RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5085
(319 letters)
>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation,
metal binding protein; 2.35A {Drosophila melanogaster}
PDB: 3rb7_A 3e9u_A
Length = 298
Score = 172 bits (436), Expect = 8e-52
Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 6/227 (2%)
Query: 93 AIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFK 152
+ F V E+ G F+V ++R G++ A V ++ DG+A G + + F
Sbjct: 10 IRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFP 69
Query: 153 ENETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMVKLGGLNIMEVTIIDDDDPGIIQ 212
E+ I +I+D+ ++ E F++RL ++ KL I V I+DDD GI
Sbjct: 70 PGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGV---KLAVPMIATVMILDDDHAGIFA 126
Query: 213 FEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSGVITFKHGEV 272
F + + ES G + ++R SG+ G V V + T + TA S+DY+G G + F++ E
Sbjct: 127 FTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATESKDYEGARGELVFENNES 186
Query: 273 RRVLEIPIIDDLKPEKDEYFEVKLSEPTGGAKIGVVNHCAVTITNDD 319
+ +++ I+++ EKD F+V + EP A +
Sbjct: 187 EKFIDLFILEESSYEKDVSFKVHIGEPRLAP---DDELAAKIKEVEK 230
Score = 109 bits (274), Expect = 4e-28
Identities = 38/116 (32%), Positives = 60/116 (51%)
Query: 204 DDDDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSG 263
+ DDP + FE Y V E+ G + ++R SV+++T D TA + D+ G G
Sbjct: 5 EADDPIRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKG 64
Query: 264 VITFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGGAKIGVVNHCAVTITNDD 319
+++F G + I +IDD E+DE F ++L P+ G K+ V V I +DD
Sbjct: 65 LLSFPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDD 120
Score = 75.3 bits (185), Expect = 1e-15
Identities = 28/177 (15%), Positives = 65/177 (36%), Gaps = 11/177 (6%)
Query: 80 TTTEFKIETKTNYAIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQG 139
I + I F + E +G F++ ++R+ + V + + +A +
Sbjct: 110 MIATVMILDDDHAGIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATES 169
Query: 140 KRYQKVNQTVVFKENETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMVKLGGLNIME 199
K Y+ +VF+ NE+EKF+ + I+ + ++ F + + +L + +
Sbjct: 170 KDYEGARGELVFENNESEKFIDLFILEESSYEKDVSFKVHIG-------EPRLAPDDELA 222
Query: 200 VTIIDDDDPGIIQFEKRG---YLVKESSGVVAIPILRTSGS-DGDVSVKWKTVDKTA 252
I + + + + L K +G + +R S + +V
Sbjct: 223 AKIKEVEKKPVQDLTELDRILLLSKPRNGELTTAYVRIRESQEFKATVDKLVAKANV 279
>3us9_A Sodium/calcium exchanger 1; beta-sandwich, calcium binding protein,
intracellular, metal protein; 2.68A {Canis lupus
familiaris} PDB: 2klt_A
Length = 295
Score = 170 bits (433), Expect = 2e-51
Identities = 73/245 (29%), Positives = 123/245 (50%), Gaps = 16/245 (6%)
Query: 91 NYAIIEFHAVTVAVREDIGSFKVGILRH-GNLQNIARVRVDSIDGSAKQGKRYQKVNQTV 149
+ + I F T E+ G+ + I+R G+L N V + DG+A G Y+ TV
Sbjct: 8 HVSKIFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTV 67
Query: 150 VFKENETEKFVTIRIINDEKWDPVEEFFLRLT--------------LLNKSADMVKLGGL 195
VFK ET+K + + II+D+ ++ + F + L+ N + + LG
Sbjct: 68 VFKPGETQKEIRVGIIDDDIFEEDKNFLVHLSNVKVSSEASEDGILEANHVSALACLGSP 127
Query: 196 NIMEVTIIDDDDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISS 255
+ VTI DDD GI FE+ V ES G++ + +LRTSG+ G+V V +KT++ TA
Sbjct: 128 STATVTIFDDDHAGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGG 187
Query: 256 -RDYKGGSGVITFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGGAKIGVVNHCAVT 314
D++ G + F++ E+ + + + +IDD + EK++ F +++ EP +T
Sbjct: 188 GEDFEDTCGELEFQNDEIVKTISVKVIDDEEYEKNKTFFLEIGEPRLVEMSEKKGGFTIT 247
Query: 315 ITNDD 319
DD
Sbjct: 248 EEYDD 252
Score = 92.4 bits (229), Expect = 8e-22
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 18/138 (13%)
Query: 200 VTIIDDDDPGIIQFEKRGYLVKESSGVVAIPILRTSG-SDGDVSVKWKTVDKTAISSRDY 258
++ I FE+ Y E+ G VA+ I+R G V V ++T D TA + DY
Sbjct: 1 MSHHHHHHVSKIFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDY 60
Query: 259 KGGSGVITFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGG---------------- 302
+ G + FK GE ++ + + IIDD E+D+ F V LS
Sbjct: 61 EFTEGTVVFKPGETQKEIRVGIIDDDIFEEDKNFLVHLSNVKVSSEASEDGILEANHVSA 120
Query: 303 -AKIGVVNHCAVTITNDD 319
A +G + VTI +DD
Sbjct: 121 LACLGSPSTATVTIFDDD 138
Score = 72.7 bits (178), Expect = 7e-15
Identities = 31/158 (19%), Positives = 66/158 (41%), Gaps = 6/158 (3%)
Query: 80 TTTEFKIETKTNYAIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQ- 138
+T I + I F V E IG +V +LR + V +I+G+A+
Sbjct: 128 STATVTIFDDDHAGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGG 187
Query: 139 GKRYQKVNQTVVFKENETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMVKLGGLN-I 197
G+ ++ + F+ +E K +++++I+DE+++ + FFL + +V++
Sbjct: 188 GEDFEDTCGELEFQNDEIVKTISVKVIDDEEYEKNKTFFLEIG----EPRLVEMSEKKGG 243
Query: 198 MEVTIIDDDDPGIIQFEKRGYLVKESSGVVAIPILRTS 235
+T DD + E+ + E + +
Sbjct: 244 FTITEEYDDKQPLTSKEEEERRIAEMGRPILGEHTKLE 281
>3e9t_A Na/Ca exchange protein; CBD1, CALX, membrane, transmembrane,
membrane protein; 1.60A {Drosophila melanogaster}
Length = 114
Score = 123 bits (312), Expect = 1e-35
Identities = 35/113 (30%), Positives = 57/113 (50%)
Query: 207 DPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSGVIT 266
+ + FE Y V E+ G + ++R SV+++T D TA + D+ G G+++
Sbjct: 1 EFIRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLS 60
Query: 267 FKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGGAKIGVVNHCAVTITNDD 319
F G + I +IDD E+DE F ++L P+ G K+ V V I +DD
Sbjct: 61 FPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDD 113
Score = 88.9 bits (221), Expect = 2e-22
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 92 YAIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVF 151
+ + F V E+ G F+V ++R G++ A V ++ DG+A G + + F
Sbjct: 2 FIRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSF 61
Query: 152 KENETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMVKLGGLNIMEVTIIDDD 206
E+ I +I+D+ ++ E F++RL N S VKL I V I+DDD
Sbjct: 62 PPGVDEQRFRIEVIDDDVFEEDECFYIRLF--NPSEG-VKLAVPMIATVMILDDD 113
>3fso_A Integrin beta-4, GP150; immunoglobulin fold, cell adhesion,
alternative splicing, disease mutation, epidermolysis
bullosa, glycoprotein, membrane; 1.41A {Homo sapiens}
PDB: 3fq4_A 3h6a_A
Length = 123
Score = 123 bits (310), Expect = 3e-35
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 205 DDDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSGV 264
++ FE+ + V V IP++R G V ++T D TA +RDY G
Sbjct: 2 SHMRDVVSFEQPEFSVSRGDQVARIPVIRRVLDGGKSQVSYRTQDGTAQGNRDYIPVEGE 61
Query: 265 ITFKHGEVRRVLEIPIIDD------LKPEKDEYFEVKLSEPTGGAKIGVVNHCAVTITND 318
+ F+ GE + L++ +++ L+ + F V+LS P GA +G + + I +
Sbjct: 62 LLFQPGEAWKELQVKLLELQEVDSLLRGRQVRRFHVQLSNPKFGAHLGQPHSTTIIIRDP 121
Query: 319 D 319
D
Sbjct: 122 D 122
Score = 84.4 bits (209), Expect = 2e-20
Identities = 20/118 (16%), Positives = 48/118 (40%), Gaps = 5/118 (4%)
Query: 94 IIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKE 153
++ F +V ++ ++R ++V + DG+A+ + Y V ++F+
Sbjct: 7 VVSFEQPEFSVSRGDQVARIPVIRRVLDGGKSQVSYRTQDGTAQGNRDYIPVEGELLFQP 66
Query: 154 NETEKFVTIRIINDEKWDPVEE----FFLRLTLLNKSADMVKLGGLNIMEVTIIDDDD 207
E K + ++++ ++ D + + L N LG + + I D D+
Sbjct: 67 GEAWKELQVKLLELQEVDSLLRGRQVRRFHVQLSNPKFG-AHLGQPHSTTIIIRDPDE 123
>3ead_A Na/Ca exchange protein; CBD1, calcium regulation, membrane,
transmembrane, membrane; 2.25A {Drosophila melanogaster}
Length = 137
Score = 123 bits (311), Expect = 4e-35
Identities = 38/114 (33%), Positives = 59/114 (51%)
Query: 206 DDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKGGSGVI 265
DDP + FE Y V E+ G + ++R SV+++T D TA + D+ G G++
Sbjct: 2 DDPIRMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLL 61
Query: 266 TFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGGAKIGVVNHCAVTITNDD 319
+F G + I +IDD E+DE F ++L P+ G K+ V V I +DD
Sbjct: 62 SFPPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILDDD 115
Score = 109 bits (275), Expect = 6e-30
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 3/134 (2%)
Query: 94 IIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKE 153
+ F V E+ G F+V ++R G++ A V ++ DG+A G + + F
Sbjct: 6 RMYFEPGHYTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPP 65
Query: 154 NETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMVKLGGLNIMEVTIIDDDDPGIIQF 213
E+ I +I+D+ ++ E F++RL ++ KL I V I+DDD GI F
Sbjct: 66 GVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGV---KLAVPMIATVMILDDDHAGIFAF 122
Query: 214 EKRGYLVKESSGVV 227
+ + ES G
Sbjct: 123 TDSVFEITESVGRF 136
>3gin_A Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calcium binding domain
1, antiport, calcium transport, calmodulin-binding, cell
membrane; 2.40A {Canis lupus familiaris} PDB: 2dpk_A*
2fws_A
Length = 160
Score = 113 bits (284), Expect = 6e-31
Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 18/139 (12%)
Query: 199 EVTIIDDDDPGIIQFEKRGYLVKESSGVVAIPILRTSG-SDGDVSVKWKTVDKTAISSRD 257
EV I FE+ Y E+ G VA+ I+R G V V ++T D TA + D
Sbjct: 13 EVLFQGPGPVSKIFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSD 72
Query: 258 YKGGSGVITFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGG--------------- 302
Y+ G + FK GE ++ + + IIDD E+D+ F V LS
Sbjct: 73 YEFTEGTVVFKPGETQKEIRVGIIDDDIFEEDKNFLVHLSNVKVSSEASEDGILEANHVS 132
Query: 303 --AKIGVVNHCAVTITNDD 319
A +G + VTI +DD
Sbjct: 133 ALACLGSPSTATVTIFDDD 151
Score = 96.5 bits (240), Expect = 1e-24
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 15/151 (9%)
Query: 80 TTTEFKIETKTNYAIIEFHAVTVAVREDIGSFKVGILRH-GNLQNIARVRVDSIDGSAKQ 138
E + + I F T E+ G+ + I+R G+L N V + DG+A
Sbjct: 10 AALEVLFQGPGPVSKIFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANA 69
Query: 139 GKRYQKVNQTVVFKENETEKFVTIRIINDEKWDPVEEFFLRLT--------------LLN 184
G Y+ TVVFK ET+K + + II+D+ ++ + F + L+ N
Sbjct: 70 GSDYEFTEGTVVFKPGETQKEIRVGIIDDDIFEEDKNFLVHLSNVKVSSEASEDGILEAN 129
Query: 185 KSADMVKLGGLNIMEVTIIDDDDPGIIQFEK 215
+ + LG + VTI DDD GI FE+
Sbjct: 130 HVSALACLGSPSTATVTIFDDDHAGIFTFEE 160
>2lt9_A Protein SLC8A3; NCX, NCX3, NACA exchanger, CBD, CBD2, calcium
binding domain binding protein; NMR {Mus musculus}
Length = 157
Score = 106 bits (265), Expect = 2e-28
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 203 IDDDDPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAI-SSRDYKGG 261
GI FE V ES GV+ + +LRTSG+ G V V ++TV+ TA D++
Sbjct: 6 HHHHHAGIFTFECDTIHVSESIGVMEVKVLRTSGARGTVIVPFRTVEGTAKGGGEDFEDA 65
Query: 262 SGVITFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGGAKIGVVNHCAVTITNDD 319
G + FK+ E + + + I+D+ + E+ E F + L EP + ++
Sbjct: 66 YGELEFKNDETVKTIRVKIVDEEEYERQENFFIALGEPKWMERGISEVTDRKLTVEEE 123
Score = 80.4 bits (198), Expect = 1e-18
Identities = 29/126 (23%), Positives = 61/126 (48%), Gaps = 3/126 (2%)
Query: 91 NYAIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKR-YQKVNQTV 149
+ I F T+ V E IG +V +LR + V +++G+AK G ++ +
Sbjct: 10 HAGIFTFECDTIHVSESIGVMEVKVLRTSGARGTVIVPFRTVEGTAKGGGEDFEDAYGEL 69
Query: 150 VFKENETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMVKLGGLNIMEVTIIDDDDPG 209
FK +ET K + ++I+++E+++ E FF+ L + + ++T+ +++
Sbjct: 70 EFKNDETVKTIRVKIVDEEEYERQENFFIALGEPKWME--RGISEVTDRKLTVEEEEAKR 127
Query: 210 IIQFEK 215
I + K
Sbjct: 128 IAEMGK 133
>2qvk_A CBD2, sodium/calcium exchanger 1; calcium binding domain, metal
binding protein; 1.45A {Canis lupus familiaris} PDB:
2qvm_A 2fwu_A 2kls_A
Length = 192
Score = 105 bits (262), Expect = 2e-27
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 207 DPGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISS-RDYKGGSGVI 265
GI FE+ V ES G++ + +LRTSG+ G+V V +KT++ TA D++ G +
Sbjct: 4 HAGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGEL 63
Query: 266 TFKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGG-----AKIGVVNHCAVTITNDD 319
F++ E+ + + + +IDD + EK++ F +++ EP + + TIT
Sbjct: 64 EFQNDEIVKTISVKVIDDEEYEKNKTFFLEIGEPRLVEMSEKKALLLNELGGFTITGKY 122
Score = 88.2 bits (218), Expect = 4e-21
Identities = 36/170 (21%), Positives = 69/170 (40%), Gaps = 4/170 (2%)
Query: 94 IIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQGKR-YQKVNQTVVFK 152
I F V E IG +V +LR + V +I+G+A+ G ++ + F+
Sbjct: 7 IFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELEFQ 66
Query: 153 ENETEKFVTIRIINDEKWDPVEEFFLRLT--LLNKSADMVKLGGLNIMEVTIIDDDDPGI 210
+E K +++++I+DE+++ + FFL + L + ++ L + TI G
Sbjct: 67 NDEIVKTISVKVIDDEEYEKNKTFFLEIGEPRLVEMSEKKALLLNELGGFTITGKYLYGQ 126
Query: 211 IQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKTAISSRDYKG 260
F K + + I I ++ K + + A R G
Sbjct: 127 PVFRK-VHAREHPIPSTVITIAEEYDDKQPLTSKEEEERRIAEMGRPILG 175
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 7e-05
Identities = 37/245 (15%), Positives = 76/245 (31%), Gaps = 76/245 (31%)
Query: 4 LKKYY--LAIF--------------W-------------KFIKQTTVLVNATNHTALWYQ 34
+K + L++F W K K + V T
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST---IS 427
Query: 35 I-GAVRKFTGAKRTEPVLNQRLQEVYKVLNKKDKDSLDNKTTDKVETTTEFKIETKTNY- 92
I + E L++ + + Y + D D L D Y
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD--------------QYF 473
Query: 93 -AIIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGSAKQG--------KRYQ 143
+ I H + E + F++ L L+ ++R DS +A K Y+
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLE--QKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 144 KVNQTVVFKENETEKFVTIRIINDEKWDPVEEFFLRL---TLLNKSADMVKLGGLNIMEV 200
+ + + E R++N + +F ++ + +K D++++ L +
Sbjct: 532 PY---ICDNDPKYE-----RLVNA-----ILDFLPKIEENLICSKYTDLLRI-ALMAEDE 577
Query: 201 TIIDD 205
I ++
Sbjct: 578 AIFEE 582
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.018
Identities = 35/207 (16%), Positives = 72/207 (34%), Gaps = 66/207 (31%)
Query: 115 ILRHGNLQNIARVRVDSIDGSAKQGKRYQKVNQTVVFKENE---TEKFVTIRIINDEKWD 171
L HG+L++ + ++ + F + TE F +DE
Sbjct: 10 TLSHGSLEH-------VLLVPTASFFIASQLQEQ--FNKILPEPTEGFAA----DDEPTT 56
Query: 172 PVEEF--FLRLT--LLNKSA-----DMVK----------LGGLNI--MEVTIIDDDDPGI 210
P E FL L+ S ++ L G +I + ++ ++D +
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 211 IQFEK--RGYLVKESSGVVAIPILRTSGS-------DGDVSVKWKTVDKTAISSRDYKGG 261
++ ++ + Y+ + + P + S S +G+ + AI GG
Sbjct: 117 VKTKELIKNYI--TARIMAKRPFDKKSNSALFRAVGEGNAQL-------VAIF-----GG 162
Query: 262 SGVIT--FKHGEVRRVLEI--PIIDDL 284
G F+ E+R + + ++ DL
Sbjct: 163 QGNTDDYFE--ELRDLYQTYHVLVGDL 187
Score = 35.4 bits (81), Expect = 0.030
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 16/56 (28%)
Query: 252 AISSRDYKGGSGVITFKHGEVRRVLEIP-----IIDDLKPEKDEYFEVKLSEPTGG 302
A S+R +T HG + VL +P I L+ E F L EPT G
Sbjct: 3 AYSTRP-------LTLSHGSLEHVLLVPTASFFIASQLQ----EQFNKILPEPTEG 47
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A
{Homo sapiens}
Length = 349
Score = 27.7 bits (61), Expect = 4.8
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 50 VLNQRLQEVYKVLNKKDKDSLDNKTTDK------VETTTEFKIETKTNYAIIEFHAVTVA 103
VL +RL+ YK K+S + E T E + + IIEF V +
Sbjct: 101 VLKKRLKNYYKKQKLMLKESNFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLN 160
Query: 104 VR--EDIGSF 111
E +F
Sbjct: 161 THTLEIEDTF 170
>3drw_A ADP-specific phosphofructokinase; AMP, cytoplasm, glycolysis,
magnesium, metal-binding, transferase, structural
genomics, PSI-2; HET: AMP; 1.90A {Pyrococcus horikoshii}
PDB: 1u2x_A
Length = 474
Score = 27.3 bits (60), Expect = 8.8
Identities = 8/48 (16%), Positives = 12/48 (25%), Gaps = 6/48 (12%)
Query: 163 RII--NDEKWDP----VEEFFLRLTLLNKSADMVKLGGLNIMEVTIID 204
R I + E+ L + K D G + D
Sbjct: 207 RFIVSARFESISRIETREDIKPFLGEIGKEVDGAIFSGYQGLRTKYSD 254
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.384
Gapped
Lambda K H
0.267 0.0818 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,887,374
Number of extensions: 302584
Number of successful extensions: 562
Number of sequences better than 10.0: 1
Number of HSP's gapped: 539
Number of HSP's successfully gapped: 32
Length of query: 319
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 225
Effective length of database: 4,077,219
Effective search space: 917374275
Effective search space used: 917374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)