Query psy5085
Match_columns 319
No_of_seqs 298 out of 1364
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 16:56:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00845 caca sodium/calcium 100.0 6.3E-69 1.4E-73 554.1 32.6 300 3-319 314-675 (928)
2 KOG1306|consensus 100.0 5.2E-31 1.1E-35 252.9 13.3 137 18-257 226-362 (596)
3 smart00237 Calx_beta Domains i 99.9 3E-23 6.5E-28 162.0 12.7 90 92-181 1-90 (90)
4 smart00237 Calx_beta Domains i 99.9 3.5E-22 7.6E-27 155.9 11.4 90 208-297 1-90 (90)
5 PF03160 Calx-beta: Calx-beta 99.9 2.5E-21 5.5E-26 153.5 13.2 99 198-297 1-100 (100)
6 TIGR00845 caca sodium/calcium 99.9 1.5E-21 3.2E-26 203.1 14.3 116 204-319 395-525 (928)
7 PF03160 Calx-beta: Calx-beta 99.8 3E-19 6.4E-24 141.6 13.1 88 94-181 12-100 (100)
8 KOG1306|consensus 98.6 2.1E-08 4.6E-13 97.8 4.5 97 212-309 222-337 (596)
9 KOG4289|consensus 91.8 15 0.00032 41.8 18.2 202 96-319 373-608 (2531)
10 KOG4289|consensus 84.8 23 0.00051 40.4 14.1 141 96-255 268-421 (2531)
11 PF00345 PapD_N: Pili and flag 77.7 34 0.00074 27.3 10.8 85 95-181 2-89 (122)
12 PF08522 DUF1735: Domain of un 62.5 23 0.00051 26.6 5.5 40 142-181 35-74 (86)
13 KOG1219|consensus 59.5 4.3E+02 0.0094 32.8 17.1 134 96-249 2077-2217(4289)
14 PF14494 DUF4436: Domain of un 48.2 2.3E+02 0.005 26.3 13.7 124 108-237 24-166 (256)
15 PRK15295 fimbrial assembly cha 46.2 2.3E+02 0.0049 25.6 19.2 86 92-181 18-107 (226)
16 PRK15195 fimbrial chaperone pr 44.7 2.4E+02 0.0052 25.5 20.1 88 92-181 24-112 (229)
17 PF08522 DUF1735: Domain of un 43.5 59 0.0013 24.4 4.9 40 261-300 38-79 (86)
18 cd00031 CA Cadherin repeat dom 38.3 2.4E+02 0.0052 23.7 21.2 80 170-252 62-146 (199)
19 PRK09926 putative chaperone pr 34.2 3.7E+02 0.0079 24.6 11.7 86 92-181 24-117 (246)
20 PRK15299 fimbrial chaperone pr 33.4 3.6E+02 0.0078 24.3 19.4 87 92-181 21-111 (227)
21 PF00345 PapD_N: Pili and flag 33.3 2.4E+02 0.0053 22.2 9.5 82 213-298 4-90 (122)
22 cd00407 Urease_beta Urease bet 27.9 2.4E+02 0.0051 22.4 6.0 70 92-162 3-81 (101)
23 PRK15188 fimbrial chaperone pr 27.7 4.7E+02 0.01 23.8 19.7 87 93-181 27-114 (228)
24 PF08694 UFC1: Ubiquitin-fold 24.4 50 0.0011 27.9 1.7 30 2-38 27-56 (161)
25 PRK15192 fimbrial chaperone Bc 23.6 5.6E+02 0.012 23.3 19.6 87 92-181 21-115 (234)
26 PRK15224 pili assembly chapero 23.1 5.8E+02 0.013 23.3 18.7 89 90-181 25-114 (237)
27 PF11476 TgMIC1: Toxoplasma go 22.1 4.3E+02 0.0093 21.4 6.8 69 171-247 14-89 (137)
28 KOG3357|consensus 21.3 83 0.0018 26.1 2.4 29 2-37 30-58 (167)
29 PRK15195 fimbrial chaperone pr 20.1 6.5E+02 0.014 22.7 10.3 87 210-298 26-113 (229)
No 1
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=100.00 E-value=6.3e-69 Score=554.06 Aligned_cols=300 Identities=29% Similarity=0.458 Sum_probs=275.4
Q ss_pred chhhHHHHHHHHHHhh-------------hHHHHhcCCcceeEEEeeeeeehhcCCcccchhhHhHHHHHhhhcccCccc
Q psy5085 3 RLKKYYLAIFWKFIKQ-------------TTVLVNATNHTALWYQIGAVRKFTGAKRTEPVLNQRLQEVYKVLNKKDKDS 69 (319)
Q Consensus 3 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~sra~yri~a~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (319)
+.|++|++|++.++|+ +++++.+||||||||||||||+|+|+||++||+.++++++.. +
T Consensus 314 ~~r~~~~~~l~el~~~~p~~~~~~l~~~a~~~~~~~~~ksRAfYRiqaTR~~~G~g~i~~k~~~~~~~~~~--------~ 385 (928)
T TIGR00845 314 EARREMIRILKELKQKHPDKDLEQLEEMANYQVLSRQQKSRAFYRIQATRLMTGAGNILKKHAADAARKAV--------S 385 (928)
T ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCcceeeeeeehhhhccCCcchhhhHHhhhchhh--------c
Confidence 3688999999999998 899999999999999999999999999999998876665532 1
Q ss_pred cccccccccccccccccCCCCCeeEEEEEeeeEEEecCCeEEEEEEEEeC-CCCceEEEEEEEeCCCccCCCCeeeeceE
Q psy5085 70 LDNKTTDKVETTTEFKIETKTNYAIIEFHAVTVAVREDIGSFKVGILRHG-NLQNIARVRVDSIDGSAKQGKRYQKVNQT 148 (319)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~d~~~~~i~F~~~~y~V~E~~g~v~vtV~R~g-~~~~~vtV~~~t~dGTA~~g~Dy~~~~gt 148 (319)
...+ ..++.+|++.++|+|++++|+|+|++|+++++|.|+| +++.+++|+|+|.||||++|.||.+.+|+
T Consensus 386 ~~~~---------~~~~~~dd~~s~i~Fe~~~Y~V~En~GtV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~~~sGT 456 (928)
T TIGR00845 386 MHEV---------ATDDEENDPVSKIFFEPGHYTCLENCGTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFTEGT 456 (928)
T ss_pred chhc---------cccccccCCcceEEecCCeEEEeecCcEEEEEEEEccCCCCceEEEEEEccCCccCCCCCccccCce
Confidence 1111 1235667889999999999999999999999999996 78889999999999999999999999999
Q ss_pred EEEeCCceEEEEEEEEecCCCCCCceEEEEEEE-eecCCC---------Cccc-ccceeeeEEEEeeCCCCceeeeeecc
Q psy5085 149 VVFKENETEKFVTIRIINDEKWDPVEEFFLRLT-LLNKSA---------DMVK-LGGLNIMEVTIIDDDDPGIIQFEKRG 217 (319)
Q Consensus 149 l~F~~Get~k~i~I~IidD~i~E~dE~F~v~L~-~~~~~~---------~~~~-lg~~~~a~VtI~Ddd~~g~~~F~~~~ 217 (319)
|+|+|||++|+|+|.|+||+++|+||+|+|+|+ |+.+.. .+.+ ||.++.++|||+|||++|+|+|+++.
T Consensus 457 LtF~PGEt~KtItV~IIDDdi~E~DE~F~V~LSNp~~g~~~G~~~~~~~~~~A~Lg~ps~ATVTIlDDD~aGIfsFe~~~ 536 (928)
T TIGR00845 457 LVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLRVGSEDGILEANHVSAVAQLASPNTATVTILDDDHAGIFTFEEDV 536 (928)
T ss_pred EEECCCceEEEEEEEEccCCCCCCCceEEEEEeCCCCCCcccccccccccccceecCCceEEEEEecCcccCcccccCce
Confidence 999999999999999999999999999999999 874411 1245 99999999999999999999999999
Q ss_pred eeecCCCceEEEeEEecCCCCCcEEEEEEeeeccccCC-CcccccceEEEEeCCeeEEEEEEEeecCCCCCCCeEEEEEE
Q psy5085 218 YLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISS-RDYKGGSGVITFKHGEVRRVLEIPIIDDLKPEKDEYFEVKL 296 (319)
Q Consensus 218 ~~V~E~~g~~~v~V~R~~g~~g~v~V~~~t~dGTA~~G-~DY~~~~g~l~F~~get~k~i~I~IidD~~~E~dE~F~v~L 296 (319)
|.|.|+.|.+.++|.|++|++|.|+|+|.|.+|||++| .||...+|+|+|++||++|+|+|+|+||.++|++|+|.|+|
T Consensus 537 ~sV~Es~G~vtvtV~RtsGa~G~VtV~Y~T~dGTA~aGg~DY~~~sGtLtF~~GEtsKtItV~IiDD~~~E~dEtF~V~L 616 (928)
T TIGR00845 537 FHVSESIGIMEVKVLRTSGARGTVIVPYRTVEGTARGGGKDFEDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIEL 616 (928)
T ss_pred EEEEcCCCEEEEEEEEcCCCCeeEEEEEEeecCccCCCCCCcccccceEEEcCCcEEEEEEEEEcCCCcccCceeEEEEE
Confidence 99999999999999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred eCCC------------------------------------CCeeeeccceEEEEEeCCC
Q psy5085 297 SEPT------------------------------------GGAKIGVVNHCAVTITNDD 319 (319)
Q Consensus 297 ~~p~------------------------------------g~~~lG~~~~~~VtI~ddd 319 (319)
++|. |+|+||++++++|+|.+|+
T Consensus 617 s~P~~~~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~iae~gkp~LGe~tk~~V~I~es~ 675 (928)
T TIGR00845 617 GEPRWAKRGIKAALLLNETITDDDQKLTSKEEEERRIAEMGKPRLGEHTKLEVIIEESY 675 (928)
T ss_pred cCCcccccccccchhccccccccccccccccchhHHHHhcCCCcCCCceeEEEEEeecH
Confidence 9987 8899999999999999885
No 2
>KOG1306|consensus
Probab=99.97 E-value=5.2e-31 Score=252.91 Aligned_cols=137 Identities=31% Similarity=0.454 Sum_probs=126.3
Q ss_pred hhHHHHhcCCcceeEEEeeeeeehhcCCcccchhhHhHHHHHhhhcccCccccccccccccccccccccCCCCCeeEEEE
Q psy5085 18 QTTVLVNATNHTALWYQIGAVRKFTGAKRTEPVLNQRLQEVYKVLNKKDKDSLDNKTTDKVETTTEFKIETKTNYAIIEF 97 (319)
Q Consensus 18 ~~~~~~~~~~~sra~yri~a~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~F 97 (319)
-+|+++.+|+||||||||||||+|+|+||++| . ++
T Consensus 226 A~y~V~~~~~ksrafyriqaTr~m~gsg~~~r----------~------------------------d~----------- 260 (596)
T KOG1306|consen 226 AEYHVLESQRKSRAFYRIQATRLMQGSGNAVR----------T------------------------DE----------- 260 (596)
T ss_pred HHHHHHhhhhhceeeEEeeeeeccccccceee----------e------------------------cc-----------
Confidence 68999999999999999999999999998874 0 01
Q ss_pred EeeeEEEecCCeEEEEEEEEeCCCCceEEEEEEEeCCCccCCCCeeeeceEEEEeCCceEEEEEEEEecCCCCCCceEEE
Q psy5085 98 HAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENETEKFVTIRIINDEKWDPVEEFF 177 (319)
Q Consensus 98 ~~~~y~V~E~~g~v~vtV~R~g~~~~~vtV~~~t~dGTA~~g~Dy~~~~gtl~F~~Get~k~i~I~IidD~i~E~dE~F~ 177 (319)
|.|+ +|+|+||+|++|.||+..+++|.|+||+++|+|.|.|+||+++|+||
T Consensus 261 -------------------r~g~-------~y~TedgsA~AgtDyv~~egtl~F~PG~~~q~~~V~IiDddife~dE--- 311 (596)
T KOG1306|consen 261 -------------------RDGG-------DYKTEDGSAEAGTDYVGIEGTLDFAPGVRMQTFQVGIIDDDIFEEDE--- 311 (596)
T ss_pred -------------------ccCC-------ccccccccccccCceeeeecccccCCCccceeEEEEEEcccCCCccc---
Confidence 5554 89999999999999999999999999999999999999999999997
Q ss_pred EEEEeecCCCCcccccceeeeEEEEeeCCCCceeeeeecceeecCCCceEEEeEEecCCCCCcEEEEEEeeeccccCCCc
Q psy5085 178 LRLTLLNKSADMVKLGGLNIMEVTIIDDDDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRD 257 (319)
Q Consensus 178 v~L~~~~~~~~~~~lg~~~~a~VtI~Ddd~~g~~~F~~~~~~V~E~~g~~~v~V~R~~g~~g~v~V~~~t~dGTA~~G~D 257 (319)
|+|+||||+|.+.|..+ .|.+...|.|++|++|++.++|+|.+|||++|+|
T Consensus 312 ----------------------v~i~ddDhag~f~f~~~-------~G~~~~~v~RtsGargtv~vpy~Tv~~Ta~~~e~ 362 (596)
T KOG1306|consen 312 ----------------------VTILDDDHAGIFLFQMP-------MGAVLGEVNRTSGARGTVIVPYQTVCGTAKGGED 362 (596)
T ss_pred ----------------------eeecCCCcceeEEeecc-------ccceeeeeeeccccccceeeeeeeccCCCCCCcc
Confidence 77999999999999988 7899999999999999999999999999998844
No 3
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=99.90 E-value=3e-23 Score=161.99 Aligned_cols=90 Identities=31% Similarity=0.537 Sum_probs=87.8
Q ss_pred eeEEEEEeeeEEEecCCeEEEEEEEEeCCCCceEEEEEEEeCCCccCCCCeeeeceEEEEeCCceEEEEEEEEecCCCCC
Q psy5085 92 YAIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENETEKFVTIRIINDEKWD 171 (319)
Q Consensus 92 ~~~i~F~~~~y~V~E~~g~v~vtV~R~g~~~~~vtV~~~t~dGTA~~g~Dy~~~~gtl~F~~Get~k~i~I~IidD~i~E 171 (319)
.|.|+|+.++|+|.|+.|.+.|+|.|+|+..++++|+|.|.+|||.+|.||.+.+|+|+|+||+++|+|+|+|+||.++|
T Consensus 1 ~g~v~F~~~~~~V~E~~g~~~v~V~R~g~~~~~~~V~~~t~~gtA~~g~Dy~~~~g~l~F~~ge~~k~i~i~i~dD~~~E 80 (90)
T smart00237 1 AGTVGFEQPVYTVSESDGEVEVCVVRTGGARGTVVVPYRTEDGTATAGSDYEPVEGTLTFPPGETEKCIRIKIIDDDIYE 80 (90)
T ss_pred CeEEEECCCeEEEEECCeEEEEEEEecCCCCcEEEEEEEEcCCcCCCCCCccccceEEEECCCCEEEEEEEEEeCCCCcC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEE
Q psy5085 172 PVEEFFLRLT 181 (319)
Q Consensus 172 ~dE~F~v~L~ 181 (319)
++|+|.|+|+
T Consensus 81 ~~e~F~v~Ls 90 (90)
T smart00237 81 KDETFYVRLS 90 (90)
T ss_pred CceeEEEEeC
Confidence 9999999985
No 4
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=99.88 E-value=3.5e-22 Score=155.94 Aligned_cols=90 Identities=43% Similarity=0.641 Sum_probs=88.0
Q ss_pred CceeeeeecceeecCCCceEEEeEEecCCCCCcEEEEEEeeeccccCCCcccccceEEEEeCCeeEEEEEEEeecCCCCC
Q psy5085 208 PGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSGVITFKHGEVRRVLEIPIIDDLKPE 287 (319)
Q Consensus 208 ~g~~~F~~~~~~V~E~~g~~~v~V~R~~g~~g~v~V~~~t~dGTA~~G~DY~~~~g~l~F~~get~k~i~I~IidD~~~E 287 (319)
+|.|+|..+.|.|.|+.|.+.++|.|++++.++++|.|.|.+|||++|.||.+.+|+|+|++||++|+|+|+|+||..+|
T Consensus 1 ~g~v~F~~~~~~V~E~~g~~~v~V~R~g~~~~~~~V~~~t~~gtA~~g~Dy~~~~g~l~F~~ge~~k~i~i~i~dD~~~E 80 (90)
T smart00237 1 AGTVGFEQPVYTVSESDGEVEVCVVRTGGARGTVVVPYRTEDGTATAGSDYEPVEGTLTFPPGETEKCIRIKIIDDDIYE 80 (90)
T ss_pred CeEEEECCCeEEEEECCeEEEEEEEecCCCCcEEEEEEEEcCCcCCCCCCccccceEEEECCCCEEEEEEEEEeCCCCcC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEe
Q psy5085 288 KDEYFEVKLS 297 (319)
Q Consensus 288 ~dE~F~v~L~ 297 (319)
.+|+|.|.|+
T Consensus 81 ~~e~F~v~Ls 90 (90)
T smart00237 81 KDETFYVRLS 90 (90)
T ss_pred CceeEEEEeC
Confidence 9999999984
No 5
>PF03160 Calx-beta: Calx-beta domain; InterPro: IPR003644 The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells. This motif overlaps domains used for calcium binding and regulation. The calx-beta motif is also present in the cytoplasmic tail of mammalian integrin-beta4, which mediates the bi-directional transfer of signals across the plasma membrane, as well as in some cyanobacterial proteins. This motif contains a series of beta-strands and turns that form a self-contained beta-sheet [, ].; GO: 0007154 cell communication, 0016021 integral to membrane; PDB: 3H6A_B 3FSO_A 3FQ4_B 2DPK_A 2QVM_A 3GIN_B 2QVK_A 2FWU_A 2FWS_A 3E9U_A ....
Probab=99.87 E-value=2.5e-21 Score=153.47 Aligned_cols=99 Identities=47% Similarity=0.772 Sum_probs=86.9
Q ss_pred eEEEEeeCCCCceeeeeecceeecCCCceEEEeEEecCCC-CCcEEEEEEeeeccccCCCcccccceEEEEeCCeeEEEE
Q psy5085 198 MEVTIIDDDDPGIIQFEKRGYLVKESSGVVAIPILRTSGS-DGDVSVKWKTVDKTAISSRDYKGGSGVITFKHGEVRRVL 276 (319)
Q Consensus 198 a~VtI~Ddd~~g~~~F~~~~~~V~E~~g~~~v~V~R~~g~-~g~v~V~~~t~dGTA~~G~DY~~~~g~l~F~~get~k~i 276 (319)
|+|+|+|+|.+ .++|..+.|.+.|+.|.+.++|.|+++. .+.+.|.|.+.+|+|+.|.||...+++|+|++|++++++
T Consensus 1 atvtI~d~d~~-~v~f~~~~~~v~E~~~~~~v~V~~~~~~~~~~v~v~~~~~~gtA~~~~Dy~~~~~~v~f~~g~t~~~i 79 (100)
T PF03160_consen 1 ATVTILDDDDP-TVSFSSPSYTVSEGDGTVTVTVTRSGGSLDGPVTVNYSTVDGTATAGSDYSPTSGTVTFPPGETSKTI 79 (100)
T ss_dssp EEEEEE-TTSE-EEEESSSEEEEETTSSEEEEEEEEESS-TSSEEEEEEEEEESSSETTTSBE--EEEEEE-TT-SEEEE
T ss_pred CEEEEECCCCC-EEEEeCCEEEEEeCCCEEEEEEEEcccCCCcceEEEEEEeCCccccccccccceeEEEECCCCeEEEE
Confidence 68999999988 9999999999999999999999999886 899999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCCeEEEEEEe
Q psy5085 277 EIPIIDDLKPEKDEYFEVKLS 297 (319)
Q Consensus 277 ~I~IidD~~~E~dE~F~v~L~ 297 (319)
.|.|++|.++|++|+|.|.|+
T Consensus 80 ~i~i~dD~~~E~~E~F~v~Ls 100 (100)
T PF03160_consen 80 NITIIDDDIPEGDETFTVRLS 100 (100)
T ss_dssp EEEB---SSTTSSEEEEEEEE
T ss_pred EEEEeCCCCcCCceEEEEEEC
Confidence 999999999999999999985
No 6
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=99.86 E-value=1.5e-21 Score=203.07 Aligned_cols=116 Identities=38% Similarity=0.533 Sum_probs=108.9
Q ss_pred eCCCCceeeeeecceeecCCCceEEEeEEecCCC-CCcEEEEEEeeeccccCCCcccccceEEEEeCCeeEEEEEEEeec
Q psy5085 204 DDDDPGIIQFEKRGYLVKESSGVVAIPILRTSGS-DGDVSVKWKTVDKTAISSRDYKGGSGVITFKHGEVRRVLEIPIID 282 (319)
Q Consensus 204 Ddd~~g~~~F~~~~~~V~E~~g~~~v~V~R~~g~-~g~v~V~~~t~dGTA~~G~DY~~~~g~l~F~~get~k~i~I~Iid 282 (319)
+||..+.+.|+++.|.|.|++|++.++|.|++|. .++++|.|+|.||||.+|.||...+|+|+|++||++|+|+|.|+|
T Consensus 395 ~dd~~s~i~Fe~~~Y~V~En~GtV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~~~sGTLtF~PGEt~KtItV~IID 474 (928)
T TIGR00845 395 ENDPVSKIFFEPGHYTCLENCGTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFTEGTLVFKPGETQKEFRIGIID 474 (928)
T ss_pred ccCCcceEEecCCeEEEeecCcEEEEEEEEccCCCCceEEEEEEccCCccCCCCCccccCceEEECCCceEEEEEEEEcc
Confidence 4566799999999999999999999999999865 678999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEEEeCCCCC--------------eeeeccceEEEEEeCCC
Q psy5085 283 DLKPEKDEYFEVKLSEPTGG--------------AKIGVVNHCAVTITNDD 319 (319)
Q Consensus 283 D~~~E~dE~F~v~L~~p~g~--------------~~lG~~~~~~VtI~ddd 319 (319)
|+++|.||+|+|.|++|+++ +.||.++.++|||.|||
T Consensus 475 Ddi~E~DE~F~V~LSNp~~g~~~G~~~~~~~~~~A~Lg~ps~ATVTIlDDD 525 (928)
T TIGR00845 475 DDIFEEDEHFYVRLSNLRVGSEDGILEANHVSAVAQLASPNTATVTILDDD 525 (928)
T ss_pred CCCCCCCceEEEEEeCCCCCCcccccccccccccceecCCceEEEEEecCc
Confidence 99999999999999999743 67999999999999997
No 7
>PF03160 Calx-beta: Calx-beta domain; InterPro: IPR003644 The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells. This motif overlaps domains used for calcium binding and regulation. The calx-beta motif is also present in the cytoplasmic tail of mammalian integrin-beta4, which mediates the bi-directional transfer of signals across the plasma membrane, as well as in some cyanobacterial proteins. This motif contains a series of beta-strands and turns that form a self-contained beta-sheet [, ].; GO: 0007154 cell communication, 0016021 integral to membrane; PDB: 3H6A_B 3FSO_A 3FQ4_B 2DPK_A 2QVM_A 3GIN_B 2QVK_A 2FWU_A 2FWS_A 3E9U_A ....
Probab=99.81 E-value=3e-19 Score=141.57 Aligned_cols=88 Identities=32% Similarity=0.500 Sum_probs=78.2
Q ss_pred EEEEEeeeEEEecCCeEEEEEEEEeCC-CCceEEEEEEEeCCCccCCCCeeeeceEEEEeCCceEEEEEEEEecCCCCCC
Q psy5085 94 IIEFHAVTVAVREDIGSFKVGILRHGN-LQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENETEKFVTIRIINDEKWDP 172 (319)
Q Consensus 94 ~i~F~~~~y~V~E~~g~v~vtV~R~g~-~~~~vtV~~~t~dGTA~~g~Dy~~~~gtl~F~~Get~k~i~I~IidD~i~E~ 172 (319)
.|+|++..|+|.|+.|.+.++|.|.++ +..+++|.|.+.+|+|.+|.||.+.+++|+|+||++.+++.|.|+||.++|+
T Consensus 12 ~v~f~~~~~~v~E~~~~~~v~V~~~~~~~~~~v~v~~~~~~gtA~~~~Dy~~~~~~v~f~~g~t~~~i~i~i~dD~~~E~ 91 (100)
T PF03160_consen 12 TVSFSSPSYTVSEGDGTVTVTVTRSGGSLDGPVTVNYSTVDGTATAGSDYSPTSGTVTFPPGETSKTINITIIDDDIPEG 91 (100)
T ss_dssp EEEESSSEEEEETTSSEEEEEEEEESS-TSSEEEEEEEEEESSSETTTSBE--EEEEEE-TT-SEEEEEEEB---SSTTS
T ss_pred EEEEeCCEEEEEeCCCEEEEEEEEcccCCCcceEEEEEEeCCccccccccccceeEEEECCCCeEEEEEEEEeCCCCcCC
Confidence 999999999999999999999999954 5899999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEE
Q psy5085 173 VEEFFLRLT 181 (319)
Q Consensus 173 dE~F~v~L~ 181 (319)
+|+|.|+|+
T Consensus 92 ~E~F~v~Ls 100 (100)
T PF03160_consen 92 DETFTVRLS 100 (100)
T ss_dssp SEEEEEEEE
T ss_pred ceEEEEEEC
Confidence 999999996
No 8
>KOG1306|consensus
Probab=98.65 E-value=2.1e-08 Score=97.84 Aligned_cols=97 Identities=30% Similarity=0.353 Sum_probs=70.7
Q ss_pred eeeecceeecCCCceEEEeE----EecCCCCCcEEE-------EEEeeeccccCCCcccccceEEEEeCCeeEEEEEEEe
Q psy5085 212 QFEKRGYLVKESSGVVAIPI----LRTSGSDGDVSV-------KWKTVDKTAISSRDYKGGSGVITFKHGEVRRVLEIPI 280 (319)
Q Consensus 212 ~F~~~~~~V~E~~g~~~v~V----~R~~g~~g~v~V-------~~~t~dGTA~~G~DY~~~~g~l~F~~get~k~i~I~I 280 (319)
.|....|.|.+.....++.+ +|..-.+|...= .|+|+||+|.+|.||...+|+|.|+||+++|+++|.|
T Consensus 222 ~~d~A~y~V~~~~~ksrafyriqaTr~m~gsg~~~r~d~r~g~~y~TedgsA~AgtDyv~~egtl~F~PG~~~q~~~V~I 301 (596)
T KOG1306|consen 222 EVDEAEYHVLESQRKSRAFYRIQATRLMQGSGNAVRTDERDGGDYKTEDGSAEAGTDYVGIEGTLDFAPGVRMQTFQVGI 301 (596)
T ss_pred hhhHHHHHHHhhhhhceeeEEeeeeeccccccceeeeccccCCccccccccccccCceeeeecccccCCCccceeEEEEE
Confidence 33447888888765444443 333333444433 7999999999999999999999999999999999999
Q ss_pred ecCCCCCCCe--------EEEEEEeCCCCCeeeeccc
Q psy5085 281 IDDLKPEKDE--------YFEVKLSEPTGGAKIGVVN 309 (319)
Q Consensus 281 idD~~~E~dE--------~F~v~L~~p~g~~~lG~~~ 309 (319)
+||.++|.|| .+.+.+..|- |+.++...
T Consensus 302 iDddife~dEv~i~ddDhag~f~f~~~~-G~~~~~v~ 337 (596)
T KOG1306|consen 302 IDDDIFEEDEVTILDDDHAGIFLFQMPM-GAVLGEVN 337 (596)
T ss_pred EcccCCCccceeecCCCcceeEEeeccc-cceeeeee
Confidence 9999999766 4455555553 44554433
No 9
>KOG4289|consensus
Probab=91.81 E-value=15 Score=41.82 Aligned_cols=202 Identities=15% Similarity=0.280 Sum_probs=109.4
Q ss_pred EEEeeeE--EEecCCe--EEEEEEEEe-CCCCceEEEEEEEeCCCccCCCCee-eeceEEEEeCCceEEEEEEEEecCCC
Q psy5085 96 EFHAVTV--AVREDIG--SFKVGILRH-GNLQNIARVRVDSIDGSAKQGKRYQ-KVNQTVVFKENETEKFVTIRIINDEK 169 (319)
Q Consensus 96 ~F~~~~y--~V~E~~g--~v~vtV~R~-g~~~~~vtV~~~t~dGTA~~g~Dy~-~~~gtl~F~~Get~k~i~I~IidD~i 169 (319)
.|+...| +|.|+.+ ++.++|+-+ .+-.....|.|....|++..+ =|. ...|.| .++.---
T Consensus 373 qFse~~Yvvqv~Edvt~~avvlrV~AtDrD~g~Ng~VHYsi~Sgn~~G~-f~id~~tGel-------------~vv~plD 438 (2531)
T KOG4289|consen 373 QFSEKRYVVQVREDVTPPAVVLRVTATDRDKGTNGKVHYSIASGNGRGQ-FYIDSLTGEL-------------DVVEPLD 438 (2531)
T ss_pred cccccceEEEecccCCCCceEEEEEecccCCCcCceEEEEeeccCcccc-EEEecccceE-------------EEecccc
Confidence 4666666 5689864 677888766 555667788999888886532 222 122333 2233223
Q ss_pred CCCceEEEEEEEeecCCCCcccccceeeeEEEEee-CCCCceeeeeecceeecCCC--ceEEEeEEecCCCCCc-EEEEE
Q psy5085 170 WDPVEEFFLRLTLLNKSADMVKLGGLNIMEVTIID-DDDPGIIQFEKRGYLVKESS--GVVAIPILRTSGSDGD-VSVKW 245 (319)
Q Consensus 170 ~E~dE~F~v~L~~~~~~~~~~~lg~~~~a~VtI~D-dd~~g~~~F~~~~~~V~E~~--g~~~v~V~R~~g~~g~-v~V~~ 245 (319)
+|.. .+.+++..+.+.. |. |.+.+-..|.++| +||+++|-=..-..+|.|+. |...+.|.-.+.-.|+ ..+.|
T Consensus 439 ~e~~-~ytl~IrAqDggr-Pp-Lsn~sgl~iqVlDINDhaPifvstpfq~tvlEnv~lg~~v~~vqaidadsg~na~l~y 515 (2531)
T KOG4289|consen 439 FENS-EYTLRIRAQDGGR-PP-LSNTSGLVIQVLDINDHAPIFVSTPFQATVLENVPLGYLVCHVQAIDADSGENARLHY 515 (2531)
T ss_pred ccCC-eeEEEEEcccCCC-CC-ccCCCceEEEEEecCCCCceeEechhhhhhhhcccccceEEEEecccCCCCcccceee
Confidence 4544 6788887444432 11 4444444477776 67778776666677888875 5665666554444443 45556
Q ss_pred Eeeeccc-------------cCCCcccccc----eEEEEeCC----eeEEEEEEEe--ecCCCCCC-CeEEEEEEeCCCC
Q psy5085 246 KTVDKTA-------------ISSRDYKGGS----GVITFKHG----EVRRVLEIPI--IDDLKPEK-DEYFEVKLSEPTG 301 (319)
Q Consensus 246 ~t~dGTA-------------~~G~DY~~~~----g~l~F~~g----et~k~i~I~I--idD~~~E~-dE~F~v~L~~p~g 301 (319)
+.. |.+ ..--||+... |..-=..| .++..|.|+. ++|..++- ..++.++|.+..
T Consensus 516 ~la-G~~pf~I~~~SG~Itvtk~ldrEt~~~ysl~V~ard~gtp~l~tstsI~Vtv~dvndndP~Ft~~eytl~inED~- 593 (2531)
T KOG4289|consen 516 SLA-GVGPFQINNGSGWITVTKELDRETVEHYSLGVEARDHGTPPLSTSTSISVTVLDVNDNDPTFTQKEYTLRINEDA- 593 (2531)
T ss_pred eec-cCCCeeEecCCceEEEeecccccccceEEEEEEEcCCCCCcccccceEEEEecccCCCCCccccCceEEEecCCc-
Confidence 543 322 1223554421 11111111 2234555544 45555554 467788887643
Q ss_pred CeeeeccceEEEEEeCCC
Q psy5085 302 GAKIGVVNHCAVTITNDD 319 (319)
Q Consensus 302 ~~~lG~~~~~~VtI~ddd 319 (319)
-+|. +-.+|+-.|.|
T Consensus 594 --pvgs-SI~tvtAvD~d 608 (2531)
T KOG4289|consen 594 --PVGS-SIVTVTAVDRD 608 (2531)
T ss_pred --cccc-eEEEEEEeccc
Confidence 3442 44566655543
No 10
>KOG4289|consensus
Probab=84.85 E-value=23 Score=40.35 Aligned_cols=141 Identities=17% Similarity=0.257 Sum_probs=77.2
Q ss_pred EEEeeeE--EEecC--CeEEEEEEEEe-CCCCceEEEEEEEeCCCccCCCCeeeeceEEEEeCCceEEEEEEEEecCCCC
Q psy5085 96 EFHAVTV--AVRED--IGSFKVGILRH-GNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENETEKFVTIRIINDEKW 170 (319)
Q Consensus 96 ~F~~~~y--~V~E~--~g~v~vtV~R~-g~~~~~vtV~~~t~dGTA~~g~Dy~~~~gtl~F~~Get~k~i~I~IidD~i~ 170 (319)
-|+..+| ++.|| .|.-.++|.-+ |+..-...+.|+-..|.|..--...+.+|.+.-.+ .+| .
T Consensus 268 vFEq~~Y~e~lREn~evGy~vLtvrAtD~Dsp~Nani~Yrl~eg~~~~~f~in~rSGvI~T~a----------~lD---R 334 (2531)
T KOG4289|consen 268 VFEQDEYREELRENLEVGYEVLTVRATDGDSPPNANIRYRLLEGNAKNVFEINPRSGVISTRA----------PLD---R 334 (2531)
T ss_pred ccchhHHHHHHhhccccCceEEEEEeccCCCCCCCceEEEecCCCccceeEEcCccceeeccC----------ccC---H
Confidence 4777777 46676 35555777644 77777888999988886654333334455443221 122 3
Q ss_pred CCceEEEEEEEeecCCCCcccccceeeeEEEE--ee-CCCCceeeeeecce--eecCCC--ceEEEeEEecCCCC-CcEE
Q psy5085 171 DPVEEFFLRLTLLNKSADMVKLGGLNIMEVTI--ID-DDDPGIIQFEKRGY--LVKESS--GVVAIPILRTSGSD-GDVS 242 (319)
Q Consensus 171 E~dE~F~v~L~~~~~~~~~~~lg~~~~a~VtI--~D-dd~~g~~~F~~~~~--~V~E~~--g~~~v~V~R~~g~~-g~v~ 242 (319)
|+-|.+.+....+.-... -|. .+|.|-| .| +|.++. |++..| .|.|+. +.+.+.|.-+.--. ..-.
T Consensus 335 E~~~~y~L~VeAsDqG~~---pgp-~Ta~V~itV~D~NDNaPq--Fse~~Yvvqv~Edvt~~avvlrV~AtDrD~g~Ng~ 408 (2531)
T KOG4289|consen 335 EELESYQLDVEASDQGRP---PGP-RTAMVEITVEDENDNAPQ--FSEKRYVVQVREDVTPPAVVLRVTATDRDKGTNGK 408 (2531)
T ss_pred HhhhheEEEEEeccCCCC---CCC-ceEEEEEEEEecCCCCcc--ccccceEEEecccCCCCceEEEEEecccCCCcCce
Confidence 555666655552211111 222 3455544 44 344554 555554 667875 35556665442221 1245
Q ss_pred EEEEeeeccccCC
Q psy5085 243 VKWKTVDKTAISS 255 (319)
Q Consensus 243 V~~~t~dGTA~~G 255 (319)
|.|+...|++.++
T Consensus 409 VHYsi~Sgn~~G~ 421 (2531)
T KOG4289|consen 409 VHYSIASGNGRGQ 421 (2531)
T ss_pred EEEEeeccCcccc
Confidence 6787777777554
No 11
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=77.73 E-value=34 Score=27.31 Aligned_cols=85 Identities=11% Similarity=0.104 Sum_probs=54.1
Q ss_pred EEEEeeeEEEecCCeEEEEEEEEeCCCCceEEEEEEEeCC--CccCCCCeeeeceEEEEeCCceEEEEEEEEecCCCCCC
Q psy5085 95 IEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDG--SAKQGKRYQKVNQTVVFKENETEKFVTIRIINDEKWDP 172 (319)
Q Consensus 95 i~F~~~~y~V~E~~g~v~vtV~R~g~~~~~vtV~~~t~dG--TA~~g~Dy~~~~gtl~F~~Get~k~i~I~IidD~i~E~ 172 (319)
|..++..+.+.++.....++|.-.++..-.+.+...-.++ ......+|....-.+.++||+. +.|.| +..+.....
T Consensus 2 i~i~~trii~~~~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~-q~vRv-~~~~~~~~~ 79 (122)
T PF00345_consen 2 IQISPTRIIFNESQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGES-QTVRV-YRGSKLPID 79 (122)
T ss_dssp EEESSSEEEEETTSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEE-EEEEE-EECSGS-SS
T ss_pred EEEccEEEEEeCCCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCc-EEEEE-EecCCCCCC
Confidence 4556677777887788888887666544444444433111 1222347888888999999987 67888 666665544
Q ss_pred -ceEEEEEEE
Q psy5085 173 -VEEFFLRLT 181 (319)
Q Consensus 173 -dE~F~v~L~ 181 (319)
...|+|.+.
T Consensus 80 ~E~~yrl~~~ 89 (122)
T PF00345_consen 80 RESLYRLSFR 89 (122)
T ss_dssp S-EEEEEEEE
T ss_pred ceEEEEEEEE
Confidence 446777777
No 12
>PF08522 DUF1735: Domain of unknown function (DUF1735); InterPro: IPR013728 This domain of unknown function is found in a number of bacterial proteins including acylhydrolases.; PDB: 3POH_A 4DQA_A 3SOT_D 3NQK_A 3N91_A 3P02_A.
Probab=62.50 E-value=23 Score=26.63 Aligned_cols=40 Identities=35% Similarity=0.459 Sum_probs=32.8
Q ss_pred eeeeceEEEEeCCceEEEEEEEEecCCCCCCceEEEEEEE
Q psy5085 142 YQKVNQTVVFKENETEKFVTIRIINDEKWDPVEEFFLRLT 181 (319)
Q Consensus 142 y~~~~gtl~F~~Get~k~i~I~IidD~i~E~dE~F~v~L~ 181 (319)
|.....+++|++|+....+.|.+..+...+.+..|.|=|+
T Consensus 35 y~l~~~~~~i~aG~~~s~~~i~~~~~~~l~~~~~Y~LPv~ 74 (86)
T PF08522_consen 35 YTLPNKTVTIPAGETYSTVKITFKPDEKLDPDKKYVLPVR 74 (86)
T ss_dssp EEESSSEEEEETTCSEEEEEEEEEHTSTCGTTSEEEEEEE
T ss_pred EEEcCCEEEEcCCCEEEEEEEEEEeCcCCCCCCEEEEEEE
Confidence 4444569999999999889999998877777888877777
No 13
>KOG1219|consensus
Probab=59.47 E-value=4.3e+02 Score=32.83 Aligned_cols=134 Identities=20% Similarity=0.225 Sum_probs=67.5
Q ss_pred EEEeeeEE-EecCCeEEEEEEEEe-CCCCceEEEEEEEeCCCccCCCCeeeeceEEEEeCCceEEEEEEEEecCCCCCCc
Q psy5085 96 EFHAVTVA-VREDIGSFKVGILRH-GNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENETEKFVTIRIINDEKWDPV 173 (319)
Q Consensus 96 ~F~~~~y~-V~E~~g~v~vtV~R~-g~~~~~vtV~~~t~dGTA~~g~Dy~~~~gtl~F~~Get~k~i~I~IidD~i~E~d 173 (319)
-|..+.|. +.|..-++.-+|.-. -...-...|.|...+|-- ..-++.|.-|+ |.+.+-=|-.-+..
T Consensus 2077 vF~~~~y~avi~e~~tv~spvv~vqa~s~l~~kv~YsIldg~~--------slFtvnf~TG~----i~v~~pLd~ea~t~ 2144 (4289)
T KOG1219|consen 2077 VFITPDYVAVIEELITVSSPVVHVQAASPLGLKVTYSILDGNT--------SLFTVNFTTGV----ILVLIPLDREASTL 2144 (4289)
T ss_pred ceecCcEEEEeecccccccceeEEeecCCcCCceEEEEecCCc--------ceEEEecccce----EEeccccccccccc
Confidence 46666664 333333443333222 111222337777777541 12356665554 44444335555566
Q ss_pred eEEEEEEEeecCCCCcccccceeeeEEEEeeC---CCCceeeeeecceeecCCC--ceEEEeEEecCCCCCcEEEEEEee
Q psy5085 174 EEFFLRLTLLNKSADMVKLGGLNIMEVTIIDD---DDPGIIQFEKRGYLVKESS--GVVAIPILRTSGSDGDVSVKWKTV 248 (319)
Q Consensus 174 E~F~v~L~~~~~~~~~~~lg~~~~a~VtI~Dd---d~~g~~~F~~~~~~V~E~~--g~~~v~V~R~~g~~g~v~V~~~t~ 248 (319)
-.|.|+-. ... +|.-..++|-|+-+ |++++|+-..-..+.+|+. |+-.+.+.-+ ..+..-.+.|+..
T Consensus 2145 h~l~ieAt--d~~-----~p~~Aea~VeIiV~dIndn~PvFeqlsYt~sisE~s~igt~viqilAT-dsDsn~~isYsl~ 2216 (4289)
T KOG1219|consen 2145 HELLIEAT--DAG-----IPLSAEAKVEIIVGDINDNPPVFEQLSYTISISENSKIGTKVIQILAT-DSDSNREISYSLE 2216 (4289)
T ss_pred eEEEEEEe--ccC-----CCcceeeEEEEEecccCCCCchhheeeEEEEccCCCccCceEEEEEec-cCCCCCceEEEee
Confidence 66776666 222 45556677777643 4566655554455667764 4444555433 2223455666665
Q ss_pred e
Q psy5085 249 D 249 (319)
Q Consensus 249 d 249 (319)
.
T Consensus 2217 g 2217 (4289)
T KOG1219|consen 2217 G 2217 (4289)
T ss_pred c
Confidence 3
No 14
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=48.19 E-value=2.3e+02 Score=26.29 Aligned_cols=124 Identities=14% Similarity=0.073 Sum_probs=62.4
Q ss_pred CeEEEEEEEEeCCCCceEEEEEEEeCCCccCCCCeee-------------eceEEEEeCCceEEEEEEEEecCCCCC---
Q psy5085 108 IGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQK-------------VNQTVVFKENETEKFVTIRIINDEKWD--- 171 (319)
Q Consensus 108 ~g~v~vtV~R~g~~~~~vtV~~~t~dGTA~~g~Dy~~-------------~~gtl~F~~Get~k~i~I~IidD~i~E--- 171 (319)
.-.+.+++.+-....+.++|++...+|.+-.+.++.. ..+.++|+.|+.-..+.+++..|.-..
T Consensus 24 ~~~v~~~~~~vd~~~~~l~v~v~v~P~~~l~d~~~~~l~~dltv~v~s~~~~~~l~~~~g~~~~~~~v~~~~~G~~~~yP 103 (256)
T PF14494_consen 24 RVDVQVTLEQVDPVNNELSVRVLVIPGGSLLDARGGVLAEDLTVRVSSSTGLGDLTFPAGDRPATFDVTLVADGDINNYP 103 (256)
T ss_pred ceEEEEEEEEeeccccEEEEEEEEecCcccccCCCCccCCCeEEEEEeCCCccceEecCCCcCcceeeEEEecCCccCCC
Confidence 3345566665566666666666655544433332111 147899999999777777766543322
Q ss_pred CceEE-E-EEEE-eecCCCCcccccceeeeEEEEeeCCCCceeeeeecceeecCCCceEEEeEEecCCC
Q psy5085 172 PVEEF-F-LRLT-LLNKSADMVKLGGLNIMEVTIIDDDDPGIIQFEKRGYLVKESSGVVAIPILRTSGS 237 (319)
Q Consensus 172 ~dE~F-~-v~L~-~~~~~~~~~~lg~~~~a~VtI~Ddd~~g~~~F~~~~~~V~E~~g~~~v~V~R~~g~ 237 (319)
-|+.. . +++. ..++.. -..+..+.|++.+... -+.+......-.+....+.+.+.|+.+.
T Consensus 104 FD~Y~~~~i~v~~~~g~~~----~~~~~p~~v~~~~s~~--gW~i~~~~~~~~~~~~~~~i~l~Rs~~~ 166 (256)
T PF14494_consen 104 FDRYRTDPIRVSAFVGNGD----NREPVPARVTLTGSLS--GWDISATRVADADGGDGVDITLKRSRGV 166 (256)
T ss_pred CcccccceEEEEEEecCCC----cccccceEEEEEcccC--CeEEEeeecCCCCCceeEEEEEEccCcc
Confidence 12211 1 3333 222211 1223345666655543 2444433221222334677788887654
No 15
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=46.18 E-value=2.3e+02 Score=25.64 Aligned_cols=86 Identities=6% Similarity=-0.014 Sum_probs=59.1
Q ss_pred eeEEEEEeeeEEEecCCeEEEEEEEEeCCCCceEEE-EEEEeCCC--ccCCCCeeeeceEEEEeCCceEEEEEEEEecCC
Q psy5085 92 YAIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARV-RVDSIDGS--AKQGKRYQKVNQTVVFKENETEKFVTIRIINDE 168 (319)
Q Consensus 92 ~~~i~F~~~~y~V~E~~g~v~vtV~R~g~~~~~vtV-~~~t~dGT--A~~g~Dy~~~~gtl~F~~Get~k~i~I~IidD~ 168 (319)
.+-|.++++..-..|+....+++|.-.++. +.-| .|. .++. .....+|..+.-.....||+. +.+.|--..+.
T Consensus 18 ~A~i~l~~TRvI~~~~~~~~si~i~N~~~~--p~LvQsWv-~~~~~~~~~~~pFivtPPl~rl~p~~~-q~lRI~~~~~~ 93 (226)
T PRK15295 18 HASIVVGGTRLVFDGNNDESSINVENKDSK--ANLVQSWL-SVVDPQVTNKQAFIITPPLFRLDAGQK-NSIRVIRSGAP 93 (226)
T ss_pred cccEEeCceEEEEeCCCceeEEEEEeCCCC--cEEEEEEE-eCCCCCCCCCCCEEEcCCeEEECCCCc-eEEEEEECCCC
Confidence 356888888888888888888888655543 3333 332 2322 222357888888899999988 45766666777
Q ss_pred CCCCceE-EEEEEE
Q psy5085 169 KWDPVEE-FFLRLT 181 (319)
Q Consensus 169 i~E~dE~-F~v~L~ 181 (319)
++...|+ |++.+.
T Consensus 94 LP~DrEslf~lnv~ 107 (226)
T PRK15295 94 LPADRESMYWLNIK 107 (226)
T ss_pred CCCCceEEEEEEEE
Confidence 7877776 888887
No 16
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=44.67 E-value=2.4e+02 Score=25.53 Aligned_cols=88 Identities=13% Similarity=0.032 Sum_probs=60.3
Q ss_pred eeEEEEEeeeEEEecCCeEEEEEEEEeCCCCceEEEEEEEeCCCccCCCCeeeeceEEEEeCCceEEEEEEEEecCCCCC
Q psy5085 92 YAIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENETEKFVTIRIINDEKWD 171 (319)
Q Consensus 92 ~~~i~F~~~~y~V~E~~g~v~vtV~R~g~~~~~vtV~~~t~dGTA~~g~Dy~~~~gtl~F~~Get~k~i~I~IidD~i~E 171 (319)
..-|.++++.+-..|+...++++|.-.++..--+--.|. .++....-.+|....--..++||+. +.+.|--.++.++.
T Consensus 24 ~Agi~i~~TRvIy~~~~~~~si~l~N~~~~~~~LvQsWv-~~~~~~~~~pfivtPPlfrl~p~~~-q~lRIi~~~~~LP~ 101 (229)
T PRK15195 24 AGGIALGATRVIYPADAKQTSLAIRNSHTNERYLVNSWI-ENSSGVKEKSFIVTPPLFVSEPKSE-NTLRIIYAGPPLAA 101 (229)
T ss_pred eeeEEECCeEEEEeCCCceEEEEEEeCCCCccEEEEEEe-cCCCCCccCCEEEcCCeEEECCCCc-eEEEEEECCCCCCC
Confidence 356888888888888888888888654432223322343 3333222257888888999999988 45776666777787
Q ss_pred CceE-EEEEEE
Q psy5085 172 PVEE-FFLRLT 181 (319)
Q Consensus 172 ~dE~-F~v~L~ 181 (319)
..|+ |++.+.
T Consensus 102 DrESlf~Lnv~ 112 (229)
T PRK15195 102 DRESLFWMNVK 112 (229)
T ss_pred CeeEEEEEEee
Confidence 7675 888888
No 17
>PF08522 DUF1735: Domain of unknown function (DUF1735); InterPro: IPR013728 This domain of unknown function is found in a number of bacterial proteins including acylhydrolases.; PDB: 3POH_A 4DQA_A 3SOT_D 3NQK_A 3N91_A 3P02_A.
Probab=43.52 E-value=59 Score=24.38 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=30.6
Q ss_pred cceEEEEeCCeeEEEEEEEeecCCCCCCCeEEEE--EEeCCC
Q psy5085 261 GSGVITFKHGEVRRVLEIPIIDDLKPEKDEYFEV--KLSEPT 300 (319)
Q Consensus 261 ~~g~l~F~~get~k~i~I~IidD~~~E~dE~F~v--~L~~p~ 300 (319)
..++++|++|+..+.+.|.+..+...+.+..|.| +|.+..
T Consensus 38 ~~~~~~i~aG~~~s~~~i~~~~~~~l~~~~~Y~LPv~i~s~s 79 (86)
T PF08522_consen 38 PNKTVTIPAGETYSTVKITFKPDEKLDPDKKYVLPVRITSVS 79 (86)
T ss_dssp SSSEEEEETTCSEEEEEEEEEHTSTCGTTSEEEEEEEEEECS
T ss_pred cCCEEEEcCCCEEEEEEEEEEeCcCCCCCCEEEEEEEEEeCC
Confidence 4579999999999889999988866666677655 454444
No 18
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here
Probab=38.34 E-value=2.4e+02 Score=23.68 Aligned_cols=80 Identities=18% Similarity=0.297 Sum_probs=46.0
Q ss_pred CCCceEEEEEEEeec-CCCCcccccceeeeEEEEeeC-CCCceeeeeecceeecCCC--ceEEEeEEecCCCCC-cEEEE
Q psy5085 170 WDPVEEFFLRLTLLN-KSADMVKLGGLNIMEVTIIDD-DDPGIIQFEKRGYLVKESS--GVVAIPILRTSGSDG-DVSVK 244 (319)
Q Consensus 170 ~E~dE~F~v~L~~~~-~~~~~~~lg~~~~a~VtI~Dd-d~~g~~~F~~~~~~V~E~~--g~~~v~V~R~~g~~g-~v~V~ 244 (319)
+|....|.+.+.+.. +.. . .-.....+|.|.|- |.++.|........+.|+. |.....+.-...-.+ .-.+.
T Consensus 62 ~e~~~~~~l~v~a~D~g~~--~-~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~v~e~~~~~~~i~~~~a~D~D~~~~~~~~ 138 (199)
T cd00031 62 REEQSEYTLTVVASDGGGP--P-LSSTATVTVTVLDVNDNPPVFEQSSYEASVPENAPPGTVVGTVTATDADSGENAKLT 138 (199)
T ss_pred CcCCceEEEEEEEEECCcC--c-ceeEEEEEEEEccCCCCCCcccccceEEEEeCCCCCCCEEEEEEEEcCCCCCCccEE
Confidence 566678888887333 221 0 11335677777764 4567777667788889985 666555553321111 34567
Q ss_pred EEeeeccc
Q psy5085 245 WKTVDKTA 252 (319)
Q Consensus 245 ~~t~dGTA 252 (319)
|+...+..
T Consensus 139 y~l~~~~~ 146 (199)
T cd00031 139 YSILSGND 146 (199)
T ss_pred EEEeCCCC
Confidence 76655443
No 19
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=34.19 E-value=3.7e+02 Score=24.57 Aligned_cols=86 Identities=12% Similarity=0.093 Sum_probs=58.2
Q ss_pred eeEEEEEeeeEEEecCCeEEEEEEEEeCCCCceEEEE-EEEeCCCcc--C---CCCeeeeceEEEEeCCceEEEEEEEEe
Q psy5085 92 YAIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVR-VDSIDGSAK--Q---GKRYQKVNQTVVFKENETEKFVTIRII 165 (319)
Q Consensus 92 ~~~i~F~~~~y~V~E~~g~v~vtV~R~g~~~~~vtV~-~~t~dGTA~--~---g~Dy~~~~gtl~F~~Get~k~i~I~Ii 165 (319)
..-|.++++.+...|+...++|+|.-.++. +.-|. |. .+|... + ..+|....--....||+. +.+.|--.
T Consensus 24 ~A~i~l~~TRvI~~~~~~~~sv~l~N~~~~--p~LvQ~Wv-d~~~~~~~p~~~~~pfivtPPl~rl~p~~~-q~lRIi~~ 99 (246)
T PRK09926 24 IADIVISGTRIIYKSDQKDVNVRLENKGNN--PLLVQSWL-DTGDDNAEPGSIKVPFTATPPVSRIDPKRG-QTIKLMYT 99 (246)
T ss_pred eeeEEeCceEEEEeCCCceEEEEEEeCCCC--cEEEEEEe-cCCCCccCccccCCCEEEcCCeEEECCCCc-cEEEEEeC
Confidence 456888888888888888888898655543 33332 33 343321 1 136888888888999887 46666556
Q ss_pred cC-CCCCCceE-EEEEEE
Q psy5085 166 ND-EKWDPVEE-FFLRLT 181 (319)
Q Consensus 166 dD-~i~E~dE~-F~v~L~ 181 (319)
.+ .++...|+ |++.+.
T Consensus 100 ~~~~lP~DrESlf~lnv~ 117 (246)
T PRK09926 100 ASTALPKDRESVFWFNVL 117 (246)
T ss_pred CCCCCCCCceEEEEEEee
Confidence 65 67777775 888887
No 20
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=33.36 E-value=3.6e+02 Score=24.26 Aligned_cols=87 Identities=10% Similarity=0.075 Sum_probs=59.0
Q ss_pred eeEEEEEeeeEEEecCCeEEEEEEEEeCCCCceEEE-EEEEeCCCc--cCCCCeeeeceEEEEeCCceEEEEEEEEecCC
Q psy5085 92 YAIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARV-RVDSIDGSA--KQGKRYQKVNQTVVFKENETEKFVTIRIINDE 168 (319)
Q Consensus 92 ~~~i~F~~~~y~V~E~~g~v~vtV~R~g~~~~~vtV-~~~t~dGTA--~~g~Dy~~~~gtl~F~~Get~k~i~I~IidD~ 168 (319)
.+-|.++++..-..|+...++++|.-.++. +..| .|...++.. ....+|....--..+.||+. +.+.|--..+.
T Consensus 21 ~a~i~l~~TRvi~~~~~~~~sl~l~N~~~~--p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~-q~lRI~~~~~~ 97 (227)
T PRK15299 21 AAGINIGTTRVIFHGDAKDASISISNSDNV--PYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQK-NVLRIIRTGGN 97 (227)
T ss_pred eeeEEECceEEEEeCCCcEEEEEEEeCCCC--cEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCc-cEEEEEECCCC
Confidence 366888888888888888888888544542 4444 343222111 12357888888899999987 46666666666
Q ss_pred CCCCceE-EEEEEE
Q psy5085 169 KWDPVEE-FFLRLT 181 (319)
Q Consensus 169 i~E~dE~-F~v~L~ 181 (319)
.+...|+ |+|.+.
T Consensus 98 lP~DrEslf~lnv~ 111 (227)
T PRK15299 98 LPEDRESLYWLDIK 111 (227)
T ss_pred CCCcceEEEEEEeE
Confidence 7777775 888888
No 21
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=33.26 E-value=2.4e+02 Score=22.23 Aligned_cols=82 Identities=12% Similarity=0.209 Sum_probs=47.1
Q ss_pred eeecceeecCCCceEEEeEEecCCCCCcEEEEEEeeec----cccCCCcccccceEEEEeCCeeEEEEEEEeecCCCCC-
Q psy5085 213 FEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDK----TAISSRDYKGGSGVITFKHGEVRRVLEIPIIDDLKPE- 287 (319)
Q Consensus 213 F~~~~~~V~E~~g~~~v~V~R~~g~~g~v~V~~~t~dG----TA~~G~DY~~~~g~l~F~~get~k~i~I~IidD~~~E- 287 (319)
+....+.+.++...+.+.|.=.+. .+..+..+..++ ......+|.-..-.+..++|+. +.+.| +..+..+.
T Consensus 4 i~~trii~~~~~~~~~i~v~N~~~--~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~-q~vRv-~~~~~~~~~ 79 (122)
T PF00345_consen 4 ISPTRIIFNESQRSASITVTNNSD--QPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGES-QTVRV-YRGSKLPID 79 (122)
T ss_dssp ESSSEEEEETTSSEEEEEEEESSS--SEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEE-EEEEE-EECSGS-SS
T ss_pred EccEEEEEeCCCCEEEEEEEcCCC--CcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCc-EEEEE-EecCCCCCC
Confidence 344455556666666666654443 444444444431 1112236666778888899988 78888 66666444
Q ss_pred CCeEEEEEEeC
Q psy5085 288 KDEYFEVKLSE 298 (319)
Q Consensus 288 ~dE~F~v~L~~ 298 (319)
....|+|.+..
T Consensus 80 ~E~~yrl~~~~ 90 (122)
T PF00345_consen 80 RESLYRLSFRE 90 (122)
T ss_dssp S-EEEEEEEEE
T ss_pred ceEEEEEEEEE
Confidence 45667777764
No 22
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=27.94 E-value=2.4e+02 Score=22.45 Aligned_cols=70 Identities=14% Similarity=0.132 Sum_probs=0.0
Q ss_pred eeEEEEEeeeEEEecCCeEEEEEEEEeCCCCceEEEEEE--------EeCCCccCCCCeeeece-EEEEeCCceEEEEEE
Q psy5085 92 YAIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVD--------SIDGSAKQGKRYQKVNQ-TVVFKENETEKFVTI 162 (319)
Q Consensus 92 ~~~i~F~~~~y~V~E~~g~v~vtV~R~g~~~~~vtV~~~--------t~dGTA~~g~Dy~~~~g-tl~F~~Get~k~i~I 162 (319)
+|.+.+......++++-..++|.|+-+|+-.--+-=.|. ..|=.+.-|--..-.+| .+.|.||++ +++++
T Consensus 3 PGei~~~~~~I~lN~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~-k~V~L 81 (101)
T cd00407 3 PGEIILKEGDIELNAGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEE-KEVEL 81 (101)
T ss_pred CceEEeCCCCeEeCCCCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCe-EEEEE
No 23
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=27.74 E-value=4.7e+02 Score=23.76 Aligned_cols=87 Identities=10% Similarity=0.084 Sum_probs=58.5
Q ss_pred eEEEEEeeeEEEecCCeEEEEEEEEeCCCCceEEEEEEEeCCCccCCCCeeeeceEEEEeCCceEEEEEEEEecCCCCCC
Q psy5085 93 AIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENETEKFVTIRIINDEKWDP 172 (319)
Q Consensus 93 ~~i~F~~~~y~V~E~~g~v~vtV~R~g~~~~~vtV~~~t~dGTA~~g~Dy~~~~gtl~F~~Get~k~i~I~IidD~i~E~ 172 (319)
+-|.++.+.+...|+...++++|.-.++..--+.-.|. .++......+|..+.--..+.||+. +.+.|--..+..+..
T Consensus 27 Agi~l~~TRvIy~~~~~~~sv~i~N~~~~~p~LvQsWv-~~~~~~~~~pFivtPPlfrl~~~~~-~~lRI~~~~~~lP~D 104 (228)
T PRK15188 27 GGIALGATRVIYPQGSKQTSLPIINSSASNVFLIQSWV-ANADGSRSTDFIITPPLFVIQPKKE-NILRIMYVGPSLPTD 104 (228)
T ss_pred ceEEECcEEEEEcCCCceEEEEEEeCCCCccEEEEEEE-ecCCCCccCCEEEcCCeEEECCCCc-eEEEEEECCCCCCCC
Confidence 56888888888888888888888654432222222343 2322222247888888888998887 567766677778777
Q ss_pred ceE-EEEEEE
Q psy5085 173 VEE-FFLRLT 181 (319)
Q Consensus 173 dE~-F~v~L~ 181 (319)
.|+ |++.+.
T Consensus 105 RESlf~lnv~ 114 (228)
T PRK15188 105 RESVFYLNSK 114 (228)
T ss_pred ceEEEEEEEE
Confidence 775 888888
No 24
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=24.37 E-value=50 Score=27.91 Aligned_cols=30 Identities=20% Similarity=0.524 Sum_probs=17.7
Q ss_pred cchhhHHHHHHHHHHhhhHHHHhcCCcceeEEEeeee
Q psy5085 2 LRLKKYYLAIFWKFIKQTTVLVNATNHTALWYQIGAV 38 (319)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sra~yri~a~ 38 (319)
.|||++|.++.. .++. +.....-||||.+-
T Consensus 27 ~RLKEEy~aLI~-Yv~~------nK~~DndWF~lesn 56 (161)
T PF08694_consen 27 QRLKEEYQALIK-YVEN------NKENDNDWFRLESN 56 (161)
T ss_dssp HHHHHHHHHHHH-HHHH------HHHTT---EEEEE-
T ss_pred HHHHHHHHHHHH-HHHh------cccccCCeEEeccC
Confidence 489999988764 2333 34457789999854
No 25
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=23.58 E-value=5.6e+02 Score=23.31 Aligned_cols=87 Identities=8% Similarity=0.055 Sum_probs=58.1
Q ss_pred eeEEEEEeeeEEEecCCeEEEEEEEEeCCCCceEEEEEEEeC-----CCc--cCCCCeeeeceEEEEeCCceEEEEEEEE
Q psy5085 92 YAIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSID-----GSA--KQGKRYQKVNQTVVFKENETEKFVTIRI 164 (319)
Q Consensus 92 ~~~i~F~~~~y~V~E~~g~v~vtV~R~g~~~~~vtV~~~t~d-----GTA--~~g~Dy~~~~gtl~F~~Get~k~i~I~I 164 (319)
.+-|.++.+.+-..|+...++|+|.-.++. +.-|.-...+ +.. .....|....-...+.||+. +.+.|--
T Consensus 21 ~Agi~l~~TRvIy~~~~k~~sv~l~N~~~~--p~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~-~~lRI~~ 97 (234)
T PRK15192 21 QAGVVIGGTRFIYHAGAPALSVPVSNHSEA--SWLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQE-NSMRVVY 97 (234)
T ss_pred EeeEEeCceEEEEcCCCceEEEEEEeCCCC--cEEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCc-eEEEEEE
Confidence 356888888888889888888888654432 3333332222 111 11235877778888888877 5777777
Q ss_pred ecCCCCCCceE-EEEEEE
Q psy5085 165 INDEKWDPVEE-FFLRLT 181 (319)
Q Consensus 165 idD~i~E~dE~-F~v~L~ 181 (319)
+.+.++..-|+ |++.+.
T Consensus 98 ~~~~LP~DRESlf~lnv~ 115 (234)
T PRK15192 98 TGAPLPADRESLFTLSIA 115 (234)
T ss_pred CCCCCCCcceEEEEEEEE
Confidence 77778877775 888887
No 26
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=23.13 E-value=5.8e+02 Score=23.29 Aligned_cols=89 Identities=9% Similarity=0.036 Sum_probs=60.5
Q ss_pred CCeeEEEEEeeeEEEecCCeEEEEEEEEeCCCCceEEEEEEEeCCCccCCCCeeeeceEEEEeCCceEEEEEEEEecCCC
Q psy5085 90 TNYAIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENETEKFVTIRIINDEK 169 (319)
Q Consensus 90 ~~~~~i~F~~~~y~V~E~~g~v~vtV~R~g~~~~~vtV~~~t~dGTA~~g~Dy~~~~gtl~F~~Get~k~i~I~IidD~i 169 (319)
...+-|..+.+.+-..|+...++|+|.-.+. .+.-|.--..++.......|.-+.-.....||+. +.+.|--..+.+
T Consensus 25 ~a~agv~l~~TRvIy~~~~k~~sl~v~N~~~--~pyLvQsWvd~~~~~~~~pFivtPPlfRlep~~~-~~lRI~~~~~~L 101 (237)
T PRK15224 25 TKSFSVKLGATRVIYHAGTAGATLSVSNPQN--YPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQ-SQLRIVRTGGDM 101 (237)
T ss_pred ceeEEEEeCceEEEEeCCCcEEEEEEEcCCC--CcEEEEEEEeCCCCCccCCEEECCCeEEECCCCc-eEEEEEECCCCC
Confidence 3456688888888888988899999964443 2333322233443333346888888888888876 566666667788
Q ss_pred CCCceE-EEEEEE
Q psy5085 170 WDPVEE-FFLRLT 181 (319)
Q Consensus 170 ~E~dE~-F~v~L~ 181 (319)
+..-|+ |++.+.
T Consensus 102 P~DRESlFwlnv~ 114 (237)
T PRK15224 102 PTDRETLQWVCIK 114 (237)
T ss_pred CCceeEEEEEEEE
Confidence 888885 888887
No 27
>PF11476 TgMIC1: Toxoplasma gondii micronemal protein 1 TgMIC1; InterPro: IPR024691 MIC1 is released as part of a complex by Toxoplasma gondii prior to invasion. The complex, which consists of MIC4-MIC1-MIC6, participates in host cell attachment and penetration, and is critical in invasion. This entry represents the C-terminal domain of MIC1, which has a galectin-like fold that interacts with and stabilises MIC6, providing a mechanism for an exit from the early secretory compartments and trafficking of the complex to micronemes [].; PDB: 2BVB_A 2K2S_A.
Probab=22.13 E-value=4.3e+02 Score=21.40 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=37.1
Q ss_pred CCceEEEEEEE-eecCCCCcccccceeeeEEEEeeCCCCceeeeeec------ceeecCCCceEEEeEEecCCCCCcEEE
Q psy5085 171 DPVEEFFLRLT-LLNKSADMVKLGGLNIMEVTIIDDDDPGIIQFEKR------GYLVKESSGVVAIPILRTSGSDGDVSV 243 (319)
Q Consensus 171 E~dE~F~v~L~-~~~~~~~~~~lg~~~~a~VtI~Ddd~~g~~~F~~~------~~~V~E~~g~~~v~V~R~~g~~g~v~V 243 (319)
|+.....|..+ +.-.. +.|+....++..+| +.+.|... ...+.|..|...+++-....-+-.|..
T Consensus 14 ~~gqql~~t~~s~~l~v----~vgsch~l~~nf~d----~~l~f~t~s~s~~d~ve~~~~ag~~~ltiglg~~gr~~vv~ 85 (137)
T PF11476_consen 14 HEGQQLMVTFSSPQLHV----SVGSCHSLTVNFSD----YFLSFQTTSNSGFDEVEVDDPAGPGELTIGLGHSGRVTVVF 85 (137)
T ss_dssp -CTEEEEEEEE-SCEEE----EECTTEEEEEETTT----TEEEEESSSSSS-EEEE---EEEEEEEEEEESSSS-EEEEE
T ss_pred hcCceEEEEEecceeeE----Eecchhheeehhcc----ceEEeecCCCCccceEEeccCCCceeEEEecCCCceEEEEE
Confidence 45555666555 32111 16776666666554 56677543 356677778888888765444444555
Q ss_pred EEEe
Q psy5085 244 KWKT 247 (319)
Q Consensus 244 ~~~t 247 (319)
.|.+
T Consensus 86 ~y~~ 89 (137)
T PF11476_consen 86 QYTR 89 (137)
T ss_dssp EEEE
T ss_pred Eeec
Confidence 5644
No 28
>KOG3357|consensus
Probab=21.33 E-value=83 Score=26.10 Aligned_cols=29 Identities=21% Similarity=0.470 Sum_probs=22.0
Q ss_pred cchhhHHHHHHHHHHhhhHHHHhcCCcceeEEEeee
Q psy5085 2 LRLKKYYLAIFWKFIKQTTVLVNATNHTALWYQIGA 37 (319)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sra~yri~a 37 (319)
.|||++|-++.. ++.++.+..+-|||+..
T Consensus 30 qrlkeey~sli~-------yvqnnk~~d~dwfrles 58 (167)
T KOG3357|consen 30 QRLKEEYQSLIA-------YVQNNKSNDNDWFRLES 58 (167)
T ss_pred HHHHHHHHHHHH-------HHHhCcccCCcceEecc
Confidence 489999977653 25566788899999974
No 29
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=20.10 E-value=6.5e+02 Score=22.71 Aligned_cols=87 Identities=8% Similarity=0.047 Sum_probs=51.9
Q ss_pred eeeeeecceeecCCCceEEEeEEecCCCCCcEEEEEEeeeccccCCCcccccceEEEEeCCeeEEEEEEEeecCCCCCCC
Q psy5085 210 IIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSGVITFKHGEVRRVLEIPIIDDLKPEKD 289 (319)
Q Consensus 210 ~~~F~~~~~~V~E~~g~~~v~V~R~~g~~g~v~V~~~t~dGTA~~G~DY~~~~g~l~F~~get~k~i~I~IidD~~~E~d 289 (319)
.+.+....+...|+...+.+.+.-.+. ..+.-|.-++.++....-.+|..+.--...++|+. +.++|--.++..+...
T Consensus 26 gi~i~~TRvIy~~~~~~~si~l~N~~~-~~~~LvQsWv~~~~~~~~~pfivtPPlfrl~p~~~-q~lRIi~~~~~LP~Dr 103 (229)
T PRK15195 26 GIALGATRVIYPADAKQTSLAIRNSHT-NERYLVNSWIENSSGVKEKSFIVTPPLFVSEPKSE-NTLRIIYAGPPLAADR 103 (229)
T ss_pred eEEECCeEEEEeCCCceEEEEEEeCCC-CccEEEEEEecCCCCCccCCEEEcCCeEEECCCCc-eEEEEEECCCCCCCCe
Confidence 355555566667766666666653332 22232332233433222246777888888888887 6677766666667655
Q ss_pred eE-EEEEEeC
Q psy5085 290 EY-FEVKLSE 298 (319)
Q Consensus 290 E~-F~v~L~~ 298 (319)
|+ |++.+.+
T Consensus 104 ESlf~Lnv~e 113 (229)
T PRK15195 104 ESLFWMNVKA 113 (229)
T ss_pred eEEEEEEeee
Confidence 55 7887765
Done!