RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5085
         (319 letters)



>d2fwua1 b.1.27.1 (A:501-657) Sodium/calcium exchanger 1 {Dog (Canis
           familiaris) [TaxId: 9615]}
          Length = 157

 Score = 91.7 bits (227), Expect = 2e-23
 Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 1/113 (0%)

Query: 208 PGIIQFEKRGYLVKESSGVVAIPILRTSGSDGDVSVKWKTVDKT-AISSRDYKGGSGVIT 266
            GI  FE+    V ES G++ + +LRTSG+ G+V V +KT++ T      D++   G + 
Sbjct: 2   AGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELE 61

Query: 267 FKHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGGAKIGVVNHCAVTITNDD 319
           F++ E+ + + + +IDD + EK++ F +++ EP             +T   DD
Sbjct: 62  FQNDEIVKTISVKVIDDEEYEKNKTFFLEIGEPRLVEMSEKKGGFTITEEYDD 114



 Score = 56.7 bits (136), Expect = 2e-10
 Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 5/122 (4%)

Query: 94  IIEFHAVTVAVREDIGSFKVGILRHGNLQNIARVRVDSIDGS-AKQGKRYQKVNQTVVFK 152
           I  F      V E IG  +V +LR    +    V   +I+G+    G+ ++     + F+
Sbjct: 4   IFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELEFQ 63

Query: 153 ENETEKFVTIRIINDEKWDPVEEFFLRLTLLNKSADMVKLGGLNIMEVTIIDDDDPGIIQ 212
            +E  K +++++I+DE+++  + FFL +        +V++           + DD   + 
Sbjct: 64  NDEIVKTISVKVIDDEEYEKNKTFFLEIG----EPRLVEMSEKKGGFTITEEYDDKQPLT 119

Query: 213 FE 214
            +
Sbjct: 120 SK 121


>d2dpka1 b.1.27.1 (A:370-502) Sodium/calcium exchanger 1 {Dog (Canis
           familiaris) [TaxId: 9615]}
          Length = 133

 Score = 83.8 bits (206), Expect = 1e-20
 Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 18/129 (13%)

Query: 209 GIIQFEKRGYLVKESSGVVAIPILRTSGS-DGDVSVKWKTVDKTAISSRDYKGGSGVITF 267
             I FE+  Y   E+ G VA+ I+R  G     V V ++T D TA +  DY+   G + F
Sbjct: 3   SKIFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVF 62

Query: 268 KHGEVRRVLEIPIIDDLKPEKDEYFEVKLSEPTGG-----------------AKIGVVNH 310
           K GE ++ + + IIDD   E+DE F V LS                      A +G  + 
Sbjct: 63  KPGETQKEIRVGIIDDDIFEEDENFLVHLSNVKVSSEASEDGILEANHVSALACLGSPST 122

Query: 311 CAVTITNDD 319
             VTI +DD
Sbjct: 123 ATVTIFDDD 131



 Score = 69.9 bits (170), Expect = 2e-15
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 15/131 (11%)

Query: 92  YAIIEFHAVTVAVREDIGSFKVGILRH-GNLQNIARVRVDSIDGSAKQGKRYQKVNQTVV 150
            + I F   T    E+ G+  + I+R  G+L N   V   + DG+A  G  Y+    TVV
Sbjct: 2   VSKIFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVV 61

Query: 151 FKENETEKFVTIRIINDEKWDPVEEFFLRLT--------------LLNKSADMVKLGGLN 196
           FK  ET+K + + II+D+ ++  E F + L+                N  + +  LG  +
Sbjct: 62  FKPGETQKEIRVGIIDDDIFEEDENFLVHLSNVKVSSEASEDGILEANHVSALACLGSPS 121

Query: 197 IMEVTIIDDDD 207
              VTI DDD 
Sbjct: 122 TATVTIFDDDH 132


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.136    0.384 

Gapped
Lambda     K      H
   0.267   0.0507    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,190,063
Number of extensions: 56998
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 9
Length of query: 319
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,240,546
Effective search space: 290287764
Effective search space used: 290287764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.7 bits)