 KLVARRAELMSQAR--DGAMAAI 132
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty
acid synthesis, malonyl-COA: acyl carrier protein TRAN
(MCAT), FABD; 1.46A {Staphylococcus aureus}
Length = 316
Score = 51.4 bits (124), Expect = 2e-07
Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 26/142 (18%)
Query: 28 LLFSGMGSQWQAMGKDLM-KFPVFARAV-AKCDSVLKENNVDIMNILTNEE-DKTIFDN- 83
++F G G+Q M +DL A + L + ++ M + +T +N
Sbjct: 14 IIFPGQGAQKVGMAQDLFNNNDQ-ATEILTSAAKTLDFDILETMFTDEEGKLGET--ENT 70
Query: 84 ---ILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGE---LGCAYADGALTAEQVIYA 137
+L A + + PD +GHS+GE L A L+ E +
Sbjct: 71 QPALLT--HSSALLAA-------LKNLNPDFTMGHSLGEYSSLVAA---DVLSFEDAVKI 118
Query: 138 AFARGKASKE-IDLIKGMMAAV 158
RG+ + G MAAV
Sbjct: 119 VRKRGQLMAQAFPTGVGSMAAV 140
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_G* 3hmj_G*
Length = 2051
Score = 43.5 bits (102), Expect = 9e-05
Identities = 26/151 (17%), Positives = 47/151 (31%), Gaps = 14/151 (9%)
Query: 28 LLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNS 87
+ F G + M F K + + KE N T +K + +
Sbjct: 1719 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS-TSYTFRSEKGLLSATQFT 1777
Query: 88 FVGIACVQIGLVDLLYEMGIKPDGLI--GHSVGE---LGCAYADGALTAEQVIYAAFARG 142
+ ++ + L G+ P GHS+GE L ++ E ++ F RG
Sbjct: 1778 QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL--ADVMSIESLVEVVFYRG 1835
Query: 143 KA------SKEIDLIKGMMAAVGKSQIHNIL 167
E+ M A+ ++
Sbjct: 1836 MTMQVAVPRDELGRSNYGMIAINPGRVAASF 1866
Score = 42.7 bits (100), Expect = 2e-04
Identities = 29/162 (17%), Positives = 48/162 (29%), Gaps = 35/162 (21%)
Query: 21 SNNRPVWLLFSGMGSQ--WQAMGKDLMK--FPVFARAVAKCDSVLKE------------- 63
N + +F G G+ + +DL + + + L E
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 64 NNVDIMNILTNEE---DKTIFDNILNSFVGIACVQIGLVDLLY-EMGIKPD-------GL 112
++I+ L N DK +I S I +Q+ + +G P G
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 113 IGHSVGELGCAYADGALTAE-------QVIYAAFARGKASKE 147
GHS G + + E + I F G E
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312
Score = 31.6 bits (71), Expect = 0.50
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 28 LLFSGMGSQWQAMGKDLMKFPVFARAV-AKCDSVLKEN-NVDIMNILTN 74
+F+G GSQ Q MG DL K A+ V + D+ K+ I++I+ N
Sbjct: 1664 FVFTGQGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVIN 1712
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; HET:
FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Length = 2060
Score = 42.7 bits (100), Expect = 2e-04
Identities = 31/161 (19%), Positives = 55/161 (34%), Gaps = 34/161 (21%)
Query: 21 SNNRPVWLLFSGMGSQWQAMG--KDL------MKFPVFARAVAKCDSVLKENNV------ 66
NN ++ +F G G+ + +++ + S+ +E +
Sbjct: 146 ENNVKIYSIFGGQGNIEEYFDELREIYTTYPSFVEDLITSIAELLQSLAREWDAVKQYPK 205
Query: 67 --DIMNILTNEE---DKTIFDNILNSFVGIACVQIGL-VDLLYEMGIKPD-------GLI 113
DI+ L N E D + SF I VQ+ + +G +P G
Sbjct: 206 GLDILQWLHNPESQPDTDYLVSAPVSFPLIGLVQLAHYMITCKTLGREPGELLERFSGTT 265
Query: 114 GHSVGELGCAYADGALTAE-------QVIYAAFARGKASKE 147
GHS G + A A T + + + F G S++
Sbjct: 266 GHSQGIVVAAAIATARTWDEFATAAKRAVELLFWIGLRSQQ 306
Score = 41.6 bits (97), Expect = 4e-04
Identities = 36/210 (17%), Positives = 55/210 (26%), Gaps = 68/210 (32%)
Query: 24 RPVWLLFSGMGSQWQAMGKDLM-KFP----VFARAVAKCDSVL--------KENNVDIMN 70
+F+G GSQ Q MG DL P V+ RA K N ++
Sbjct: 1670 PVTAYVFTGQGSQEQGMGMDLYATSPVAKEVWDRADKHFRENYGFSIIDIVKNNPKELTV 1729
Query: 71 ILTNEEDKTIFDNIL------------------------------------------NSF 88
K I N + +
Sbjct: 1730 HFGGPRGKIIRQNYMSMTFETVNADGSIKTEKIFKEVDENSTSYTYRSPSGLLSATQFTQ 1789
Query: 89 VGIACVQIGLVDLLYEMGI--KPDGLIGHSVGE---LGCAYADGALTAEQVIYAAFARGK 143
+ ++ + + G+ + GHS+GE L + E ++ F RG
Sbjct: 1790 PALTLMEKASFEDMRSKGLVQRDSTFAGHSLGEYSALVA--LADVMPIESLVSVVFYRGL 1847
Query: 144 A------SKEIDLIKGMMAAVGKSQIHNIL 167
E M AV S+I
Sbjct: 1848 TMQVAVERDEQGRSNYAMCAVNPSRISPTF 1877
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 33.2 bits (75), Expect = 0.15
Identities = 47/294 (15%), Positives = 91/294 (30%), Gaps = 38/294 (12%)
Query: 71 ILTNEEDKTIFDNILNSFVGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALT 130
+ + + + IF I++ I + + L+ + + D H +G + D A
Sbjct: 236 LFSANDVENIFSRIVD----IHELSVKLLGHIEDTVEMTDEGSPHP--LVGSCFEDLAEE 289
Query: 131 AEQVIYAAFARGKASKEIDLIKGMMAAVGKSQIHNILFHKERNLGRYVYLEEGAQHIPPN 190
Y ++AR + + H+ + G +YL+ +
Sbjct: 290 LAFDPYESYAR---------------DILRPGFHDRFLSQLSKPGAALYLQSIGEGFKEA 334
Query: 191 AIVIEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDNVEFLLEAIGQLYLNGLEPDVNA 250
+ P LL P+ E + L +S ++ E L +AI L ++ +
Sbjct: 335 VQY--VLPRLLLAPVYHCLHYFELLKQ-LEEKSEDQEDKECLKQAITA--LLNVQSGMEK 389
Query: 251 IYPKIDYPIPPNVPSVTQFLTWDFSVKSNLGLTTGARTDWWKNIV------LGICSKEKY 304
I K + L + KNI +G C E
Sbjct: 390 ICSK----SLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEFI 445
Query: 305 QHLLNYKIGEKFVVPVAAYIDLLLDFYLKKNPNAKHVTIENFRTYEYDENVFLR 358
++G K + + L++ K N + + Y E F+R
Sbjct: 446 MEGTLTRVGAKHERHIFLFDGLMI--CCKSNHGQPRLPGASNAEYRLKEKFFMR 497
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 29.6 bits (66), Expect = 1.3
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 2/89 (2%)
Query: 99 VDLLYEMGIKPDGLIGHSVGE-LGCAYADGALTAEQVIYAAFARGKASKEIDLIKGMMAA 157
L G + GLI S+ + + + + + E L ++
Sbjct: 97 YHWLQTKGTQNIGLIAASLSARVAYEVISDLELSFLITAVGVVNLRDTLEKALGFDYLSL 156
Query: 158 VGKSQIHNILFHKERNLGRYVYLEEGAQH 186
++ N L + LG V++ + +H
Sbjct: 157 -PIDELPNDLDFEGHKLGSEVFVRDCFEH 184
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone;
phosphotransferase, transferase, kinase, sugar
transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB:
1vrv_A* 2few_B*
Length = 125
Score = 28.3 bits (63), Expect = 1.8
Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 327 LLDFYLKKNPNAKHVTIENF-RTYEYDE 353
L + +++ P A+H+++ NF + Y
Sbjct: 69 LTERAMRQVPQAQHISLTNFLDSGLYTS 96
>2w16_A FPVA, ferripyoverdine receptor; FPVA, iron, membrane, TONB BOX,
transport, siderop cell membrane; HET: N8E PVE FHO;
2.71A {Pseudomonas aeruginosa} PDB: 2o5p_A* 2iah_A*
2w6t_A* 2w6u_A* 2w75_A* 2w76_A* 2w77_A* 2w78_A* 1xkh_A*
Length = 772
Score = 29.6 bits (67), Expect = 2.1
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 246 PDVNAIYPKIDYPIPPNVPSVTQ-----FLTWDFSVKSNLGLTTGARTDWWKN 293
+ + K D+ P ++T F+V +L L G R ++
Sbjct: 461 INWDGDIGKPDWGTPSQYIDDKTRQLGSYMTARFNVTDDLNLFLGGRVVDYRV 513
>1lql_A OSMC, osmotical inducible protein C like family; NEW fold,
structural genomics, BSGC structure funded by NIH,
protein structure initiative; 2.85A {Mycoplasma
pneumoniae} SCOP: d.227.1.1
Length = 166
Score = 27.7 bits (61), Expect = 3.7
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 1/76 (1%)
Query: 92 ACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKASKEIDLI 151
AC + I + L+ + G DG ++ S+ ++
Sbjct: 76 ACELATANLMAPAKMITINKLLMNVTGSRSTNPTDGYFGLREINLHWEIHSPNSET-EIK 134
Query: 152 KGMMAAVGKSQIHNIL 167
+ + + HN L
Sbjct: 135 EFIDFVSKRCPAHNTL 150
>3csl_A HASR protein; outer membrane protein, beta-barrel, hemophore
receptor, TON heme, iron, metal-binding, secreted; HET:
HEM; 2.70A {Serratia marcescens} PDB: 3csn_A 3ddr_A*
Length = 865
Score = 28.6 bits (63), Expect = 4.2
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 1/80 (1%)
Query: 214 TINIALTNRSSSVDNVEFLLEAIGQLYLNGLEPDVNAIYPKIDYPIPPNVPSVTQFLTWD 273
T+R S +F + Y + D + + P N + F
Sbjct: 436 GAQAQNTSRFSLAPGHDFRANYGLEFYYDKATSDSSRQGMEGVTP-AGNRSVASLFANLT 494
Query: 274 FSVKSNLGLTTGARTDWWKN 293
+ L L G R D ++
Sbjct: 495 YDYDGWLTLEGGLRYDRYRL 514
>3efm_A FAUA, ferric alcaligin siderophore receptor; membrane protein,
membrane receptor, membrane transporter, membrane, TONB
box; 2.33A {Bordetella pertussis}
Length = 707
Score = 28.1 bits (63), Expect = 5.7
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 9/68 (13%)
Query: 235 AIGQLYLNGLEPDVNAIYPKIDYPIPPNVPSVTQ---------FLTWDFSVKSNLGLTTG 285
AIG + + + I P + S +L F++ L L G
Sbjct: 382 AIGSFFDWRRAGSHHHHHHHIQEPSWADTLSPADDVRTKQTGAYLVGRFALAEPLHLIVG 441
Query: 286 ARTDWWKN 293
R WK
Sbjct: 442 DRWSDWKT 449
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.410
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,614,859
Number of extensions: 347578
Number of successful extensions: 792
Number of sequences better than 10.0: 1
Number of HSP's gapped: 758
Number of HSP's successfully gapped: 49
Length of query: 358
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 263
Effective length of database: 4,049,298
Effective search space: 1064965374
Effective search space used: 1064965374
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)