Query psy5087
Match_columns 388
No_of_seqs 304 out of 1856
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 16:58:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11029 FtsH protease regulat 100.0 6.6E-43 1.4E-47 335.2 25.5 245 34-292 13-327 (334)
2 KOG3090|consensus 100.0 7.3E-42 1.6E-46 297.6 23.5 250 15-264 12-261 (290)
3 TIGR01932 hflC HflC protein. H 100.0 8.9E-42 1.9E-46 328.4 25.3 241 34-288 13-312 (317)
4 PRK10930 FtsH protease regulat 100.0 3.9E-39 8.5E-44 317.1 30.0 233 28-267 84-341 (419)
5 cd03401 Band_7_prohibitin Band 100.0 1.1E-38 2.3E-43 287.8 23.5 195 40-235 1-196 (196)
6 cd03405 Band_7_HflC Band_7_Hfl 100.0 1.2E-38 2.6E-43 296.8 22.5 208 41-251 1-231 (242)
7 TIGR01933 hflK HflK protein. H 100.0 5.3E-37 1.1E-41 288.8 23.5 231 41-288 1-254 (261)
8 cd03404 Band_7_HflK Band_7_Hfl 100.0 9E-36 2E-40 281.2 25.0 224 30-259 4-264 (266)
9 KOG3083|consensus 100.0 1.5E-34 3.2E-39 251.9 16.6 233 32-264 18-251 (271)
10 cd03407 Band_7_4 A subgroup of 100.0 8.4E-34 1.8E-38 266.8 22.9 194 46-243 1-203 (262)
11 cd03406 Band_7_3 A subgroup of 100.0 5E-33 1.1E-37 260.8 23.0 202 37-240 1-212 (280)
12 cd03403 Band_7_stomatin_like B 100.0 3.8E-32 8.2E-37 248.6 21.6 203 44-266 1-208 (215)
13 COG0330 HflC Membrane protease 100.0 4E-30 8.6E-35 245.9 24.9 205 29-242 9-221 (291)
14 cd03402 Band_7_2 A subgroup of 100.0 1.4E-29 3.1E-34 231.0 21.0 162 40-207 1-170 (219)
15 KOG2621|consensus 99.9 1.6E-27 3.6E-32 215.6 14.4 217 24-259 38-259 (288)
16 PF01145 Band_7: SPFH domain / 99.9 1.1E-27 2.4E-32 212.1 10.1 163 42-208 1-168 (179)
17 smart00244 PHB prohibitin homo 99.9 3.9E-26 8.4E-31 198.7 17.3 157 39-200 1-159 (160)
18 KOG2620|consensus 99.9 5.1E-26 1.1E-30 203.4 4.2 186 43-235 11-198 (301)
19 KOG2962|consensus 99.9 3E-20 6.6E-25 163.3 21.2 176 23-199 5-185 (322)
20 cd03408 Band_7_5 A subgroup of 99.8 1E-19 2.3E-24 165.3 15.7 160 37-200 12-206 (207)
21 cd03400 Band_7_1 A subgroup of 99.8 7.5E-19 1.6E-23 146.7 13.5 120 81-200 3-123 (124)
22 COG2268 Uncharacterized protei 99.7 2.3E-16 4.9E-21 157.4 22.6 208 29-240 22-251 (548)
23 cd03399 Band_7_flotillin Band_ 99.6 1.4E-15 3E-20 127.7 9.6 116 81-198 2-125 (128)
24 KOG2668|consensus 99.5 1E-12 2.3E-17 122.5 16.4 160 41-204 2-171 (428)
25 cd02106 Band_7 The band 7 doma 99.4 1.6E-12 3.5E-17 106.8 12.7 106 93-200 15-120 (121)
26 PF13421 Band_7_1: SPFH domain 99.4 1.5E-11 3.2E-16 111.6 17.7 161 38-200 13-206 (211)
27 COG4260 Membrane protease subu 98.7 4.3E-07 9.3E-12 83.3 15.0 162 38-200 38-233 (345)
28 KOG3597|consensus 98.6 9E-08 2E-12 94.7 8.6 122 258-380 106-233 (442)
29 PTZ00491 major vault protein; 97.9 0.00096 2.1E-08 70.7 19.0 150 41-192 464-643 (850)
30 PF12127 YdfA_immunity: SigmaW 97.2 0.0051 1.1E-07 56.8 11.2 158 95-261 135-308 (316)
31 PRK13665 hypothetical protein; 97.0 0.0098 2.1E-07 54.7 11.7 154 95-257 140-309 (316)
32 KOG3597|consensus 96.9 0.0018 3.9E-08 64.6 5.9 98 257-357 332-432 (442)
33 COG1580 FliL Flagellar basal b 95.2 0.56 1.2E-05 40.6 12.6 78 101-188 78-157 (159)
34 cd03407 Band_7_4 A subgroup of 89.4 0.91 2E-05 42.7 6.3 54 211-264 182-241 (262)
35 PRK12785 fliL flagellar basal 88.3 16 0.00036 31.8 13.4 52 134-187 110-163 (166)
36 COG4864 Uncharacterized protei 87.9 5.4 0.00012 36.1 9.6 160 96-264 140-315 (328)
37 cd03405 Band_7_HflC Band_7_Hfl 87.8 1.4 3.1E-05 40.6 6.4 64 180-243 136-201 (242)
38 PRK11029 FtsH protease regulat 87.7 1.6 3.4E-05 42.6 6.8 63 181-243 202-266 (334)
39 cd03404 Band_7_HflK Band_7_Hfl 86.9 2 4.4E-05 40.3 6.9 64 181-244 161-226 (266)
40 TIGR01932 hflC HflC protein. H 86.3 2 4.4E-05 41.6 6.7 33 211-243 224-256 (317)
41 PRK06654 fliL flagellar basal 84.5 19 0.00041 31.8 11.2 51 134-187 126-176 (181)
42 PF11978 MVP_shoulder: Shoulde 83.3 5.8 0.00012 32.3 6.8 94 95-189 12-116 (118)
43 PF03748 FliL: Flagellar basal 81.3 7.2 0.00016 30.4 6.9 52 134-187 43-96 (99)
44 PRK05696 fliL flagellar basal 80.8 37 0.00081 29.6 12.5 54 134-187 110-167 (170)
45 TIGR01933 hflK HflK protein. H 80.1 5.5 0.00012 37.2 6.8 63 181-243 134-198 (261)
46 PRK07021 fliL flagellar basal 76.3 50 0.0011 28.5 14.3 54 134-187 102-159 (162)
47 PRK10930 FtsH protease regulat 73.2 7.3 0.00016 39.2 5.8 80 163-243 211-294 (419)
48 PRK07718 fliL flagellar basal 72.7 13 0.00028 31.5 6.5 52 134-187 86-139 (142)
49 cd03406 Band_7_3 A subgroup of 72.4 5.5 0.00012 37.9 4.5 16 242-257 256-271 (280)
50 PRK05697 flagellar basal body- 71.3 12 0.00027 31.5 5.9 54 134-187 77-134 (137)
51 KOG2962|consensus 70.1 15 0.00032 33.6 6.3 12 245-256 277-288 (322)
52 PRK01558 V-type ATP synthase s 69.9 24 0.00051 31.7 7.8 17 365-381 174-190 (198)
53 COG2268 Uncharacterized protei 67.6 14 0.00031 38.2 6.5 35 212-246 417-451 (548)
54 PRK06568 F0F1 ATP synthase sub 64.7 36 0.00077 29.3 7.5 9 150-158 29-37 (154)
55 PTZ00399 cysteinyl-tRNA-synthe 62.6 71 0.0015 34.2 10.9 38 165-203 520-563 (651)
56 PRK08455 fliL flagellar basal 61.8 25 0.00054 31.2 6.2 52 134-187 126-179 (182)
57 COG0330 HflC Membrane protease 59.1 27 0.00059 33.0 6.5 97 160-258 146-261 (291)
58 PRK14475 F0F1 ATP synthase sub 56.4 55 0.0012 28.4 7.4 17 150-166 35-52 (167)
59 PRK01005 V-type ATP synthase s 55.3 59 0.0013 29.4 7.6 31 351-381 169-199 (207)
60 PRK14471 F0F1 ATP synthase sub 54.2 64 0.0014 27.8 7.5 18 149-166 32-50 (164)
61 PLN03086 PRLI-interacting fact 54.0 78 0.0017 33.2 9.1 31 221-251 49-79 (567)
62 PRK06231 F0F1 ATP synthase sub 52.7 65 0.0014 29.1 7.5 16 149-164 72-88 (205)
63 cd03403 Band_7_stomatin_like B 51.6 20 0.00043 32.2 4.0 69 159-235 116-185 (215)
64 CHL00118 atpG ATP synthase CF0 51.4 76 0.0016 27.1 7.4 20 222-241 104-123 (156)
65 PRK14472 F0F1 ATP synthase sub 48.4 87 0.0019 27.3 7.5 16 149-164 42-58 (175)
66 KOG2668|consensus 46.1 40 0.00087 32.8 5.1 12 64-75 54-65 (428)
67 PRK09173 F0F1 ATP synthase sub 45.5 1.2E+02 0.0026 25.9 7.8 9 150-158 27-35 (159)
68 PRK13453 F0F1 ATP synthase sub 45.4 1E+02 0.0022 26.8 7.4 17 149-165 42-59 (173)
69 TIGR01147 V_ATP_synt_G vacuola 45.3 60 0.0013 26.4 5.4 31 214-244 33-65 (113)
70 PRK01558 V-type ATP synthase s 44.2 55 0.0012 29.3 5.6 24 217-240 29-52 (198)
71 PRK14473 F0F1 ATP synthase sub 43.5 1.2E+02 0.0026 26.1 7.5 18 149-166 32-50 (164)
72 PRK08475 F0F1 ATP synthase sub 43.4 1.2E+02 0.0026 26.3 7.5 16 149-164 46-62 (167)
73 TIGR01144 ATP_synt_b ATP synth 43.2 1.2E+02 0.0027 25.3 7.4 9 150-158 20-28 (147)
74 PRK13461 F0F1 ATP synthase sub 42.1 1.3E+02 0.0028 25.7 7.5 17 149-165 29-46 (159)
75 PRK02292 V-type ATP synthase s 39.4 1E+02 0.0023 27.1 6.6 25 213-237 30-54 (188)
76 cd03401 Band_7_prohibitin Band 39.2 1.5E+02 0.0032 26.0 7.6 22 221-242 171-192 (196)
77 TIGR03321 alt_F1F0_F0_B altern 38.5 1.3E+02 0.0029 27.7 7.5 19 149-167 29-48 (246)
78 PRK07353 F0F1 ATP synthase sub 38.3 1.7E+02 0.0036 24.2 7.4 10 149-158 29-38 (140)
79 PRK09174 F0F1 ATP synthase sub 38.1 1.5E+02 0.0033 26.7 7.5 19 149-167 77-96 (204)
80 PRK14474 F0F1 ATP synthase sub 37.8 1.4E+02 0.0031 27.8 7.5 19 149-167 29-48 (250)
81 PF12911 OppC_N: N-terminal TM 37.6 27 0.0006 24.0 2.1 28 5-32 4-31 (56)
82 PRK13428 F0F1 ATP synthase sub 37.2 1.2E+02 0.0027 30.8 7.5 16 150-165 26-42 (445)
83 PRK13455 F0F1 ATP synthase sub 37.0 1.6E+02 0.0035 25.8 7.4 17 150-166 52-69 (184)
84 PF05366 Sarcolipin: Sarcolipi 36.8 75 0.0016 18.9 3.4 28 14-41 2-29 (31)
85 PRK13460 F0F1 ATP synthase sub 36.1 1.6E+02 0.0034 25.6 7.1 16 149-164 40-56 (173)
86 PRK06569 F0F1 ATP synthase sub 35.8 2.3E+02 0.0049 24.5 7.7 7 152-158 37-43 (155)
87 COG0711 AtpF F0F1-type ATP syn 34.2 2.3E+02 0.0051 24.3 7.8 16 149-164 30-46 (161)
88 PRK13454 F0F1 ATP synthase sub 34.0 1.9E+02 0.0042 25.4 7.4 11 149-159 55-65 (181)
89 PRK07352 F0F1 ATP synthase sub 33.1 1.9E+02 0.0041 25.1 7.2 17 148-164 42-59 (174)
90 PRK05759 F0F1 ATP synthase sub 32.9 2E+02 0.0043 24.3 7.2 10 149-158 28-37 (156)
91 TIGR02499 HrpE_YscL_not type I 32.7 1.1E+02 0.0023 26.1 5.5 9 296-304 141-149 (166)
92 CHL00019 atpF ATP synthase CF0 31.1 2.1E+02 0.0045 25.1 7.2 19 148-166 47-66 (184)
93 PRK02292 V-type ATP synthase s 30.9 2.6E+02 0.0057 24.4 7.8 24 217-240 23-46 (188)
94 PRK09098 type III secretion sy 30.5 2.7E+02 0.0058 25.7 7.9 29 214-242 54-82 (233)
95 PRK06669 fliH flagellar assemb 30.4 1.8E+02 0.0039 27.4 7.1 11 296-306 208-218 (281)
96 PRK08476 F0F1 ATP synthase sub 30.1 2.8E+02 0.006 23.2 7.4 25 217-241 84-108 (141)
97 COG4218 MtrF Tetrahydromethano 29.0 51 0.0011 24.2 2.2 25 10-34 44-68 (73)
98 PF00430 ATP-synt_B: ATP synth 26.9 2.8E+02 0.0062 22.3 6.9 18 224-241 83-100 (132)
99 KOG2620|consensus 26.9 1.1E+02 0.0024 28.7 4.6 123 108-242 88-227 (301)
100 PHA00448 hypothetical protein 26.8 2.6E+02 0.0055 20.4 6.5 26 216-241 37-62 (70)
101 PRK15322 invasion protein OrgB 25.7 2E+02 0.0043 26.0 5.8 31 342-374 140-170 (210)
102 PF07423 DUF1510: Protein of u 25.6 49 0.0011 30.2 2.1 13 20-32 18-30 (217)
103 PF06596 PsbX: Photosystem II 25.5 91 0.002 20.2 2.7 8 6-13 5-12 (39)
104 PRK04057 30S ribosomal protein 25.5 3.5E+02 0.0075 24.4 7.5 80 94-184 102-183 (203)
105 PF09472 MtrF: Tetrahydrometha 25.4 57 0.0012 23.7 2.0 25 13-37 38-62 (64)
106 PRK09098 type III secretion sy 25.0 1.6E+02 0.0035 27.1 5.4 9 296-304 182-190 (233)
107 CHL00118 atpG ATP synthase CF0 24.4 4.4E+02 0.0095 22.3 7.9 9 150-158 47-55 (156)
108 KOG3090|consensus 24.2 1.8E+02 0.0039 26.7 5.3 36 212-247 220-266 (290)
109 KOG0742|consensus 24.1 7.8E+02 0.017 25.1 10.1 22 212-233 207-228 (630)
110 PRK12613 galactose-6-phosphate 24.1 60 0.0013 27.5 2.2 35 162-197 12-46 (141)
111 PF06188 HrpE: HrpE/YscL/FliH 24.0 1.9E+02 0.0041 25.8 5.5 18 209-226 42-59 (191)
112 KOG3357|consensus 22.9 84 0.0018 26.0 2.7 61 254-317 29-101 (167)
113 COG1766 fliF Flagellar basal b 22.8 69 0.0015 33.5 2.8 44 3-50 9-52 (545)
114 PF04478 Mid2: Mid2 like cell 21.7 37 0.00079 29.1 0.5 19 54-73 84-102 (154)
115 PF11740 KfrA_N: Plasmid repli 21.1 4.3E+02 0.0093 21.0 11.3 17 183-199 53-69 (120)
116 KOG2007|consensus 21.1 5.8E+02 0.013 26.5 8.7 18 138-155 477-494 (586)
117 PF13150 DUF3989: Protein of u 20.4 53 0.0011 25.3 1.1 44 2-45 11-54 (85)
118 KOG4753|consensus 20.2 2.5E+02 0.0054 23.0 4.8 20 34-53 68-87 (124)
No 1
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=100.00 E-value=6.6e-43 Score=335.20 Aligned_cols=245 Identities=24% Similarity=0.379 Sum_probs=211.6
Q ss_pred HHHhhcceEEecCCeEEEEEeecCceeee------EecCceeEEccccceeEEEEeeeeeeeecc-ccccCCccEEEEEE
Q psy5087 34 AYGVSQSMFTVEGGHRAIMFSRIGGVQNN------VFAEGLHFRLPWFQYPIIYDIRSRPRKISS-PTGSKDLQMVNISL 106 (388)
Q Consensus 34 ~~~l~~s~~~V~~ge~gVv~~~fG~~~~~------~~~pGl~f~~P~~~~v~~~d~r~~~~~~~~-~~~tkD~~~v~v~v 106 (388)
++++++|+++|++||+|||+ +||++.+. +++||+||++||++++..+|+|.+.++.+. .+.|+|+..|++++
T Consensus 13 ~~~l~~s~~iV~ege~gVV~-rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~~V~VD~ 91 (334)
T PRK11029 13 LVVLYMSVFVVKEGERGIVL-RFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDS 91 (334)
T ss_pred HHHHHheEEEECCCeEEEEE-ECCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCCEEEEEE
Confidence 44567899999999999998 99999754 489999999999999999999999998874 36899999999999
Q ss_pred EEEEeeCCCCHHHHHHHhCC-cc--cccccchHHHHHHHHHhhcCCHHHHHH-hHHHHHHHHHHHHHHH-----------
Q psy5087 107 RVLARPDASKLPKVYQHLGL-DF--DEKVLPSICNEVLKSVVAKFNASQLIT-QRQQVSLLVKSQLIER----------- 171 (388)
Q Consensus 107 ~v~~r~~~~d~~~~~~~~g~-~~--~~~~l~~~~~~~lR~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~----------- 171 (388)
.++|| +.||.++|.+++. +. ....|.+.+++++|+++|+++++++++ +|++|..++++.+++.
T Consensus 92 ~V~yr--I~Dp~~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~ 169 (334)
T PRK11029 92 YIKWR--ISDFSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATP 169 (334)
T ss_pred EEEEE--ECCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhccccccccc
Confidence 99999 5799999887753 32 346788999999999999999999996 7999999999999964
Q ss_pred ----------------------------HhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHH----H--------
Q psy5087 172 ----------------------------AKDFNIILDDVSITDLSFGKDYTAAVEAKQVAQQEAQRA----V-------- 211 (388)
Q Consensus 172 ----------------------------l~~~Gi~I~~v~I~~i~~p~~v~~aie~~~~Aeqe~~~~----~-------- 211 (388)
+.+|||+|.+|+|++++||+++.++|++++.|+++++.+ +
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~ 249 (334)
T PRK11029 170 AADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKL 249 (334)
T ss_pred ccccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999875521 1
Q ss_pred -------HHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhcCCCcceeehhHHHHHHHhhhccceeeccccCCCcceEEEee
Q psy5087 212 -------FVVERAKQEKQQKILQAEGEAEAAKKLGLAVGQNPGYLKLRKIRAAQNIAHTRLHYVQAGGQNQTQDYFLLDV 284 (388)
Q Consensus 212 -------~~~~~Aea~aea~~i~AegeAea~~~~aea~~~~p~~~~~r~i~~~~~i~~~~~~y~~~~~~~~~~d~f~~~~ 284 (388)
....+|+|++++++++|+|||+|+++++++|+++|+++++ .+++++|..++. ++++.+++++
T Consensus 250 ~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~~~p~~~~~---------~~~lea~~~~~~--~~~~~~vl~~ 318 (334)
T PRK11029 250 RATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQDPDFYAF---------IRSLRAYENSFS--GNQDVMVLSP 318 (334)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCHHHHHH---------HHHHHHHHHHhc--CCCcEEEECC
Confidence 3344588999999999999999999999999999999998 788888888773 3357899999
Q ss_pred cCCc-eEEe
Q psy5087 285 TNGI-LWIR 292 (388)
Q Consensus 285 ~s~~-~~l~ 292 (388)
++++ .+++
T Consensus 319 ~~~~~~~l~ 327 (334)
T PRK11029 319 DSDFFRYMK 327 (334)
T ss_pred ChHHHHHhh
Confidence 9876 4454
No 2
>KOG3090|consensus
Probab=100.00 E-value=7.3e-42 Score=297.58 Aligned_cols=250 Identities=64% Similarity=1.051 Sum_probs=243.1
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhhcceEEecCCeEEEEEeecCceeeeEecCceeEEccccceeEEEEeeeeeeeecccc
Q psy5087 15 KGPKGVGVGLKLAALAGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISSPT 94 (388)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~V~~ge~gVv~~~fG~~~~~~~~pGl~f~~P~~~~v~~~d~r~~~~~~~~~~ 94 (388)
.|++++..++.++++.++.++.+..|+|.|+-||.+++++|+|++...++..|+||.+||+++.+.||+|.++..+.+.+
T Consensus 12 pg~~~~~~~l~~~~~~G~~~y~v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pIiYDvRarP~~i~S~t 91 (290)
T KOG3090|consen 12 PGPRGAGAGLKLLLIGGLGAYGVTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPIIYDVRARPRLISSPT 91 (290)
T ss_pred CCcchHHHHHHHHHHhchhhheecceeEeecCCceEEEEeccccchhccccCCceEeeeccccceeeeeccCcccccCCC
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccEEEEEEEEEEeeCCCCHHHHHHHhCCcccccccchHHHHHHHHHhhcCCHHHHHHhHHHHHHHHHHHHHHHHhc
Q psy5087 95 GSKDLQMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKD 174 (388)
Q Consensus 95 ~tkD~~~v~v~v~v~~r~~~~d~~~~~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~ 174 (388)
.++|.+.|++...|.-|.+...++.+|+++|.||.++.+-+++.+.|+.++++|...+++++|+++...|++.|.++..+
T Consensus 92 GskDLQmVnI~lRVLsRP~~~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~ 171 (290)
T KOG3090|consen 92 GSKDLQMVNIGLRVLSRPMADQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAAD 171 (290)
T ss_pred CCcceeEEEeeeEEecCCChhhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhcCCCcceeehhH
Q psy5087 175 FNIILDDVSITDLSFGKDYTAAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLGLAVGQNPGYLKLRKI 254 (388)
Q Consensus 175 ~Gi~I~~v~I~~i~~p~~v~~aie~~~~Aeqe~~~~~~~~~~Aea~aea~~i~AegeAea~~~~aea~~~~p~~~~~r~i 254 (388)
+.|.++||.|+.+.+.+++..++|.|+.|.||++|++..++.|+++++..+++|||||++++++.+|++++|.|+.+|+|
T Consensus 172 Fni~LDDVSiT~l~F~~efTaAiEaKQvA~QeAqRA~F~VekA~qek~~~ivrAqGEaksAqliGeAi~nn~~fi~Lrki 251 (290)
T KOG3090|consen 172 FNIALDDVSITELTFGKEFTAAIEAKQVAAQEAQRAKFIVEKAEQEKQSAIVRAQGEAKSAQLIGEAIKNNPAFITLRKI 251 (290)
T ss_pred cceEeecceeeeeecCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhccchHHHHHHHHHHhCCccceeehhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q psy5087 255 RAAQNIAHTR 264 (388)
Q Consensus 255 ~~~~~i~~~~ 264 (388)
++.++|++..
T Consensus 252 ~aAr~IA~ti 261 (290)
T KOG3090|consen 252 EAAREIAQTI 261 (290)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 3
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=100.00 E-value=8.9e-42 Score=328.42 Aligned_cols=241 Identities=19% Similarity=0.308 Sum_probs=205.6
Q ss_pred HHHhhcceEEecCCeEEEEEeecCceeeeE------ecCceeEEccccceeEEEEeeeeeeeecc-ccccCCccEEEEEE
Q psy5087 34 AYGVSQSMFTVEGGHRAIMFSRIGGVQNNV------FAEGLHFRLPWFQYPIIYDIRSRPRKISS-PTGSKDLQMVNISL 106 (388)
Q Consensus 34 ~~~l~~s~~~V~~ge~gVv~~~fG~~~~~~------~~pGl~f~~P~~~~v~~~d~r~~~~~~~~-~~~tkD~~~v~v~v 106 (388)
++++++|+++|++||+||++ +||++.+.. ++||+||++||++++..+|+|.+.++.+. .+.|+|++++.+++
T Consensus 13 ~~~l~~~~~iV~~ge~gVv~-~fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~~~V~Vd~ 91 (317)
T TIGR01932 13 IVVLFQPFFIIKEGERGIIT-RFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEKKDIIIDT 91 (317)
T ss_pred HHHHHheEEEECCCeEEEEE-ecCceeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCCCCEEEEEE
Confidence 44567899999999999997 999987543 48999999999999999999999998764 47899999999999
Q ss_pred EEEEeeCCCCHHHHHHHhCC---cccccccchHHHHHHHHHhhcCCHHHHHHh-HHHH----------------------
Q psy5087 107 RVLARPDASKLPKVYQHLGL---DFDEKVLPSICNEVLKSVVAKFNASQLITQ-RQQV---------------------- 160 (388)
Q Consensus 107 ~v~~r~~~~d~~~~~~~~g~---~~~~~~l~~~~~~~lR~~~~~~~~~ei~~~-R~~i---------------------- 160 (388)
.+.|| +.|+.++|.++|. ++.+..|.+.+++++|+++|++++++++++ |++|
T Consensus 92 ~V~yr--V~d~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~ 169 (317)
T TIGR01932 92 YIRWR--IEDFKKYYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTI 169 (317)
T ss_pred EEEEE--ECCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhcccccccccccccc
Confidence 99999 4699999999873 245678999999999999999999999964 5555
Q ss_pred -------HHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHH-------------------HHHH
Q psy5087 161 -------SLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAKQVAQQEAQRA-------------------VFVV 214 (388)
Q Consensus 161 -------~~~i~~~l~~~l~~~Gi~I~~v~I~~i~~p~~v~~aie~~~~Aeqe~~~~-------------------~~~~ 214 (388)
++++.+.+.+.+.+|||+|.+|.|++++||+++.+++++++.|+++++.. +...
T Consensus 170 ~~~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~ 249 (317)
T TIGR01932 170 TKGREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRK 249 (317)
T ss_pred chhhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888889999999999999999999999999999988888653211 1345
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhHhcCCCcceeehhHHHHHHHhhhccceeeccccCCCcceEEEeecCCc
Q psy5087 215 ERAKQEKQQKILQAEGEAEAAKKLGLAVGQNPGYLKLRKIRAAQNIAHTRLHYVQAGGQNQTQDYFLLDVTNGI 288 (388)
Q Consensus 215 ~~Aea~aea~~i~AegeAea~~~~aea~~~~p~~~~~r~i~~~~~i~~~~~~y~~~~~~~~~~d~f~~~~~s~~ 288 (388)
..|+|++++.+++|+|||+|+++++++|+++|+++++ .+.+++|..+++ +.++.+++++++++
T Consensus 250 ~~aeA~a~a~~~~Aegea~a~~~~~~a~~~~p~~~~~---------~~~le~~~~~~~--~~~~~~vl~~~~~~ 312 (317)
T TIGR01932 250 ILSEAYRTARIIKGEGDAEAAKIYSDAYGKDPEFYSF---------WRSLEAYEKSFK--DNQDEKVLSTDSEF 312 (317)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHccCHHHHHH---------HHHHHHHHHHhC--CCCCEEEECCCcHH
Confidence 5678889999999999999999999999999999998 566667766663 34668999999987
No 4
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=100.00 E-value=3.9e-39 Score=317.13 Aligned_cols=233 Identities=19% Similarity=0.266 Sum_probs=196.9
Q ss_pred HHHHHHHHHhhcceEEecCCeEEEEEeecCceeeeEecCceeEEccccceeEEEEeeeeeee-eccccccCCccEEEEEE
Q psy5087 28 ALAGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRK-ISSPTGSKDLQMVNISL 106 (388)
Q Consensus 28 ~~~~~~~~~l~~s~~~V~~ge~gVv~~~fG~~~~~~~~pGl~f~~P~~~~v~~~d~r~~~~~-~~~~~~tkD~~~v~v~v 106 (388)
++++++++|+++|+++|+++|+|||+ +||++. .+++||+||++||+++|+.+|++.+... ......|+|+..|++++
T Consensus 84 i~~~~v~i~l~sg~yiV~e~E~gVV~-rFGk~~-~~l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~ 161 (419)
T PRK10930 84 AAAAVVIIWAASGFYTIKEAERGVVT-RFGKFS-HLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVEM 161 (419)
T ss_pred HHHHHHHHHHHheEEEECCCeEEEEE-ECCcCc-ceeCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEEEE
Confidence 34444455677899999999999998 999996 6899999999999999999999775433 23346899999999999
Q ss_pred EEEEeeCCCCHHHHHHHhCCcccccccchHHHHHHHHHhhcCCHHHHHH-hHHHHHHHHHHHHHHHHhcC--CeEEEEEE
Q psy5087 107 RVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLIT-QRQQVSLLVKSQLIERAKDF--NIILDDVS 183 (388)
Q Consensus 107 ~v~~r~~~~d~~~~~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~I~~v~ 183 (388)
.|+|| +.||.+++.++. ..+..|.+.+++++|+++|+++++++++ +|++|++++++.+++.+++| ||+|++|+
T Consensus 162 ~VqYr--I~Dp~~~lf~v~--~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~ 237 (419)
T PRK10930 162 NVQYR--VTDPEKYLFSVT--SPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVN 237 (419)
T ss_pred EEEEE--ECCHHHHHHhcc--CHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEE
Confidence 99999 579999887763 4567799999999999999999999997 69999999999999999986 99999999
Q ss_pred eecccCCHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhhhhhHHH-HHHHHhHhc
Q psy5087 184 ITDLSFGKDYTAAVEAKQVAQQEAQRA-------------------VFVVERAKQEKQQKILQAEGEAEA-AKKLGLAVG 243 (388)
Q Consensus 184 I~~i~~p~~v~~aie~~~~Aeqe~~~~-------------------~~~~~~Aea~aea~~i~AegeAea-~~~~aea~~ 243 (388)
|++++||+++.+++++.+.|+++.++. +..++.|+|++++.+++|+|||++ .++| .+|+
T Consensus 238 I~di~pP~eV~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~-~~Y~ 316 (419)
T PRK10930 238 FQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLL-PEYK 316 (419)
T ss_pred EeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHh
Confidence 999999999999998888777553322 144566899999999999999977 5566 5999
Q ss_pred CCCcceeehh-HHHHHHHhhhccce
Q psy5087 244 QNPGYLKLRK-IRAAQNIAHTRLHY 267 (388)
Q Consensus 244 ~~p~~~~~r~-i~~~~~i~~~~~~y 267 (388)
++|++++-|. +|+++++......+
T Consensus 317 kaP~vtr~RlYletme~vl~~~~kv 341 (419)
T PRK10930 317 AAPEITRERLYIETMEKVLGHTRKV 341 (419)
T ss_pred hCHHHHHHHHHHHHHHHHHccCCEE
Confidence 9999999886 99988887655443
No 5
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=100.00 E-value=1.1e-38 Score=287.84 Aligned_cols=195 Identities=69% Similarity=1.071 Sum_probs=184.1
Q ss_pred ceEEecCCeEEEEEeecCceee-eEecCceeEEccccceeEEEEeeeeeeeeccccccCCccEEEEEEEEEEeeCCCCHH
Q psy5087 40 SMFTVEGGHRAIMFSRIGGVQN-NVFAEGLHFRLPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLARPDASKLP 118 (388)
Q Consensus 40 s~~~V~~ge~gVv~~~fG~~~~-~~~~pGl~f~~P~~~~v~~~d~r~~~~~~~~~~~tkD~~~v~v~v~v~~r~~~~d~~ 118 (388)
|+++|++|++||++ +||+.+. .+++||+||++||++++..+|++.+++++...+.|+|++.|++++.+.|++.++++.
T Consensus 1 ~~~~V~~g~~gVv~-~~g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~~ 79 (196)
T cd03401 1 SLYNVDGGHRAVLF-NRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQLP 79 (196)
T ss_pred CEEEECCCcEEEEE-EecCccccCccCCceEEEccccceeEEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHHH
Confidence 68999999999998 8887654 389999999999999999999999998887777899999999999999998888888
Q ss_pred HHHHHhCCcccccccchHHHHHHHHHhhcCCHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHH
Q psy5087 119 KVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVE 198 (388)
Q Consensus 119 ~~~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~I~~v~I~~i~~p~~v~~aie 198 (388)
.+|..+|.++.+..|.+.+++++|+++|+|+++|++++|++|++.|.+.+++.+++|||.|.+|.|++++||+++.++|+
T Consensus 80 ~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~ 159 (196)
T cd03401 80 RIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVE 159 (196)
T ss_pred HHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHHH
Confidence 99999987777778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy5087 199 AKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAA 235 (388)
Q Consensus 199 ~~~~Aeqe~~~~~~~~~~Aea~aea~~i~AegeAea~ 235 (388)
+++.|+|+++++++++.+|+++|++++++|+|+|+|+
T Consensus 160 ~k~~a~q~~~~a~~~~~~a~~ea~~~~~~A~gea~a~ 196 (196)
T cd03401 160 AKQVAQQEAERAKFVVEKAEQEKQAAVIRAEGEAEAA 196 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 9999999999999999999999999999999999874
No 6
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=1.2e-38 Score=296.82 Aligned_cols=208 Identities=25% Similarity=0.363 Sum_probs=187.1
Q ss_pred eEEecCCeEEEEEeecCceeeeEecCceeEEccccceeEEEEeeeeeeeecc-ccccCCccEEEEEEEEEEeeCCCCHHH
Q psy5087 41 MFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISS-PTGSKDLQMVNISLRVLARPDASKLPK 119 (388)
Q Consensus 41 ~~~V~~ge~gVv~~~fG~~~~~~~~pGl~f~~P~~~~v~~~d~r~~~~~~~~-~~~tkD~~~v~v~v~v~~r~~~~d~~~ 119 (388)
+|+|++||.||++ +||++.+.+++||+||++||+++++.+|++.+.++.+. .+.|+|++++++++.+.|| +.|+..
T Consensus 1 ~~iV~~ge~~Vv~-~~Gk~~~~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yr--I~d~~~ 77 (242)
T cd03405 1 LFIVDEGEQAVVL-RFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWR--ITDPLR 77 (242)
T ss_pred CEEeCCCeEEEEE-EcCccccccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEE--EcCHHH
Confidence 5899999999998 99999766899999999999999999999999887653 4789999999999999999 568999
Q ss_pred HHHHhCCcc--cccccchHHHHHHHHHhhcCCHHHHHHh-HHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHH
Q psy5087 120 VYQHLGLDF--DEKVLPSICNEVLKSVVAKFNASQLITQ-RQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAA 196 (388)
Q Consensus 120 ~~~~~g~~~--~~~~l~~~~~~~lR~~~~~~~~~ei~~~-R~~i~~~i~~~l~~~l~~~Gi~I~~v~I~~i~~p~~v~~a 196 (388)
+|.+++... .+..|.+.+++++|+++|++++++++++ |++|.+.+.+.+++.+++|||+|.+|.|++++||+++.++
T Consensus 78 ~~~~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~a 157 (242)
T cd03405 78 FYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSES 157 (242)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHHH
Confidence 999988632 2478999999999999999999999987 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhcCCCcceee
Q psy5087 197 VEAKQVAQQEAQRA-------------------VFVVERAKQEKQQKILQAEGEAEAAKKLGLAVGQNPGYLKL 251 (388)
Q Consensus 197 ie~~~~Aeqe~~~~-------------------~~~~~~Aea~aea~~i~AegeAea~~~~aea~~~~p~~~~~ 251 (388)
|++++.|++++..+ +..+..|+++|++.+++|+|+|+|+++++++|+++|+++.|
T Consensus 158 i~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~~p~~~~~ 231 (242)
T cd03405 158 VYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDPEFYAF 231 (242)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 98888877653222 24567899999999999999999999999999999999987
No 7
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=100.00 E-value=5.3e-37 Score=288.82 Aligned_cols=231 Identities=18% Similarity=0.257 Sum_probs=194.7
Q ss_pred eEEecCCeEEEEEeecCceeeeEecCceeEEccccceeEEEEeeeee-eeeccccccCCccEEEEEEEEEEeeCCCCHHH
Q psy5087 41 MFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRP-RKISSPTGSKDLQMVNISLRVLARPDASKLPK 119 (388)
Q Consensus 41 ~~~V~~ge~gVv~~~fG~~~~~~~~pGl~f~~P~~~~v~~~d~r~~~-~~~~~~~~tkD~~~v~v~v~v~~r~~~~d~~~ 119 (388)
+|+|+|||.||++ +||++. .+++||+||++||+++++.+|++.+. +.-...+.|+|+..|.+++.+.|| ++||.+
T Consensus 1 ~~iV~~ge~~Vv~-~fGk~~-~~l~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yr--I~d~~~ 76 (261)
T TIGR01933 1 IYTIGEAERGVVL-RFGKYH-RTVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYR--ITDPYK 76 (261)
T ss_pred CEEeCCCeEEEEE-EcCccc-cccCCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEE--ECCHHH
Confidence 5899999999998 999986 67899999999999999999997543 222234689999999999999999 568988
Q ss_pred HHHHhCCcccccccchHHHHHHHHHhhcCCHHHHHH-hHHHHHHHHHHHHHHHHhcC--CeEEEEEEeecccCCHHHHHH
Q psy5087 120 VYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLIT-QRQQVSLLVKSQLIERAKDF--NIILDDVSITDLSFGKDYTAA 196 (388)
Q Consensus 120 ~~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~I~~v~I~~i~~p~~v~~a 196 (388)
++.++ +..+..|.+.+++++|+++|+++++++++ +|++|++++.+.+++.++.| ||+|++|.|++++||+++.++
T Consensus 77 ~~~~~--~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a 154 (261)
T TIGR01933 77 YLFSV--ENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEA 154 (261)
T ss_pred HHHhC--CCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHH
Confidence 87654 45557799999999999999999999998 89999999999999999865 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhcCCCcceeehhHHHH
Q psy5087 197 VEAKQVAQQEAQRAV-------------------FVVERAKQEKQQKILQAEGEAEAAKKLGLAVGQNPGYLKLRKIRAA 257 (388)
Q Consensus 197 ie~~~~Aeqe~~~~~-------------------~~~~~Aea~aea~~i~AegeAea~~~~aea~~~~p~~~~~r~i~~~ 257 (388)
+++++.|+|++++++ ..+..|++++++++++|+|+|++.+++++||+++|+++++
T Consensus 155 ~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~~p~~~~~------ 228 (261)
T TIGR01933 155 FDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKKAPDVTRE------ 228 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhChHHHHH------
Confidence 999998887654421 3457788889999999999999999999999999999988
Q ss_pred HHHhhhccceeeccccCCCcceEEEeecCCc
Q psy5087 258 QNIAHTRLHYVQAGGQNQTQDYFLLDVTNGI 288 (388)
Q Consensus 258 ~~i~~~~~~y~~~~~~~~~~d~f~~~~~s~~ 288 (388)
..++++|.+.++ ..++.+++++++++
T Consensus 229 ---~~~le~~~~~~~--~~~~~~~~~~~~~~ 254 (261)
T TIGR01933 229 ---RLYLETMEKVLS--NTRKVLLDDKKGNN 254 (261)
T ss_pred ---HHHHHHHHHHHc--cCCeEEEECCCCCe
Confidence 445555555553 23456777777665
No 8
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=9e-36 Score=281.22 Aligned_cols=224 Identities=19% Similarity=0.268 Sum_probs=182.3
Q ss_pred HHHHHHHhhcceEEecCCeEEEEEeecCceeeeEecCceeEEccccceeEEE-Eeeeee----------ee-e--ccccc
Q psy5087 30 AGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIY-DIRSRP----------RK-I--SSPTG 95 (388)
Q Consensus 30 ~~~~~~~l~~s~~~V~~ge~gVv~~~fG~~~~~~~~pGl~f~~P~~~~v~~~-d~r~~~----------~~-~--~~~~~ 95 (388)
++++++++++|+++|++||+|||+ +||+++ .+++||+||++||++++..+ +++.+. .. . ...+.
T Consensus 4 ~~~~~~~~~~s~~~V~~ge~gVV~-~fGk~~-~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (266)
T cd03404 4 ALLVILWLLSGFYIVQPGERGVVL-RFGKYS-RTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLML 81 (266)
T ss_pred HHHHHHHHHcEEEEECCCceEEeE-EcCccc-cccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccceE
Confidence 344455667899999999999997 999997 78999999999999887544 342211 11 1 12357
Q ss_pred cCCccEEEEEEEEEEeeCCCCHHHHHHHhCCcccccccchHHHHHHHHHhhcCCHHHHHHh-HHHHHHHHHHHHHHHHhc
Q psy5087 96 SKDLQMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQ-RQQVSLLVKSQLIERAKD 174 (388)
Q Consensus 96 tkD~~~v~v~v~v~~r~~~~d~~~~~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~~-R~~i~~~i~~~l~~~l~~ 174 (388)
|+|++.|.+++.+.|| +.|+..++.+.. ..+..|.+.+++++|+++|++++++++++ |+++.+++++.+++.++.
T Consensus 82 T~D~~~v~vd~~v~yr--I~d~~~~~~~~~--~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~ 157 (266)
T cd03404 82 TGDENIVDVEFAVQYR--ISDPYDYLFNVR--DPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDA 157 (266)
T ss_pred eCCCCEEEEEEEEEEE--ECCHHHHHhhCC--CHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999 568888766543 34568999999999999999999999986 999999999999999987
Q ss_pred C--CeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHhhhhhHH
Q psy5087 175 F--NIILDDVSITDLSFGKDYTAAVEAKQVAQQEAQRAV-------------------FVVERAKQEKQQKILQAEGEAE 233 (388)
Q Consensus 175 ~--Gi~I~~v~I~~i~~p~~v~~aie~~~~Aeqe~~~~~-------------------~~~~~Aea~aea~~i~AegeAe 233 (388)
| |++|++|.|++++||+++.+++++++.|+|++++++ ..+..|+++|++.+++|+|+|+
T Consensus 158 ~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~ 237 (266)
T cd03404 158 YKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAA 237 (266)
T ss_pred cCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 6 999999999999999999999999888887644332 3456677788888999999999
Q ss_pred HHHHHHhHhcCCCcceeehh-HHHHHH
Q psy5087 234 AAKKLGLAVGQNPGYLKLRK-IRAAQN 259 (388)
Q Consensus 234 a~~~~aea~~~~p~~~~~r~-i~~~~~ 259 (388)
+.++++++|+++|+.+..+. +++.++
T Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~~~~~ 264 (266)
T cd03404 238 RFESLLAEYKKAPDVTRERLYLETMEE 264 (266)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 99999999999998775543 444433
No 9
>KOG3083|consensus
Probab=100.00 E-value=1.5e-34 Score=251.89 Aligned_cols=233 Identities=54% Similarity=0.852 Sum_probs=221.3
Q ss_pred HHHHHhhcceEEecCCeEEEEEeecCceeeeEecCceeEEccccceeEEEEeeeeeeeeccccccCCccEEEEEEEEEEe
Q psy5087 32 AAAYGVSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLAR 111 (388)
Q Consensus 32 ~~~~~l~~s~~~V~~ge~gVv~~~fG~~~~~~~~pGl~f~~P~~~~v~~~d~r~~~~~~~~~~~tkD~~~v~v~v~v~~r 111 (388)
++.-++.+++|.|+.|+.+|+++||.++.+.+.+.|.||.+||.|+.+.||.|.+...++..+.+||.++|++...+.+|
T Consensus 18 v~~~~~~s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw~qk~~i~d~rs~p~~v~~itGskdLQ~VniTlril~r 97 (271)
T KOG3083|consen 18 VAGGVVNSALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFR 97 (271)
T ss_pred HhhhhhhhhhcccCCCceeEEeecccchhhhcccCCceeeeeeccCcEEEeccCCCcccccccCchhhhcccceEEEEec
Confidence 34455778999999999999999999999999999999999999999999999999888888899999999999999999
Q ss_pred eCCCCHHHHHHHhCCcccccccchHHHHHHHHHhhcCCHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCH
Q psy5087 112 PDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGK 191 (388)
Q Consensus 112 ~~~~d~~~~~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~I~~v~I~~i~~p~ 191 (388)
..+..++.+|.++|.||.++.|-.+....|++++++++..|++++|+.+...+++.+.++.+.+|+.++||.|+.+.+..
T Consensus 98 p~~sqLP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGk 177 (271)
T KOG3083|consen 98 PVVSQLPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGK 177 (271)
T ss_pred ccccccchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhcC-CCcceeehhHHHHHHHhhhc
Q psy5087 192 DYTAAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLGLAVGQ-NPGYLKLRKIRAAQNIAHTR 264 (388)
Q Consensus 192 ~v~~aie~~~~Aeqe~~~~~~~~~~Aea~aea~~i~AegeAea~~~~aea~~~-~p~~~~~r~i~~~~~i~~~~ 264 (388)
+..+++|.|+.|+||+||++..++.|++++++.+++||||++|+++++.++++ ...++++|.+|+.++++..+
T Consensus 178 EFt~AvE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds~aA~li~~sla~aG~gLielrrlEAa~dia~~L 251 (271)
T KOG3083|consen 178 EFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSKAAELIANSLATAGDGLIELRRLEAAEDIAYQL 251 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccchHHHHHHHHHHhhcCCceeeehhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999875 46899999999999887654
No 10
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=8.4e-34 Score=266.84 Aligned_cols=194 Identities=22% Similarity=0.287 Sum_probs=172.9
Q ss_pred CCeEEEEEeecCceeeeEecCceeEEccccceeE-EEEeeeeeeeeccccccCCccEEEEEEEEEEeeCCCCHHHHHHHh
Q psy5087 46 GGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPI-IYDIRSRPRKISSPTGSKDLQMVNISLRVLARPDASKLPKVYQHL 124 (388)
Q Consensus 46 ~ge~gVv~~~fG~~~~~~~~pGl~f~~P~~~~v~-~~d~r~~~~~~~~~~~tkD~~~v~v~v~v~~r~~~~d~~~~~~~~ 124 (388)
+|+.|||. +||++. .+++||+||++||++++. .+|++.++++++..+.|+|++.|++++.++||+...++.+++.++
T Consensus 1 q~~~~Vv~-rfGk~~-~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~ 78 (262)
T cd03407 1 QSQVAIIE-RFGKFF-KVAWPGCHFVIPLVETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKL 78 (262)
T ss_pred CcEEEEEe-ecCccc-ccCCCCeEEEeccccceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHc
Confidence 58999997 999996 679999999999999984 899999999988778999999999999999997655555888887
Q ss_pred CCcccccccchHHHHHHHHHhhcCCHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHH
Q psy5087 125 GLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAKQVAQ 204 (388)
Q Consensus 125 g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~I~~v~I~~i~~p~~v~~aie~~~~Ae 204 (388)
++ ....|.+.+++++|+++|++++++++++|++|++.+.+.+++.+++|||.|++|.|++++||+++.++|++++.|+
T Consensus 79 ~~--~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~ 156 (262)
T cd03407 79 GN--PEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQ 156 (262)
T ss_pred CC--HHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHH
Confidence 63 3357999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH--------HHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhc
Q psy5087 205 QEAQRAV--------FVVERAKQEKQQKILQAEGEAEAAKKLGLAVG 243 (388)
Q Consensus 205 qe~~~~~--------~~~~~Aea~aea~~i~AegeAea~~~~aea~~ 243 (388)
++++++. ..+..|++++++.+++|+|+|++.++++++..
T Consensus 157 ~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~ 203 (262)
T cd03407 157 RQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLR 203 (262)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 8766442 45677888999999999999999888888754
No 11
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=5e-33 Score=260.82 Aligned_cols=202 Identities=16% Similarity=0.239 Sum_probs=175.4
Q ss_pred hhcceEEecCCeEEEEEeecCceeeeEecCceeEEccccceeEEEEeeeeeeeec-cccccCCccEEEEE-EEEEEeeCC
Q psy5087 37 VSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKIS-SPTGSKDLQMVNIS-LRVLARPDA 114 (388)
Q Consensus 37 l~~s~~~V~~ge~gVv~~~fG~~~~~~~~pGl~f~~P~~~~v~~~d~r~~~~~~~-~~~~tkD~~~v~v~-v~v~~r~~~ 114 (388)
+++|+++|++||+||++ +||++.+.+++||+||++||++++..++++.++++.. ..+.|+|++.+.++ +.+.|++++
T Consensus 1 ~~ssv~iV~ege~gVV~-RfGkv~~~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp 79 (280)
T cd03406 1 LSSALHKIEEGHVGVYY-RGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIP 79 (280)
T ss_pred CCceEEEECCCeEEEEE-ECCcccccccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCH
Confidence 35789999999999998 9999977889999999999999999999999988764 45788999999999 456676555
Q ss_pred CCHHHHHHHhCCcccccccchHHHHHHHHHhhcCCHHHHHH-hHHHHHHHHHHHHHHHHhcC--CeEEEEEEeecccCCH
Q psy5087 115 SKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLIT-QRQQVSLLVKSQLIERAKDF--NIILDDVSITDLSFGK 191 (388)
Q Consensus 115 ~d~~~~~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~I~~v~I~~i~~p~ 191 (388)
..+.+.+.+++.++...+|.+.+++++|+++|+++++++++ +|+++.+.+++.+++.+++| ||+|++|+|++++||+
T Consensus 80 ~~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~ 159 (280)
T cd03406 80 DSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPE 159 (280)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCH
Confidence 55555555566567788999999999999999999999997 89999999999999999987 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q psy5087 192 DYTAAVEAKQVAQQEAQ-----RAVFVVERAKQEKQQKILQAEGEAEAAKKLGL 240 (388)
Q Consensus 192 ~v~~aie~~~~Aeqe~~-----~~~~~~~~Aea~aea~~i~AegeAea~~~~ae 240 (388)
++.+++ ++|.||++.. +.++....||+++.+.+++|+|+|+..+|..+
T Consensus 160 ~V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~~~ 212 (280)
T cd03406 160 AIRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILFG 212 (280)
T ss_pred HHHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 999997 6888887655 44566777999999999999999999887543
No 12
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=100.00 E-value=3.8e-32 Score=248.62 Aligned_cols=203 Identities=24% Similarity=0.357 Sum_probs=172.6
Q ss_pred ecCCeEEEEEeecCceeeeEecCceeEEcccccee-EEEEeeeeeeeeccc-cccCCccEEEEEEEEEEeeCCCCHHHHH
Q psy5087 44 VEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYP-IIYDIRSRPRKISSP-TGSKDLQMVNISLRVLARPDASKLPKVY 121 (388)
Q Consensus 44 V~~ge~gVv~~~fG~~~~~~~~pGl~f~~P~~~~v-~~~d~r~~~~~~~~~-~~tkD~~~v~v~v~v~~r~~~~d~~~~~ 121 (388)
|++||+||++ +||++.+ +++||+||++||++++ +.+|++.++++++.. +.|+|++++.+++.+.|| +.||..++
T Consensus 1 V~~ge~~Vv~-~~G~~~~-~~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yr--I~d~~~~~ 76 (215)
T cd03403 1 VPQYERGVVE-RLGKYHR-TLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYR--VVDPVKAV 76 (215)
T ss_pred CCcceEEEEE-EcCcCcc-ccCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEE--EecHHHHH
Confidence 7899999998 9999974 6899999999999999 999999999988654 689999999999999999 57898887
Q ss_pred HHhCCcccccccchHHHHHHHHHhhcCCHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHH
Q psy5087 122 QHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAKQ 201 (388)
Q Consensus 122 ~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~I~~v~I~~i~~p~~v~~aie~~~ 201 (388)
..+. .....+.+.+++++|+++|++++++++++|+++++.+++.+++.+++|||+|++|.|+++++|+++.+++++++
T Consensus 77 ~~~~--~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~ 154 (215)
T cd03403 77 YGVE--DYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQA 154 (215)
T ss_pred hcCC--CHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHH
Confidence 6653 34457899999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhc---CCCcceeehhHHHHHHHhhhccc
Q psy5087 202 VAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLGLAVG---QNPGYLKLRKIRAAQNIAHTRLH 266 (388)
Q Consensus 202 ~Aeqe~~~~~~~~~~Aea~aea~~i~AegeAea~~~~aea~~---~~p~~~~~r~i~~~~~i~~~~~~ 266 (388)
.|++ ++++.+++|+|+++|.++.++|.+ .+|...+++.+++.+.++++..+
T Consensus 155 ~A~~--------------~~~a~i~~A~ge~~a~~~~aea~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 208 (215)
T cd03403 155 EAER--------------EKRAKIIEAEGERQAAILLAEAAKQAAINPAALQLRELETLEEIAKEAAS 208 (215)
T ss_pred HHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccCC
Confidence 7644 445555666666666666666543 25777888999998888876543
No 13
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4e-30 Score=245.88 Aligned_cols=205 Identities=28% Similarity=0.401 Sum_probs=169.6
Q ss_pred HHHHHHHHhhcceEEecCCeEEEEEeecCceeeeEec-CceeEEccc----cceeEEEEeeeeeeee-cc-ccccCCccE
Q psy5087 29 LAGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQNNVFA-EGLHFRLPW----FQYPIIYDIRSRPRKI-SS-PTGSKDLQM 101 (388)
Q Consensus 29 ~~~~~~~~l~~s~~~V~~ge~gVv~~~fG~~~~~~~~-pGl~f~~P~----~~~v~~~d~r~~~~~~-~~-~~~tkD~~~ 101 (388)
+++++++++++++++|++++.+++. +||++. ..+. ||+||++|| ......++.+.++++. +. .+.|+|+..
T Consensus 9 ~l~~~~~~~~~~~~~v~~~~~~vv~-r~G~~~-~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~ 86 (291)
T COG0330 9 LLVILIVLLFSSIFVVKEGERGVVL-RFGRYT-RTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVI 86 (291)
T ss_pred HHHHHHHHHHceeEEEcCCceEEEE-Eeccee-eecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCE
Confidence 3444556678899999999999998 999996 5566 999999999 3344677778888888 43 378999999
Q ss_pred EEEEEEEEEeeCCCCHHHHHHHhCCcccccccchHHHHHHHHHhhcCCHHHHHHhHH-HHHHHHHHHHHHHHhcCCeEEE
Q psy5087 102 VNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQ-QVSLLVKSQLIERAKDFNIILD 180 (388)
Q Consensus 102 v~v~v~v~~r~~~~d~~~~~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~~R~-~i~~~i~~~l~~~l~~~Gi~I~ 180 (388)
|.+++.++|| ++|+..++.++.. .+..+.+.+++.+|+++|++++++++++|+ .|+..+.+.+++.+++||+.|.
T Consensus 87 V~vd~~v~~r--v~d~~~~~~~v~~--~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~ 162 (291)
T COG0330 87 VSVDAVVQYR--VTDPQKAVYNVEN--AEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVV 162 (291)
T ss_pred EEEEEEEEEE--EcCHHHHHHhcCC--HHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEE
Confidence 9999999999 6899988877753 667899999999999999999999999888 9999999999999999999999
Q ss_pred EEEeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHh
Q psy5087 181 DVSITDLSFGKDYTAAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLGLAV 242 (388)
Q Consensus 181 ~v~I~~i~~p~~v~~aie~~~~Aeqe~~~~~~~~~~Aea~aea~~i~AegeAea~~~~aea~ 242 (388)
+|+|+++++|+++..++++++.|+++.++ .+..|++++++.+++|+|+++|+.+.++|.
T Consensus 163 ~V~i~~i~~p~ev~~a~~~~~~Aer~~ra---~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~ 221 (291)
T COG0330 163 DVEIKDIDPPEEVQAAMEKQMAAERDKRA---EILEAEGEAQAAILRAEGEAEAAIILAEAE 221 (291)
T ss_pred EEEEeecCCCHHHHHHHHHHHHHHHHHHH---HHHHhHhHHhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999887665 344455555555555555555555555554
No 14
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.97 E-value=1.4e-29 Score=230.97 Aligned_cols=162 Identities=16% Similarity=0.200 Sum_probs=145.2
Q ss_pred ceEEecCCeEEEEEeecCceeeeEecCceeEEccccceeEEEEeeeeeeeeccc-cccCCccEEEEEEEEEEeeCCCCHH
Q psy5087 40 SMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISSP-TGSKDLQMVNISLRVLARPDASKLP 118 (388)
Q Consensus 40 s~~~V~~ge~gVv~~~fG~~~~~~~~pGl~f~~P~~~~v~~~d~r~~~~~~~~~-~~tkD~~~v~v~v~v~~r~~~~d~~ 118 (388)
|+|+|+|||.||++ +||++.+.+.+||+||++||++. .++|+|.++++.+.. +.|+|+.++.+++.+.|| +.||.
T Consensus 1 g~~iV~~ge~~Vv~-rfGk~~~t~~~pGL~~~~P~~~~-~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~r--V~Dp~ 76 (219)
T cd03402 1 GLFVVEPNQARVLV-LFGRYIGTIRRTGLRWVNPFSSK-KRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWR--VVDTA 76 (219)
T ss_pred CeEEECCCeeEEEE-EcCcCcccccCCceEEEeccceE-EEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEE--EcCHH
Confidence 68999999999997 99999876679999999999964 789999999887754 789999999999999999 67999
Q ss_pred HHHHHhCCcccccccchHHHHHHHHHhhcCCHHHHHH-------hHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCH
Q psy5087 119 KVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLIT-------QRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGK 191 (388)
Q Consensus 119 ~~~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~-------~R~~i~~~i~~~l~~~l~~~Gi~I~~v~I~~i~~p~ 191 (388)
+++.++. ..+..+.+.+++++|+++|+++++++++ +|++|++++++.+++.++.|||+|.+++|++++||+
T Consensus 77 ka~~~v~--~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~ 154 (219)
T cd03402 77 KAVFNVD--DYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAP 154 (219)
T ss_pred HHHHHcC--CHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCH
Confidence 9887663 3466899999999999999999999985 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5087 192 DYTAAVEAKQVAQQEA 207 (388)
Q Consensus 192 ~v~~aie~~~~Aeqe~ 207 (388)
++.++|+++|+|+++.
T Consensus 155 ei~~am~~R~~Ae~~~ 170 (219)
T cd03402 155 EIAQAMLQRQQASAII 170 (219)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988864433
No 15
>KOG2621|consensus
Probab=99.95 E-value=1.6e-27 Score=215.55 Aligned_cols=217 Identities=20% Similarity=0.310 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHHhhcceEEecCCeEEEEEeecCceee-eEecCceeEEccccceeEEEEeeeeeeeeccc-cccCCccE
Q psy5087 24 LKLAALAGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQN-NVFAEGLHFRLPWFQYPIIYDIRSRPRKISSP-TGSKDLQM 101 (388)
Q Consensus 24 ~~~~~~~~~~~~~l~~s~~~V~~ge~gVv~~~fG~~~~-~~~~pGl~f~~P~~~~v~~~d~r~~~~~~~~~-~~tkD~~~ 101 (388)
+.++++++..-+-++.|+.+|++-|.+||+ |+|++.. ...+||+.|.+|++++..++|+|.+.++++.+ ..|||.+.
T Consensus 38 ~S~llvi~TfP~S~~fclKiv~eYeR~VIf-RLGRl~~~~~rGPGi~fvlPCIDt~~kVDLRt~sfnVPpqeIltkDsvt 116 (288)
T KOG2621|consen 38 LSFLLVLMTFPISIWFCLKIVQEYERAVIF-RLGRLRTGGARGPGLFFLLPCIDTFRKVDLRTQSFNVPPQEILTKDSVT 116 (288)
T ss_pred HHHHHHHHHhHHHHHHHHHhhHHHhhhhhe-eeeeccccCCCCCCeEEEecccceeeeeeeeEEeecCCHHHHhcccceE
Confidence 333444444445667788999999999999 9999853 36799999999999999999999999999865 78999999
Q ss_pred EEEEEEEEEeeCCCCHHHHHHHhCCcccccccchHHHHHHHHHhhcCCHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEE
Q psy5087 102 VNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDD 181 (388)
Q Consensus 102 v~v~v~v~~r~~~~d~~~~~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~I~~ 181 (388)
+.+++.|+|| +.||...+.++++ ...-.+-++++.+|+++|+.++.|++++|+.|+.+++..|++....||++|++
T Consensus 117 vsVdAvVyyr--i~dpi~sv~~V~D--a~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeR 192 (288)
T KOG2621|consen 117 ISVDAVVYYR--ISDPIIAVNNVGD--ADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVER 192 (288)
T ss_pred EEeceEEEEE--ecCHHHHHHhccC--HHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEE
Confidence 9999999999 6899988888764 22334557899999999999999999999999999999999999999999999
Q ss_pred EEeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhH---hcCCCcceeehhHHHHH
Q psy5087 182 VSITDLSFGKDYTAAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLGLA---VGQNPGYLKLRKIRAAQ 258 (388)
Q Consensus 182 v~I~~i~~p~~v~~aie~~~~Aeqe~~~~~~~~~~Aea~aea~~i~AegeAea~~~~aea---~~~~p~~~~~r~i~~~~ 258 (388)
|.|+|+.+|.+.+.++... +.|.+++.++++-||||..|.+.+++| .+++|..+++|+++...
T Consensus 193 VEikDvrlp~qlqramaae--------------AeA~reA~Akviaaege~~as~al~~aa~v~~~sp~alqLryLqtl~ 258 (288)
T KOG2621|consen 193 VEIKDVRLPAQLQRAMAAE--------------AEATREARAKVIAAEGEKKASEALKEAADVISESPIALQLRYLQTLN 258 (288)
T ss_pred EEEeeeechHhhhhhhhch--------------hhhhhhhhhhHHHHHhhhHHHHHHHHhhccccCCchhhhhhhhhcch
Confidence 9999999999987776432 225667788999999999998888776 77899999999877743
Q ss_pred H
Q psy5087 259 N 259 (388)
Q Consensus 259 ~ 259 (388)
.
T Consensus 259 s 259 (288)
T KOG2621|consen 259 S 259 (288)
T ss_pred h
Confidence 3
No 16
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.95 E-value=1.1e-27 Score=212.07 Aligned_cols=163 Identities=29% Similarity=0.470 Sum_probs=113.3
Q ss_pred EEecCCeEEEEEeecCceeeeEecCceeEEccccceeEEEEeeeeeeeecc---ccccCCccEEEEEEEEEEeeCCCCHH
Q psy5087 42 FTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISS---PTGSKDLQMVNISLRVLARPDASKLP 118 (388)
Q Consensus 42 ~~V~~ge~gVv~~~fG~~~~~~~~pGl~f~~P~~~~v~~~d~r~~~~~~~~---~~~tkD~~~v~v~v~v~~r~~~~d~~ 118 (388)
++|++||+||++ ++|++. .+++||+||++||+++++.+|++.+++++.. .+.|+|+.++++++.+.|++ +|+.
T Consensus 1 ~~V~~g~~~V~~-~~G~~~-~~~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i--~~~~ 76 (179)
T PF01145_consen 1 YTVPPGEVGVVV-RFGKVK-DVLGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRI--EDPP 76 (179)
T ss_dssp ---------------------------------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEE--S-CC
T ss_pred CEeCCCEEEEEE-ECCeEe-EEECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEe--chHH
Confidence 579999999998 799996 4899999999999999999999999999987 68999999999999999996 8888
Q ss_pred HHHHHhC--CcccccccchHHHHHHHHHhhcCCHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHH
Q psy5087 119 KVYQHLG--LDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAA 196 (388)
Q Consensus 119 ~~~~~~g--~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~I~~v~I~~i~~p~~v~~a 196 (388)
.++.+++ .+..+..|++.+++++|++++++++++++++|.++.+.+++.+++.+.++||+|.+|+|.++.+|+++.++
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~ 156 (179)
T PF01145_consen 77 KFVQNYEGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEA 156 (179)
T ss_dssp CCCCCCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHH
T ss_pred HHHHhhhcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHH
Confidence 8888882 25677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy5087 197 VEAKQVAQQEAQ 208 (388)
Q Consensus 197 ie~~~~Aeqe~~ 208 (388)
+++++.|+++++
T Consensus 157 i~~~~~a~~~~~ 168 (179)
T PF01145_consen 157 IEEKQRAEQEAQ 168 (179)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHH
Confidence 999888877764
No 17
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.94 E-value=3.9e-26 Score=198.65 Aligned_cols=157 Identities=25% Similarity=0.398 Sum_probs=141.7
Q ss_pred cceEEecCCeEEEEEeecCceeeeEecCceeEEccccceeEEEEeeeeeeeecc-ccccCCccEEEEEEEEEEeeCCCCH
Q psy5087 39 QSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISS-PTGSKDLQMVNISLRVLARPDASKL 117 (388)
Q Consensus 39 ~s~~~V~~ge~gVv~~~fG~~~~~~~~pGl~f~~P~~~~v~~~d~r~~~~~~~~-~~~tkD~~~v~v~v~v~~r~~~~d~ 117 (388)
+|+++|++||+||++ +||++.+ +++||+||++||+++++.+|++.++++.+. .+.|+|++++.+++.+.|| +.|+
T Consensus 1 ~~~~~V~~g~~~v~~-~~G~~~~-~~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~r--v~d~ 76 (160)
T smart00244 1 AAIKVVGEGEAGVVE-RLGRVLR-VLGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYR--VLDP 76 (160)
T ss_pred CcEEEEcccEEEEEE-ecCcccc-ccCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEE--EccH
Confidence 479999999999997 9999975 899999999999999999999999888765 4689999999999999998 6788
Q ss_pred HHHHHHhCCcccccccchHHHHHHHHHhhcCCHHHHHH-hHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHH
Q psy5087 118 PKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLIT-QRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAA 196 (388)
Q Consensus 118 ~~~~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~Gi~I~~v~I~~i~~p~~v~~a 196 (388)
..++.+..+ .....+.+.+++++|+++++++++++++ +|+++.+.+++.+++.++++|++|.++.|+++++|++++++
T Consensus 77 ~~~~~~~~~-~~~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~a 155 (160)
T smart00244 77 LKAVYRVLD-ADYAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEA 155 (160)
T ss_pred HHHhhhcCC-HHHHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHH
Confidence 887766542 2225799999999999999999999998 79999999999999999999999999999999999999999
Q ss_pred HHHH
Q psy5087 197 VEAK 200 (388)
Q Consensus 197 ie~~ 200 (388)
++++
T Consensus 156 i~~k 159 (160)
T smart00244 156 MEQQ 159 (160)
T ss_pred HHhh
Confidence 9875
No 18
>KOG2620|consensus
Probab=99.92 E-value=5.1e-26 Score=203.37 Aligned_cols=186 Identities=17% Similarity=0.192 Sum_probs=151.1
Q ss_pred EecCCeEEEEEeecCceeeeEecCceeEEccccceeEEEE--eeeeeeeeccccccCCccEEEEEEEEEEeeCCCCHHHH
Q psy5087 43 TVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYD--IRSRPRKISSPTGSKDLQMVNISLRVLARPDASKLPKV 120 (388)
Q Consensus 43 ~V~~ge~gVv~~~fG~~~~~~~~pGl~f~~P~~~~v~~~d--~r~~~~~~~~~~~tkD~~~v~v~v~v~~r~~~~d~~~~ 120 (388)
.||+.+++|+ +||||+. ++++||+||..|+++++.... ++.+..+....+.|+|++.+.++.+++|| +-||.+-
T Consensus 11 ~VpQ~~a~Vv-ER~GkF~-~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~r--v~dp~~~ 86 (301)
T KOG2620|consen 11 FVPQQEAAVV-ERFGKFH-RILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYR--VVDPYAD 86 (301)
T ss_pred eechhHhHHH-HHhhhhh-hhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEE--Eeccccc
Confidence 4999999999 5999995 799999999999988764432 24444455556789999999999999999 4566653
Q ss_pred HHHhCCcccccccchHHHHHHHHHhhcCCHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHH
Q psy5087 121 YQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAK 200 (388)
Q Consensus 121 ~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~I~~v~I~~i~~p~~v~~aie~~ 200 (388)
=..||-+.++..+.+.+++.+|+.+|+++++.++.+|+.++..|.+.++..++.||++|....|+||.+|+.+..+|+++
T Consensus 87 dAsYgvenp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~~AM~~q 166 (301)
T KOG2620|consen 87 DASYGVENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVKRAMNMQ 166 (301)
T ss_pred ccccccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHHHHHHHH
Confidence 34456666667799999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy5087 201 QVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAA 235 (388)
Q Consensus 201 ~~Aeqe~~~~~~~~~~Aea~aea~~i~AegeAea~ 235 (388)
..|++... +.+..+|+++++++.+|||++++.
T Consensus 167 ~~AeR~kr---AailesEger~~~InrAEGek~s~ 198 (301)
T KOG2620|consen 167 NEAERMKR---AAILESEGERIAQINRAEGEKESK 198 (301)
T ss_pred HHHHHHHH---HHHhhhhhhhHHhhhhhcchhhhH
Confidence 77654332 234456666666666666665543
No 19
>KOG2962|consensus
Probab=99.87 E-value=3e-20 Score=163.26 Aligned_cols=176 Identities=14% Similarity=0.237 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHHhhcceEEecCCeEEEEEeecCceeeeEecCceeEEccccceeEEEEeeeeeeeec-cccccCCccE
Q psy5087 23 GLKLAALAGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKIS-SPTGSKDLQM 101 (388)
Q Consensus 23 ~~~~~~~~~~~~~~l~~s~~~V~~ge~gVv~~~fG~~~~~~~~pGl~f~~P~~~~v~~~d~r~~~~~~~-~~~~tkD~~~ 101 (388)
+.+++.++.+++.+++++++.|++|++||-+ |-|.....+.+||+|+.+||+.++..+.+..|+-++. .+|+|+.|+.
T Consensus 5 ~~~v~~~~a~~~~~~~s~vHkieEGHvgvYy-RGGALL~~~t~PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVl 83 (322)
T KOG2962|consen 5 AFLVAAAIALLVAFLSSAVHKIEEGHVGVYY-RGGALLTSITGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVL 83 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCceEEEE-ecceeeeccCCCCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEE
Confidence 3344444455556678889999999999988 8888878889999999999999999999999988875 4689999988
Q ss_pred EEEE-EEEEEeeCCCCHHHHHHHhCCcccccccchHHHHHHHHHhhcCCHHHHH-HhHHHHHHHHHHHHHHHHhcC--Ce
Q psy5087 102 VNIS-LRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLI-TQRQQVSLLVKSQLIERAKDF--NI 177 (388)
Q Consensus 102 v~v~-v~v~~r~~~~d~~~~~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~-~~R~~i~~~i~~~l~~~l~~~--Gi 177 (388)
+.+| +.|.-++.++-+.+...+|+.||...++-+.+...+.+.++.+++++++ .-.++|.+++++.|++++..+ |+
T Consensus 84 IyfdrIEVVN~L~~d~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl 163 (322)
T KOG2962|consen 84 IYFDRIEVVNFLRPDAVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGL 163 (322)
T ss_pred EEEehhhhhhhhchhHHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCc
Confidence 8876 3333344566677888999989999999999999999999999999999 678999999999999999764 99
Q ss_pred EEEEEEeecccCCHHHHHHHHH
Q psy5087 178 ILDDVSITDLSFGKDYTAAVEA 199 (388)
Q Consensus 178 ~I~~v~I~~i~~p~~v~~aie~ 199 (388)
+|..|+++....|+.++...|.
T Consensus 164 ~iqaVRVTKPkIPEaiRrN~E~ 185 (322)
T KOG2962|consen 164 EIQAVRVTKPKIPEAIRRNFEL 185 (322)
T ss_pred EEEEEEecCCCChHHHHHhHHH
Confidence 9999999999999999887754
No 20
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.83 E-value=1e-19 Score=165.29 Aligned_cols=160 Identities=16% Similarity=0.159 Sum_probs=132.2
Q ss_pred hhcceEEecCCeEEEEEeecCceeeeEecCceeEEc----ccc---------------ceeEEEEeeeeeeeec------
Q psy5087 37 VSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRL----PWF---------------QYPIIYDIRSRPRKIS------ 91 (388)
Q Consensus 37 l~~s~~~V~~ge~gVv~~~fG~~~~~~~~pGl~f~~----P~~---------------~~v~~~d~r~~~~~~~------ 91 (388)
..+|.++|++||.||++ ++|++.+ ++.||.|+.+ |++ ..++.++++.+.....
T Consensus 12 ~~~s~~iV~e~~~av~~-~~Gk~~~-~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 89 (207)
T cd03408 12 KNGSQLIVREGQAAVFV-NEGKVAD-VFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAPV 89 (207)
T ss_pred ccCCEEEEcCCcEEEEE-ECCEEEE-EecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCCe
Confidence 45689999999999998 9999975 5666666544 544 3477788887654321
Q ss_pred -cccccCCccEEEEEEEEEEeeCCCCHHHHHHHhCCc-------ccccccchHHHHHHHHHhhcCCHHHHHHh--HHHHH
Q psy5087 92 -SPTGSKDLQMVNISLRVLARPDASKLPKVYQHLGLD-------FDEKVLPSICNEVLKSVVAKFNASQLITQ--RQQVS 161 (388)
Q Consensus 92 -~~~~tkD~~~v~v~v~v~~r~~~~d~~~~~~~~g~~-------~~~~~l~~~~~~~lR~~~~~~~~~ei~~~--R~~i~ 161 (388)
....++|++++.+++.+.|| +.||.+++.++++. ..+..+.+.+++++|+++|++++++++.+ |++|+
T Consensus 90 ~~~~~~~~~v~v~v~~~~~~k--I~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~ 167 (207)
T cd03408 90 FGRDSEFGGVPLRAFGTYSLK--VTDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELS 167 (207)
T ss_pred eeeCCccceEEEEeeEEEEEE--EcCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHH
Confidence 12356788888888877777 68999999999642 24568999999999999999999999976 99999
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHH
Q psy5087 162 LLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAK 200 (388)
Q Consensus 162 ~~i~~~l~~~l~~~Gi~I~~v~I~~i~~p~~v~~aie~~ 200 (388)
+.+++.+++.++++|++|++|.|+++++|++++++++++
T Consensus 168 ~~v~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~r 206 (207)
T cd03408 168 KAVREALAPWFASFGLELVSVYIESISYPDEVQKLIDKR 206 (207)
T ss_pred HHHHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHhh
Confidence 999999999999999999999999999999999998764
No 21
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.80 E-value=7.5e-19 Score=146.73 Aligned_cols=120 Identities=23% Similarity=0.375 Sum_probs=111.6
Q ss_pred EEeeeeeeeeccccccCCccEEEEEEEEEEeeCCCCHHHHHHHhCCcccccccchHHHHHHHHHhhcCCHHHHHH-hHHH
Q psy5087 81 YDIRSRPRKISSPTGSKDLQMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLIT-QRQQ 159 (388)
Q Consensus 81 ~d~r~~~~~~~~~~~tkD~~~v~v~v~v~~r~~~~d~~~~~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~-~R~~ 159 (388)
||+|.++.+.+....|+|++.+.+++.+.||+.+.++..+|.++|.++.+..|.+.+++++|+++|+++++++++ +|++
T Consensus 3 ~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~~ 82 (124)
T cd03400 3 YSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRKE 82 (124)
T ss_pred ccceeeecccceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHHH
Confidence 677888877777789999999999999999998888888898988777778899999999999999999999996 8999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHH
Q psy5087 160 VSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAK 200 (388)
Q Consensus 160 i~~~i~~~l~~~l~~~Gi~I~~v~I~~i~~p~~v~~aie~~ 200 (388)
|++++++.+++.+++||++|++|+|++++||+++.++|++|
T Consensus 83 i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k 123 (124)
T cd03400 83 IESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999875
No 22
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.75 E-value=2.3e-16 Score=157.40 Aligned_cols=208 Identities=16% Similarity=0.179 Sum_probs=154.4
Q ss_pred HHHHHHHHhhcceEEecCCeEEEEEeecC--------ceeeeEecCceeEEccccceeEEEEeeeeeeeecc-ccccCCc
Q psy5087 29 LAGAAAYGVSQSMFTVEGGHRAIMFSRIG--------GVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISS-PTGSKDL 99 (388)
Q Consensus 29 ~~~~~~~~l~~s~~~V~~ge~gVv~~~fG--------~~~~~~~~pGl~f~~P~~~~v~~~d~r~~~~~~~~-~~~tkD~ 99 (388)
++++++||+...+|++.+...++|. .++ +....++.+|+||.+|++|+..+++++...+++.. ...|+|+
T Consensus 22 ~~ilv~if~~~~~y~~a~~~~aLI~-~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~t~Dg 100 (548)
T COG2268 22 LVILVLIFFGKRFYIIARPNEALIR-TGSKLGSKDEAGGGQKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDG 100 (548)
T ss_pred HHHHHHHHHhheeEEecCCCceEEE-eccccCCcccccCCccEEecCceEEecceeeeEEeeeeeeeeeeeeeeeEecCC
Confidence 3333344444467766555555554 331 33346899999999999999999999988888774 3689999
Q ss_pred cEEEEEEEEEEeeCC--CCHHHHHHHhCCc----ccccccchHHHHHHHHHhhcCCHHHHHHhHHHHHHHHHHHHHHHHh
Q psy5087 100 QMVNISLRVLARPDA--SKLPKVYQHLGLD----FDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAK 173 (388)
Q Consensus 100 ~~v~v~v~v~~r~~~--~d~~~~~~~~g~~----~~~~~l~~~~~~~lR~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~ 173 (388)
.++++++..+.++.. .|...+..++|.. +....+...+.+++|.+++++|+.++.++|..|.+.+.+.+..+|.
T Consensus 101 ~p~~v~~~a~v~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~ 180 (548)
T COG2268 101 MPLNVEAVAYVKIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLS 180 (548)
T ss_pred CccceeEEEEEEecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHH
Confidence 999988777777643 3677788888764 3567788999999999999999999999999999999999999999
Q ss_pred cCCeEEEEEEeecccCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q psy5087 174 DFNIILDDVSITDLSFG-------KDYTAAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLGL 240 (388)
Q Consensus 174 ~~Gi~I~~v~I~~i~~p-------~~v~~aie~~~~Aeqe~~~~~~~~~~Aea~aea~~i~AegeAea~~~~ae 240 (388)
+.|+.|+++.|.++..+ ..+.++.-.+++++--+. ..+..+|++++.++..+++..+|...-.+
T Consensus 181 k~Gl~l~s~~I~~i~d~~~~~~d~~~yLda~G~r~i~qv~~~---a~ia~~E~~~~t~i~i~~a~~~a~~~e~~ 251 (548)
T COG2268 181 KMGLVLDSLAINDINDTSKENQDPNNYLDALGRRRIAQVLQD---AEIAENEAEKETEIAIAEANRDAKLVELE 251 (548)
T ss_pred hcCeeeeeeeecccccccccccChhhhhhhcChHHHHHHHHH---HHHHHhhhhhhhHHHHHhhhhHHHHHhhh
Confidence 99999999999999999 888888866655442111 23334555555555555555555444333
No 23
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.63 E-value=1.4e-15 Score=127.70 Aligned_cols=116 Identities=13% Similarity=0.181 Sum_probs=100.5
Q ss_pred EEeeeeeeeeccc-cccCCccEEEEEEEEEEeeCCCCHHHHHHH----hCC---cccccccchHHHHHHHHHhhcCCHHH
Q psy5087 81 YDIRSRPRKISSP-TGSKDLQMVNISLRVLARPDASKLPKVYQH----LGL---DFDEKVLPSICNEVLKSVVAKFNASQ 152 (388)
Q Consensus 81 ~d~r~~~~~~~~~-~~tkD~~~v~v~v~v~~r~~~~d~~~~~~~----~g~---~~~~~~l~~~~~~~lR~~~~~~~~~e 152 (388)
+|+|.+.++++.+ ..|+|++++.+++.+.||+ .|+.+++.+ ++. +..+.++.+.+++++|+++|++++++
T Consensus 2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV--~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~e 79 (128)
T cd03399 2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKV--GGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEE 79 (128)
T ss_pred ccccceeeeccccceecCCCcEEEEEEEEEEEe--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 4678888888754 6899999999999999994 666655543 332 33578899999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHH
Q psy5087 153 LITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVE 198 (388)
Q Consensus 153 i~~~R~~i~~~i~~~l~~~l~~~Gi~I~~v~I~~i~~p~~v~~aie 198 (388)
++++|++|.+++.+.+++.+++||++|.+++|+++++|+.+.+++-
T Consensus 80 l~~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~ 125 (128)
T cd03399 80 IYEDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLG 125 (128)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcC
Confidence 9999999999999999999999999999999999999999887764
No 24
>KOG2668|consensus
Probab=99.49 E-value=1e-12 Score=122.47 Aligned_cols=160 Identities=10% Similarity=0.141 Sum_probs=129.7
Q ss_pred eEEecCCeEEEEEeecCceeeeEecCceeEEccccceeEEEEeeeeeeeeccc-cccCCccEEEEEEEEEEeeCCCCHHH
Q psy5087 41 MFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISSP-TGSKDLQMVNISLRVLARPDASKLPK 119 (388)
Q Consensus 41 ~~~V~~ge~gVv~~~fG~~~~~~~~pGl~f~~P~~~~v~~~d~r~~~~~~~~~-~~tkD~~~v~v~v~v~~r~~~~d~~~ 119 (388)
|+...+++..++. -+| +.+..+.+|- |.||| |++.++|+++.++++..+ +.|..++++.+....+..++.+|+..
T Consensus 2 f~~~~~~~~l~it-g~g-~~~~~lv~~~-wvf~w-q~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e 77 (428)
T KOG2668|consen 2 FKVAGASQYLAIT-GGG-IEDIKLVKKS-WVFPW-QQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE 77 (428)
T ss_pred CccCCccceEEee-ccc-ccCceecccc-eeeee-eeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence 4566777877763 444 4445555553 66677 899999999999999887 78999999999888888887888665
Q ss_pred HHH-----HhCC--cccccccchHHHHHHHHHhhcCCHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCH-
Q psy5087 120 VYQ-----HLGL--DFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGK- 191 (388)
Q Consensus 120 ~~~-----~~g~--~~~~~~l~~~~~~~lR~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~I~~v~I~~i~~p~- 191 (388)
+.. ..|. +....++..+++++.|.++|+||+++++.+|.++...+++..+.+|...||.|.+..|+|+...+
T Consensus 78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g 157 (428)
T KOG2668|consen 78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPG 157 (428)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccc
Confidence 432 2343 34556788899999999999999999999999999999999999999999999999999998777
Q ss_pred -HHHHHHHHHHHHH
Q psy5087 192 -DYTAAVEAKQVAQ 204 (388)
Q Consensus 192 -~v~~aie~~~~Ae 204 (388)
+|..++-+++.|+
T Consensus 158 ~~YlssLGka~tae 171 (428)
T KOG2668|consen 158 HEYLSSLGKATTAE 171 (428)
T ss_pred hHHHHHhhhHHHHH
Confidence 6988887766654
No 25
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.44 E-value=1.6e-12 Score=106.80 Aligned_cols=106 Identities=24% Similarity=0.302 Sum_probs=93.1
Q ss_pred ccccCCccEEEEEEEEEEeeCCCCHHHHHHHhCCcccccccchHHHHHHHHHhhcCCHHHHHHhHHHHHHHHHHHHHHHH
Q psy5087 93 PTGSKDLQMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERA 172 (388)
Q Consensus 93 ~~~tkD~~~v~v~v~v~~r~~~~d~~~~~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l 172 (388)
.+.|+|++++.+++++.|+ ++++..++.++........+.+.+.+++|+++++++++++.++|+++.+.+++.+.+.+
T Consensus 15 ~~~t~d~~~i~~~~~~~~~--v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v~~~l~~~~ 92 (121)
T cd02106 15 EVLTKDNVPVRVDAVVQYR--VVDPVKALYNVRDPEDEEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEVREALQEDL 92 (121)
T ss_pred eEEecCCCEEEEEEEEEEE--EeCHHHHHHhcCCccHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4678999999999999998 45666555555432225789999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEEEeecccCCHHHHHHHHHH
Q psy5087 173 KDFNIILDDVSITDLSFGKDYTAAVEAK 200 (388)
Q Consensus 173 ~~~Gi~I~~v~I~~i~~p~~v~~aie~~ 200 (388)
+++|++|.+|.|.++.+|+++.++++++
T Consensus 93 ~~~Gi~i~~v~i~~i~~~~~~~~ai~~~ 120 (121)
T cd02106 93 DKYGIEVVDVRIKDIDPPEEVQEAMEDR 120 (121)
T ss_pred HhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 9999999999999999999999999875
No 26
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=99.41 E-value=1.5e-11 Score=111.62 Aligned_cols=161 Identities=17% Similarity=0.165 Sum_probs=125.8
Q ss_pred hcceEEecCCeEEEEEeecCceeeeEecCceeEE-------------------ccccceeEEEEeeeee-eeeccc----
Q psy5087 38 SQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFR-------------------LPWFQYPIIYDIRSRP-RKISSP---- 93 (388)
Q Consensus 38 ~~s~~~V~~ge~gVv~~~fG~~~~~~~~pGl~f~-------------------~P~~~~v~~~d~r~~~-~~~~~~---- 93 (388)
..|-.+|++||.||.+ .-|++.+ +.+||.|-. .||-..|+.++++... .....+
T Consensus 13 ~GS~LiV~egQ~Avfv-~~G~i~d-~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~~~~~~~kwGT~~pi~ 90 (211)
T PF13421_consen 13 NGSQLIVREGQCAVFV-NDGKIAD-VFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNTKEITNIKWGTPNPIP 90 (211)
T ss_pred CCCEEEECCCCEEEEE-ECCEEEE-EecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEECeEecCCccCCCCCee
Confidence 4678899999999998 8899976 899999952 3666778888887642 333221
Q ss_pred cccCCccEEEEEEEEEEeeCCCCHHHHHHHhCC-c------ccccccchHHHHHHHHHhh--cCCHHHHHHhHHHHHHHH
Q psy5087 94 TGSKDLQMVNISLRVLARPDASKLPKVYQHLGL-D------FDEKVLPSICNEVLKSVVA--KFNASQLITQRQQVSLLV 164 (388)
Q Consensus 94 ~~tkD~~~v~v~v~v~~r~~~~d~~~~~~~~g~-~------~~~~~l~~~~~~~lR~~~~--~~~~~ei~~~R~~i~~~i 164 (388)
....+...|.+.+.-.|.+++.||..|+.++-+ + ....++++.+.+.+-+.++ ++++.++-+.-.+|++.+
T Consensus 91 ~~D~~~~~v~lra~G~ys~rI~Dp~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~ 170 (211)
T PF13421_consen 91 YRDPEYGPVRLRAFGTYSFRIVDPVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEAL 170 (211)
T ss_pred ecCCCCCcEEEEEEEEEEEEEeCHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 122232256676777777779999999998743 1 2345666776677777776 478889999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHH
Q psy5087 165 KSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAK 200 (388)
Q Consensus 165 ~~~l~~~l~~~Gi~I~~v~I~~i~~p~~v~~aie~~ 200 (388)
++.+++.++.+|++|.++.|.+|++|++.+++|.++
T Consensus 171 ~~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~~ 206 (211)
T PF13421_consen 171 KEKLNPEFERYGIELVDFGIESISFPEEVQKAIDKR 206 (211)
T ss_pred HHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHHH
Confidence 999999999999999999999999999999998764
No 27
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=98.72 E-value=4.3e-07 Score=83.26 Aligned_cols=162 Identities=12% Similarity=0.118 Sum_probs=121.9
Q ss_pred hcceEEecCCeEEEEEeecCceeeeEecCcee-------------------EEccccceeEEEEeeeee-eeeccc----
Q psy5087 38 SQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLH-------------------FRLPWFQYPIIYDIRSRP-RKISSP---- 93 (388)
Q Consensus 38 ~~s~~~V~~ge~gVv~~~fG~~~~~~~~pGl~-------------------f~~P~~~~v~~~d~r~~~-~~~~~~---- 93 (388)
-.|...|.|++-++.+ .-|++.+..-++|.+ |..|+-++|+.++++.+. +.....
T Consensus 38 nGs~l~Vrp~qmamfv-n~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eVyfvntqe~~girwGT~qpin 116 (345)
T COG4260 38 NGSILHVRPNQMAMFV-NGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEVYFVNTQEIKGIRWGTPQPIN 116 (345)
T ss_pred cCcEEEEecCceEEEE-cCCEEEeeecCCceeEeeecccchhhhhhcceecCCCcccceEEEEecceecceecCCCCCee
Confidence 3578899999999887 678887555557866 224677889999987755 444321
Q ss_pred c-ccCCccEEEEEEEEEEeeCCCCHHHHHHHhCCc-------ccccccchHHHHHHHHHhhcCCH--HHHHHhHHHHHHH
Q psy5087 94 T-GSKDLQMVNISLRVLARPDASKLPKVYQHLGLD-------FDEKVLPSICNEVLKSVVAKFNA--SQLITQRQQVSLL 163 (388)
Q Consensus 94 ~-~tkD~~~v~v~v~v~~r~~~~d~~~~~~~~g~~-------~~~~~l~~~~~~~lR~~~~~~~~--~ei~~~R~~i~~~ 163 (388)
. ..++.-.+.+...-.|.++++||..|+..+..+ +.+.++-+.+..+|...++++-. ..+-++.-+++..
T Consensus 117 ~~dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~elsk~ 196 (345)
T COG4260 117 YFDNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELSKY 196 (345)
T ss_pred cccccccceeEEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHHHH
Confidence 1 224444555655566777799999999887542 24556778888888888887643 3444678899999
Q ss_pred HHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHH
Q psy5087 164 VKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAK 200 (388)
Q Consensus 164 i~~~l~~~l~~~Gi~I~~v~I~~i~~p~~v~~aie~~ 200 (388)
+.+.|.+.+..+|..|++++|..|++|++.++.|.++
T Consensus 197 m~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~r 233 (345)
T COG4260 197 MAEVLDEQWTQYGMAVDSFQVASISYPDESQALINMR 233 (345)
T ss_pred HHHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHhh
Confidence 9999999999999999999999999999999999763
No 28
>KOG3597|consensus
Probab=98.64 E-value=9e-08 Score=94.75 Aligned_cols=122 Identities=18% Similarity=0.254 Sum_probs=92.4
Q ss_pred HHHhhhccceeeccccCCCcceEEEeecCCceEEeeeeEEEEEecCcceeecCCceeeecCcceecCCCCcCccCCC-CC
Q psy5087 258 QNIAHTRLHYVQAGGQNQTQDYFLLDVTNGILWIRGLQVNIIIVPEHIYLSSGDPVPVDEGGNITLLPSLLPLLSPY-YA 336 (388)
Q Consensus 258 ~~i~~~~~~y~~~~~~~~~~d~f~~~~~s~~~~l~~~~i~i~~~p~~~~l~~~~~~~v~EG~s~~l~~~~l~~~~~~-~~ 336 (388)
+++..+...|+.+.. +-..+.+.|..+.+....-.........+..+.+..+-.|.|.-|++..||+.+|.+.+.+ ..
T Consensus 106 ~~v~~g~~~yvh~g~-el~~~~~~~~~SDg~~~S~~~i~~~~~~~~~~~~~~~~gL~v~~gS~~~IT~~~L~ved~d~~~ 184 (442)
T KOG3597|consen 106 EEVEDGSLSYVHSGT-ELRESELQLRVSDGLLVSERAILKVEATGPAPHLARNTGLKVLQGSTAPITPSNLSVEDNDSSP 184 (442)
T ss_pred hHhhcCceeEEecCc-ccccceEEEEeecceEeeeeEEecccCCCcceeeecccceEEccCccccccHhHceeecCCCCC
Confidence 455667778888652 3456778888888874422111122223444445544459999999999999999999998 46
Q ss_pred cceEEEEEecCCCcceEEecCCc-----ccccccCHHHHhccceEeeee
Q psy5087 337 NRVTEYRIIRQARHGAVYFSSNK-----VAIMRCTPQQLQAGLIQDKES 380 (388)
Q Consensus 337 ~~~~~~~v~~~P~hG~l~~~~~~-----~~i~~Ft~~~i~~~~i~Y~~~ 380 (388)
..++.|.++.+|.||+|.+...+ .++..||++||.+|+|+|.|+
T Consensus 185 d~~v~~~i~~~P~~G~Lq~~~~~~d~~~~~v~~FtQ~dln~gqi~Y~~~ 233 (442)
T KOG3597|consen 185 DDEVRYDITPPPQHGHLQRTLQGEDDEWSPVSNFTQADLNEGQIRYIHT 233 (442)
T ss_pred CcEEEEEecCCCCCChhheeccccCCcceeeeeeEHHHHhCCceEEEeC
Confidence 66999999999999999988764 489999999999999999997
No 29
>PTZ00491 major vault protein; Provisional
Probab=97.90 E-value=0.00096 Score=70.66 Aligned_cols=150 Identities=11% Similarity=0.080 Sum_probs=93.2
Q ss_pred eEEecCCeEEEEEeecCceeeeEecCceeEEccccceeEEEEeee------eeee---e----c-----cccccCCccEE
Q psy5087 41 MFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRS------RPRK---I----S-----SPTGSKDLQMV 102 (388)
Q Consensus 41 ~~~V~~ge~gVv~~~fG~~~~~~~~pGl~f~~P~~~~v~~~d~r~------~~~~---~----~-----~~~~tkD~~~v 102 (388)
.|.||-+...-|++.=-+-.+.+.+|-+.+.-|- +....++++- ..+. + + +.+.|+|...+
T Consensus 464 ~~~vphn~avqvydyk~~~~Rvv~GP~~v~L~pd-E~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhArL 542 (850)
T PTZ00491 464 TYKVPHNAAVQLYDYKTKKSRVVFGPDLVMLEPD-EEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHARL 542 (850)
T ss_pred EEEcCCCcEEEEEEcccCceEEEECCceEEecCC-CceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccceE
Confidence 4567777655555322233356889999888886 3344444322 1110 0 0 12468898888
Q ss_pred EEEEEEEEeeCC--CCHHHHHHHhCC-cccccccchHHHHHHHHHhhcCCHHHHHHhHH-HHHHHHHHHHHH--------
Q psy5087 103 NISLRVLARPDA--SKLPKVYQHLGL-DFDEKVLPSICNEVLKSVVAKFNASQLITQRQ-QVSLLVKSQLIE-------- 170 (388)
Q Consensus 103 ~v~v~v~~r~~~--~d~~~~~~~~g~-~~~~~~l~~~~~~~lR~~~~~~~~~ei~~~R~-~i~~~i~~~l~~-------- 170 (388)
.+.++..|.+++ .|+...-+-+.. |+.. .+-..+.+.+|..+++.+++++..+-. -|.+.|.-...+
T Consensus 543 ~l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvG-d~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l 621 (850)
T PTZ00491 543 ALQLSYNWYFDVTDGNPEDAQKCFSVPDFVG-DACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSL 621 (850)
T ss_pred EEEEEEEEEEecCCCChhhHhheeccCchHH-HHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccce
Confidence 888888888753 456433333333 4443 355678899999999999999985433 334444442222
Q ss_pred HHhcCCeEEEEEEeecccCCHH
Q psy5087 171 RAKDFNIILDDVSITDLSFGKD 192 (388)
Q Consensus 171 ~l~~~Gi~I~~v~I~~i~~p~~ 192 (388)
.+...|+.|.+|-|+.+.+-++
T Consensus 622 ~F~~N~lvit~VDvqsvEpvD~ 643 (850)
T PTZ00491 622 RFPANNLVITNVDVQSVEPVDE 643 (850)
T ss_pred EEccCCeEEEEEeeeeeeecCH
Confidence 2356799999999999987754
No 30
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=97.18 E-value=0.0051 Score=56.82 Aligned_cols=158 Identities=18% Similarity=0.283 Sum_probs=96.6
Q ss_pred ccCCccEEEEEEEEEEeeCCCCHHHHHHHhCCcccccccchHHHHHHHHHhhcCCHHHHHHhHHHHHHHHHHHHHHHHh-
Q psy5087 95 GSKDLQMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAK- 173 (388)
Q Consensus 95 ~tkD~~~v~v~v~v~~r~~~~d~~~~~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~- 173 (388)
-.|||+.+.+.+.+..|- +...+ +|+...++++...-++.+-.+-+.-+-.+++.+-+.|...+.+. -|+
T Consensus 135 VAkdGIql~~kArVTVRa---Ni~rL---VGGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~ISk~VL~k---gLDa 205 (316)
T PF12127_consen 135 VAKDGIQLKVKARVTVRA---NIDRL---VGGAGEETIIARVGEGIVTTIGSAESHKEVLENPDSISKTVLEK---GLDA 205 (316)
T ss_pred hhcCCeEEEEEEEEEEEe---cHHHh---ccCCCcHHHHHHHccceeeeeccchhHHHHhcCHHHHHHHHHhh---CCCc
Confidence 569999988888888883 44433 35544555555555555555556677778888888888776544 343
Q ss_pred cCCeEEEEEEeecccCCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhh---hhhHHHHHHHHhHh
Q psy5087 174 DFNIILDDVSITDLSFGKDYTAAV------EAKQVAQQEAQRAVFVVERAKQEK--QQKILQA---EGEAEAAKKLGLAV 242 (388)
Q Consensus 174 ~~Gi~I~~v~I~~i~~p~~v~~ai------e~~~~Aeqe~~~~~~~~~~Aea~a--ea~~i~A---egeAea~~~~aea~ 242 (388)
.--++|.++-|-|++..+.+-..+ -+++.|+..+|+.++.....|+|- +.+..+| ++||+.-+.+++|+
T Consensus 206 gTAFeIlSIDIaDidVG~NIGA~Lq~dQAeADk~iAqAkAEeRRA~AvA~EQEm~A~vqe~rAkvVeAeaevP~A~aeAf 285 (316)
T PF12127_consen 206 GTAFEILSIDIADIDVGENIGAKLQTDQAEADKRIAQAKAEERRAMAVAREQEMKAKVQEMRAKVVEAEAEVPLAMAEAF 285 (316)
T ss_pred CceeEEEEeeeeccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhchHHHHHHH
Confidence 245899999999999988764433 234444444444333322223332 2222222 35677788899998
Q ss_pred cCC----CcceeehhHHHHHHHh
Q psy5087 243 GQN----PGYLKLRKIRAAQNIA 261 (388)
Q Consensus 243 ~~~----p~~~~~r~i~~~~~i~ 261 (388)
++. -+||+++.+++..++-
T Consensus 286 r~G~lGvmDYy~~~Ni~aDT~MR 308 (316)
T PF12127_consen 286 RSGNLGVMDYYNLKNIQADTEMR 308 (316)
T ss_pred HcCCCcchhhhhhhcccccchHH
Confidence 763 2666666666554443
No 31
>PRK13665 hypothetical protein; Provisional
Probab=97.04 E-value=0.0098 Score=54.69 Aligned_cols=154 Identities=21% Similarity=0.308 Sum_probs=92.4
Q ss_pred ccCCccEEEEEEEEEEeeCCCCHHHHHHHhCCcccccccchHHHHHHHHHhhcCCHHHHHHhHHHHHHHHHHHHHHHHhc
Q psy5087 95 GSKDLQMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKD 174 (388)
Q Consensus 95 ~tkD~~~v~v~v~v~~r~~~~d~~~~~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~ 174 (388)
-.|||+.+.+.+.+..| .+...+ +|+.-.++.+...=++.+-.+-+.-+-.+++.+-+.|+..+ |.+-|+.
T Consensus 140 VAkdGIql~~kARVTVR---aNi~rL---VGGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~ISk~V---L~kGLDa 210 (316)
T PRK13665 140 VAKDGIEVKAKARVTVR---ANIDRL---VGGAGEETIIARVGEGIVSTIGSSESHKEVLENPDSISKTV---LSKGLDA 210 (316)
T ss_pred hcccCeEEEEEEEEEee---hhHHHH---hCCCcceeeEeeecCceeecccCcchHHHHhcCHHHHHHHH---HhccCCc
Confidence 56999988888888777 344433 35544556665555555655666677788899998888554 3344543
Q ss_pred -CCeEEEEEEeecccCCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhh---hhhHHHHHHHHhHh
Q psy5087 175 -FNIILDDVSITDLSFGKDYTAAV------EAKQVAQQEAQRAVFVVERAKQEKQQKI--LQA---EGEAEAAKKLGLAV 242 (388)
Q Consensus 175 -~Gi~I~~v~I~~i~~p~~v~~ai------e~~~~Aeqe~~~~~~~~~~Aea~aea~~--i~A---egeAea~~~~aea~ 242 (388)
--++|.++-|-|++..+.+-..+ -+++.|+..+|+.++.....|+|-.+++ .+| |+||+.-+.+++|+
T Consensus 211 gTAFeIlSIDIADvdVG~NIGA~Lq~dQAEADk~iAqAkAEeRRAmAvA~EQEmkA~v~emrAkvVeAeaeVP~Ama~A~ 290 (316)
T PRK13665 211 GTAFEILSIDIADVDVGKNIGAKLQTDQAEADKRIAQAKAEERRAMAVALEQEMKAKVQEMRAKVVEAEAEVPLAMAEAL 290 (316)
T ss_pred CceeEEEEEeeeccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhchHHHHHHH
Confidence 45899999999999988764444 2344444444433322222222222211 111 34667778888888
Q ss_pred cCC----CcceeehhHHHH
Q psy5087 243 GQN----PGYLKLRKIRAA 257 (388)
Q Consensus 243 ~~~----p~~~~~r~i~~~ 257 (388)
++. -+||+++.+++.
T Consensus 291 r~G~lGvmDYy~~kNi~aD 309 (316)
T PRK13665 291 RSGNLGVMDYYNMKNIQAD 309 (316)
T ss_pred HcCCCchhhhhhhhccccc
Confidence 653 355655544443
No 32
>KOG3597|consensus
Probab=96.85 E-value=0.0018 Score=64.60 Aligned_cols=98 Identities=18% Similarity=0.277 Sum_probs=81.9
Q ss_pred HHHHhhhccceeecc-ccCCCcceEEEeecCCc--eEEeeeeEEEEEecCcceeecCCceeeecCcceecCCCCcCccCC
Q psy5087 257 AQNIAHTRLHYVQAG-GQNQTQDYFLLDVTNGI--LWIRGLQVNIIIVPEHIYLSSGDPVPVDEGGNITLLPSLLPLLSP 333 (388)
Q Consensus 257 ~~~i~~~~~~y~~~~-~~~~~~d~f~~~~~s~~--~~l~~~~i~i~~~p~~~~l~~~~~~~v~EG~s~~l~~~~l~~~~~ 333 (388)
.+++..+...|...+ ..+-.+|.|.|++..+. ..+..|.|++.+.|..+++.+.. +.|.||+...|++++|...+.
T Consensus 332 ~qdl~~gr~~y~~~~~~s~~~~d~~~frv~~~~~~~~~~~f~i~~~~~~~~~~~~~~~-~~v~~~~~~~i~~~~~~~~~~ 410 (442)
T KOG3597|consen 332 QQDLQAGRVTYQADLTQSDIVEDHFIFRVSGAPLDSVLFRFEIHIRPKPDLPVLVNTQ-LVVPEGEGQVIQPDHLGLSTL 410 (442)
T ss_pred ccchhhheeeeccceeeeeeccceEEEEEecCccccceeEEEeeecCCcccchhhcee-EEEecCCceeecccccccccc
Confidence 346677777774332 12335789999999886 34999999999999999999987 999999999999999999999
Q ss_pred CCCcceEEEEEecCCCcceEEecC
Q psy5087 334 YYANRVTEYRIIRQARHGAVYFSS 357 (388)
Q Consensus 334 ~~~~~~~~~~v~~~P~hG~l~~~~ 357 (388)
.+.++.|.++..|.||.|.+.-
T Consensus 411 --~~~s~~~~v~~~~~~~~i~~~~ 432 (442)
T KOG3597|consen 411 --DSDSYLFEVIFVTEHGPIFGNE 432 (442)
T ss_pred --ccccceeEEEEeccCcceeccc
Confidence 8889999999999999888763
No 33
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=95.23 E-value=0.56 Score=40.61 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=58.5
Q ss_pred EEEEEEEEEEeeCCCCHHHHHHHhCCcccccccchHHHHHHHHHhhcCCHHHHHH--hHHHHHHHHHHHHHHHHhcCCeE
Q psy5087 101 MVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLIT--QRQQVSLLVKSQLIERAKDFNII 178 (388)
Q Consensus 101 ~v~v~v~v~~r~~~~d~~~~~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~Gi~ 178 (388)
...+.+.+.|+++-... ...+. . =.+.+++++...+++.+.+++-+ .++++.+++++.+|+.|.+-+ .
T Consensus 78 ~~~v~i~i~l~~~n~~~---~~el~-----~-~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~-~ 147 (159)
T COG1580 78 DRYVKIAITLEVANKAL---LEELE-----E-KKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ-V 147 (159)
T ss_pred cEEEEEEEEEeeCCHHH---HHHHH-----H-hhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC-e
Confidence 35556667777532222 22221 1 24789999999999999999985 899999999999999998755 8
Q ss_pred EEEEEeeccc
Q psy5087 179 LDDVSITDLS 188 (388)
Q Consensus 179 I~~v~I~~i~ 188 (388)
|.+|.+++..
T Consensus 148 V~dV~fT~fi 157 (159)
T COG1580 148 VKDVLFTNFI 157 (159)
T ss_pred eEEEeeehhh
Confidence 8888887754
No 34
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=89.38 E-value=0.91 Score=42.67 Aligned_cols=54 Identities=13% Similarity=0.028 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHh--cCCCccee----ehhHHHHHHHhhhc
Q psy5087 211 VFVVERAKQEKQQKILQAEGEAEAAKKLGLAV--GQNPGYLK----LRKIRAAQNIAHTR 264 (388)
Q Consensus 211 ~~~~~~Aea~aea~~i~AegeAea~~~~aea~--~~~p~~~~----~r~i~~~~~i~~~~ 264 (388)
++.+..|+++|++.++.|+|++++...+.+++ .+.|+..+ ..+++++++++++.
T Consensus 182 ~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~~~ 241 (262)
T cd03407 182 EAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGRSS 241 (262)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHhCC
Confidence 36677899999999999999999999999887 44465554 23577777776543
No 35
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=88.33 E-value=16 Score=31.76 Aligned_cols=52 Identities=6% Similarity=0.032 Sum_probs=43.3
Q ss_pred chHHHHHHHHHhhcCCHHHHHH--hHHHHHHHHHHHHHHHHhcCCeEEEEEEeecc
Q psy5087 134 PSICNEVLKSVVAKFNASQLIT--QRQQVSLLVKSQLIERAKDFNIILDDVSITDL 187 (388)
Q Consensus 134 ~~~~~~~lR~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~Gi~I~~v~I~~i 187 (388)
.+.+++.+-..+++.+.+|+.+ .++.+.+++.+.+|..+.+- .|.+|.+++.
T Consensus 110 ~p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~--~V~~VlFt~F 163 (166)
T PRK12785 110 MPRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPA--QVNAVLFKEV 163 (166)
T ss_pred chHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCC--ceeEEEEEee
Confidence 4678889999999999999984 79999999999999988753 3777777654
No 36
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.89 E-value=5.4 Score=36.10 Aligned_cols=160 Identities=18% Similarity=0.254 Sum_probs=82.8
Q ss_pred cCCccEEEEEEEEEEeeCCCCHHHHHHHhCCcccccccchHHHHHHHHHhhcCCHHHHHHhHHHHHHHHHHHHHHHHhc-
Q psy5087 96 SKDLQMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKD- 174 (388)
Q Consensus 96 tkD~~~v~v~v~v~~r~~~~d~~~~~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~- 174 (388)
..|++.|.....+..|- +.. +-+|+...++.+...-++.+..+-++..-.+++.+-+.|.+.+... -|+.
T Consensus 140 am~gievkakaritvra---ni~---rlvggageetviarvgegivstigss~~h~~vlenpd~isktvl~k---gld~g 210 (328)
T COG4864 140 AMNGIEVKAKARITVRA---NIE---RLVGGAGEETVIARVGEGIVSTIGSSDEHTKVLENPDSISKTVLEK---GLDSG 210 (328)
T ss_pred eccceEEEEEEEEEehh---hHH---HHhCCCCchhhhhhhccceeeccCCCcchhhHhcCccHHHHHHHHc---cCCCC
Confidence 35777777666665552 223 2335544455444433343433444566667888888777665432 2322
Q ss_pred CCeEEEEEEeecccCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhh---hhhHHHHHHHHhHhc
Q psy5087 175 FNIILDDVSITDLSFGKDYT------AAVEAKQVAQQEAQRAVFVVERAKQE--KQQKILQA---EGEAEAAKKLGLAVG 243 (388)
Q Consensus 175 ~Gi~I~~v~I~~i~~p~~v~------~aie~~~~Aeqe~~~~~~~~~~Aea~--aea~~i~A---egeAea~~~~aea~~ 243 (388)
..++|.++-|-+++....+- ++-.++..|+..+++.+++...-|++ +..+..+| ++|||.-..+++|++
T Consensus 211 tafeilsidiadvdigkniga~lqteqa~adk~iaqakaeerramava~eqemrarveemrakvveaeaevp~als~alr 290 (328)
T COG4864 211 TAFEILSIDIADVDIGKNIGAKLQTEQAEADKNIAQAKAEERRAMAVALEQEMRARVEEMRAKVVEAEAEVPLALSEALR 290 (328)
T ss_pred ceeEEEEeeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34788888888888876653 33333444443333332221111111 11111222 345666677788876
Q ss_pred CC----CcceeehhHHHHHHHhhhc
Q psy5087 244 QN----PGYLKLRKIRAAQNIAHTR 264 (388)
Q Consensus 244 ~~----p~~~~~r~i~~~~~i~~~~ 264 (388)
+. -+||.++.+++..++-.+.
T Consensus 291 ~gnigvmdy~n~~nv~adt~mr~si 315 (328)
T COG4864 291 EGNIGVMDYYNMKNVQADTAMRDSI 315 (328)
T ss_pred hCCchhhhhhhhhcccccHHHHHHH
Confidence 53 2566666566655544443
No 37
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=87.75 E-value=1.4 Score=40.59 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=41.4
Q ss_pred EEEEeecccCCH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhc
Q psy5087 180 DDVSITDLSFGK-DYTAAVEAKQVAQQEAQRAV-FVVERAKQEKQQKILQAEGEAEAAKKLGLAVG 243 (388)
Q Consensus 180 ~~v~I~~i~~p~-~v~~aie~~~~Aeqe~~~~~-~~~~~Aea~aea~~i~AegeAea~~~~aea~~ 243 (388)
..+.|.++.+-+ .+-+.+.+.+..+..+++.+ +....|++++++.+++|++++++..+.|+|++
T Consensus 136 ~Gi~i~~v~i~~i~~p~~i~~ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a 201 (242)
T cd03405 136 LGIEVVDVRIKRIDLPEEVSESVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYR 201 (242)
T ss_pred cCcEEEEEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777642 23455555555555555544 66667777778877777777777777777764
No 38
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=87.67 E-value=1.6 Score=42.62 Aligned_cols=63 Identities=16% Similarity=0.253 Sum_probs=47.5
Q ss_pred EEEeecccCCH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhc
Q psy5087 181 DVSITDLSFGK-DYTAAVEAKQVAQQEAQRAV-FVVERAKQEKQQKILQAEGEAEAAKKLGLAVG 243 (388)
Q Consensus 181 ~v~I~~i~~p~-~v~~aie~~~~Aeqe~~~~~-~~~~~Aea~aea~~i~AegeAea~~~~aea~~ 243 (388)
.+.|.++.+-+ ..-..+.+....+..+++.+ +...+|+++++++.++|+|+.++.++.++|++
T Consensus 202 GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~ 266 (334)
T PRK11029 202 GIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAER 266 (334)
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 36677776643 34566666666666666554 56889999999999999999999999999875
No 39
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=86.87 E-value=2 Score=40.26 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=45.9
Q ss_pred EEEeecccCCH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhcC
Q psy5087 181 DVSITDLSFGK-DYTAAVEAKQVAQQEAQ-RAVFVVERAKQEKQQKILQAEGEAEAAKKLGLAVGQ 244 (388)
Q Consensus 181 ~v~I~~i~~p~-~v~~aie~~~~Aeqe~~-~~~~~~~~Aea~aea~~i~AegeAea~~~~aea~~~ 244 (388)
.+.|.++.+-+ ..-..+.+...+.+.++ +++.....|++++++.+.+|+|+|++..+.++|+++
T Consensus 161 Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~ 226 (266)
T cd03404 161 GIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKE 226 (266)
T ss_pred CeEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 68888887753 34555666655554443 445667777788888889999999999999988764
No 40
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=86.30 E-value=2 Score=41.57 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhc
Q psy5087 211 VFVVERAKQEKQQKILQAEGEAEAAKKLGLAVG 243 (388)
Q Consensus 211 ~~~~~~Aea~aea~~i~AegeAea~~~~aea~~ 243 (388)
.+...+++++++++.++|++++++.++.++|++
T Consensus 224 ~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a 256 (317)
T TIGR01932 224 IARMHRSQGEEKAEEILGKAEYEVRKILSEAYR 256 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888889999999999999999999875
No 41
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=84.53 E-value=19 Score=31.79 Aligned_cols=51 Identities=10% Similarity=0.230 Sum_probs=42.8
Q ss_pred chHHHHHHHHHhhcCCHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecc
Q psy5087 134 PSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDL 187 (388)
Q Consensus 134 ~~~~~~~lR~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~I~~v~I~~i 187 (388)
.+.+++.+...+++.+.+|+- ..+++.+++++.+|..|.+- .|.+|.+++.
T Consensus 126 ~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL~~G--kV~~VYFTeF 176 (181)
T PRK06654 126 KVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINSILRNG--EIKDIAFTQI 176 (181)
T ss_pred cHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhcCCC--ceEEEEEEEE
Confidence 478899999999999999999 88999999999999988753 4666666554
No 42
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=83.28 E-value=5.8 Score=32.28 Aligned_cols=94 Identities=12% Similarity=0.130 Sum_probs=57.4
Q ss_pred ccCCccEEEEEEEEEEeeCC--CCHHHHHHHhCC-cccccccchHHHHHHHHHhhcCCHHHHHHhHHHH-HHHHH-----
Q psy5087 95 GSKDLQMVNISLRVLARPDA--SKLPKVYQHLGL-DFDEKVLPSICNEVLKSVVAKFNASQLITQRQQV-SLLVK----- 165 (388)
Q Consensus 95 ~tkD~~~v~v~v~v~~r~~~--~d~~~~~~~~g~-~~~~~~l~~~~~~~lR~~~~~~~~~ei~~~R~~i-~~~i~----- 165 (388)
.|+|...+.+.++..|..+. .++.+.-+-+.- |+.. .+-..+.+.+|..+++.+.+++..+-..| .+.|.
T Consensus 12 ET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVG-d~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~~ 90 (118)
T PF11978_consen 12 ETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVG-DACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDEN 90 (118)
T ss_dssp E-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHH-HHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS---
T ss_pred eecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHH-HHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCCC
Confidence 47888778888777777655 344433333332 4443 34567889999999999999998543332 22221
Q ss_pred HHHHH--HHhcCCeEEEEEEeecccC
Q psy5087 166 SQLIE--RAKDFNIILDDVSITDLSF 189 (388)
Q Consensus 166 ~~l~~--~l~~~Gi~I~~v~I~~i~~ 189 (388)
..+++ .+...|+.|.+|-|+.+.+
T Consensus 91 ~~~r~~~~F~~N~LvIt~vDvqsvEp 116 (118)
T PF11978_consen 91 GEVRDGLRFPANNLVITSVDVQSVEP 116 (118)
T ss_dssp E--SS-EEETTTTEEEEEEEEEEEEE
T ss_pred CCccceeEEcCCCeEEEEEeeeEecc
Confidence 11111 2356799999999998876
No 43
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=81.27 E-value=7.2 Score=30.39 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=43.6
Q ss_pred chHHHHHHHHHhhcCCHHHHH--HhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecc
Q psy5087 134 PSICNEVLKSVVAKFNASQLI--TQRQQVSLLVKSQLIERAKDFNIILDDVSITDL 187 (388)
Q Consensus 134 ~~~~~~~lR~~~~~~~~~ei~--~~R~~i~~~i~~~l~~~l~~~Gi~I~~v~I~~i 187 (388)
.+.+++++...+++++.+++- .+++.+.+++.+.+++.+.+- .|.+|.+++.
T Consensus 43 ~~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~--~V~~V~ft~f 96 (99)
T PF03748_consen 43 MPRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKG--KVKDVYFTDF 96 (99)
T ss_pred cHHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccC--cEEEEEEEEE
Confidence 467999999999999999998 489999999999999998542 3777777654
No 44
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=80.85 E-value=37 Score=29.57 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=41.9
Q ss_pred chHHHHHHHHHhhcCCHHHHHH--hHHHHHHHHHHHHHHHHhc-CC-eEEEEEEeecc
Q psy5087 134 PSICNEVLKSVVAKFNASQLIT--QRQQVSLLVKSQLIERAKD-FN-IILDDVSITDL 187 (388)
Q Consensus 134 ~~~~~~~lR~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~-~G-i~I~~v~I~~i 187 (388)
.+.+++.+-..+++.+.+++-+ .++.+.+++.+.++..+.. .| -.|.+|.+++.
T Consensus 110 ~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~f 167 (170)
T PRK05696 110 IPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTGF 167 (170)
T ss_pred hHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeeec
Confidence 4678999999999999999984 7888888888888877754 23 25777777654
No 45
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=80.07 E-value=5.5 Score=37.22 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=30.8
Q ss_pred EEEeecccCCH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhc
Q psy5087 181 DVSITDLSFGK-DYTAAVEAKQVAQQEAQRA-VFVVERAKQEKQQKILQAEGEAEAAKKLGLAVG 243 (388)
Q Consensus 181 ~v~I~~i~~p~-~v~~aie~~~~Aeqe~~~~-~~~~~~Aea~aea~~i~AegeAea~~~~aea~~ 243 (388)
.+.|.++.+-+ ..-+.+.+...+.+.+++. +..+.+|+++++..+.+|+|+|++..+.|+|++
T Consensus 134 GI~V~~v~I~~i~~p~~v~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~ 198 (261)
T TIGR01933 134 GITVTDVNFQSARPPEEVKEAFDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYK 198 (261)
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556665543 2234444444443333322 233444555555555566666665556666553
No 46
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=76.27 E-value=50 Score=28.51 Aligned_cols=54 Identities=19% Similarity=0.189 Sum_probs=44.1
Q ss_pred chHHHHHHHHHhhcCCHHHHHH--hHHHHHHHHHHHHHHHHhcCC--eEEEEEEeecc
Q psy5087 134 PSICNEVLKSVVAKFNASQLIT--QRQQVSLLVKSQLIERAKDFN--IILDDVSITDL 187 (388)
Q Consensus 134 ~~~~~~~lR~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~G--i~I~~v~I~~i 187 (388)
.+.+++.+-..+++.+.+|+.+ +++++.+++.+.++..+..-+ -.|.+|.+++.
T Consensus 102 ~p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f 159 (162)
T PRK07021 102 LPEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF 159 (162)
T ss_pred CHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence 4678899999999999999974 899999999999999886532 35777777654
No 47
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=73.22 E-value=7.3 Score=39.24 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCCeEE--EEEEeecccCCHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q psy5087 163 LVKSQLIERAKDFNIIL--DDVSITDLSFGKD-YTAAVEAKQVAQQ-EAQRAVFVVERAKQEKQQKILQAEGEAEAAKKL 238 (388)
Q Consensus 163 ~i~~~l~~~l~~~Gi~I--~~v~I~~i~~p~~-v~~aie~~~~Aeq-e~~~~~~~~~~Aea~aea~~i~AegeAea~~~~ 238 (388)
+|...+.+.+.+. +.= ..|.|.++.+-+- .-+.+.+...... +.+..++.+.+|+++++..+.+|+|+|+....-
T Consensus 211 ~I~~~i~~~l~e~-l~~y~~GI~V~~V~I~di~pP~eV~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~ 289 (419)
T PRK10930 211 VIRSDTQRELEET-IRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEE 289 (419)
T ss_pred HHHHHHHHHHHHH-HhhcCCCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555541 111 2477788877533 3344443333222 333334555666666666666666666665555
Q ss_pred HhHhc
Q psy5087 239 GLAVG 243 (388)
Q Consensus 239 aea~~ 243 (388)
|+||+
T Consensus 290 AeAyr 294 (419)
T PRK10930 290 ARAYK 294 (419)
T ss_pred HHHHH
Confidence 66665
No 48
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=72.69 E-value=13 Score=31.46 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=43.8
Q ss_pred chHHHHHHHHHhhcCCHHHHHH--hHHHHHHHHHHHHHHHHhcCCeEEEEEEeecc
Q psy5087 134 PSICNEVLKSVVAKFNASQLIT--QRQQVSLLVKSQLIERAKDFNIILDDVSITDL 187 (388)
Q Consensus 134 ~~~~~~~lR~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~Gi~I~~v~I~~i 187 (388)
.+.+++.+-..+++.+.+|+-+ +++++.+++.+.+|..+.+ | .|.+|.+++.
T Consensus 86 ~p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f 139 (142)
T PRK07718 86 DFQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF 139 (142)
T ss_pred ChhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence 4578899999999999999984 7999999999999998876 4 5777777654
No 49
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=72.42 E-value=5.5 Score=37.89 Aligned_cols=16 Identities=38% Similarity=0.546 Sum_probs=10.8
Q ss_pred hcCCCcceeehhHHHH
Q psy5087 242 VGQNPGYLKLRKIRAA 257 (388)
Q Consensus 242 ~~~~p~~~~~r~i~~~ 257 (388)
+.-+|+|++|+.+++.
T Consensus 256 ~~~~~~~~~~~~~~~~ 271 (280)
T cd03406 256 LKLTPEYLELMKYEAI 271 (280)
T ss_pred hcCCHHHHHHHHHHHH
Confidence 3457888887776664
No 50
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=71.28 E-value=12 Score=31.46 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=44.6
Q ss_pred chHHHHHHHHHhhcCCHHHHH--HhHHHHHHHHHHHHHHHHhcC-C-eEEEEEEeecc
Q psy5087 134 PSICNEVLKSVVAKFNASQLI--TQRQQVSLLVKSQLIERAKDF-N-IILDDVSITDL 187 (388)
Q Consensus 134 ~~~~~~~lR~~~~~~~~~ei~--~~R~~i~~~i~~~l~~~l~~~-G-i~I~~v~I~~i 187 (388)
.|.+++.+-..+++.+.+++. .+|+++.+++.+.++..+.+- | -.|.+|.+++.
T Consensus 77 ~P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F 134 (137)
T PRK05697 77 DPLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY 134 (137)
T ss_pred CHHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence 378999999999999999998 489999999999999999642 2 25777777654
No 51
>KOG2962|consensus
Probab=70.05 E-value=15 Score=33.60 Aligned_cols=12 Identities=58% Similarity=1.007 Sum_probs=7.7
Q ss_pred CCcceeehhHHH
Q psy5087 245 NPGYLKLRKIRA 256 (388)
Q Consensus 245 ~p~~~~~r~i~~ 256 (388)
.|+|++++.+++
T Consensus 277 TpEyLeLkk~~A 288 (322)
T KOG2962|consen 277 TPEYLELKKIDA 288 (322)
T ss_pred CHHHHHHHHHHH
Confidence 577777765555
No 52
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=69.92 E-value=24 Score=31.68 Aligned_cols=17 Identities=12% Similarity=0.132 Sum_probs=9.3
Q ss_pred cCHHHHhccceEeeeee
Q psy5087 365 CTPQQLQAGLIQDKESR 381 (388)
Q Consensus 365 Ft~~~i~~~~i~Y~~~~ 381 (388)
||.+.+..-+--|.++|
T Consensus 174 ~T~ea~~~~l~~~L~~~ 190 (198)
T PRK01558 174 FSAEAIADILFSYLNPR 190 (198)
T ss_pred CcHHHHHHHHHHHhcHH
Confidence 66665555555555544
No 53
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.59 E-value=14 Score=38.18 Aligned_cols=35 Identities=23% Similarity=0.135 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhHhcCCC
Q psy5087 212 FVVERAKQEKQQKILQAEGEAEAAKKLGLAVGQNP 246 (388)
Q Consensus 212 ~~~~~Aea~aea~~i~AegeAea~~~~aea~~~~p 246 (388)
.....+++++++.+.+|+++|++.+.+++|+...-
T Consensus 417 a~~a~~~~~Aea~r~kG~AEAea~r~lAEa~~~~~ 451 (548)
T COG2268 417 AQAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLG 451 (548)
T ss_pred HHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHhh
Confidence 33444555667777778888888999999976543
No 54
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=64.71 E-value=36 Score=29.34 Aligned_cols=9 Identities=0% Similarity=-0.031 Sum_probs=3.7
Q ss_pred HHHHHHhHH
Q psy5087 150 ASQLITQRQ 158 (388)
Q Consensus 150 ~~ei~~~R~ 158 (388)
+..++.+|.
T Consensus 29 I~~~LeeR~ 37 (154)
T PRK06568 29 ILNSLDAKI 37 (154)
T ss_pred HHHHHHHHH
Confidence 334444443
No 55
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=62.59 E-value=71 Score=34.25 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=23.0
Q ss_pred HHHHHH-HHhcCCeEEEEE-----EeecccCCHHHHHHHHHHHHH
Q psy5087 165 KSQLIE-RAKDFNIILDDV-----SITDLSFGKDYTAAVEAKQVA 203 (388)
Q Consensus 165 ~~~l~~-~l~~~Gi~I~~v-----~I~~i~~p~~v~~aie~~~~A 203 (388)
-+.+.+ .|.+.||.|+|- .++ ..-|+++....+++..+
T Consensus 520 ~D~iRd~~L~~~Gi~l~D~~~g~~~~~-~~~~~~~~~~~~~~~~~ 563 (651)
T PTZ00399 520 CDKLRDEWLPNLGIRIEDKPDGPSVWK-LDDKEELQREKEEKEAL 563 (651)
T ss_pred HHHHHHHHHHHCCCEEEEcCCCceEEE-ECCHHHHHHHHHHHHHH
Confidence 345555 488899999984 333 33446666665554443
No 56
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=61.81 E-value=25 Score=31.18 Aligned_cols=52 Identities=13% Similarity=0.223 Sum_probs=43.6
Q ss_pred chHHHHHHHHHhhcCCHHHHHH--hHHHHHHHHHHHHHHHHhcCCeEEEEEEeecc
Q psy5087 134 PSICNEVLKSVVAKFNASQLIT--QRQQVSLLVKSQLIERAKDFNIILDDVSITDL 187 (388)
Q Consensus 134 ~~~~~~~lR~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~Gi~I~~v~I~~i 187 (388)
.+.+++++-..+++.+.+|+.+ .++.+.+++.+.+|..+.+- .|.+|.+++.
T Consensus 126 ~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~g--~V~~VyFT~F 179 (182)
T PRK08455 126 DPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLIDG--FIKNVFFTDF 179 (182)
T ss_pred hhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhccC--ceeEEEeEee
Confidence 4678999999999999999984 79999999999999999763 4677766654
No 57
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=59.11 E-value=27 Score=33.02 Aligned_cols=97 Identities=22% Similarity=0.252 Sum_probs=49.8
Q ss_pred HHHHHHHHHHH-HHhcCCeEEEEEEeec-ccCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhHH
Q psy5087 160 VSLLVKSQLIE-RAKDFNIILDDVSITD-LSFGKDYTAAVEAKQVAQQEAQRAV----FVVERAKQEKQQKILQAEGEAE 233 (388)
Q Consensus 160 i~~~i~~~l~~-~l~~~Gi~I~~v~I~~-i~~p~~v~~aie~~~~Aeqe~~~~~----~~~~~Aea~aea~~i~AegeAe 233 (388)
+.+.+.+.++. -..-..+++.++.+.. +. ..+.+.+..++..+.+..+++ ..+..|++++++.++.++|.++
T Consensus 146 i~~~l~~~~~~~Gi~V~~V~i~~i~~p~ev~--~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~ 223 (291)
T COG0330 146 IREILDEAADPWGIKVVDVEIKDIDPPEEVQ--AAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAE 223 (291)
T ss_pred HHHHHHHhhhhcCcEEEEEEEeecCCCHHHH--HHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 33444444444 1334567777776532 22 256555644333332222222 2223466666666666666665
Q ss_pred H----------HHHHHhHhcCCC---cceeehhHHHHH
Q psy5087 234 A----------AKKLGLAVGQNP---GYLKLRKIRAAQ 258 (388)
Q Consensus 234 a----------~~~~aea~~~~p---~~~~~r~i~~~~ 258 (388)
| .+++++++...| .+..+|.+++..
T Consensus 224 a~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 261 (291)
T COG0330 224 AEVIARAEADAAKIIAAALREAPAAPQALAQRYLEELL 261 (291)
T ss_pred HHHHHhhccHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 5 788888877665 444444444443
No 58
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=56.45 E-value=55 Score=28.38 Aligned_cols=17 Identities=0% Similarity=0.034 Sum_probs=8.8
Q ss_pred HHHHHHhHH-HHHHHHHH
Q psy5087 150 ASQLITQRQ-QVSLLVKS 166 (388)
Q Consensus 150 ~~ei~~~R~-~i~~~i~~ 166 (388)
+..++..|. .|.+.+.+
T Consensus 35 i~~~le~R~~~I~~~l~~ 52 (167)
T PRK14475 35 LAGALDAYAAKIQAELDE 52 (167)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666554 44444443
No 59
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=55.27 E-value=59 Score=29.45 Aligned_cols=31 Identities=19% Similarity=0.105 Sum_probs=15.4
Q ss_pred ceEEecCCcccccccCHHHHhccceEeeeee
Q psy5087 351 GAVYFSSNKVAIMRCTPQQLQAGLIQDKESR 381 (388)
Q Consensus 351 G~l~~~~~~~~i~~Ft~~~i~~~~i~Y~~~~ 381 (388)
|.......|.---.||.+.+..-+--|.+.|
T Consensus 169 G~~v~~~dg~~~vd~t~d~i~~~~~~~l~~~ 199 (207)
T PRK01005 169 GAQLKVEEKNWVLDLSSQTLLDLLTRYLQKD 199 (207)
T ss_pred ceEEEecCCeeEEeCcHHHHHHHHHHHhhHH
Confidence 4444443332223477777766655555443
No 60
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=54.15 E-value=64 Score=27.78 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=9.0
Q ss_pred CHHHHHHhHH-HHHHHHHH
Q psy5087 149 NASQLITQRQ-QVSLLVKS 166 (388)
Q Consensus 149 ~~~ei~~~R~-~i~~~i~~ 166 (388)
++..++.+|. .|.+.+.+
T Consensus 32 pi~~~l~~R~~~I~~~l~~ 50 (164)
T PRK14471 32 PILGAVKEREDSIKNALAS 50 (164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566664 44444443
No 61
>PLN03086 PRLI-interacting factor K; Provisional
Probab=53.98 E-value=78 Score=33.19 Aligned_cols=31 Identities=10% Similarity=0.203 Sum_probs=15.4
Q ss_pred HHHHHHhhhhhHHHHHHHHhHhcCCCcceee
Q psy5087 221 KQQKILQAEGEAEAAKKLGLAVGQNPGYLKL 251 (388)
Q Consensus 221 aea~~i~AegeAea~~~~aea~~~~p~~~~~ 251 (388)
+++++-.+++..+|...+.+.+..+-...-.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 79 (567)
T PLN03086 49 RSRRLDAIEAQIKADQQMQESLQAGRGIVFS 79 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 3444444555555555566655444444333
No 62
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=52.67 E-value=65 Score=29.06 Aligned_cols=16 Identities=6% Similarity=0.318 Sum_probs=8.0
Q ss_pred CHHHHHHhHH-HHHHHH
Q psy5087 149 NASQLITQRQ-QVSLLV 164 (388)
Q Consensus 149 ~~~ei~~~R~-~i~~~i 164 (388)
++..++.+|. .|.+.+
T Consensus 72 Pi~~~L~~R~~~I~~~L 88 (205)
T PRK06231 72 PTQRFLNKRKELIEAEI 88 (205)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3555666664 344444
No 63
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=51.58 E-value=20 Score=32.18 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHH-HhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy5087 159 QVSLLVKSQLIER-AKDFNIILDDVSITDLSFGKDYTAAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAA 235 (388)
Q Consensus 159 ~i~~~i~~~l~~~-l~~~Gi~I~~v~I~~i~~p~~v~~aie~~~~Aeqe~~~~~~~~~~Aea~aea~~i~AegeAea~ 235 (388)
.+.+.+...+.+. +.=..+.|.++.+.+ .+-+.+.+.+..++.++.+ +..|++++++.+++|+|++++.
T Consensus 116 ~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~-~~~~ai~~~~~A~~~~~a~-------i~~A~ge~~a~~~~aea~~~~~ 185 (215)
T cd03403 116 ELVEILDEATDPWGVKVERVEIKDIILPQ-EIQEAMAKQAEAEREKRAK-------IIEAEGERQAAILLAEAAKQAA 185 (215)
T ss_pred HHHHHHHHHHhccCeEEEEEEEeeecCCH-HHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHc
Confidence 3444445555432 222357788888765 5556777777666666543 3345666666666666666554
No 64
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=51.40 E-value=76 Score=27.13 Aligned_cols=20 Identities=10% Similarity=-0.132 Sum_probs=9.2
Q ss_pred HHHHHhhhhhHHHHHHHHhH
Q psy5087 222 QQKILQAEGEAEAAKKLGLA 241 (388)
Q Consensus 222 ea~~i~AegeAea~~~~aea 241 (388)
....+.+++++++.++..++
T Consensus 104 ~~~~~~~~A~~ea~~~~~~a 123 (156)
T CHL00118 104 IVENELKQAQKYIDSLLNEA 123 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555554444
No 65
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=48.41 E-value=87 Score=27.28 Aligned_cols=16 Identities=6% Similarity=0.152 Sum_probs=8.3
Q ss_pred CHHHHHHhHH-HHHHHH
Q psy5087 149 NASQLITQRQ-QVSLLV 164 (388)
Q Consensus 149 ~~~ei~~~R~-~i~~~i 164 (388)
++..++.+|. .|...+
T Consensus 42 pi~~~l~~R~~~I~~~l 58 (175)
T PRK14472 42 PILSALEEREKGIQSSI 58 (175)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 4556666665 344443
No 66
>KOG2668|consensus
Probab=46.12 E-value=40 Score=32.82 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=7.0
Q ss_pred ecCceeEEcccc
Q psy5087 64 FAEGLHFRLPWF 75 (388)
Q Consensus 64 ~~pGl~f~~P~~ 75 (388)
...|+-|.+|.+
T Consensus 54 tsegvP~~vtgV 65 (428)
T KOG2668|consen 54 TSEGVPFVVTGV 65 (428)
T ss_pred cccCCceEeeee
Confidence 455666666654
No 67
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=45.45 E-value=1.2e+02 Score=25.87 Aligned_cols=9 Identities=11% Similarity=0.254 Sum_probs=5.0
Q ss_pred HHHHHHhHH
Q psy5087 150 ASQLITQRQ 158 (388)
Q Consensus 150 ~~ei~~~R~ 158 (388)
+..++.+|.
T Consensus 27 i~~~l~~R~ 35 (159)
T PRK09173 27 IARSLDARA 35 (159)
T ss_pred HHHHHHHHH
Confidence 455665554
No 68
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=45.39 E-value=1e+02 Score=26.82 Aligned_cols=17 Identities=6% Similarity=0.264 Sum_probs=8.7
Q ss_pred CHHHHHHhHH-HHHHHHH
Q psy5087 149 NASQLITQRQ-QVSLLVK 165 (388)
Q Consensus 149 ~~~ei~~~R~-~i~~~i~ 165 (388)
++.+++.+|. .|.+.+.
T Consensus 42 pi~~~l~~R~~~I~~~l~ 59 (173)
T PRK13453 42 PLKDVMDKRERDINRDID 59 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4556666664 3444443
No 69
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=45.27 E-value=60 Score=26.41 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=16.2
Q ss_pred HHHHHHHHHH--HHHhhhhhHHHHHHHHhHhcC
Q psy5087 214 VERAKQEKQQ--KILQAEGEAEAAKKLGLAVGQ 244 (388)
Q Consensus 214 ~~~Aea~aea--~~i~AegeAea~~~~aea~~~ 244 (388)
+..|+.+|+. ..=+++-|++..+..++..+.
T Consensus 33 LKqAK~EA~~EI~~yr~~kE~ef~~~ea~~~g~ 65 (113)
T TIGR01147 33 LKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGG 65 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344444433 334566666666666665543
No 70
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=44.17 E-value=55 Score=29.30 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHh
Q psy5087 217 AKQEKQQKILQAEGEAEAAKKLGL 240 (388)
Q Consensus 217 Aea~aea~~i~AegeAea~~~~ae 240 (388)
++|++++..+.++++++|.++..+
T Consensus 29 ~eA~~eAe~Ii~eA~~eAe~i~~k 52 (198)
T PRK01558 29 LEAKEEAEEIIAKAEEEAKELKAK 52 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433
No 71
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=43.50 E-value=1.2e+02 Score=26.08 Aligned_cols=18 Identities=11% Similarity=0.305 Sum_probs=9.1
Q ss_pred CHHHHHHhHH-HHHHHHHH
Q psy5087 149 NASQLITQRQ-QVSLLVKS 166 (388)
Q Consensus 149 ~~~ei~~~R~-~i~~~i~~ 166 (388)
++..++..|. .|.+.+.+
T Consensus 32 pi~~~l~~R~~~I~~~l~~ 50 (164)
T PRK14473 32 PVLNLLNERTRRIEESLRD 50 (164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666665 34444433
No 72
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=43.44 E-value=1.2e+02 Score=26.31 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=7.9
Q ss_pred CHHHHHHhHH-HHHHHH
Q psy5087 149 NASQLITQRQ-QVSLLV 164 (388)
Q Consensus 149 ~~~ei~~~R~-~i~~~i 164 (388)
++.+++.+|. .|.+.+
T Consensus 46 Pi~~~l~~R~~~I~~~l 62 (167)
T PRK08475 46 PLKNFYKSRINKISKRL 62 (167)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3455555654 344443
No 73
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=43.18 E-value=1.2e+02 Score=25.28 Aligned_cols=9 Identities=33% Similarity=0.427 Sum_probs=4.3
Q ss_pred HHHHHHhHH
Q psy5087 150 ASQLITQRQ 158 (388)
Q Consensus 150 ~~ei~~~R~ 158 (388)
+..++.+|.
T Consensus 20 i~~~l~~R~ 28 (147)
T TIGR01144 20 LAKAIETRQ 28 (147)
T ss_pred HHHHHHHHH
Confidence 444555543
No 74
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=42.15 E-value=1.3e+02 Score=25.67 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=9.0
Q ss_pred CHHHHHHhHH-HHHHHHH
Q psy5087 149 NASQLITQRQ-QVSLLVK 165 (388)
Q Consensus 149 ~~~ei~~~R~-~i~~~i~ 165 (388)
++.+++.+|. .|...+.
T Consensus 29 pi~~~l~~R~~~I~~~l~ 46 (159)
T PRK13461 29 KIKAVIDSRQSEIDNKIE 46 (159)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4666666665 3444443
No 75
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=39.37 E-value=1e+02 Score=27.05 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHH
Q psy5087 213 VVERAKQEKQQKILQAEGEAEAAKK 237 (388)
Q Consensus 213 ~~~~Aea~aea~~i~AegeAea~~~ 237 (388)
....++|++++..+.+++++++.+.
T Consensus 30 ~~i~~ea~~~a~~i~~~~~~~a~~e 54 (188)
T PRK02292 30 EEIIAEAEADAEEILEDREAEAERE 54 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555544444444433
No 76
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=39.19 E-value=1.5e+02 Score=26.01 Aligned_cols=22 Identities=23% Similarity=0.057 Sum_probs=15.7
Q ss_pred HHHHHHhhhhhHHHHHHHHhHh
Q psy5087 221 KQQKILQAEGEAEAAKKLGLAV 242 (388)
Q Consensus 221 aea~~i~AegeAea~~~~aea~ 242 (388)
++..+.+|+++|++..+.|++-
T Consensus 171 a~~~~~~a~~ea~~~~~~A~ge 192 (196)
T cd03401 171 AKFVVEKAEQEKQAAVIRAEGE 192 (196)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 3446677888888888877764
No 77
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=38.54 E-value=1.3e+02 Score=27.74 Aligned_cols=19 Identities=5% Similarity=0.086 Sum_probs=10.2
Q ss_pred CHHHHHHhHH-HHHHHHHHH
Q psy5087 149 NASQLITQRQ-QVSLLVKSQ 167 (388)
Q Consensus 149 ~~~ei~~~R~-~i~~~i~~~ 167 (388)
++..++.+|. .|...+.+.
T Consensus 29 Pi~~~l~~R~~~I~~~l~~A 48 (246)
T TIGR03321 29 PILDAMDAREKKIAGELADA 48 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 4556666664 455555443
No 78
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=38.34 E-value=1.7e+02 Score=24.23 Aligned_cols=10 Identities=10% Similarity=0.468 Sum_probs=5.5
Q ss_pred CHHHHHHhHH
Q psy5087 149 NASQLITQRQ 158 (388)
Q Consensus 149 ~~~ei~~~R~ 158 (388)
++.+++.+|.
T Consensus 29 pi~~~l~~R~ 38 (140)
T PRK07353 29 PVGKVVEERE 38 (140)
T ss_pred HHHHHHHHHH
Confidence 3555665554
No 79
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=38.05 E-value=1.5e+02 Score=26.67 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=10.3
Q ss_pred CHHHHHHhHH-HHHHHHHHH
Q psy5087 149 NASQLITQRQ-QVSLLVKSQ 167 (388)
Q Consensus 149 ~~~ei~~~R~-~i~~~i~~~ 167 (388)
++..++.+|. .|.+.+.+.
T Consensus 77 pI~~vLe~R~~~I~~~L~~A 96 (204)
T PRK09174 77 RIGGIIETRRDRIAQDLDQA 96 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 4566676665 455444433
No 80
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=37.82 E-value=1.4e+02 Score=27.77 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=10.1
Q ss_pred CHHHHHHhHH-HHHHHHHHH
Q psy5087 149 NASQLITQRQ-QVSLLVKSQ 167 (388)
Q Consensus 149 ~~~ei~~~R~-~i~~~i~~~ 167 (388)
++.+++.+|. .|.+.+.+.
T Consensus 29 Pi~~~l~eR~~~I~~~l~~A 48 (250)
T PRK14474 29 PIIQVMKKRQQRIANRWQDA 48 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 4556666665 444444433
No 81
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=37.57 E-value=27 Score=23.99 Aligned_cols=28 Identities=21% Similarity=0.018 Sum_probs=13.0
Q ss_pred hHhhhhcccCCCCCchHHHHHHHHHHHH
Q psy5087 5 KLNDFAGRFGKGPKGVGVGLKLAALAGA 32 (388)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (388)
...+++.++.++..++...+++++++++
T Consensus 4 ~~~~~~~~f~~nk~a~~gl~il~~~vl~ 31 (56)
T PF12911_consen 4 PWKDAWRRFRRNKLAVIGLIILLILVLL 31 (56)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 3455666666544444333333333333
No 82
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=37.22 E-value=1.2e+02 Score=30.82 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=8.1
Q ss_pred HHHHHHhHH-HHHHHHH
Q psy5087 150 ASQLITQRQ-QVSLLVK 165 (388)
Q Consensus 150 ~~ei~~~R~-~i~~~i~ 165 (388)
+..++.+|. .|.+.+.
T Consensus 26 i~~~l~~R~~~I~~~L~ 42 (445)
T PRK13428 26 VRRLMAARQDTVRQQLA 42 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 455666664 3444443
No 83
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=37.05 E-value=1.6e+02 Score=25.80 Aligned_cols=17 Identities=6% Similarity=0.206 Sum_probs=9.4
Q ss_pred HHHHHHhHH-HHHHHHHH
Q psy5087 150 ASQLITQRQ-QVSLLVKS 166 (388)
Q Consensus 150 ~~ei~~~R~-~i~~~i~~ 166 (388)
+..++.+|. .|...+.+
T Consensus 52 v~~~L~~R~~~I~~~l~~ 69 (184)
T PRK13455 52 IGGMLDKRAEGIRSELEE 69 (184)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567777665 44444433
No 84
>PF05366 Sarcolipin: Sarcolipin; InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=36.82 E-value=75 Score=18.90 Aligned_cols=28 Identities=4% Similarity=0.089 Sum_probs=18.4
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhhcce
Q psy5087 14 GKGPKGVGVGLKLAALAGAAAYGVSQSM 41 (388)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~s~ 41 (388)
.++.+-.++.+.++++-+++.|++..|+
T Consensus 2 ~~strel~lnftvvlitvilmwllvrsy 29 (31)
T PF05366_consen 2 ERSTRELFLNFTVVLITVILMWLLVRSY 29 (31)
T ss_dssp -S-SSSSHHHHHHHHHHHHHHHHHTTS-
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 3456677777777777777777777664
No 85
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=36.14 E-value=1.6e+02 Score=25.62 Aligned_cols=16 Identities=13% Similarity=0.063 Sum_probs=8.3
Q ss_pred CHHHHHHhHH-HHHHHH
Q psy5087 149 NASQLITQRQ-QVSLLV 164 (388)
Q Consensus 149 ~~~ei~~~R~-~i~~~i 164 (388)
++..++.+|. .|...+
T Consensus 40 pi~~~l~~R~~~I~~~l 56 (173)
T PRK13460 40 VILKALDERASGVQNDI 56 (173)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 4556666664 344433
No 86
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=35.84 E-value=2.3e+02 Score=24.47 Aligned_cols=7 Identities=29% Similarity=0.672 Sum_probs=2.8
Q ss_pred HHHHhHH
Q psy5087 152 QLITQRQ 158 (388)
Q Consensus 152 ei~~~R~ 158 (388)
.++..|.
T Consensus 37 ~iLe~R~ 43 (155)
T PRK06569 37 EIFNNRQ 43 (155)
T ss_pred HHHHHHH
Confidence 3344443
No 87
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=34.22 E-value=2.3e+02 Score=24.33 Aligned_cols=16 Identities=13% Similarity=0.167 Sum_probs=7.2
Q ss_pred CHHHHHHhHH-HHHHHH
Q psy5087 149 NASQLITQRQ-QVSLLV 164 (388)
Q Consensus 149 ~~~ei~~~R~-~i~~~i 164 (388)
++..++.+|. .|.+.+
T Consensus 30 pi~~~l~~R~~~I~~~l 46 (161)
T COG0711 30 PILKALDERQAKIADDL 46 (161)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3444555543 344444
No 88
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=33.96 E-value=1.9e+02 Score=25.38 Aligned_cols=11 Identities=18% Similarity=0.395 Sum_probs=6.4
Q ss_pred CHHHHHHhHHH
Q psy5087 149 NASQLITQRQQ 159 (388)
Q Consensus 149 ~~~ei~~~R~~ 159 (388)
++..++.+|.+
T Consensus 55 PI~~~l~~R~~ 65 (181)
T PRK13454 55 RIGAVLAERQG 65 (181)
T ss_pred HHHHHHHHHHH
Confidence 45566666653
No 89
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=33.08 E-value=1.9e+02 Score=25.10 Aligned_cols=17 Identities=6% Similarity=0.112 Sum_probs=9.0
Q ss_pred CCHHHHHHhHH-HHHHHH
Q psy5087 148 FNASQLITQRQ-QVSLLV 164 (388)
Q Consensus 148 ~~~~ei~~~R~-~i~~~i 164 (388)
-++..++.+|. .|.+.+
T Consensus 42 kpI~~~l~~R~~~I~~~l 59 (174)
T PRK07352 42 GFLGKILEERREAILQAL 59 (174)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 34666776665 344333
No 90
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=32.85 E-value=2e+02 Score=24.27 Aligned_cols=10 Identities=20% Similarity=0.302 Sum_probs=5.2
Q ss_pred CHHHHHHhHH
Q psy5087 149 NASQLITQRQ 158 (388)
Q Consensus 149 ~~~ei~~~R~ 158 (388)
++..++.+|.
T Consensus 28 pi~~~l~~R~ 37 (156)
T PRK05759 28 PIMKALEERQ 37 (156)
T ss_pred HHHHHHHHHH
Confidence 3445555554
No 91
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=32.73 E-value=1.1e+02 Score=26.11 Aligned_cols=9 Identities=0% Similarity=-0.311 Sum_probs=4.3
Q ss_pred EEEEEecCc
Q psy5087 296 VNIIIVPEH 304 (388)
Q Consensus 296 i~i~~~p~~ 304 (388)
++|.++|+.
T Consensus 141 ~~i~~D~~l 149 (166)
T TIGR02499 141 WELEPDASL 149 (166)
T ss_pred eEEeeCCCC
Confidence 445555443
No 92
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=31.12 E-value=2.1e+02 Score=25.11 Aligned_cols=19 Identities=16% Similarity=0.205 Sum_probs=10.8
Q ss_pred CCHHHHHHhHH-HHHHHHHH
Q psy5087 148 FNASQLITQRQ-QVSLLVKS 166 (388)
Q Consensus 148 ~~~~ei~~~R~-~i~~~i~~ 166 (388)
-++..++.+|. .|.+.+.+
T Consensus 47 kPI~~~l~~R~~~I~~~l~~ 66 (184)
T CHL00019 47 GVLSDLLDNRKQTILNTIRN 66 (184)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 56667777665 44444433
No 93
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=30.90 E-value=2.6e+02 Score=24.44 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHh
Q psy5087 217 AKQEKQQKILQAEGEAEAAKKLGL 240 (388)
Q Consensus 217 Aea~aea~~i~AegeAea~~~~ae 240 (388)
++|++++..+.++++++|.++..+
T Consensus 23 ~ea~~~~~~i~~ea~~~a~~i~~~ 46 (188)
T PRK02292 23 AEADEEAEEIIAEAEADAEEILED 46 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 94
>PRK09098 type III secretion system protein HrpB; Validated
Probab=30.45 E-value=2.7e+02 Score=25.66 Aligned_cols=29 Identities=14% Similarity=0.055 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhHh
Q psy5087 214 VERAKQEKQQKILQAEGEAEAAKKLGLAV 242 (388)
Q Consensus 214 ~~~Aea~aea~~i~AegeAea~~~~aea~ 242 (388)
.+.++|++++..+..++..++.+.+.++|
T Consensus 54 ~Il~~A~~~A~~I~~~A~~e~e~~~~~Gy 82 (233)
T PRK09098 54 RIVAEARAQAEAILEAARREADRSARRGY 82 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433433333
No 95
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=30.42 E-value=1.8e+02 Score=27.41 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=4.7
Q ss_pred EEEEEecCcce
Q psy5087 296 VNIIIVPEHIY 306 (388)
Q Consensus 296 i~i~~~p~~~~ 306 (388)
+.|...|+...
T Consensus 208 i~I~V~p~d~~ 218 (281)
T PRK06669 208 ITIRVNPEDYE 218 (281)
T ss_pred EEEEECHHHHH
Confidence 44444444443
No 96
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=30.06 E-value=2.8e+02 Score=23.23 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHhH
Q psy5087 217 AKQEKQQKILQAEGEAEAAKKLGLA 241 (388)
Q Consensus 217 Aea~aea~~i~AegeAea~~~~aea 241 (388)
++|.+++..+.+++.+++.+...++
T Consensus 84 ~~A~~ea~~~~~~A~~~~~~~~~~a 108 (141)
T PRK08476 84 AKAKEEAEKKIEAKKAELESKYEAF 108 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555555444
No 97
>COG4218 MtrF Tetrahydromethanopterin S-methyltransferase, subunit F [Coenzyme metabolism]
Probab=28.98 E-value=51 Score=24.20 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=14.1
Q ss_pred hcccCCCCCchHHHHHHHHHHHHHH
Q psy5087 10 AGRFGKGPKGVGVGLKLAALAGAAA 34 (388)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (388)
+|.+..++.++++|+..+++++...
T Consensus 44 sGl~st~i~GlaiGfvfA~vLv~il 68 (73)
T COG4218 44 SGLNSTRIAGLAIGFVFAGVLVGIL 68 (73)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3444556667777766555544433
No 98
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=26.91 E-value=2.8e+02 Score=22.31 Aligned_cols=18 Identities=33% Similarity=0.350 Sum_probs=7.6
Q ss_pred HHHhhhhhHHHHHHHHhH
Q psy5087 224 KILQAEGEAEAAKKLGLA 241 (388)
Q Consensus 224 ~~i~AegeAea~~~~aea 241 (388)
..+.++++.++.+++.++
T Consensus 83 ~~~~~ea~~~~~~~~~~a 100 (132)
T PF00430_consen 83 EEILAEAEKEAERIIEQA 100 (132)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444444
No 99
>KOG2620|consensus
Probab=26.89 E-value=1.1e+02 Score=28.67 Aligned_cols=123 Identities=19% Similarity=0.147 Sum_probs=64.9
Q ss_pred EEEeeCCCCHHHHHHHhCCcccccccchHHHHHHHHHhhcCCHHHHHHhHHHHHHHHHHHHHHH-HhcCCeEEEEEEeec
Q psy5087 108 VLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIER-AKDFNIILDDVSITD 186 (388)
Q Consensus 108 v~~r~~~~d~~~~~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~~R~~i~~~i~~~l~~~-l~~~Gi~I~~v~I~~ 186 (388)
..|. .+||......+ ...++++.+-...=.-.+++=-+--..|.+++......- .+=.-.+|.|+.. +
T Consensus 88 AsYg--venp~~aI~ql--------aqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~p-p 156 (301)
T KOG2620|consen 88 ASYG--VENPEYAIQQL--------AQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEP-P 156 (301)
T ss_pred cccc--cCCHHHHHHHH--------HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC-C
Confidence 3466 67888666543 456677777665555555555554556666666666542 1123346666653 2
Q ss_pred ccCCHHHH--HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-----------hhhhhHHHHHHHHhHh
Q psy5087 187 LSFGKDYT--AAVEAKQVAQQ---EAQRAVFVVERAKQEKQQKIL-----------QAEGEAEAAKKLGLAV 242 (388)
Q Consensus 187 i~~p~~v~--~aie~~~~Aeq---e~~~~~~~~~~Aea~aea~~i-----------~AegeAea~~~~aea~ 242 (388)
-..-.... .+-++++.|.- |++|. ..+.+||.++++++. .|.|+|+|....+++.
T Consensus 157 ~~V~~AM~~q~~AeR~krAailesEger~-~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~ 227 (301)
T KOG2620|consen 157 PSVKRAMNMQNEAERMKRAAILESEGERI-AQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAV 227 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcc
Confidence 23333333 33344444432 22222 445566666666555 4455556555555554
No 100
>PHA00448 hypothetical protein
Probab=26.78 E-value=2.6e+02 Score=20.42 Aligned_cols=26 Identities=31% Similarity=0.245 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhH
Q psy5087 216 RAKQEKQQKILQAEGEAEAAKKLGLA 241 (388)
Q Consensus 216 ~Aea~aea~~i~AegeAea~~~~aea 241 (388)
.|.+-++..-.-..|-.+|+++-++|
T Consensus 37 lakqs~~l~~aA~~~~~~AAriAakA 62 (70)
T PHA00448 37 LAKQSRELSDAASAGVTEAARIAAKA 62 (70)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 35555555555667777888887776
No 101
>PRK15322 invasion protein OrgB; Provisional
Probab=25.73 E-value=2e+02 Score=25.98 Aligned_cols=31 Identities=10% Similarity=0.155 Sum_probs=20.1
Q ss_pred EEEecCCCcceEEecCCcccccccCHHHHhccc
Q psy5087 342 YRIIRQARHGAVYFSSNKVAIMRCTPQQLQAGL 374 (388)
Q Consensus 342 ~~v~~~P~hG~l~~~~~~~~i~~Ft~~~i~~~~ 374 (388)
|.|+-...-+.|..+ |..|..|+.++...--
T Consensus 140 ~~i~yhd~~rFV~~~--g~qIaEFsPq~~v~~a 170 (210)
T PRK15322 140 FNLKYHQEQRFIMSC--GDQIAEFSPEQFVETA 170 (210)
T ss_pred eEEEEcCCCceEEEe--CCchhccCHHHHHHHH
Confidence 345555555666655 3579999999876543
No 102
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=25.61 E-value=49 Score=30.20 Aligned_cols=13 Identities=8% Similarity=0.194 Sum_probs=5.1
Q ss_pred hHHHHHHHHHHHH
Q psy5087 20 VGVGLKLAALAGA 32 (388)
Q Consensus 20 ~~~~~~~~~~~~~ 32 (388)
++|+++++|++++
T Consensus 18 iaI~IV~lLIiiv 30 (217)
T PF07423_consen 18 IAIGIVSLLIIIV 30 (217)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444333333
No 103
>PF06596 PsbX: Photosystem II reaction centre X protein (PsbX); InterPro: IPR009518 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The low molecular weight transmembrane protein PsbX found in PSII is associated with the oxygen-evolving complex. Its expression is light-regulated. PsbX appears to be involved in the regulation of the amount of PSII [], and may be involved in the binding or turnover of quinone molecules at the Qb (PsbA) site [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016020 membrane; PDB: 3ARC_x 3A0H_X 3A0B_X 3PRR_X 1S5L_x 4FBY_j 3PRQ_X 3KZI_X 3BZ2_X 3BZ1_X.
Probab=25.48 E-value=91 Score=20.23 Aligned_cols=8 Identities=25% Similarity=0.430 Sum_probs=5.8
Q ss_pred Hhhhhccc
Q psy5087 6 LNDFAGRF 13 (388)
Q Consensus 6 ~~~~~~~~ 13 (388)
|++|+..+
T Consensus 5 L~nfl~Sl 12 (39)
T PF06596_consen 5 LSNFLLSL 12 (39)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 67777777
No 104
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=25.46 E-value=3.5e+02 Score=24.44 Aligned_cols=80 Identities=8% Similarity=0.089 Sum_probs=50.5
Q ss_pred cccCCccEEEEEEEEEEeeCCCCHHHHHHHhCCcccccccchHHHHHHHHHhhcCCHHHHHHh--HHHHHHHHHHHHHHH
Q psy5087 94 TGSKDLQMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQ--RQQVSLLVKSQLIER 171 (388)
Q Consensus 94 ~~tkD~~~v~v~v~v~~r~~~~d~~~~~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~~--R~~i~~~i~~~l~~~ 171 (388)
+.|+||..+.+.+.+.-+-+ .. ......|+..+.+.+.+.+++.++++++.. -+.|..+|....+.-
T Consensus 102 vkTkDGy~lRv~~i~~T~~r----------a~-~sq~~~IRk~m~~~i~~~~~~~~~~e~V~~~i~g~i~~eI~~~~k~I 170 (203)
T PRK04057 102 VTTKDGYKVRVKPVALTTKR----------AR-TSQKHAIRKIMEEIIEEKASELTFEEFVQEIVFGKLASEIYKEAKKI 170 (203)
T ss_pred EEcCCCCEEEEEEEEEEchh----------hh-hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccchHHHHHHHhhhhc
Confidence 46899988888755432211 11 123355788888999999999999999963 355666666666554
Q ss_pred HhcCCeEEEEEEe
Q psy5087 172 AKDFNIILDDVSI 184 (388)
Q Consensus 172 l~~~Gi~I~~v~I 184 (388)
.--.-++|.-+.+
T Consensus 171 yPlr~veIrKvkv 183 (203)
T PRK04057 171 YPLRRVEIRKSKV 183 (203)
T ss_pred cCcceEEEEEEEE
Confidence 3223445554444
No 105
>PF09472 MtrF: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); InterPro: IPR013347 Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump []. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016020 membrane
Probab=25.42 E-value=57 Score=23.65 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=16.5
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHh
Q psy5087 13 FGKGPKGVGVGLKLAALAGAAAYGV 37 (388)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l 37 (388)
+..+..|+++|++++++++++.+++
T Consensus 38 ~~~~~~GfaiG~~~AlvLv~ip~~l 62 (64)
T PF09472_consen 38 MATGIKGFAIGFLFALVLVGIPILL 62 (64)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888877777666655443
No 106
>PRK09098 type III secretion system protein HrpB; Validated
Probab=24.96 E-value=1.6e+02 Score=27.14 Aligned_cols=9 Identities=22% Similarity=0.342 Sum_probs=3.6
Q ss_pred EEEEEecCc
Q psy5087 296 VNIIIVPEH 304 (388)
Q Consensus 296 i~i~~~p~~ 304 (388)
+.|..+|+.
T Consensus 182 l~Iv~Dp~L 190 (233)
T PRK09098 182 VEVVGDPRL 190 (233)
T ss_pred eEEEeCCCC
Confidence 334444443
No 107
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=24.41 E-value=4.4e+02 Score=22.34 Aligned_cols=9 Identities=11% Similarity=0.397 Sum_probs=3.9
Q ss_pred HHHHHHhHH
Q psy5087 150 ASQLITQRQ 158 (388)
Q Consensus 150 ~~ei~~~R~ 158 (388)
+..++..|.
T Consensus 47 i~~~l~~R~ 55 (156)
T CHL00118 47 LLKVLDERK 55 (156)
T ss_pred HHHHHHHHH
Confidence 334444443
No 108
>KOG3090|consensus
Probab=24.17 E-value=1.8e+02 Score=26.68 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhH-----------HHHHHHHhHhcCCCc
Q psy5087 212 FVVERAKQEKQQKILQAEGEA-----------EAAKKLGLAVGQNPG 247 (388)
Q Consensus 212 ~~~~~Aea~aea~~i~AegeA-----------ea~~~~aea~~~~p~ 247 (388)
..+.+|+.|+++...-+|+.+ +|++.+++.+++++.
T Consensus 220 ~~ivrAqGEaksAqliGeAi~nn~~fi~Lrki~aAr~IA~tia~S~N 266 (290)
T KOG3090|consen 220 SAIVRAQGEAKSAQLIGEAIKNNPAFITLRKIEAAREIAQTIASSAN 266 (290)
T ss_pred hhhhhhccchHHHHHHHHHHhCCccceeehhHHHHHHHHHHHhcCCC
Confidence 445667888877777777643 566666666654443
No 109
>KOG0742|consensus
Probab=24.13 E-value=7.8e+02 Score=25.14 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHH
Q psy5087 212 FVVERAKQEKQQKILQAEGEAE 233 (388)
Q Consensus 212 ~~~~~Aea~aea~~i~AegeAe 233 (388)
.+.+.||+|++-.+.+|.++||
T Consensus 207 tE~erae~EretiRvkA~Aeae 228 (630)
T KOG0742|consen 207 TEMERAEAERETIRVKAKAEAE 228 (630)
T ss_pred hHHHHHHHHHHHHHHHHHHhhh
Confidence 4555666666555555555554
No 110
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=24.07 E-value=60 Score=27.52 Aligned_cols=35 Identities=20% Similarity=0.056 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHH
Q psy5087 162 LLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAV 197 (388)
Q Consensus 162 ~~i~~~l~~~l~~~Gi~I~~v~I~~i~~p~~v~~ai 197 (388)
-++++.+.+.|++.|++|+|+.-...++|+ +...+
T Consensus 12 ~~lK~~l~~~L~~~g~eV~D~G~~~~dypd-~a~~v 46 (141)
T PRK12613 12 NALKELIKSFLQEEGYDIIDVTDINSDFID-NTLAV 46 (141)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCCCCCChHH-HHHHH
Confidence 467888888999999999999866666665 43333
No 111
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=24.01 E-value=1.9e+02 Score=25.77 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5087 209 RAVFVVERAKQEKQQKIL 226 (388)
Q Consensus 209 ~~~~~~~~Aea~aea~~i 226 (388)
+|+..+..|+.++++.+.
T Consensus 42 qA~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 42 QAEQILQQAEEEAEALLE 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444444
No 112
>KOG3357|consensus
Probab=22.89 E-value=84 Score=25.97 Aligned_cols=61 Identities=18% Similarity=0.331 Sum_probs=39.8
Q ss_pred HHHHHHHhhhccceeeccccCCCcceEEEeecCCc-eE-----------EeeeeEEEEEecCcceeecCCceeeec
Q psy5087 254 IRAAQNIAHTRLHYVQAGGQNQTQDYFLLDVTNGI-LW-----------IRGLQVNIIIVPEHIYLSSGDPVPVDE 317 (388)
Q Consensus 254 i~~~~~i~~~~~~y~~~~~~~~~~d~f~~~~~s~~-~~-----------l~~~~i~i~~~p~~~~l~~~~~~~v~E 317 (388)
++.+++.++++.+|++.-+ +..+|-|.+..+..- ++ -|.|.+.++| |-..|.+.-+ +.++|
T Consensus 29 vqrlkeey~sli~yvqnnk-~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdi-pityp~tape-ialpe 101 (167)
T KOG3357|consen 29 VQRLKEEYQSLIAYVQNNK-SNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDI-PITYPTTAPE-IALPE 101 (167)
T ss_pred HHHHHHHHHHHHHHHHhCc-ccCCcceEeccCccccceehhhhHhhhhhhheeeeeecc-ccccCCCCcc-ccccc
Confidence 5566788999999998653 346788999855443 23 2455566554 5566666665 66665
No 113
>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion]
Probab=22.81 E-value=69 Score=33.52 Aligned_cols=44 Identities=27% Similarity=0.206 Sum_probs=29.3
Q ss_pred hhhHhhhhcccCCCCCchHHHHHHHHHHHHHHHHhhcceEEecCCeEE
Q psy5087 3 QSKLNDFAGRFGKGPKGVGVGLKLAALAGAAAYGVSQSMFTVEGGHRA 50 (388)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~V~~ge~g 50 (388)
..++..||+.+.+..+-..+++++++++++++++++++ .+++..
T Consensus 9 ~~k~~~~~~~~~~~~ki~l~~~~~~~v~~~v~l~l~~~----~p~y~~ 52 (545)
T COG1766 9 LKKLKEFWGKLTKKQKIVLLGAGAALVAVLVALLLWSR----QPKYRT 52 (545)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHheecC----CCceee
Confidence 46788889998777776666666666666656555544 555544
No 114
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=21.67 E-value=37 Score=29.10 Aligned_cols=19 Identities=11% Similarity=0.010 Sum_probs=13.5
Q ss_pred eecCceeeeEecCceeEEcc
Q psy5087 54 SRIGGVQNNVFAEGLHFRLP 73 (388)
Q Consensus 54 ~~fG~~~~~~~~pGl~f~~P 73 (388)
+--||++ ..+.++..-+|+
T Consensus 84 dSdGkvv-tay~~n~~~~~w 102 (154)
T PF04478_consen 84 DSDGKVV-TAYRSNKLTKWW 102 (154)
T ss_pred cCCCcEE-EEEcCchHHHHH
Confidence 5779987 678888655554
No 115
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=21.07 E-value=4.3e+02 Score=20.98 Aligned_cols=17 Identities=12% Similarity=0.065 Sum_probs=12.7
Q ss_pred EeecccCCHHHHHHHHH
Q psy5087 183 SITDLSFGKDYTAAVEA 199 (388)
Q Consensus 183 ~I~~i~~p~~v~~aie~ 199 (388)
......+|+.+.+.+..
T Consensus 53 ~~~~~~lP~~l~~~~~~ 69 (120)
T PF11740_consen 53 SEAAPDLPEALQDALAE 69 (120)
T ss_pred cccccCCChhHHHHHHH
Confidence 45667889999877755
No 116
>KOG2007|consensus
Probab=21.06 E-value=5.8e+02 Score=26.53 Aligned_cols=18 Identities=11% Similarity=0.302 Sum_probs=7.5
Q ss_pred HHHHHHHhhcCCHHHHHH
Q psy5087 138 NEVLKSVVAKFNASQLIT 155 (388)
Q Consensus 138 ~~~lR~~~~~~~~~ei~~ 155 (388)
+..+|+++-.....+++.
T Consensus 477 r~~vRe~a~~~~~~~iL~ 494 (586)
T KOG2007|consen 477 REKVREVAREKKVPEILE 494 (586)
T ss_pred HHHHHHHHHhcchHHHHH
Confidence 444444443333334443
No 117
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=20.38 E-value=53 Score=25.26 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=26.3
Q ss_pred hhhhHhhhhcccCCCCCchHHHHHHHHHHHHHHHHhhcceEEec
Q psy5087 2 AQSKLNDFAGRFGKGPKGVGVGLKLAALAGAAAYGVSQSMFTVE 45 (388)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~V~ 45 (388)
+..||=++.+++...-+-..+.+.+++..++.++.+++|++-+.
T Consensus 11 ~~~~Lr~~c~~Lsp~~R~~vvl~ml~~fa~l~ly~~~~ai~~~G 54 (85)
T PF13150_consen 11 ADDRLRRYCGRLSPKQRLRVVLVMLVLFAALCLYMTVSAIYDIG 54 (85)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567777788855445555555555555555666666665553
No 118
>KOG4753|consensus
Probab=20.16 E-value=2.5e+02 Score=23.01 Aligned_cols=20 Identities=5% Similarity=0.217 Sum_probs=9.7
Q ss_pred HHHhhcceEEecCCeEEEEE
Q psy5087 34 AYGVSQSMFTVEGGHRAIMF 53 (388)
Q Consensus 34 ~~~l~~s~~~V~~ge~gVv~ 53 (388)
.+++......-..+-.||++
T Consensus 68 g~fl~~~~~~ag~~~~gv~f 87 (124)
T KOG4753|consen 68 GFFLAGGRVEAGDRSQGVFF 87 (124)
T ss_pred HHHheecceeeCCCcceEEE
Confidence 33334333333566666654
Done!