RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5082
         (358 letters)



>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of
           malonyl-CoA ACP transacylase FabD {Streptomyces
           coelicolor A3(2) [TaxId: 100226]}
          Length = 253

 Score = 84.9 bits (209), Expect = 1e-19
 Identities = 37/257 (14%), Positives = 69/257 (26%), Gaps = 56/257 (21%)

Query: 28  LLFSGMGSQWQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILNS 87
           L+  G G+Q      D +  P  A  VA     +  +          + D     +   +
Sbjct: 5   LVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAIGLDLAHFG----TKADADEIRDTSVA 60

Query: 88  FVGIACVQIGLVDLLYEMG---------IKPDGLIGHSVGELGCAYADGALTAEQVIYA- 137
              +    I     L               P  + GHSVGE+  A   G L     +   
Sbjct: 61  QPLLVAAGILSAAALGTQTSVADATGPGFTPGAVAGHSVGEITAAVFAGVLDDTAALSLV 120

Query: 138 -----------------------------AFARGKASKEIDLIKGMMAAVGKSQIHNILF 168
                                          A    +      K    +    +      
Sbjct: 121 RRRGLAMAEAAAVTVAGAFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKDGRAVASGT 180

Query: 169 HKERNLGRY----VYLEEGAQHIPPNAI--VIEIAPHGLLQPIVKKSL-GPETINIALTN 221
                L       V  +   +      +  +IE+ P G L  + K++L G +T+ +    
Sbjct: 181 EVLDRLVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKRALPGVKTLAL---- 236

Query: 222 RSSSVDNVEFLLEAIGQ 238
              + D+++   E + +
Sbjct: 237 --KTPDDLDAARELVAE 251


>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of
           malonyl-CoA ACP transacylase FabD {Escherichia coli
           [TaxId: 562]}
          Length = 235

 Score = 76.4 bits (187), Expect = 8e-17
 Identities = 35/248 (14%), Positives = 73/248 (29%), Gaps = 55/248 (22%)

Query: 28  LLFSGMGSQWQAMGKDLM-KFPVFARAVAKCDSVLKENNVDIMNILTNEEDKTIFDNILN 86
            +F G GSQ   M  D+   +P+     A+  + L  +   +             +    
Sbjct: 4   FVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQ----GPAEELNKTWQ 59

Query: 87  SFVGIACVQIGLVDLLY-EMGIKPDGLIGHSVGELGCAYADGALTAEQVIYAAFARGKA- 144
           +   +    + L  +   + G  P  + GHS+GE       G +     +     RGK  
Sbjct: 60  TQPALLTASVALYRVWQQQGGKAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRGKFM 119

Query: 145 ----------SKEIDLIKGMMAAVGKSQIHNILFHKER--------------------NL 174
                        +      +A      +  I F+                        L
Sbjct: 120 QEAVPEVPSHCALMKPAADKLAVE----LAKITFNAPTVPVVNNVDVKCETNGDAIRDAL 175

Query: 175 GRY----VYLEEGAQHIPPNAI--VIEIAPHGLLQPIVKKSLGPETINIALTNRSSSVDN 228
            R     V   +  +++    +  + E+ P  +L  + K+ +   T         S+++ 
Sbjct: 176 VRQLYNPVQWTKSVEYMAAQGVEHLYEVGPGKVLTGLTKRIVDTLTA--------SALNE 227

Query: 229 VEFLLEAI 236
              +  A+
Sbjct: 228 PSAMAAAL 235


>d1hn0a1 a.102.3.2 (A:235-618) Chondroitin ABC lyase I {Proteus
           vulgaris [TaxId: 585]}
          Length = 384

 Score = 26.9 bits (59), Expect = 3.8
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 10/109 (9%)

Query: 37  WQAMGKDLMKFPVFARAVAKCDSVLKENNVDIMNILTN--------EEDKTIFDNILNSF 88
              +   L+ +    ++          +++D  N L+         E D     N++N+F
Sbjct: 180 QTQVYDSLLWYSREFKSSFDMKVSADSSDLDYFNTLSRQHLALLLLEPDDQKRINLVNTF 239

Query: 89  VGIACVQIGLVDLLYEMGIKPDGLIGHSVGELGCAYADGAL-TAEQVIY 136
                  +  V    + G++PDG      G     Y+  A   A Q+IY
Sbjct: 240 SHYITGALTQVPPGGKDGLRPDGTAWRHEGNYP-GYSFPAFKNASQLIY 287


>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor
           TraR, C-terminal domain {Agrobacterium tumefaciens
           [TaxId: 358]}
          Length = 65

 Score = 24.8 bits (54), Expect = 5.1
 Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 128 ALTA-EQVIYAAFARGKASKEIDLIKGMMAAVGKSQIHNIL 167
            L   E       A GK  +EI  ++G+     + ++   +
Sbjct: 4   WLDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAM 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,364,266
Number of extensions: 64467
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 11
Length of query: 358
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 272
Effective length of database: 1,226,816
Effective search space: 333693952
Effective search space used: 333693952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)