RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5086
         (124 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 34.6 bits (79), Expect = 0.005
 Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 31/95 (32%)

Query: 36  GVSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKIS---S 92
           GV   M ++    +  +   +    N+    G            +         IS    
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKT-NSHLPAGKQ----------VE--------ISLVNG 373

Query: 93  P-----TGS-KDLQMVNISLRVLARP---DASKLP 118
                 +G  + L  +N++LR    P   D S++P
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408



 Score = 27.7 bits (61), Expect = 1.1
 Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 37/119 (31%)

Query: 22  VGLKLAALAGAAAYGVSQSMFTVEGGHRAIMFS----RIG-------------GVQNNVF 64
            GL L      A  G+ QS   +    R + FS     +               +  ++ 
Sbjct: 387 YGLNLTLRKAKAPSGLDQS--RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV 444

Query: 65  AEGLHFRLPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLARPDASKLPKMLCR 123
              + F     Q P +YD            GS DL++++ S+       + ++   + R
Sbjct: 445 KNNVSFNAKDIQIP-VYDTF---------DGS-DLRVLSGSI-------SERIVDCIIR 485


>3tt2_A GCN5-related N-acetyltransferase; structural genomics, PSI-biology,
           midwest center for structu genomics, MCSG, alpha-beta
           sandwich; HET: MES; 2.73A {Sphaerobacter thermophilus}
          Length = 330

 Score = 26.3 bits (57), Expect = 2.8
 Identities = 6/33 (18%), Positives = 12/33 (36%)

Query: 18  KGVGVGLKLAALAGAAAYGVSQSMFTVEGGHRA 50
           +G+ + L           GV +   +V+   R 
Sbjct: 261 RGIALALLQEVFGVYYRRGVREVELSVDAESRT 293


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 24.9 bits (53), Expect = 7.0
 Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 3/22 (13%)

Query: 24 LKLAALAGAAAYGVSQSMFTVE 45
          LKL A   A A  +     T+E
Sbjct: 29 LKLYADDSAPALAIKA---TME 47


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,868,065
Number of extensions: 106440
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 5
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.0 bits)