RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5085
(319 letters)
>gnl|CDD|233149 TIGR00845, caca, sodium/calcium exchanger 1. The Ca2+:Cation
Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA
family are found ubiquitously, having been identified in
animals, plants, yeast, archaea and widely divergent
bacteria.All of the characterized animal proteins
catalyze Ca2+:Na+ exchange although some also transport
K+. The NCX1 plasma membrane protein exchanges 3 Na+ for
1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+
antiport but may also catalyze Na+:H+ antiport. All
remaining well-characterized members of the family
catalyze Ca2+:H+ exchange.This model is specific for the
eukaryotic sodium ion/calcium ion exchangers of the Caca
family [Transport and binding proteins, Other].
Length = 928
Score = 139 bits (352), Expect = 1e-36
Identities = 85/281 (30%), Positives = 137/281 (48%), Gaps = 30/281 (10%)
Query: 32 WYQIGAVRKFTGAKRTEPVLNQRLQEVYKVLNKKDKDSLDNKTTDKVETTTEFKIETKTN 91
+Y+I A R TGA + KK K E T+ E
Sbjct: 356 FYRIQATRLMTGAGN---------------ILKKHAADAARKAVSMHEVATD--DEENDP 398
Query: 92 YAIIEFHAVTVAVREDIGSFKVGILRHG-NLQNIARVRVDSIDGSAKQGKRYQKVNQTVV 150
+ I F E+ G+ + ++R G +L N V + DG+A G Y+ T+V
Sbjct: 399 VSKIFFEPGHYTCLENCGTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFTEGTLV 458
Query: 151 FKENETEKFVTIRIINDEKWDPVEEFFLRLTLL-----------NKSADMVKLGGLNIME 199
FK ET+K I II+D+ ++ E F++RL+ L N + + +L N
Sbjct: 459 FKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLRVGSEDGILEANHVSAVAQLASPNTAT 518
Query: 200 VTIIDDDDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAI-SSRDY 258
VTI+DDD GI FE+ + V ES G++ + +LRTSG+ G V V ++TV+ TA +D+
Sbjct: 519 VTILDDDHAGIFTFEEDVFHVSESIGIMEVKVLRTSGARGTVIVPYRTVEGTARGGGKDF 578
Query: 259 KGGSGVITFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEP 299
+ G + F++ E + + + I+DD + EK++ F ++L EP
Sbjct: 579 EDTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIELGEP 619
Score = 66.7 bits (163), Expect = 4e-12
Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 15/131 (11%)
Query: 204 DDDDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGD-VSVKWKTVDKTAISSRDYKGGS 262
++D I FE Y E+ G VA+ ++R G + V V ++T D TA + DY+
Sbjct: 395 ENDPVSKIFFEPGHYTCLENCGTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFTE 454
Query: 263 GVITFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGG--------------AKIGVV 308
G + FK GE ++ I IIDD E+DE+F V+LS G A++
Sbjct: 455 GTLVFKPGETQKEFRIGIIDDDIFEEDEHFYVRLSNLRVGSEDGILEANHVSAVAQLASP 514
Query: 309 NHCAVTITNDD 319
N VTI +DD
Sbjct: 515 NTATVTILDDD 525
>gnl|CDD|197594 smart00237, Calx_beta, Domains in Na-Ca exchangers and
integrin-beta4. Domain in Na-Ca exchangers and integrin
subunit beta4 (and some cyanobacterial proteins).
Length = 90
Score = 81.5 bits (202), Expect = 1e-19
Identities = 39/90 (43%), Positives = 52/90 (57%)
Query: 208 PGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSGVITF 267
G + FE+ Y V ES G V + ++RT G+ G V V + T D TA + DY+ G +TF
Sbjct: 1 AGSVGFEQPVYTVSESDGEVEVCVVRTGGARGPVVVPYSTEDGTATAGSDYEPVPGELTF 60
Query: 268 KHGEVRRVLEIPIIDDLKPEKDEYFEVKLS 297
GE + + I IIDD EKDE F V+LS
Sbjct: 61 PPGETEKEIRIKIIDDDIYEKDETFYVRLS 90
Score = 69.2 bits (170), Expect = 4e-15
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 94 IIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKE 153
+ F V E G +V ++R G + V + DG+A G Y+ V + F
Sbjct: 3 SVGFEQPVYTVSESDGEVEVCVVRTGGARGPVVVPYSTEDGTATAGSDYEPVPGELTFPP 62
Query: 154 NETEKFVTIRIINDEKWDPVEEFFLRLT 181
ETEK + I+II+D+ ++ E F++RL+
Sbjct: 63 GETEKEIRIKIIDDDIYEKDETFYVRLS 90
>gnl|CDD|202559 pfam03160, Calx-beta, Calx-beta domain.
Length = 91
Score = 74.6 bits (184), Expect = 5e-17
Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 208 PGIIQFEKRGYLVKESSGVVAIPILRTSGS-DGDVSVKWKTVDKTAISSRDYKGGSGVIT 266
G++ FE Y V E+ GVV + ++R SG+ G V+V ++T D TA + DY+ G +T
Sbjct: 1 AGVVGFEPPVYQVSENDGVVEVCVVRMSGALRGTVTVSYRTEDGTATAGDDYEPVEGTLT 60
Query: 267 FKHGEVRRVLEIPIIDDLKPEKDEYFEVKLS 297
F GE + + + IIDD E DE F V+LS
Sbjct: 61 FGPGETEKCINVTIIDDDVYEGDENFFVELS 91
Score = 69.6 bits (171), Expect = 4e-15
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 94 IIEFHAVTVAVREDIGSFKVGILRH-GNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFK 152
++ F V E+ G +V ++R G L+ V + DG+A G Y+ V T+ F
Sbjct: 3 VVGFEPPVYQVSENDGVVEVCVVRMSGALRGTVTVSYRTEDGTATAGDDYEPVEGTLTFG 62
Query: 153 ENETEKFVTIRIINDEKWDPVEEFFLRLT 181
ETEK + + II+D+ ++ E FF+ L+
Sbjct: 63 PGETEKCINVTIIDDDVYEGDENFFVELS 91
>gnl|CDD|219881 pfam08522, DUF1735, Domain of unknown function (DUF1735). This
domain of unknown function is found in a number of
bacterial proteins including acylhydrolases.
Length = 86
Score = 27.6 bits (62), Expect = 2.4
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 142 YQKVNQTVVFKENETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMV 190
Y N TV K E+ V I+ + + + + L LT+ + S +
Sbjct: 35 YSLPNSTVTIKAGESSADVPIKFKDLDGLSLGKTYVLPLTITSVSGYSI 83
>gnl|CDD|215344 PLN02640, PLN02640, glucose-6-phosphate 1-dehydrogenase.
Length = 573
Score = 29.2 bits (65), Expect = 3.5
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 106 EDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQK-VNQTVVFKENETEKFVTIRI 164
EDI + KV +LR + V V G +K GK Y + V K + T F +
Sbjct: 343 EDIRNEKVKVLRSMKPLQLEDVIVGQYKGHSKGGKSYPAYTDDPTVPKHSLTPTFAAAAL 402
Query: 165 -INDEKWDPV 173
IN+ +WD V
Sbjct: 403 FINNARWDGV 412
>gnl|CDD|202109 pfam02089, Palm_thioest, Palmitoyl protein thioesterase.
Length = 279
Score = 28.5 bits (63), Expect = 4.4
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 145 VNQTVVFKEN--ETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMVKLGGLNIMEVTI 202
VN++ +K+N +KFV ++ +ND DPV+ + ++ + + L E T+
Sbjct: 184 VNES--YKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAKETIPL-----QESTL 236
Query: 203 IDDDDPGIIQFEKRGYLV 220
D G+ +K G LV
Sbjct: 237 YTQDRLGLKAMDKAGQLV 254
>gnl|CDD|240308 PTZ00188, PTZ00188, adrenodoxin reductase; Provisional.
Length = 506
Score = 27.9 bits (62), Expect = 8.4
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 17/116 (14%)
Query: 51 LNQRLQEVYKVLNKKDKDSLDNKTTDKVETT------TEFKIETKTNYAIIEFHAVTVAV 104
++ ++ V LNK S + +KV T T FK K+N+A ++
Sbjct: 340 IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFK---KSNFAENLYNQSVQMF 396
Query: 105 REDIGSFKVGILRHGNLQ-----NIARVRVDSIDGSAKQGKRYQKVNQTVVFKENE 155
+EDIG K I + G NIA ++S + + QKV+ +F +N+
Sbjct: 397 KEDIGQHKFAIFKAGWFDKGPKGNIASQILNSKNSTHLVLNFLQKVD---IFFDND 449
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase.
Length = 343
Score = 27.9 bits (62), Expect = 8.5
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 151 FKENETEKFVTIRIINDEKWDPV 173
+ E E F++I I+ ++W PV
Sbjct: 319 LTQEEAESFLSIDFIDGKEWLPV 341
>gnl|CDD|220197 pfam09351, DUF1993, Domain of unknown function (DUF1993). This
family of proteins are functionally uncharacterized.
Length = 162
Score = 27.2 bits (61), Expect = 9.4
Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 22/78 (28%)
Query: 51 LNQRLQEVYKVLNKKDKDSLDNKTTDKVETTTEFKIETKT--------NYAI--IEFHAV 100
L R+ + L D D + + T + ++A+ FH
Sbjct: 85 LQARIAKTIAYLEALDPAQFDGA--EDRDITLPLGGKEFDFTGEAYLLSFALPNFYFHVT 142
Query: 101 TVAVREDIGSFKVGILRH 118
T ILRH
Sbjct: 143 TA----------YAILRH 150
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.136 0.384
Gapped
Lambda K H
0.267 0.0758 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,211,531
Number of extensions: 1583154
Number of successful extensions: 1250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1242
Number of HSP's successfully gapped: 20
Length of query: 319
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 222
Effective length of database: 6,635,264
Effective search space: 1473028608
Effective search space used: 1473028608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)