Query psy5086
Match_columns 124
No_of_seqs 128 out of 1016
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 16:57:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5086.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5086hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fvg_A Stomatin; mixed alpha-b 98.7 6.8E-09 2.3E-13 72.5 3.3 46 70-115 3-50 (133)
2 3bk6_A PH stomatin; archaea, t 98.0 2E-06 7E-11 62.6 2.6 41 74-114 2-43 (188)
3 1win_A Flotillin 2; BAND 7 dom 98.0 1.7E-06 5.7E-11 60.9 1.6 44 74-117 3-49 (143)
4 2rpb_A Hypothetical membrane p 97.8 1.2E-05 4.3E-10 53.7 3.5 38 80-117 4-43 (113)
5 2imq_X Salivary nitrophorin; f 18.8 1.8E+02 0.0062 21.3 4.9 39 71-109 237-281 (282)
6 3arc_L Photosystem II reaction 18.3 47 0.0016 17.8 1.1 19 23-41 16-34 (37)
7 1fme_A FSD-EY peptide; beta-BE 16.0 88 0.003 15.3 1.7 13 3-15 15-27 (28)
8 2xsw_A 72 kDa inositol polypho 12.3 4.1E+02 0.014 20.5 5.6 45 71-115 277-327 (357)
9 1zoy_C Large cytochrome bindin 9.4 2.8E+02 0.0097 18.5 3.3 14 2-15 5-18 (140)
10 2h88_C Succinate dehydrogenase 9.3 2.9E+02 0.01 18.4 3.3 14 2-15 5-18 (140)
No 1
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=98.71 E-value=6.8e-09 Score=72.51 Aligned_cols=46 Identities=20% Similarity=0.158 Sum_probs=32.2
Q ss_pred EecCccceeEEEEeeeEeeeeCC-cccccCCCEEEEEEEEEEEe-CCC
Q psy5086 70 FRLPWFQYPIIYDIRSRPRKISS-PTGSKDLQMVNISLRVLARP-DAS 115 (124)
Q Consensus 70 fkiP~i~~v~~~d~r~q~~~~~~-~~~T~D~~~V~vd~~V~yrv-~~~ 115 (124)
++.||||++.++|+|+++++++. +++|+|++.+.+|++++||| ||.
T Consensus 3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~Dp~ 50 (133)
T 4fvg_A 3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNAT 50 (133)
T ss_dssp -----------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESCHH
T ss_pred CCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEeehH
Confidence 67899999999999999999977 89999999999999999999 443
No 2
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=98.03 E-value=2e-06 Score=62.62 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=38.0
Q ss_pred ccceeEEEEeeeEeeeeCC-cccccCCCEEEEEEEEEEEeCC
Q psy5086 74 WFQYPIIYDIRSRPRKISS-PTGSKDLQMVNISLRVLARPDA 114 (124)
Q Consensus 74 ~i~~v~~~d~r~q~~~~~~-~~~T~D~~~V~vd~~V~yrv~~ 114 (124)
|||++..+|+|+++++++. ++.|+|+++|++|++++|||.+
T Consensus 2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~d 43 (188)
T 3bk6_A 2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVD 43 (188)
T ss_dssp CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESC
T ss_pred ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECC
Confidence 6799999999999999987 8899999999999999999954
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=97.99 E-value=1.7e-06 Score=60.92 Aligned_cols=44 Identities=2% Similarity=-0.196 Sum_probs=39.4
Q ss_pred ccceeEEEEeeeEeeeeCC-cccccCCCEEEEEEEEEEEeC--CCCh
Q psy5086 74 WFQYPIIYDIRSRPRKISS-PTGSKDLQMVNISLRVLARPD--ASKL 117 (124)
Q Consensus 74 ~i~~v~~~d~r~q~~~~~~-~~~T~D~~~V~vd~~V~yrv~--~~~~ 117 (124)
|+|++..+|+|+++++++. ++.|+|+.++.+|+.++|||. |.++
T Consensus 3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~ 49 (143)
T 1win_A 3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELL 49 (143)
T ss_dssp CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCC
T ss_pred cceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHH
Confidence 5799999999999999987 789999999999999999994 5554
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=97.82 E-value=1.2e-05 Score=53.66 Aligned_cols=38 Identities=21% Similarity=0.188 Sum_probs=33.8
Q ss_pred EEEeeeEeeeeCC-cccccCCCEEEEEEEEEEEe-CCCCh
Q psy5086 80 IYDIRSRPRKISS-PTGSKDLQMVNISLRVLARP-DASKL 117 (124)
Q Consensus 80 ~~d~r~q~~~~~~-~~~T~D~~~V~vd~~V~yrv-~~~~~ 117 (124)
.+|+|.++++++. ++.|+|++++.++++++||| ||.++
T Consensus 4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~dp~~~ 43 (113)
T 2rpb_A 4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKA 43 (113)
T ss_dssp CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEESCTTTC
T ss_pred EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEECCHHHH
Confidence 4799999999987 89999999999999999999 56554
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=18.82 E-value=1.8e+02 Score=21.31 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=26.8
Q ss_pred ecC-ccceeEEE-----EeeeEeeeeCCcccccCCCEEEEEEEEE
Q psy5086 71 RLP-WFQYPIIY-----DIRSRPRKISSPTGSKDLQMVNISLRVL 109 (124)
Q Consensus 71 kiP-~i~~v~~~-----d~r~q~~~~~~~~~T~D~~~V~vd~~V~ 109 (124)
++| |+|++-.- +++...++......++|-.+|...+.+.
T Consensus 237 R~Psw~DrIl~~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~~~ 281 (282)
T 2imq_X 237 ATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVT 281 (282)
T ss_dssp SCCBCCEEEEEECSSSCCEEEEEEEECTTCCSSSSCCEEEEEEEE
T ss_pred CCccccceEEEecCCCCceEeeEecCCCCCCCCCcCCeEEEEEEE
Confidence 456 67887644 3555555544466789999999888764
No 6
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=18.35 E-value=47 Score=17.78 Aligned_cols=19 Identities=21% Similarity=-0.064 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHhhhcce
Q psy5086 23 GLKLAALAGAAAYGVSQSM 41 (124)
Q Consensus 23 ~~~~~~~~~~~~~~l~ss~ 41 (124)
.+-+++++++++.++++++
T Consensus 16 SLy~GLLlifvlavlFssy 34 (37)
T 3arc_L 16 SLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhh
Confidence 4556556665555666654
No 7
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=15.97 E-value=88 Score=15.34 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=10.2
Q ss_pred hhHHHHhhhhcCC
Q psy5086 3 QSKLNDFAGRFGK 15 (124)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (124)
...|+||++++++
T Consensus 15 ekelrdfiekfkg 27 (28)
T 1fme_A 15 EKELRDFIEKFKG 27 (28)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcC
Confidence 3568999999875
No 8
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=12.29 E-value=4.1e+02 Score=20.53 Aligned_cols=45 Identities=20% Similarity=0.184 Sum_probs=30.7
Q ss_pred ecC-ccceeEEEE-----eeeEeeeeCCcccccCCCEEEEEEEEEEEeCCC
Q psy5086 71 RLP-WFQYPIIYD-----IRSRPRKISSPTGSKDLQMVNISLRVLARPDAS 115 (124)
Q Consensus 71 kiP-~i~~v~~~d-----~r~q~~~~~~~~~T~D~~~V~vd~~V~yrv~~~ 115 (124)
+.| |-|++-.-. ++...++.-.+..++|-.+|...+.+..++..+
T Consensus 277 R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~v~~~~~ 327 (357)
T 2xsw_A 277 RTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLFRVKVRPGRD 327 (357)
T ss_dssp CCCBCCEEEEEEESSTTSEEEEEEEECTTCCSSSSCCEEEEEEEECCCCCS
T ss_pred CCCcccceEEEecCCCCceEEEEeEecccccCCCcCCceeEEEEEEecCCc
Confidence 566 677765432 444555544467789999999999998776443
No 9
>1zoy_C Large cytochrome binding protein, FAD-binding protein; succinate, ubiquinone oxidoreductase, mitochondrial respiratory complex II; HET: FAD HEM EPH UQ1; 2.40A {Sus scrofa} PDB: 1zp0_C* 3abv_C* 3ae1_C* 3ae2_C* 3ae3_C* 3ae4_C* 3ae5_C* 3ae6_C* 3ae7_C* 3ae8_C* 3ae9_C* 3aea_C* 3aeb_C* 3aec_C* 3aed_C* 3aee_C* 3aef_C* 3aeg_C* 3sfd_C* 3sfe_C*
Probab=9.42 E-value=2.8e+02 Score=18.46 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=9.9
Q ss_pred hhhHHHHhhhhcCC
Q psy5086 2 AQSKLNDFAGRFGK 15 (124)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (124)
||.+.+++.+|..+
T Consensus 5 ~~~~~~~~~~~~~~ 18 (140)
T 1zoy_C 5 AKEEMERFWNKNLG 18 (140)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred hhhhHHHHHHhhhh
Confidence 67888888766544
No 10
>2h88_C Succinate dehydrogenase cytochrome B, large subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 2h89_C* 1yq3_C* 1yq4_C* 2fbw_C* 2wqy_C*
Probab=9.27 E-value=2.9e+02 Score=18.41 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=9.8
Q ss_pred hhhHHHHhhhhcCC
Q psy5086 2 AQSKLNDFAGRFGK 15 (124)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (124)
||.+.+++.+|..+
T Consensus 5 ~~~~~~~~~~~~~~ 18 (140)
T 2h88_C 5 AKEEMARFWEKNTK 18 (140)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHhhhh
Confidence 67888888665544
Done!