RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5086
         (124 letters)



>d1p5ta_ b.55.1.2 (A:) Docking protein 1, Dok1 {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 107

 Score = 25.2 bits (55), Expect = 1.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 35 YGVSQSMFTVEGGHRA 50
          YG  + MF+ E G R 
Sbjct: 59 YGRDKVMFSFEAGRRC 74


>d1u5ua_ e.5.1.2 (A:) Allene oxide synthase-lipoxygenase protein,
           N-terminal domain {Black sea rod (Plexaura homomalla)
           [TaxId: 47982]}
          Length = 366

 Score = 25.3 bits (55), Expect = 2.5
 Identities = 6/44 (13%), Positives = 13/44 (29%), Gaps = 4/44 (9%)

Query: 82  DIRSRPR----KISSPTGSKDLQMVNISLRVLARPDASKLPKML 121
           D  +  R    K +       L +V  +       ++  L   +
Sbjct: 109 DAGADARSFSIKFADSDSDGPLDIVMNTGEANIFWNSPSLEDFV 152


>d1qqga2 b.55.1.2 (A:159-262) Insulin receptor substrate 1, IRS-1
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 104

 Score = 24.0 bits (52), Expect = 4.1
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 29 LAGAAAYGVSQSMFTVEGGHRA 50
          L      G S++ F +E G  A
Sbjct: 50 LMNIRRCGHSENFFFIEVGRSA 71


>d1j0wa_ b.55.1.2 (A:) Downstream of tyrosine kinase 5, Dok-5
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 99

 Score = 23.6 bits (51), Expect = 5.0
 Identities = 6/16 (37%), Positives = 7/16 (43%)

Query: 35 YGVSQSMFTVEGGHRA 50
          YG   + FT E G   
Sbjct: 53 YGRDTTWFTFEAGRMC 68


>d1xr0b_ b.55.1.2 (B:) FGFR substrate 2 (SNT-1) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 129

 Score = 24.1 bits (52), Expect = 5.1
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 35 YGVSQSMFTVEGGHRA 50
          YG   ++F+ E G R 
Sbjct: 58 YGYDSNLFSFESGRRC 73


>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase
           {Thermus thermophilus [TaxId: 274]}
          Length = 310

 Score = 23.7 bits (50), Expect = 9.5
 Identities = 10/46 (21%), Positives = 14/46 (30%)

Query: 8   DFAGRFGKGPKGVGVGLKLAALAGAAAYGVSQSMFTVEGGHRAIMF 53
           D A     G   + V   L   A   A  V+  +       R  +F
Sbjct: 248 DGAKALALGADLLAVARPLLRPALEGAERVAAWIGDYLEELRTALF 293


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 435,567
Number of extensions: 18305
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 10
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.2 bits)