Query psy5086
Match_columns 124
No_of_seqs 128 out of 1016
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 16:57:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11029 FtsH protease regulat 99.9 4.8E-22 1E-26 160.6 12.0 85 30-115 9-101 (334)
2 KOG3090|consensus 99.9 1.1E-22 2.5E-27 156.0 7.3 108 16-123 13-120 (290)
3 PRK10930 FtsH protease regulat 99.9 2.3E-21 5.1E-26 160.5 13.8 87 28-116 84-172 (419)
4 TIGR01932 hflC HflC protein. H 99.9 4.8E-21 1E-25 153.4 12.1 82 31-113 10-98 (317)
5 cd03401 Band_7_prohibitin Band 99.8 3.9E-21 8.4E-26 142.9 8.7 83 40-123 1-84 (196)
6 cd03406 Band_7_3 A subgroup of 99.8 5.2E-20 1.1E-24 145.7 8.7 85 37-122 1-87 (280)
7 cd03404 Band_7_HflK Band_7_Hfl 99.8 2.4E-19 5.3E-24 139.3 8.9 87 29-117 3-103 (266)
8 cd03402 Band_7_2 A subgroup of 99.8 4E-19 8.7E-24 136.1 8.3 76 40-117 1-78 (219)
9 cd03405 Band_7_HflC Band_7_Hfl 99.8 1.1E-18 2.4E-23 133.5 8.5 73 41-114 1-74 (242)
10 cd03407 Band_7_4 A subgroup of 99.7 6.4E-18 1.4E-22 131.8 8.6 74 46-121 1-75 (262)
11 smart00244 PHB prohibitin homo 99.7 1.4E-17 3.1E-22 118.6 9.4 73 39-113 1-74 (160)
12 cd03403 Band_7_stomatin_like B 99.7 1.9E-17 4.1E-22 124.6 7.8 72 44-117 1-75 (215)
13 TIGR01933 hflK HflK protein. H 99.7 3.7E-17 8.1E-22 126.9 9.1 71 41-113 1-72 (261)
14 COG0330 HflC Membrane protease 99.7 2.1E-16 4.6E-21 124.1 11.6 86 29-116 9-101 (291)
15 KOG3083|consensus 99.7 1.5E-17 3.3E-22 127.6 4.7 95 29-123 15-109 (271)
16 PF01145 Band_7: SPFH domain / 99.6 3.3E-16 7.2E-21 113.2 2.2 69 42-112 1-72 (179)
17 KOG2621|consensus 99.6 2.6E-15 5.6E-20 118.0 5.0 78 35-113 49-128 (288)
18 KOG2962|consensus 99.1 1.4E-10 3E-15 90.1 6.2 95 28-123 10-106 (322)
19 KOG2620|consensus 99.1 8.7E-12 1.9E-16 97.8 -2.6 72 43-116 11-85 (301)
20 cd03408 Band_7_5 A subgroup of 99.0 1.8E-09 3.9E-14 80.5 7.0 79 37-117 12-117 (207)
21 COG2268 Uncharacterized protei 98.4 2.9E-06 6.4E-11 72.7 10.1 76 39-115 32-116 (548)
22 cd03400 Band_7_1 A subgroup of 98.3 1.1E-06 2.5E-11 60.9 4.0 44 80-123 2-45 (124)
23 cd03399 Band_7_flotillin Band_ 97.4 0.00022 4.8E-09 49.6 4.1 36 81-116 2-38 (128)
24 cd02106 Band_7 The band 7 doma 95.3 0.033 7.2E-07 36.7 4.1 33 84-116 5-38 (121)
25 KOG2668|consensus 94.6 0.16 3.4E-06 42.2 6.9 74 42-119 3-77 (428)
26 PF13421 Band_7_1: SPFH domain 84.9 1.3 2.8E-05 33.9 3.6 32 38-71 13-44 (211)
27 PF12911 OppC_N: N-terminal TM 65.2 6.7 0.00015 23.0 2.3 15 3-17 2-16 (56)
28 TIGR01000 bacteriocin_acc bact 56.4 35 0.00076 28.6 5.9 35 8-42 7-41 (457)
29 PF13150 DUF3989: Protein of u 38.7 17 0.00037 24.0 1.1 16 2-17 11-26 (85)
30 PF01043 SecA_PP_bind: SecA pr 34.9 22 0.00048 24.5 1.2 28 41-69 80-109 (113)
31 COG4260 Membrane protease subu 30.7 3.1E+02 0.0066 22.6 7.4 73 39-112 39-138 (345)
32 PRK00753 psbL photosystem II r 30.6 54 0.0012 18.5 2.1 20 23-42 18-37 (39)
33 PF10717 ODV-E18: Occlusion-de 27.9 59 0.0013 21.6 2.3 10 30-39 36-45 (85)
34 PF07509 DUF1523: Protein of u 27.0 1.2E+02 0.0026 22.8 4.0 24 66-89 19-42 (175)
35 TIGR02876 spore_yqfD sporulati 26.8 1.2E+02 0.0027 25.1 4.5 39 4-42 53-105 (382)
36 cd09024 Aldose_epim_lacX Aldos 26.5 1.3E+02 0.0027 23.5 4.3 50 66-117 71-120 (288)
37 KOG4737|consensus 26.4 82 0.0018 25.7 3.2 34 24-58 287-320 (326)
38 PF09889 DUF2116: Uncharacteri 25.8 39 0.00085 20.8 1.1 16 23-38 40-55 (59)
39 COG1766 fliF Flagellar basal b 25.7 64 0.0014 28.3 2.7 16 3-18 9-24 (545)
40 PF07423 DUF1510: Protein of u 22.4 64 0.0014 25.0 1.9 7 35-41 29-35 (217)
41 CHL00038 psbL photosystem II p 21.0 88 0.0019 17.6 1.8 20 23-42 17-36 (38)
42 PHA02513 V1 structural protein 20.8 1.8E+02 0.004 20.5 3.7 22 4-25 47-68 (135)
43 PF07850 Renin_r: Renin recept 20.6 6.9 0.00015 26.7 -3.3 33 24-57 59-91 (98)
44 PRK11118 putative monooxygenas 20.1 51 0.0011 22.6 0.8 12 64-75 32-43 (100)
No 1
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=99.88 E-value=4.8e-22 Score=160.59 Aligned_cols=85 Identities=26% Similarity=0.367 Sum_probs=75.4
Q ss_pred HHHHHHhhhcceEEecCCeEEEEEeccCceeec------eeCCccEEecCccceeEEEEeeeEeeeeCC-cccccCCCEE
Q psy5086 30 AGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQNN------VFAEGLHFRLPWFQYPIIYDIRSRPRKISS-PTGSKDLQMV 102 (124)
Q Consensus 30 ~~~~~~~l~ss~~~V~~ge~gVv~~rfGk~~~~------~~~pGlhfkiP~i~~v~~~d~r~q~~~~~~-~~~T~D~~~V 102 (124)
++++++++++|+|+|++||+||++ ||||+.+. +++|||||++||++++..+|+|.|+++.+. +++|+|++.|
T Consensus 9 ~~~~~~~l~~s~~iV~ege~gVV~-rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~~V 87 (334)
T PRK11029 9 IIIVLVVLYMSVFVVKEGERGIVL-RFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDL 87 (334)
T ss_pred HHHHHHHHHheEEEECCCeEEEEE-ECCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCCEE
Confidence 334445678999999999999999 99999763 489999999999999999999999999885 7899999999
Q ss_pred EEEEEEEEEe-CCC
Q psy5086 103 NISLRVLARP-DAS 115 (124)
Q Consensus 103 ~vd~~V~yrv-~~~ 115 (124)
++|++|+||| ||.
T Consensus 88 ~VD~~V~yrI~Dp~ 101 (334)
T PRK11029 88 IVDSYIKWRISDFS 101 (334)
T ss_pred EEEEEEEEEECCHH
Confidence 9999999999 443
No 2
>KOG3090|consensus
Probab=99.87 E-value=1.1e-22 Score=156.02 Aligned_cols=108 Identities=63% Similarity=1.192 Sum_probs=101.0
Q ss_pred CCCCchhhHHHHHHHHHHHHhhhcceEEecCCeEEEEEeccCceeeceeCCccEEecCccceeEEEEeeeEeeeeCCccc
Q psy5086 16 GPKGVGVGLKLAALAGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISSPTG 95 (124)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~ss~~~V~~ge~gVv~~rfGk~~~~~~~pGlhfkiP~i~~v~~~d~r~q~~~~~~~~~ 95 (124)
+++++++.+.+.++.++.+..+..|+|.|+.|+++++++|+|++++.++.+|.||++||+|+.++||+|-++..+.+.+.
T Consensus 13 g~~~~~~~l~~~~~~G~~~y~v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pIiYDvRarP~~i~S~tG 92 (290)
T KOG3090|consen 13 GPRGAGAGLKLLLIGGLGAYGVTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPIIYDVRARPRLISSPTG 92 (290)
T ss_pred CcchHHHHHHHHHHhchhhheecceeEeecCCceEEEEeccccchhccccCCceEeeeccccceeeeeccCcccccCCCC
Confidence 35577778888888888888889999999999999999999999988999999999999999999999999999999999
Q ss_pred ccCCCEEEEEEEEEEEeCCCChhhhhhc
Q psy5086 96 SKDLQMVNISLRVLARPDASKLPKMLCR 123 (124)
Q Consensus 96 T~D~~~V~vd~~V~yrv~~~~~~~i~~~ 123 (124)
|+|.|+|++...|.-|+++++++++|++
T Consensus 93 skDLQmVnI~lRVLsRP~~~~Lp~iyrt 120 (290)
T KOG3090|consen 93 SKDLQMVNIGLRVLSRPMADQLPEIYRT 120 (290)
T ss_pred CcceeEEEeeeEEecCCChhhhHHHHHH
Confidence 9999999999999999999999999985
No 3
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=99.87 E-value=2.3e-21 Score=160.52 Aligned_cols=87 Identities=17% Similarity=0.274 Sum_probs=74.1
Q ss_pred HHHHHHHHhhhcceEEecCCeEEEEEeccCceeeceeCCccEEecCccceeEEEEeeeEeeee-CCcccccCCCEEEEEE
Q psy5086 28 ALAGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKI-SSPTGSKDLQMVNISL 106 (124)
Q Consensus 28 ~~~~~~~~~l~ss~~~V~~ge~gVv~~rfGk~~~~~~~pGlhfkiP~i~~v~~~d~r~q~~~~-~~~~~T~D~~~V~vd~ 106 (124)
++++++++++++|+|+|+|+|+||++ |||++.. +++|||||++|||++|..+|++.+.... +..++|+|++.|+||+
T Consensus 84 i~~~~v~i~l~sg~yiV~e~E~gVV~-rFGk~~~-~l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~ 161 (419)
T PRK10930 84 AAAAVVIIWAASGFYTIKEAERGVVT-RFGKFSH-LVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVEM 161 (419)
T ss_pred HHHHHHHHHHHheEEEECCCeEEEEE-ECCcCcc-eeCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEEEE
Confidence 34444556788999999999999999 9999975 8999999999999999999998876432 3488999999999999
Q ss_pred EEEEEe-CCCC
Q psy5086 107 RVLARP-DASK 116 (124)
Q Consensus 107 ~V~yrv-~~~~ 116 (124)
+|+||| ||.+
T Consensus 162 ~VqYrI~Dp~~ 172 (419)
T PRK10930 162 NVQYRVTDPEK 172 (419)
T ss_pred EEEEEECCHHH
Confidence 999999 5433
No 4
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=99.86 E-value=4.8e-21 Score=153.45 Aligned_cols=82 Identities=21% Similarity=0.362 Sum_probs=73.2
Q ss_pred HHHHHhhhcceEEecCCeEEEEEeccCceeece------eCCccEEecCccceeEEEEeeeEeeeeCC-cccccCCCEEE
Q psy5086 31 GAAAYGVSQSMFTVEGGHRAIMFSRIGGVQNNV------FAEGLHFRLPWFQYPIIYDIRSRPRKISS-PTGSKDLQMVN 103 (124)
Q Consensus 31 ~~~~~~l~ss~~~V~~ge~gVv~~rfGk~~~~~------~~pGlhfkiP~i~~v~~~d~r~q~~~~~~-~~~T~D~~~V~ 103 (124)
+++++++++|+++|++||+||++ +||++.+.. ++||+||++||++++..+|+|.|+++.+. ++.|+|+++++
T Consensus 10 ~~~~~~l~~~~~iV~~ge~gVv~-~fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~~~V~ 88 (317)
T TIGR01932 10 VLLIVVLFQPFFIIKEGERGIIT-RFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEKKDII 88 (317)
T ss_pred HHHHHHHHheEEEECCCeEEEEE-ecCceeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCCCCEEE
Confidence 34455678999999999999998 999987533 38999999999999999999999998765 88999999999
Q ss_pred EEEEEEEEeC
Q psy5086 104 ISLRVLARPD 113 (124)
Q Consensus 104 vd~~V~yrv~ 113 (124)
+|++|+|||+
T Consensus 89 Vd~~V~yrV~ 98 (317)
T TIGR01932 89 IDTYIRWRIE 98 (317)
T ss_pred EEEEEEEEEC
Confidence 9999999996
No 5
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=99.85 E-value=3.9e-21 Score=142.86 Aligned_cols=83 Identities=64% Similarity=1.148 Sum_probs=76.5
Q ss_pred ceEEecCCeEEEEEeccCceee-ceeCCccEEecCccceeEEEEeeeEeeeeCCcccccCCCEEEEEEEEEEEeCCCChh
Q psy5086 40 SMFTVEGGHRAIMFSRIGGVQN-NVFAEGLHFRLPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLARPDASKLP 118 (124)
Q Consensus 40 s~~~V~~ge~gVv~~rfGk~~~-~~~~pGlhfkiP~i~~v~~~d~r~q~~~~~~~~~T~D~~~V~vd~~V~yrv~~~~~~ 118 (124)
|+++|++|++||++ +||+... .+++||+||++||++++..+|+|.|++++...+.|+|+++|++|++++|++++++++
T Consensus 1 ~~~~V~~g~~gVv~-~~g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~~ 79 (196)
T cd03401 1 SLYNVDGGHRAVLF-NRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQLP 79 (196)
T ss_pred CEEEECCCcEEEEE-EecCccccCccCCceEEEccccceeEEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHHH
Confidence 68999999999999 8998654 489999999999999999999999999988888999999999999999999999999
Q ss_pred hhhhc
Q psy5086 119 KMLCR 123 (124)
Q Consensus 119 ~i~~~ 123 (124)
.+|++
T Consensus 80 ~~~~~ 84 (196)
T cd03401 80 RIYQN 84 (196)
T ss_pred HHHHH
Confidence 88863
No 6
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.81 E-value=5.2e-20 Score=145.70 Aligned_cols=85 Identities=16% Similarity=0.331 Sum_probs=77.3
Q ss_pred hhcceEEecCCeEEEEEeccCceeeceeCCccEEecCccceeEEEEeeeEeeeeC-CcccccCCCEEEEE-EEEEEEeCC
Q psy5086 37 VSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKIS-SPTGSKDLQMVNIS-LRVLARPDA 114 (124)
Q Consensus 37 l~ss~~~V~~ge~gVv~~rfGk~~~~~~~pGlhfkiP~i~~v~~~d~r~q~~~~~-~~~~T~D~~~V~vd-~~V~yrv~~ 114 (124)
+++|+|+|++||+||++ |||++.+.+++|||||++||++++..+|+|.++.+.+ ..+.|+|++++++| +++.|++||
T Consensus 1 ~~ssv~iV~ege~gVV~-RfGkv~~~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp 79 (280)
T cd03406 1 LSSALHKIEEGHVGVYY-RGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIP 79 (280)
T ss_pred CCceEEEECCCeEEEEE-ECCcccccccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCH
Confidence 46899999999999999 9999976789999999999999999999999998875 47789999999999 579999999
Q ss_pred CChhhhhh
Q psy5086 115 SKLPKMLC 122 (124)
Q Consensus 115 ~~~~~i~~ 122 (124)
+++++.|+
T Consensus 80 ~~~~~~~~ 87 (280)
T cd03406 80 DSVYDIVK 87 (280)
T ss_pred HHHHHHHH
Confidence 99999875
No 7
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=99.80 E-value=2.4e-19 Score=139.33 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=67.9
Q ss_pred HHHHHHHhhhcceEEecCCeEEEEEeccCceeeceeCCccEEecCccceeEEE-EeeeEee------------ee-CCcc
Q psy5086 29 LAGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIY-DIRSRPR------------KI-SSPT 94 (124)
Q Consensus 29 ~~~~~~~~l~ss~~~V~~ge~gVv~~rfGk~~~~~~~pGlhfkiP~i~~v~~~-d~r~q~~------------~~-~~~~ 94 (124)
+++++++++++|+++|++||+||++ +||+++ .+++||+||++||++++..+ |++.++. .. +..+
T Consensus 3 ~~~~~~~~~~~s~~~V~~ge~gVV~-~fGk~~-~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (266)
T cd03404 3 AALLVILWLLSGFYIVQPGERGVVL-RFGKYS-RTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLM 80 (266)
T ss_pred HHHHHHHHHHcEEEEECCCceEEeE-EcCccc-cccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccce
Confidence 3344555678999999999999998 999998 58999999999999987654 4432211 11 2367
Q ss_pred cccCCCEEEEEEEEEEEeCCCCh
Q psy5086 95 GSKDLQMVNISLRVLARPDASKL 117 (124)
Q Consensus 95 ~T~D~~~V~vd~~V~yrv~~~~~ 117 (124)
.|+|++++++|+++.|||++...
T Consensus 81 ~T~D~~~v~vd~~v~yrI~d~~~ 103 (266)
T cd03404 81 LTGDENIVDVEFAVQYRISDPYD 103 (266)
T ss_pred EeCCCCEEEEEEEEEEEECCHHH
Confidence 89999999999999999965543
No 8
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.79 E-value=4e-19 Score=136.08 Aligned_cols=76 Identities=17% Similarity=0.247 Sum_probs=68.3
Q ss_pred ceEEecCCeEEEEEeccCceeeceeCCccEEecCccceeEEEEeeeEeeeeCC-cccccCCCEEEEEEEEEEEe-CCCCh
Q psy5086 40 SMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISS-PTGSKDLQMVNISLRVLARP-DASKL 117 (124)
Q Consensus 40 s~~~V~~ge~gVv~~rfGk~~~~~~~pGlhfkiP~i~~v~~~d~r~q~~~~~~-~~~T~D~~~V~vd~~V~yrv-~~~~~ 117 (124)
++|+|+|||+||++ |||++.+...+|||||++||++. ..+|+|.++++.+. ++.|+|++++.++++|.||| ||.++
T Consensus 1 g~~iV~~ge~~Vv~-rfGk~~~t~~~pGL~~~~P~~~~-~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~Dp~ka 78 (219)
T cd03402 1 GLFVVEPNQARVLV-LFGRYIGTIRRTGLRWVNPFSSK-KRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVDTAKA 78 (219)
T ss_pred CeEEECCCeeEEEE-EcCcCcccccCCceEEEeccceE-EEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcCHHHH
Confidence 68999999999998 99999875569999999999865 77999999998876 68999999999999999999 66554
No 9
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=99.77 E-value=1.1e-18 Score=133.52 Aligned_cols=73 Identities=27% Similarity=0.391 Sum_probs=67.6
Q ss_pred eEEecCCeEEEEEeccCceeeceeCCccEEecCccceeEEEEeeeEeeeeCC-cccccCCCEEEEEEEEEEEeCC
Q psy5086 41 MFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISS-PTGSKDLQMVNISLRVLARPDA 114 (124)
Q Consensus 41 ~~~V~~ge~gVv~~rfGk~~~~~~~pGlhfkiP~i~~v~~~d~r~q~~~~~~-~~~T~D~~~V~vd~~V~yrv~~ 114 (124)
+|+|++||+||++ ||||+.+.+++||+||++||++++..+|+|.+.++.+. ++.|+|++++++++++.|||++
T Consensus 1 ~~iV~~ge~~Vv~-~~Gk~~~~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d 74 (242)
T cd03405 1 LFIVDEGEQAVVL-RFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITD 74 (242)
T ss_pred CEEeCCCeEEEEE-EcCccccccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcC
Confidence 5899999999999 99999876799999999999999999999999988754 7899999999999999999964
No 10
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.74 E-value=6.4e-18 Score=131.78 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=67.0
Q ss_pred CCeEEEEEeccCceeeceeCCccEEecCccceeE-EEEeeeEeeeeCCcccccCCCEEEEEEEEEEEeCCCChhhhh
Q psy5086 46 GGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPI-IYDIRSRPRKISSPTGSKDLQMVNISLRVLARPDASKLPKML 121 (124)
Q Consensus 46 ~ge~gVv~~rfGk~~~~~~~pGlhfkiP~i~~v~-~~d~r~q~~~~~~~~~T~D~~~V~vd~~V~yrv~~~~~~~i~ 121 (124)
+||+||++ |||++++ +++||+||++||++++. .+|+|.++++++.+++|+|+++|++|++|+|||++.++++.|
T Consensus 1 q~~~~Vv~-rfGk~~~-~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~ 75 (262)
T cd03407 1 QSQVAIIE-RFGKFFK-VAWPGCHFVIPLVETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAF 75 (262)
T ss_pred CcEEEEEe-ecCcccc-cCCCCeEEEeccccceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHH
Confidence 58999998 9999986 89999999999999985 899999999998889999999999999999999887755443
No 11
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.74 E-value=1.4e-17 Score=118.63 Aligned_cols=73 Identities=25% Similarity=0.368 Sum_probs=68.3
Q ss_pred cceEEecCCeEEEEEeccCceeeceeCCccEEecCccceeEEEEeeeEeeeeCC-cccccCCCEEEEEEEEEEEeC
Q psy5086 39 QSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISS-PTGSKDLQMVNISLRVLARPD 113 (124)
Q Consensus 39 ss~~~V~~ge~gVv~~rfGk~~~~~~~pGlhfkiP~i~~v~~~d~r~q~~~~~~-~~~T~D~~~V~vd~~V~yrv~ 113 (124)
+|+++|+|||+||++ +||++.+ +++||+||++||++++..+|+|.++.+.+. .+.|+|++++++++++.||+.
T Consensus 1 ~~~~~V~~g~~~v~~-~~G~~~~-~~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~ 74 (160)
T smart00244 1 AAIKVVGEGEAGVVE-RLGRVLR-VLGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVL 74 (160)
T ss_pred CcEEEEcccEEEEEE-ecCcccc-ccCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEc
Confidence 589999999999998 9999987 899999999999999999999999998776 778999999999999999973
No 12
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=99.72 E-value=1.9e-17 Score=124.58 Aligned_cols=72 Identities=24% Similarity=0.347 Sum_probs=65.8
Q ss_pred ecCCeEEEEEeccCceeeceeCCccEEecCcccee-EEEEeeeEeeeeCC-cccccCCCEEEEEEEEEEEe-CCCCh
Q psy5086 44 VEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYP-IIYDIRSRPRKISS-PTGSKDLQMVNISLRVLARP-DASKL 117 (124)
Q Consensus 44 V~~ge~gVv~~rfGk~~~~~~~pGlhfkiP~i~~v-~~~d~r~q~~~~~~-~~~T~D~~~V~vd~~V~yrv-~~~~~ 117 (124)
|+|||+||++ |||++.+ +++||+||++||++++ ..+|+|.|+++++. ++.|+|++++.+++++.||| ||.+.
T Consensus 1 V~~ge~~Vv~-~~G~~~~-~~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~ 75 (215)
T cd03403 1 VPQYERGVVE-RLGKYHR-TLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVDPVKA 75 (215)
T ss_pred CCcceEEEEE-EcCcCcc-ccCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEecHHHH
Confidence 6899999999 9999986 6999999999999999 99999999999876 68999999999999999999 56543
No 13
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=99.71 E-value=3.7e-17 Score=126.87 Aligned_cols=71 Identities=17% Similarity=0.327 Sum_probs=62.5
Q ss_pred eEEecCCeEEEEEeccCceeeceeCCccEEecCccceeEEEEeeeEeeee-CCcccccCCCEEEEEEEEEEEeC
Q psy5086 41 MFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKI-SSPTGSKDLQMVNISLRVLARPD 113 (124)
Q Consensus 41 ~~~V~~ge~gVv~~rfGk~~~~~~~pGlhfkiP~i~~v~~~d~r~q~~~~-~~~~~T~D~~~V~vd~~V~yrv~ 113 (124)
+|+|++||+||++ |||++.+ +++||+||++||++++..+|+|.+.... +..+.|+|++.|++|++|+|||+
T Consensus 1 ~~iV~~ge~~Vv~-~fGk~~~-~l~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~ 72 (261)
T TIGR01933 1 IYTIGEAERGVVL-RFGKYHR-TVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRIT 72 (261)
T ss_pred CEEeCCCeEEEEE-EcCcccc-ccCCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEEC
Confidence 5899999999999 9999875 8999999999999999999998654222 23588999999999999999995
No 14
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.1e-16 Score=124.07 Aligned_cols=86 Identities=24% Similarity=0.418 Sum_probs=73.2
Q ss_pred HHHHHHHhhhcceEEecCCeEEEEEeccCceeeceeC-CccEEecCc---c-ceeEEEEeeeEeeee-CC-cccccCCCE
Q psy5086 29 LAGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQNNVFA-EGLHFRLPW---F-QYPIIYDIRSRPRKI-SS-PTGSKDLQM 101 (124)
Q Consensus 29 ~~~~~~~~l~ss~~~V~~ge~gVv~~rfGk~~~~~~~-pGlhfkiP~---i-~~v~~~d~r~q~~~~-~~-~~~T~D~~~ 101 (124)
+++++++++++++++|++++++++. |||++.+ +.+ ||+||++|| + +.+...+.|.++++. +. .+.|+|++.
T Consensus 9 ~l~~~~~~~~~~~~~v~~~~~~vv~-r~G~~~~-~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~ 86 (291)
T COG0330 9 LLVILIVLLFSSIFVVKEGERGVVL-RFGRYTR-TLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVI 86 (291)
T ss_pred HHHHHHHHHHceeEEEcCCceEEEE-Eecceee-ecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCE
Confidence 4455556788999999999999998 9999987 667 999999999 3 333678889999998 44 899999999
Q ss_pred EEEEEEEEEEeCCCC
Q psy5086 102 VNISLRVLARPDASK 116 (124)
Q Consensus 102 V~vd~~V~yrv~~~~ 116 (124)
|++|.+|+||+++.+
T Consensus 87 V~vd~~v~~rv~d~~ 101 (291)
T COG0330 87 VSVDAVVQYRVTDPQ 101 (291)
T ss_pred EEEEEEEEEEEcCHH
Confidence 999999999996655
No 15
>KOG3083|consensus
Probab=99.69 E-value=1.5e-17 Score=127.60 Aligned_cols=95 Identities=51% Similarity=0.867 Sum_probs=88.9
Q ss_pred HHHHHHHhhhcceEEecCCeEEEEEeccCceeeceeCCccEEecCccceeEEEEeeeEeeeeCCcccccCCCEEEEEEEE
Q psy5086 29 LAGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRV 108 (124)
Q Consensus 29 ~~~~~~~~l~ss~~~V~~ge~gVv~~rfGk~~~~~~~pGlhfkiP~i~~v~~~d~r~q~~~~~~~~~T~D~~~V~vd~~V 108 (124)
.++++.-++-+++|.|+.|+++|+++||.++++.+.++|-||.+||.++.+.||.|.++..++..+.|||.|+|++.+.+
T Consensus 15 ~l~v~~~~~~s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw~qk~~i~d~rs~p~~v~~itGskdLQ~VniTlri 94 (271)
T KOG3083|consen 15 ALAVAGGVVNSALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRI 94 (271)
T ss_pred hhHHhhhhhhhhhcccCCCceeEEeecccchhhhcccCCceeeeeeccCcEEEeccCCCcccccccCchhhhcccceEEE
Confidence 34445556789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCChhhhhhc
Q psy5086 109 LARPDASKLPKMLCR 123 (124)
Q Consensus 109 ~yrv~~~~~~~i~~~ 123 (124)
.+|+.++++|.||++
T Consensus 95 l~rp~~sqLP~If~~ 109 (271)
T KOG3083|consen 95 LFRPVVSQLPCIFTS 109 (271)
T ss_pred EecccccccchHHHh
Confidence 999999999999985
No 16
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.59 E-value=3.3e-16 Score=113.19 Aligned_cols=69 Identities=29% Similarity=0.516 Sum_probs=29.9
Q ss_pred EEecCCeEEEEEeccCceeeceeCCccEEecCccceeEEEEeeeEeeeeCC---cccccCCCEEEEEEEEEEEe
Q psy5086 42 FTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISS---PTGSKDLQMVNISLRVLARP 112 (124)
Q Consensus 42 ~~V~~ge~gVv~~rfGk~~~~~~~pGlhfkiP~i~~v~~~d~r~q~~~~~~---~~~T~D~~~V~vd~~V~yrv 112 (124)
|+|++||+||++ ++|++.+ +++||+||++||++++..+|++.+++++.. .+.|+|+.++++++++.||+
T Consensus 1 ~~V~~g~~~V~~-~~G~~~~-~~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i 72 (179)
T PF01145_consen 1 YTVPPGEVGVVV-RFGKVKD-VLGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRI 72 (179)
T ss_dssp ---------------------------------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEE
T ss_pred CEeCCCEEEEEE-ECCeEeE-EECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEe
Confidence 689999999999 8999987 899999999999999999999999999987 89999999999999999999
No 17
>KOG2621|consensus
Probab=99.57 E-value=2.6e-15 Score=118.05 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=72.3
Q ss_pred HhhhcceEEecCCeEEEEEeccCcee-eceeCCccEEecCccceeEEEEeeeEeeeeCC-cccccCCCEEEEEEEEEEEe
Q psy5086 35 YGVSQSMFTVEGGHRAIMFSRIGGVQ-NNVFAEGLHFRLPWFQYPIIYDIRSRPRKISS-PTGSKDLQMVNISLRVLARP 112 (124)
Q Consensus 35 ~~l~ss~~~V~~ge~gVv~~rfGk~~-~~~~~pGlhfkiP~i~~v~~~d~r~q~~~~~~-~~~T~D~~~V~vd~~V~yrv 112 (124)
+-++.|+.+|++.|++|++ |+|... ....+||+.|.+|+||+..++|+|++.++++. +.+|+|..++.+|+.|+||+
T Consensus 49 ~S~~fclKiv~eYeR~VIf-RLGRl~~~~~rGPGi~fvlPCIDt~~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri 127 (288)
T KOG2621|consen 49 ISIWFCLKIVQEYERAVIF-RLGRLRTGGARGPGLFFLLPCIDTFRKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRI 127 (288)
T ss_pred HHHHHHHHhhHHHhhhhhe-eeeeccccCCCCCCeEEEecccceeeeeeeeEEeecCCHHHHhcccceEEEeceEEEEEe
Confidence 3467899999999999999 999985 45789999999999999999999999999998 89999999999999999999
Q ss_pred C
Q psy5086 113 D 113 (124)
Q Consensus 113 ~ 113 (124)
.
T Consensus 128 ~ 128 (288)
T KOG2621|consen 128 S 128 (288)
T ss_pred c
Confidence 4
No 18
>KOG2962|consensus
Probab=99.11 E-value=1.4e-10 Score=90.13 Aligned_cols=95 Identities=15% Similarity=0.270 Sum_probs=75.5
Q ss_pred HHHHHHHHhhhcceEEecCCeEEEEEeccCceeeceeCCccEEecCccceeEEEEeeeEeeeeCC-cccccCCCEEEEEE
Q psy5086 28 ALAGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISS-PTGSKDLQMVNISL 106 (124)
Q Consensus 28 ~~~~~~~~~l~ss~~~V~~ge~gVv~~rfGk~~~~~~~pGlhfkiP~i~~v~~~d~r~q~~~~~~-~~~T~D~~~V~vd~ 106 (124)
+++++++.++++++..|++|+.||.+ |-|..-..+.+||+|+++|||.++..+.+..|+.+... .++|+.|..+..|=
T Consensus 10 ~~~a~~~~~~~s~vHkieEGHvgvYy-RGGALL~~~t~PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyfdr 88 (322)
T KOG2962|consen 10 AAIALLVAFLSSAVHKIEEGHVGVYY-RGGALLTSITGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYFDR 88 (322)
T ss_pred HHHHHHHHHHHHHHhhcccCceEEEE-ecceeeeccCCCCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEEEEEeh
Confidence 33444555678899999999999999 98887767999999999999999999999999988765 89999999988762
Q ss_pred -EEEEEeCCCChhhhhhc
Q psy5086 107 -RVLARPDASKLPKMLCR 123 (124)
Q Consensus 107 -~V~yrv~~~~~~~i~~~ 123 (124)
-|--++.|+.+.++.+|
T Consensus 89 IEVVN~L~~d~Vydiv~N 106 (322)
T KOG2962|consen 89 IEVVNFLRPDAVYDIVKN 106 (322)
T ss_pred hhhhhhhchhHHHHHHHH
Confidence 23333556666666554
No 19
>KOG2620|consensus
Probab=99.06 E-value=8.7e-12 Score=97.82 Aligned_cols=72 Identities=21% Similarity=0.211 Sum_probs=59.4
Q ss_pred EecCCeEEEEEeccCceeeceeCCccEEecCccceeEE-EEeee-EeeeeCCcccccCCCEEEEEEEEEEEe-CCCC
Q psy5086 43 TVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPII-YDIRS-RPRKISSPTGSKDLQMVNISLRVLARP-DASK 116 (124)
Q Consensus 43 ~V~~ge~gVv~~rfGk~~~~~~~pGlhfkiP~i~~v~~-~d~r~-q~~~~~~~~~T~D~~~V~vd~~V~yrv-~~~~ 116 (124)
.|++.+++|+. ||||+.+ +++||+||..|+++++.- .+++. +..+...++.|+|+..+.+|.+++||+ ||.+
T Consensus 11 ~VpQ~~a~VvE-R~GkF~~-iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv~dp~~ 85 (301)
T KOG2620|consen 11 FVPQQEAAVVE-RFGKFHR-ILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRVVDPYA 85 (301)
T ss_pred eechhHhHHHH-Hhhhhhh-hcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEEecccc
Confidence 49999999995 9999986 999999999999998753 34433 333444589999999999999999998 6555
No 20
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=98.97 E-value=1.8e-09 Score=80.52 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=59.9
Q ss_pred hhcceEEecCCeEEEEEeccCceeeceeCC-ccEEe---cCccce---------------eEEEEeeeEeeee-------
Q psy5086 37 VSQSMFTVEGGHRAIMFSRIGGVQNNVFAE-GLHFR---LPWFQY---------------PIIYDIRSRPRKI------- 90 (124)
Q Consensus 37 l~ss~~~V~~ge~gVv~~rfGk~~~~~~~p-Glhfk---iP~i~~---------------v~~~d~r~q~~~~------- 90 (124)
-.+|.++|+|||.||++ ++|++.+ +++| |+|++ +|++++ +..+|.|.+....
T Consensus 12 ~~~s~~iV~e~~~av~~-~~Gk~~~-~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 89 (207)
T cd03408 12 KNGSQLIVREGQAAVFV-NEGKVAD-VFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAPV 89 (207)
T ss_pred ccCCEEEEcCCcEEEEE-ECCEEEE-EecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCCe
Confidence 46799999999999999 9999987 4555 55566 666543 6678888776532
Q ss_pred CCcccccCCCEEEEEEEEEEEe-CCCCh
Q psy5086 91 SSPTGSKDLQMVNISLRVLARP-DASKL 117 (124)
Q Consensus 91 ~~~~~T~D~~~V~vd~~V~yrv-~~~~~ 117 (124)
.....|+|+.++.++.++.||| ||.++
T Consensus 90 ~~~~~~~~~v~v~v~~~~~~kI~Dp~~~ 117 (207)
T cd03408 90 FGRDSEFGGVPLRAFGTYSLKVTDPVLF 117 (207)
T ss_pred eeeCCccceEEEEeeEEEEEEEcCHHHH
Confidence 1234578899999999999999 66544
No 21
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.38 E-value=2.9e-06 Score=72.66 Aligned_cols=76 Identities=13% Similarity=0.146 Sum_probs=58.9
Q ss_pred cceEEecCCeEEEEEeccC--------ceeeceeCCccEEecCccceeEEEEeeeEeeeeC-CcccccCCCEEEEEEEEE
Q psy5086 39 QSMFTVEGGHRAIMFSRIG--------GVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKIS-SPTGSKDLQMVNISLRVL 109 (124)
Q Consensus 39 ss~~~V~~ge~gVv~~rfG--------k~~~~~~~pGlhfkiP~i~~v~~~d~r~q~~~~~-~~~~T~D~~~V~vd~~V~ 109 (124)
..+|+..+...+++. .++ +....+.-+|.||.+|++++...+|+++.+.+.. ..+.|+|+.++++++..+
T Consensus 32 ~~~y~~a~~~~aLI~-~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~ 110 (548)
T COG2268 32 KRFYIIARPNEALIR-TGSKLGSKDEAGGGQKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAY 110 (548)
T ss_pred heeEEecCCCceEEE-eccccCCcccccCCccEEecCceEEecceeeeEEeeeeeeeeeeeeeeeEecCCCccceeEEEE
Confidence 377766666666664 342 3333488999999999999999999999998888 588999999999888777
Q ss_pred EEeCCC
Q psy5086 110 ARPDAS 115 (124)
Q Consensus 110 yrv~~~ 115 (124)
-++.++
T Consensus 111 v~i~~~ 116 (548)
T COG2268 111 VKIGDT 116 (548)
T ss_pred EEecCC
Confidence 776443
No 22
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=98.25 E-value=1.1e-06 Score=60.91 Aligned_cols=44 Identities=18% Similarity=0.123 Sum_probs=40.3
Q ss_pred EEEeeeEeeeeCCcccccCCCEEEEEEEEEEEeCCCChhhhhhc
Q psy5086 80 IYDIRSRPRKISSPTGSKDLQMVNISLRVLARPDASKLPKMLCR 123 (124)
Q Consensus 80 ~~d~r~q~~~~~~~~~T~D~~~V~vd~~V~yrv~~~~~~~i~~~ 123 (124)
.||+|.++.+.+.++.|+|++++.+|++|+|||++++++.+|++
T Consensus 2 ~~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~ 45 (124)
T cd03400 2 EYSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSK 45 (124)
T ss_pred cccceeeecccceEEECCCCCEEEEEEEEEEEEChhhHHHHHHH
Confidence 47899999988889999999999999999999999999988864
No 23
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=97.41 E-value=0.00022 Score=49.63 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=32.2
Q ss_pred EEeeeEeeeeCC-cccccCCCEEEEEEEEEEEeCCCC
Q psy5086 81 YDIRSRPRKISS-PTGSKDLQMVNISLRVLARPDASK 116 (124)
Q Consensus 81 ~d~r~q~~~~~~-~~~T~D~~~V~vd~~V~yrv~~~~ 116 (124)
.|+|.+.++++. ++.|+|++++++|+++.|||.++.
T Consensus 2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~~ 38 (128)
T cd03399 2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTE 38 (128)
T ss_pred ccccceeeeccccceecCCCcEEEEEEEEEEEeCCCH
Confidence 478999999886 789999999999999999997665
No 24
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=95.26 E-value=0.033 Score=36.73 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=25.8
Q ss_pred eeEeeeeC-CcccccCCCEEEEEEEEEEEeCCCC
Q psy5086 84 RSRPRKIS-SPTGSKDLQMVNISLRVLARPDASK 116 (124)
Q Consensus 84 r~q~~~~~-~~~~T~D~~~V~vd~~V~yrv~~~~ 116 (124)
+.++.+.. ..+.|+|++++.+++++.|||++..
T Consensus 5 ~~~~~~~~~~~~~t~d~~~i~~~~~~~~~v~~~~ 38 (121)
T cd02106 5 RRQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPV 38 (121)
T ss_pred eeEEecCCCceEEecCCCEEEEEEEEEEEEeCHH
Confidence 33444333 3788999999999999999998776
No 25
>KOG2668|consensus
Probab=94.55 E-value=0.16 Score=42.16 Aligned_cols=74 Identities=8% Similarity=0.137 Sum_probs=55.9
Q ss_pred EEecCCeEEEEEeccCceeeceeCCccEEecCccceeEEEEeeeEeeeeCCc-ccccCCCEEEEEEEEEEEeCCCChhh
Q psy5086 42 FTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISSP-TGSKDLQMVNISLRVLARPDASKLPK 119 (124)
Q Consensus 42 ~~V~~ge~gVv~~rfGk~~~~~~~pGlhfkiP~i~~v~~~d~r~q~~~~~~~-~~T~D~~~V~vd~~V~yrv~~~~~~~ 119 (124)
++-.+.+.-++. -|++.+..+.+| .|.+|| +++..+|+.+-++++..+ +.|+.+.++.+....+-.|..++..+
T Consensus 3 ~~~~~~~~l~it--g~g~~~~~lv~~-~wvf~w-q~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e 77 (428)
T KOG2668|consen 3 KVAGASQYLAIT--GGGIEDIKLVKK-SWVFPW-QQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE 77 (428)
T ss_pred ccCCccceEEee--cccccCceeccc-ceeeee-eeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence 344566666664 455555445555 578899 999999999999998885 89999999999998888886666444
No 26
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=84.86 E-value=1.3 Score=33.85 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=28.1
Q ss_pred hcceEEecCCeEEEEEeccCceeeceeCCccEEe
Q psy5086 38 SQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFR 71 (124)
Q Consensus 38 ~ss~~~V~~ge~gVv~~rfGk~~~~~~~pGlhfk 71 (124)
..|-.+|++||.+|.+ +-|++.+ ..+||-|-.
T Consensus 13 ~GS~LiV~egQ~Avfv-~~G~i~d-~~~pG~y~l 44 (211)
T PF13421_consen 13 NGSQLIVREGQCAVFV-NDGKIAD-VFGPGRYTL 44 (211)
T ss_pred CCCEEEECCCCEEEEE-ECCEEEE-EecCceEEE
Confidence 4577899999999999 8999988 899998864
No 27
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=65.19 E-value=6.7 Score=23.03 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=11.6
Q ss_pred hhHHHHhhhhcCCCC
Q psy5086 3 QSKLNDFAGRFGKGP 17 (124)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (124)
++..++...|+.+++
T Consensus 2 ~s~~~~~~~~f~~nk 16 (56)
T PF12911_consen 2 RSPWKDAWRRFRRNK 16 (56)
T ss_pred CCHHHHHHHHHHhCc
Confidence 466778888888877
No 28
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=56.40 E-value=35 Score=28.58 Aligned_cols=35 Identities=3% Similarity=-0.146 Sum_probs=20.0
Q ss_pred HhhhhcCCCCCCchhhHHHHHHHHHHHHhhhcceE
Q psy5086 8 DFAGRFGKGPKGVGVGLKLAALAGAAAYGVSQSMF 42 (124)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ss~~ 42 (124)
|=.+=+.++|++....+.++++++++++++|+++.
T Consensus 7 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~WA~~~ 41 (457)
T TIGR01000 7 ESSEFYQKRYHNFSTLVIVPIFLLLVFLVLFSLFA 41 (457)
T ss_pred hHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHhE
Confidence 33344556777777666555555555555565544
No 29
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=38.74 E-value=17 Score=23.99 Aligned_cols=16 Identities=25% Similarity=0.582 Sum_probs=10.3
Q ss_pred hhhHHHHhhhhcCCCC
Q psy5086 2 AQSKLNDFAGRFGKGP 17 (124)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (124)
|..+|..+-++++...
T Consensus 11 ~~~~Lr~~c~~Lsp~~ 26 (85)
T PF13150_consen 11 ADDRLRRYCGRLSPKQ 26 (85)
T ss_pred HHHHHHHHHhcCCHHH
Confidence 4456777777776544
No 30
>PF01043 SecA_PP_bind: SecA preprotein cross-linking domain; InterPro: IPR011130 The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain [].; GO: 0017038 protein import, 0016020 membrane; PDB: 3DIN_B 3JUX_A 3IQY_A 2IBM_A 3DL8_A 3JV2_B 3IQM_A 1TF2_A 1TF5_A 1M74_A ....
Probab=34.85 E-value=22 Score=24.54 Aligned_cols=28 Identities=25% Similarity=0.576 Sum_probs=20.0
Q ss_pred eEEecCCeEEEEEeccCc-ee-eceeCCccE
Q psy5086 41 MFTVEGGHRAIMFSRIGG-VQ-NNVFAEGLH 69 (124)
Q Consensus 41 ~~~V~~ge~gVv~~rfGk-~~-~~~~~pGlh 69 (124)
=|+|..|++-+| +.|-| +. +.-++.|||
T Consensus 80 dYiV~dg~V~IV-De~TGR~m~gRrws~GLH 109 (113)
T PF01043_consen 80 DYIVRDGEVVIV-DEFTGRIMPGRRWSDGLH 109 (113)
T ss_dssp SEEEETTEEEEB-CTTTTSEBTT--STTTHH
T ss_pred ceEEEcCEEEEE-ECCCCCcCCCCcCCchhh
Confidence 389999999999 67754 43 346788887
No 31
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=30.65 E-value=3.1e+02 Score=22.60 Aligned_cols=73 Identities=14% Similarity=0.136 Sum_probs=47.1
Q ss_pred cceEEecCCeEEEEEeccCceeeceeCCccE-------------------EecCccceeEEEEeeeEe-eeeCC--cccc
Q psy5086 39 QSMFTVEGGHRAIMFSRIGGVQNNVFAEGLH-------------------FRLPWFQYPIIYDIRSRP-RKISS--PTGS 96 (124)
Q Consensus 39 ss~~~V~~ge~gVv~~rfGk~~~~~~~pGlh-------------------fkiP~i~~v~~~d~r~q~-~~~~~--~~~T 96 (124)
.|..+|.+++-++.. .-|++.+..-++|.. |.-|+-+.|+-++++++. +.+.. ...=
T Consensus 39 Gs~l~Vrp~qmamfv-n~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eVyfvntqe~~girwGT~qpin~ 117 (345)
T COG4260 39 GSILHVRPNQMAMFV-NGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEVYFVNTQEIKGIRWGTPQPINY 117 (345)
T ss_pred CcEEEEecCceEEEE-cCCEEEeeecCCceeEeeecccchhhhhhcceecCCCcccceEEEEecceecceecCCCCCeec
Confidence 578899999999998 678888766668863 223555666777777665 44432 1111
Q ss_pred cC-----CCEEEEEEEEEEEe
Q psy5086 97 KD-----LQMVNISLRVLARP 112 (124)
Q Consensus 97 ~D-----~~~V~vd~~V~yrv 112 (124)
.| ...+...-+..|+|
T Consensus 118 ~dn~~~g~l~lRa~Gtys~kv 138 (345)
T COG4260 118 FDNFYNGELFLRAHGTYSIKV 138 (345)
T ss_pred ccccccceeEEeecceEEEEe
Confidence 22 34556666777777
No 32
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=30.60 E-value=54 Score=18.53 Aligned_cols=20 Identities=25% Similarity=0.026 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHhhhcceE
Q psy5086 23 GLKLAALAGAAAYGVSQSMF 42 (124)
Q Consensus 23 ~~~~~~~~~~~~~~l~ss~~ 42 (124)
.+-+++++++++.++++|++
T Consensus 18 SLy~GlLlifvl~vLFssYf 37 (39)
T PRK00753 18 SLYLGLLLVFVLGILFSSYF 37 (39)
T ss_pred hHHHHHHHHHHHHHHHHhhc
Confidence 45566566666666777754
No 33
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=27.90 E-value=59 Score=21.58 Aligned_cols=10 Identities=10% Similarity=-0.363 Sum_probs=3.9
Q ss_pred HHHHHHhhhc
Q psy5086 30 AGAAAYGVSQ 39 (124)
Q Consensus 30 ~~~~~~~l~s 39 (124)
|+++++++++
T Consensus 36 IIiLlImlfq 45 (85)
T PF10717_consen 36 IIILLIMLFQ 45 (85)
T ss_pred HHHHHHHHHh
Confidence 3333334443
No 34
>PF07509 DUF1523: Protein of unknown function (DUF1523); InterPro: IPR011088 This entry is represented by Bacteriophage phiNM3, A0EWY4 from SWISSPROT. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are restricted to the Gammaproteobacteria and Epsilonproteobacteria, the function of these proteins is unknown.
Probab=27.05 E-value=1.2e+02 Score=22.78 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=12.9
Q ss_pred CccEEecCccceeEEEEeeeEeee
Q psy5086 66 EGLHFRLPWFQYPIIYDIRSRPRK 89 (124)
Q Consensus 66 pGlhfkiP~i~~v~~~d~r~q~~~ 89 (124)
..+|+.+|-.|.+.+.++.++.+|
T Consensus 19 ~~lhY~lP~~dvvrItgtevkR~d 42 (175)
T PF07509_consen 19 AFLHYTLPQYDVVRITGTEVKRMD 42 (175)
T ss_pred HHeeccCCcceEEEEeceEEEEec
Confidence 345666665555555555555543
No 35
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=26.75 E-value=1.2e+02 Score=25.07 Aligned_cols=39 Identities=21% Similarity=0.149 Sum_probs=22.3
Q ss_pred hHHHHhhhhcCC-----CCCCchhh---------HHHHHHHHHHHHhhhcceE
Q psy5086 4 SKLNDFAGRFGK-----GPKGVGVG---------LKLAALAGAAAYGVSQSMF 42 (124)
Q Consensus 4 ~~~~~~~~~~~~-----~~~~~~~~---------~~~~~~~~~~~~~l~ss~~ 42 (124)
++|+.++.+.+- ..+|.+.+ +.+++++.+++++++|++.
T Consensus 53 ~~lr~iarkt~~rv~I~~r~GlpF~~~r~~kRk~~~~G~~~f~~ll~~lS~fI 105 (382)
T TIGR02876 53 KKLKPIARKTGCKVKIIARKGLPFLFKRLRKRPGILIGILLFLAIVYFLSNFI 105 (382)
T ss_pred HHHHHHHHHhCCEEEEECCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhheE
Confidence 567777777665 35566643 4455555555555555553
No 36
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX. Proteins similar to Lactococcus lactis lacX are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=26.48 E-value=1.3e+02 Score=23.47 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=27.4
Q ss_pred CccEEecCccceeEEEEeeeEeeeeCCcccccCCCEEEEEEEEEEEeCCCCh
Q psy5086 66 EGLHFRLPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLARPDASKL 117 (124)
Q Consensus 66 pGlhfkiP~i~~v~~~d~r~q~~~~~~~~~T~D~~~V~vd~~V~yrv~~~~~ 117 (124)
-|+....|| ++...+...-++.+.....+.++-+-+.++.+.|+++.+.+
T Consensus 71 HGf~r~~~w--~v~~~~~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~~~L 120 (288)
T cd09024 71 HGFARDMEF--EVVEQSDDSVTFELTDNEETLKVYPFDFELRVTYTLEGNTL 120 (288)
T ss_pred CCCcccCce--EEEEccCCEEEEEEccCcchhhcCCeEEEEEEEEEEeCCEE
Confidence 477777777 22221111122222222234556788888888888875544
No 37
>KOG4737|consensus
Probab=26.38 E-value=82 Score=25.65 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhhcceEEecCCeEEEEEeccCc
Q psy5086 24 LKLAALAGAAAYGVSQSMFTVEGGHRAIMFSRIGG 58 (124)
Q Consensus 24 ~~~~~~~~~~~~~l~ss~~~V~~ge~gVv~~rfGk 58 (124)
++++++++++++.+.-.+-..+||.-.+++ |...
T Consensus 287 Lw~mvil~lali~i~y~ia~mDPg~DSIIY-RMTt 320 (326)
T KOG4737|consen 287 LWLMVILVLALIYIVYGIASMDPGKDSIIY-RMTT 320 (326)
T ss_pred HHHHHHHHHHHHHHHhhhhccCCCcceeEE-Eecc
Confidence 445555555555566677789999999999 8653
No 38
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=25.77 E-value=39 Score=20.84 Aligned_cols=16 Identities=6% Similarity=-0.245 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHhhh
Q psy5086 23 GLKLAALAGAAAYGVS 38 (124)
Q Consensus 23 ~~~~~~~~~~~~~~l~ 38 (124)
++.+++++++++++++
T Consensus 40 ~i~~~~~i~~l~v~~~ 55 (59)
T PF09889_consen 40 YIFFGIFILFLAVWIF 55 (59)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555554444433
No 39
>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion]
Probab=25.66 E-value=64 Score=28.29 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=11.5
Q ss_pred hhHHHHhhhhcCCCCC
Q psy5086 3 QSKLNDFAGRFGKGPK 18 (124)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (124)
..|+.++++++++.++
T Consensus 9 ~~k~~~~~~~~~~~~k 24 (545)
T COG1766 9 LKKLKEFWGKLTKKQK 24 (545)
T ss_pred HHHHHHHHhhhhhhHH
Confidence 3567778888888773
No 40
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=22.36 E-value=64 Score=24.97 Aligned_cols=7 Identities=14% Similarity=-0.168 Sum_probs=2.5
Q ss_pred Hhhhcce
Q psy5086 35 YGVSQSM 41 (124)
Q Consensus 35 ~~l~ss~ 41 (124)
+++++.|
T Consensus 29 iva~~lf 35 (217)
T PF07423_consen 29 IVAYQLF 35 (217)
T ss_pred HHhhhhe
Confidence 3333333
No 41
>CHL00038 psbL photosystem II protein L
Probab=21.05 E-value=88 Score=17.61 Aligned_cols=20 Identities=15% Similarity=-0.044 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHhhhcceE
Q psy5086 23 GLKLAALAGAAAYGVSQSMF 42 (124)
Q Consensus 23 ~~~~~~~~~~~~~~l~ss~~ 42 (124)
.+-+++++++++.+++++++
T Consensus 17 SLy~GLLlifvl~vlfssyf 36 (38)
T CHL00038 17 SLYWGLLLIFVLAVLFSNYF 36 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555666653
No 42
>PHA02513 V1 structural protein V1; Reviewed
Probab=20.80 E-value=1.8e+02 Score=20.50 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=15.1
Q ss_pred hHHHHhhhhcCCCCCCchhhHH
Q psy5086 4 SKLNDFAGRFGKGPKGVGVGLK 25 (124)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~ 25 (124)
||+-+.+++++|-.+|.+.-+.
T Consensus 47 ~~fveva~~npkltkge~~n~k 68 (135)
T PHA02513 47 RRFVEVAKANPKLTKGEGTNIG 68 (135)
T ss_pred HHHHHHHhcCCcccccccccHH
Confidence 5666788888887667665433
No 43
>PF07850 Renin_r: Renin receptor-like protein; InterPro: IPR012493 The sequences featured in this family are similar to a region of the human renin receptor (Q8NG15 from SWISSPROT) that bears a putative transmembrane spanning segment []. The renin receptor is involved in intracellular signal transduction by the activation of the ERK1/ERK2 pathway, and it also serves to increase the efficiency of angiotensinogen cleavage by receptor-bound renin, therefore facilitating angiotensin II generation and action on a cell surface []. ; GO: 0004872 receptor activity, 0016021 integral to membrane; PDB: 3LC8_A 3LBS_A.
Probab=20.61 E-value=6.9 Score=26.70 Aligned_cols=33 Identities=18% Similarity=0.453 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhhhcceEEecCCeEEEEEeccC
Q psy5086 24 LKLAALAGAAAYGVSQSMFTVEGGHRAIMFSRIG 57 (124)
Q Consensus 24 ~~~~~~~~~~~~~l~ss~~~V~~ge~gVv~~rfG 57 (124)
+++.++++++++.+.-++...+||.-.+++ |..
T Consensus 59 LW~~v~l~~all~i~~~m~~mDPGrDSIIY-Rmt 91 (98)
T PF07850_consen 59 LWFSVVLALALLAICYAMWNMDPGRDSIIY-RMT 91 (98)
T ss_dssp -----------------------TTTSGGG-S--
T ss_pred HHHHHHHHHHHHHHHHHheecCCCCceEEE-Eec
Confidence 344455555555555566688999888877 654
No 44
>PRK11118 putative monooxygenase; Provisional
Probab=20.11 E-value=51 Score=22.57 Aligned_cols=12 Identities=8% Similarity=-0.033 Sum_probs=10.0
Q ss_pred eCCccEEecCcc
Q psy5086 64 FAEGLHFRLPWF 75 (124)
Q Consensus 64 ~~pGlhfkiP~i 75 (124)
.+||+.||+.-.
T Consensus 32 ~EpGliWKIWTe 43 (100)
T PRK11118 32 EEPGFIWKIWTE 43 (100)
T ss_pred cCCCceEEEeec
Confidence 689999999663
Done!