BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5085
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3US9|A Chain A, Crystal Structure Of The Ncx1 Intracellular Tandem Calcium
Binding Domains(Cbd12)
Length = 295
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 118/219 (53%), Gaps = 16/219 (7%)
Query: 97 FHAVTVAVREDIGSFKVGILRHG-NLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENE 155
F T E+ G+ + I+R G +L N V + DG+A G Y+ TVVFK E
Sbjct: 14 FEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKPGE 73
Query: 156 TEKFVTIRIINDEKWDPVEEFFLRLTLLNKSAD--------------MVKLGGLNIMEVT 201
T+K + + II+D+ ++ + F + L+ + S++ + LG + VT
Sbjct: 74 TQKEIRVGIIDDDIFEEDKNFLVHLSNVKVSSEASEDGILEANHVSALACLGSPSTATVT 133
Query: 202 IIDDDDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAI-SSRDYKG 260
I DDD GI FE+ V ES G++ + +LRTSG+ G+V V +KT++ TA D++
Sbjct: 134 IFDDDHAGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFED 193
Query: 261 GSGVITFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEP 299
G + F++ E+ + + + +IDD + EK++ F +++ EP
Sbjct: 194 TCGELEFQNDEIVKTISVKVIDDEEYEKNKTFFLEIGEP 232
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 93 AIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAK-QGKRYQKVNQTVVF 151
I F V E IG +V +LR + V +I+G+A+ G+ ++ + F
Sbjct: 141 GIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELEF 200
Query: 152 KENETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMVKLGGLNIMEVTIIDDDDP 208
+ +E K +++++I+DE+++ + FFL + K GG I E DD P
Sbjct: 201 QNDEIVKTISVKVIDDEEYEKNKTFFLEIGEPRLVEMSEKKGGFTITEE--YDDKQP 255
>pdb|3RB7|A Chain A, Crystal Structure Of Cbd12 From Calx1.2
pdb|3RB7|B Chain B, Crystal Structure Of Cbd12 From Calx1.2
pdb|3RB7|E Chain E, Crystal Structure Of Cbd12 From Calx1.2
pdb|3RB7|G Chain G, Crystal Structure Of Cbd12 From Calx1.2
Length = 298
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 107/203 (52%), Gaps = 3/203 (1%)
Query: 97 FHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENET 156
F V E+ G F+V ++R G++ A V ++ DG+A G + + F
Sbjct: 14 FEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVD 73
Query: 157 EKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMVKLGGLNIMEVTIIDDDDPGIIQFEKR 216
E+ I +I+D+ ++ E F++RL N S + VKL I V I+DDD GI F
Sbjct: 74 EQRFRIEVIDDDVFEEDECFYIRL--FNPS-EGVKLAVPMIATVMILDDDHAGIFAFTDS 130
Query: 217 GYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSGVITFKHGEVRRVL 276
+ + ES G + ++R SG+ G V V + T + TA S+DY+G G + F++ E + +
Sbjct: 131 VFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNESEKFI 190
Query: 277 EIPIIDDLKPEKDEYFEVKLSEP 299
++ I+++ EKD F+V + EP
Sbjct: 191 DLFILEESSYEKDVSFKVHIGEP 213
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%)
Query: 206 DDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSGVI 265
DDP + FE Y V E+ G + ++R SV+++T D TA + D+ G G++
Sbjct: 7 DDPIRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLL 66
Query: 266 TFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGGAKIGVVNHCAVTITNDD 319
+F G + I +IDD E+DE F ++L P+ G K+ V V I +DD
Sbjct: 67 SFPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDD 120
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 40/79 (50%)
Query: 93 AIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFK 152
I F + E +G F++ ++R+ + V + + +A + K Y+ +VF+
Sbjct: 123 GIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFE 182
Query: 153 ENETEKFVTIRIINDEKWD 171
NE+EKF+ + I+ + ++
Sbjct: 183 NNESEKFIDLFILEESSYE 201
>pdb|3RB5|A Chain A, Crystal Structure Of Calcium Binding Domain Cbd12 Of
Calx1.1
pdb|3RB5|B Chain B, Crystal Structure Of Calcium Binding Domain Cbd12 Of
Calx1.1
Length = 298
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 107/203 (52%), Gaps = 3/203 (1%)
Query: 97 FHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENET 156
F V E+ G F+V ++R G++ A V ++ DG+A G + + F
Sbjct: 14 FEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVD 73
Query: 157 EKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMVKLGGLNIMEVTIIDDDDPGIIQFEKR 216
E+ I +I+D+ ++ E F++RL N S + VKL I V I+DDD GI F
Sbjct: 74 EQRFRIEVIDDDVFEEDECFYIRL--FNPS-EGVKLAVPMIATVMILDDDHAGIFAFTDS 130
Query: 217 GYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSGVITFKHGEVRRVL 276
+ + ES G + ++R SG+ G V V + T + TA S+DY+G G + F++ E + +
Sbjct: 131 VFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNESEKFI 190
Query: 277 EIPIIDDLKPEKDEYFEVKLSEP 299
++ I+++ EKD F+V + EP
Sbjct: 191 DLFILEESSYEKDVSFKVHIGEP 213
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%)
Query: 206 DDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSGVI 265
DDP + FE Y V E+ G + ++R SV+++T D TA + D+ G G++
Sbjct: 7 DDPIRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLL 66
Query: 266 TFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGGAKIGVVNHCAVTITNDD 319
+F G + I +IDD E+DE F ++L P+ G K+ V V I +DD
Sbjct: 67 SFPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDD 120
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 40/79 (50%)
Query: 93 AIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFK 152
I F + E +G F++ ++R+ + V + + +A + K Y+ +VF+
Sbjct: 123 GIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFE 182
Query: 153 ENETEKFVTIRIINDEKWD 171
NE+EKF+ + I+ + ++
Sbjct: 183 NNESEKFIDLFILEESSYE 201
>pdb|3EAD|A Chain A, Crystal Structure Of Calx-Cbd1
pdb|3EAD|B Chain B, Crystal Structure Of Calx-Cbd1
pdb|3EAD|C Chain C, Crystal Structure Of Calx-Cbd1
pdb|3EAD|D Chain D, Crystal Structure Of Calx-Cbd1
Length = 137
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%)
Query: 206 DDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSGVI 265
DDP + FE Y V E+ G + ++R SV+++T D TA + D+ G G++
Sbjct: 2 DDPIRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLL 61
Query: 266 TFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGGAKIGVVNHCAVTITNDD 319
+F G + I +IDD E+DE F ++L P+ G K+ V V I +DD
Sbjct: 62 SFPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDD 115
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 104 VREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENETEKFVTIR 163
V E+ G F+V ++R G++ A V ++ DG+A G + + F E+ I
Sbjct: 16 VMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVDEQRFRIE 75
Query: 164 IINDEKWDPVEEFFLRLTLLNKSADMVKLGGLNIMEVTIIDDDDPGIIQFEKRGYLVKES 223
+I+D+ ++ E F++R L N S + VKL I V I+DDD GI F + + ES
Sbjct: 76 VIDDDVFEEDECFYIR--LFNPS-EGVKLAVPMIATVMILDDDHAGIFAFTDSVFEITES 132
Query: 224 SG 225
G
Sbjct: 133 VG 134
>pdb|2DPK|A Chain A, The Crystal Structure Of The Primary Ca2+ Sensor Of The
Na+CA2+ EXCHANGER
Length = 152
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 15/136 (11%)
Query: 95 IEFHAVTVAVREDIGSFKVGILRHG-NLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKE 153
I F T E+ G+ + I+R G +L N V + DG+A G Y+ TVVFK
Sbjct: 17 IFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKP 76
Query: 154 NETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSAD--------------MVKLGGLNIME 199
ET+K + + II+D+ ++ E F + L+ + S++ + LG +
Sbjct: 77 GETQKEIRVGIIDDDIFEEDENFLVHLSNVKVSSEASEDGILEANHVSALACLGSPSTAT 136
Query: 200 VTIIDDDDPGIIQFEK 215
VTI DDD GI FE+
Sbjct: 137 VTIFDDDHAGIFTFEE 152
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 211 IQFEKRGYLVKESSGVVAIPILRTSGS-DGDVSVKWKTVDKTAISSRDYKGGSGVITFKH 269
I FE+ Y E+ G VA+ I+R G V V ++T D TA + DY+ G + FK
Sbjct: 17 IFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKP 76
Query: 270 GEVRRVLEIPIIDDLKPEKDEYFEVKLS 297
GE ++ + + IIDD E+DE F V LS
Sbjct: 77 GETQKEIRVGIIDDDIFEEDENFLVHLS 104
>pdb|2FWS|A Chain A, First Ca2+ Binding Domain Of The Na,Ca-Exchanger (Ncx1)
Length = 139
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 15/136 (11%)
Query: 95 IEFHAVTVAVREDIGSFKVGILRHG-NLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKE 153
I F T E+ G+ + I+R G +L N V + DG+A G Y+ TVVFK
Sbjct: 4 IFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKP 63
Query: 154 NETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSAD--------------MVKLGGLNIME 199
ET+K + + II+D+ ++ E F + L+ + S++ + LG +
Sbjct: 64 GETQKEIRVGIIDDDIFEEDENFLVHLSNVKVSSEASEDGILEANHVSALACLGSPSTAT 123
Query: 200 VTIIDDDDPGIIQFEK 215
VTI DDD GI FE+
Sbjct: 124 VTIFDDDHAGIFTFEE 139
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 211 IQFEKRGYLVKESSGVVAIPILRTSGS-DGDVSVKWKTVDKTAISSRDYKGGSGVITFKH 269
I FE+ Y E+ G VA+ I+R G V V ++T D TA + DY+ G + FK
Sbjct: 4 IFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKP 63
Query: 270 GEVRRVLEIPIIDDLKPEKDEYFEVKLS 297
GE ++ + + IIDD E+DE F V LS
Sbjct: 64 GETQKEIRVGIIDDDIFEEDENFLVHLS 91
>pdb|3GIN|A Chain A, Crystal Structure Of E454k-Cbd1
pdb|3GIN|B Chain B, Crystal Structure Of E454k-Cbd1
Length = 160
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 15/136 (11%)
Query: 95 IEFHAVTVAVREDIGSFKVGILRHG-NLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKE 153
I F T E+ G+ + I+R G +L N V + DG+A G Y+ TVVFK
Sbjct: 25 IFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKP 84
Query: 154 NETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSAD--------------MVKLGGLNIME 199
ET+K + + II+D+ ++ + F + L+ + S++ + LG +
Sbjct: 85 GETQKEIRVGIIDDDIFEEDKNFLVHLSNVKVSSEASEDGILEANHVSALACLGSPSTAT 144
Query: 200 VTIIDDDDPGIIQFEK 215
VTI DDD GI FE+
Sbjct: 145 VTIFDDDHAGIFTFEE 160
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 211 IQFEKRGYLVKESSGVVAIPILRTSGS-DGDVSVKWKTVDKTAISSRDYKGGSGVITFKH 269
I FE+ Y E+ G VA+ I+R G V V ++T D TA + DY+ G + FK
Sbjct: 25 IFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKP 84
Query: 270 GEVRRVLEIPIIDDLKPEKDEYFEVKLS 297
GE ++ + + IIDD E+D+ F V LS
Sbjct: 85 GETQKEIRVGIIDDDIFEEDKNFLVHLS 112
>pdb|2FWU|A Chain A, Second Ca2+ Binding Domain Of The Na,Ca-Exchanger (Ncx1)
Length = 157
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 209 GIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAI-SSRDYKGGSGVITF 267
GI FE+ V ES G++ + +LRTSG+ G+V V +KT++ TA D++ G + F
Sbjct: 3 GIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELEF 62
Query: 268 KHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEP 299
++ E+ + + + +IDD + EK++ F +++ EP
Sbjct: 63 QNDEIVKTISVKVIDDEEYEKNKTFFLEIGEP 94
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 93 AIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQG-KRYQKVNQTVVF 151
I F V E IG +V +LR + V +I+G+A+ G + ++ + F
Sbjct: 3 GIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELEF 62
Query: 152 KENETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMVKLGGLNIMEVTIIDDDDP 208
+ +E K +++++I+DE+++ + FFL + K GG I E DD P
Sbjct: 63 QNDEIVKTISVKVIDDEEYEKNKTFFLEIGEPRLVEMSEKKGGFTITEE--YDDKQP 117
>pdb|2KLS|A Chain A, Apo-Form Of The Second Ca2+ Binding Domain Of Ncx1.4
Length = 164
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 209 GIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAI-SSRDYKGGSGVITF 267
GI FE+ V ES G++ + +LRTSG+ G+V V +KT++ TA D++ G + F
Sbjct: 10 GIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELEF 69
Query: 268 KHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEP 299
++ E+ + + + +IDD + EK++ F +++ EP
Sbjct: 70 QNDEIVKTISVKVIDDEEYEKNKTFFLEIGEP 101
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 93 AIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQG-KRYQKVNQTVVF 151
I F V E IG +V +LR + V +I+G+A+ G + ++ + F
Sbjct: 10 GIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELEF 69
Query: 152 KENETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMVKLGGLNIMEVTIIDDDDP 208
+ +E K +++++I+DE+++ + FFL + K GG I E DD P
Sbjct: 70 QNDEIVKTISVKVIDDEEYEKNKTFFLEIGEPRLVEMSEKKGGFTITEE--YDDKQP 124
>pdb|2QVK|A Chain A, The Second Ca2+-Binding Domain Of The Na+-Ca2+ Exchanger
Is Essential For Regulation: Crystal Structures And
Mutational Analysis
pdb|2QVM|A Chain A, The Second Ca2+-Binding Domain Of The Na+-Ca2+ Exchanger
Is Essential For Regulation: Crystal Structures And
Mutational Analysis
Length = 192
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 209 GIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAI-SSRDYKGGSGVITF 267
GI FE+ V ES G++ + +LRTSG+ G+V V +KT++ TA D++ G + F
Sbjct: 6 GIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELEF 65
Query: 268 KHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEP 299
++ E+ + + + +IDD + EK++ F +++ EP
Sbjct: 66 QNDEIVKTISVKVIDDEEYEKNKTFFLEIGEP 97
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Query: 93 AIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQG-KRYQKVNQTVVF 151
I F V E IG +V +LR + V +I+G+A+ G + ++ + F
Sbjct: 6 GIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELEF 65
Query: 152 KENETEKFVTIRIINDEKWDPVEEFFL-----RLTLLNKSADMV--KLGGLNI 197
+ +E K +++++I+DE+++ + FFL RL +++ ++ +LGG I
Sbjct: 66 QNDEIVKTISVKVIDDEEYEKNKTFFLEIGEPRLVEMSEKKALLLNELGGFTI 118
>pdb|3E9T|A Chain A, Crystal Structure Of Apo-Form Calx Cbd1 Domain
pdb|3E9T|B Chain B, Crystal Structure Of Apo-Form Calx Cbd1 Domain
pdb|3E9T|C Chain C, Crystal Structure Of Apo-Form Calx Cbd1 Domain
pdb|3E9T|D Chain D, Crystal Structure Of Apo-Form Calx Cbd1 Domain
Length = 114
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%)
Query: 211 IQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSGVITFKHG 270
+ FE Y V E+ G + ++R SV+++T D TA + D+ G G+++F G
Sbjct: 5 MYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPG 64
Query: 271 EVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGGAKIGVVNHCAVTITNDD 319
+ I +IDD E+DE F ++L P+ G K+ V V I +DD
Sbjct: 65 VDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDD 113
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 97 FHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENET 156
F V E+ G F+V ++R G++ A V ++ DG+A G + + F
Sbjct: 7 FEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVD 66
Query: 157 EKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMVKLGGLNIMEVTIIDDD 206
E+ I +I+D+ ++ E F++R L N S + VKL I V I+DDD
Sbjct: 67 EQRFRIEVIDDDVFEEDECFYIR--LFNPS-EGVKLAVPMIATVMILDDD 113
>pdb|2LT9|A Chain A, The Solution Structure Of Ca2+ Binding Domain 2b Of The
Third Isoform Of The Na+CA2+ EXCHANGER
Length = 157
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 209 GIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAI-SSRDYKGGSGVITF 267
GI FE V ES GV+ + +LRTSG+ G V V ++TV+ TA D++ G + F
Sbjct: 12 GIFTFECDTIHVSESIGVMEVKVLRTSGARGTVIVPFRTVEGTAKGGGEDFEDAYGELEF 71
Query: 268 KHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEP 299
K+ E + + + I+D+ + E+ E F + L EP
Sbjct: 72 KNDETVKTIRVKIVDEEEYERQENFFIALGEP 103
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 93 AIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQG-KRYQKVNQTVVF 151
I F T+ V E IG +V +LR + V +++G+AK G + ++ + F
Sbjct: 12 GIFTFECDTIHVSESIGVMEVKVLRTSGARGTVIVPFRTVEGTAKGGGEDFEDAYGELEF 71
Query: 152 KENETEKFVTIRIINDEKWDPVEEFFLRL 180
K +ET K + ++I+++E+++ E FF+ L
Sbjct: 72 KNDETVKTIRVKIVDEEEYERQENFFIAL 100
>pdb|3E9U|A Chain A, Crystal Structure Of Calx Cbd2 Domain
Length = 162
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%)
Query: 209 GIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSGVITFK 268
GI F + + ES G + ++R SG+ G V V + T + TA S+DY+G G + F+
Sbjct: 8 GIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFE 67
Query: 269 HGEVRRVLEIPIIDDLKPEKDEYFEVKLSEP 299
+ E + +++ I+++ EKD F+V + EP
Sbjct: 68 NNESEKFIDLFILEESSYEKDVSFKVHIGEP 98
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 41/81 (50%)
Query: 91 NYAIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVV 150
+ I F + E +G F++ ++R+ + V + + +A + K Y+ +V
Sbjct: 6 EFGIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELV 65
Query: 151 FKENETEKFVTIRIINDEKWD 171
F+ NE+EKF+ + I+ + ++
Sbjct: 66 FENNESEKFIDLFILEESSYE 86
>pdb|2KLT|A Chain A, Second Ca2+ Binding Domain Of Ncx1.3
Length = 163
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 209 GIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAI-SSRDYKGGSGVITF 267
GI FE+ V ES G++ + +LRTSG+ G+V V +KT++ TA D++ G + F
Sbjct: 10 GIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELEF 69
Query: 268 KHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEP 299
++ E+ +++ I I D + EK+ F + L EP
Sbjct: 70 QNDEIVKIITIRIFDREEYEKECSFSLVLEEP 101
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 93 AIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAK-QGKRYQKVNQTVVF 151
I F V E IG +V +LR + V +I+G+A+ G+ ++ + F
Sbjct: 10 GIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELEF 69
Query: 152 KENETEKFVTIRIINDEKWDPVEEFFLRL 180
+ +E K +TIRI + E+++ F L L
Sbjct: 70 QNDEIVKIITIRIFDREEYEKECSFSLVL 98
>pdb|3FQ4|A Chain A, Crystal Structure Of The Calx-Beta Domain Of Integrin
Beta4
pdb|3FQ4|B Chain B, Crystal Structure Of The Calx-Beta Domain Of Integrin
Beta4
pdb|3FSO|A Chain A, Crystal Structure Of The Calx-Beta Domain Of Integrin
Beta4, Calcium Soak
pdb|3FSO|B Chain B, Crystal Structure Of The Calx-Beta Domain Of Integrin
Beta4, Calcium Soak
pdb|3H6A|A Chain A, Structure Of The Calx-Beta Domain Of Integrin Beta4
Crystallized In The Presence Of Calcium
pdb|3H6A|B Chain B, Structure Of The Calx-Beta Domain Of Integrin Beta4
Crystallized In The Presence Of Calcium
Length = 123
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 210 IIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSGVITFKH 269
++ FE+ + V V IP++R G V ++T D TA +RDY G + F+
Sbjct: 7 VVSFEQPEFSVSRGDQVARIPVIRRVLDGGKSQVSYRTQDGTAQGNRDYIPVEGELLFQP 66
Query: 270 GEVRRVLEIPIID------DLKPEKDEYFEVKLSEPTGGAKIGVVNHCAVTITNDD 319
GE + L++ +++ L+ + F V+LS P GA +G + + I + D
Sbjct: 67 GEAWKELQVKLLELQEVDSLLRGRQVRRFHVQLSNPKFGAHLGQPHSTTIIIRDPD 122
>pdb|3SO2|A Chain A, Chlorella Dutpase
Length = 146
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 178 LRLTLLNKSADMVKLGGLNIMEVTIIDDDDPGIIQFEKRGYLVKESSGVVAIP---ILRT 234
LR+ LLN+ A + K G + +D + RG V ++ +AIP R
Sbjct: 7 LRVHLLNEHAVLPKRGSAGAAGFDLASCED---TEVPARGRAVVKTGLQIAIPPGTYARV 63
Query: 235 SGSDGDVSVKWKTVDKTAISSRDYKGGSGVITFKHGE 271
+ G ++VK + DY+G GV+ F HGE
Sbjct: 64 APRSG-LAVKHFIDTGAGVVDEDYRGEVGVVLFNHGE 99
>pdb|3BRJ|A Chain A, Crystal Structure Of Mannitol Operon Repressor (Mtlr) From
Vibrio Parahaemolyticus Rimd 2210633
pdb|3BRJ|B Chain B, Crystal Structure Of Mannitol Operon Repressor (Mtlr) From
Vibrio Parahaemolyticus Rimd 2210633
pdb|3BRJ|C Chain C, Crystal Structure Of Mannitol Operon Repressor (Mtlr) From
Vibrio Parahaemolyticus Rimd 2210633
pdb|3BRJ|D Chain D, Crystal Structure Of Mannitol Operon Repressor (Mtlr) From
Vibrio Parahaemolyticus Rimd 2210633
Length = 175
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 194 GLNIMEVTIIDDDDPGIIQ--FEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTV 248
G I V + ++ G+IQ F K + V+ G P+L+ SG GD+SV+ K +
Sbjct: 25 GFFIATVDVFNESIDGLIQRIFRKDNFAVQSVVG----PLLQDSGPLGDLSVRLKLL 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,534,389
Number of Sequences: 62578
Number of extensions: 335467
Number of successful extensions: 768
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 712
Number of HSP's gapped (non-prelim): 36
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)