Query psy5087
Match_columns 388
No_of_seqs 304 out of 1856
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 16:58:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 99.9 7.2E-27 2.5E-31 208.0 12.3 174 74-265 2-179 (188)
2 4fvg_A Stomatin; mixed alpha-b 99.9 7.2E-23 2.5E-27 171.8 10.0 130 70-203 3-133 (133)
3 1win_A Flotillin 2; BAND 7 dom 99.8 1.9E-19 6.6E-24 152.8 4.9 130 74-204 3-139 (143)
4 2rpb_A Hypothetical membrane p 99.7 4.9E-17 1.7E-21 132.3 4.3 109 80-192 4-113 (113)
5 2zuo_A MVP, major vault protei 98.1 0.00026 8.8E-09 73.5 20.4 150 41-192 459-648 (861)
6 2kk7_A V-type ATP synthase sub 69.6 6.1 0.00021 26.4 4.0 25 217-241 17-41 (52)
7 2b5u_A Colicin E3; high resolu 41.3 99 0.0034 30.3 8.6 33 175-207 278-310 (551)
8 4efa_G V-type proton ATPase su 38.1 73 0.0025 25.0 6.0 18 225-242 50-67 (119)
9 1jdm_A Sarcolipin; helix, memb 36.2 58 0.002 18.7 3.7 28 14-41 2-29 (31)
10 2k6i_A Uncharacterized protein 35.5 64 0.0022 21.7 4.5 19 217-235 33-51 (56)
11 2kk7_A V-type ATP synthase sub 35.5 57 0.0019 21.5 4.3 24 214-237 25-48 (52)
12 4efa_E V-type proton ATPase su 33.4 99 0.0034 26.9 7.0 8 191-198 11-18 (233)
13 3arc_X Photosystem II PSBX pro 32.3 35 0.0012 21.2 2.6 9 5-13 5-13 (39)
14 3bz1_X Photosystem II PSBX pro 25.9 56 0.0019 21.4 2.8 8 6-13 16-23 (50)
15 2k6i_A Uncharacterized protein 25.7 76 0.0026 21.4 3.5 22 220-241 25-46 (56)
16 2gd5_A Charged multivesicular 24.0 2.7E+02 0.0093 23.0 7.8 56 186-241 5-62 (179)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.94 E-value=7.2e-27 Score=208.03 Aligned_cols=174 Identities=22% Similarity=0.348 Sum_probs=146.3
Q ss_pred ccceeEEEEeeeeeeeecc-ccccCCccEEEEEEEEEEeeCCCCHHHHHHHhCCcccccccchHHHHHHHHHhhcCCHHH
Q psy5087 74 WFQYPIIYDIRSRPRKISS-PTGSKDLQMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQ 152 (388)
Q Consensus 74 ~~~~v~~~d~r~~~~~~~~-~~~tkD~~~v~v~v~v~~r~~~~d~~~~~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~e 152 (388)
|++++..+|+|.++++++. .+.|+|+++|++++.++|| +.||..++.+++ ++. ..+.+.+++++|+++|++++++
T Consensus 2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yr--I~dp~~~~~~v~-~~~-~~i~~~~~~~lR~vig~~~l~e 77 (188)
T 3bk6_A 2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFR--VVDPVKAVTQVK-NYI-MATSQISQTTLRSVIGQAHLDE 77 (188)
T ss_dssp CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEE--ESCHHHHHHSSS-CHH-HHHHHHHHHHHHHHHHTSCHHH
T ss_pred ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEE--ECCHHHHHHHhc-CHH-HHHHHHHHHHHHHHHccCCHHH
Confidence 6789999999999999876 4789999999999999999 568998887664 433 4578999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q psy5087 153 LITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEA 232 (388)
Q Consensus 153 i~~~R~~i~~~i~~~l~~~l~~~Gi~I~~v~I~~i~~p~~v~~aie~~~~Aeqe~~~~~~~~~~Aea~aea~~i~AegeA 232 (388)
++++|++|++.+++.+++.+++|||+|.+|.|++++||+++.++|++++. |++++++++++|+|++
T Consensus 78 ll~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~--------------Aere~~A~i~~Aege~ 143 (188)
T 3bk6_A 78 LLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAE--------------AERERRARITLAEAER 143 (188)
T ss_dssp HHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHH--------------HHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999987654 5667778888899999
Q ss_pred HHHHHHHhH---hcCCCcceeehhHHHHHHHhhhcc
Q psy5087 233 EAAKKLGLA---VGQNPGYLKLRKIRAAQNIAHTRL 265 (388)
Q Consensus 233 ea~~~~aea---~~~~p~~~~~r~i~~~~~i~~~~~ 265 (388)
+|+++.++| |+.+|.++++|+++++.+++.+..
T Consensus 144 ~a~~~~a~a~~~~~~~~~~l~lr~le~~~~ia~~~~ 179 (188)
T 3bk6_A 144 QAAEKLREAAEIISEHPMALQLRTLQTISDVAGDKS 179 (188)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHTTC---------
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCC
Confidence 998888877 456899999999999888877653
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.88 E-value=7.2e-23 Score=171.82 Aligned_cols=130 Identities=18% Similarity=0.237 Sum_probs=100.6
Q ss_pred EEccccceeEEEEeeeeeeeeccc-cccCCccEEEEEEEEEEeeCCCCHHHHHHHhCCcccccccchHHHHHHHHHhhcC
Q psy5087 70 FRLPWFQYPIIYDIRSRPRKISSP-TGSKDLQMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKF 148 (388)
Q Consensus 70 f~~P~~~~v~~~d~r~~~~~~~~~-~~tkD~~~v~v~v~v~~r~~~~d~~~~~~~~g~~~~~~~l~~~~~~~lR~~~~~~ 148 (388)
++.||++++.++|+|.++++++.+ +.|+|+..+.+++.++|| +.||.+++.+++ ..+..+...+++++|+++|++
T Consensus 3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yr--I~Dp~~~~~~v~--~~~~~l~~~~~~~lR~vig~~ 78 (133)
T 4fvg_A 3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYR--VQNATLAVANIT--NADSATRLLAQTTLRNALGTK 78 (133)
T ss_dssp -----------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEE--ESCHHHHHHSSS--CHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEE--EeehHHhHhhhh--hHHHHHHHHHHHHHHHHhccc
Confidence 678999999999999999998764 789999999999999999 579999998764 455668899999999999999
Q ss_pred CHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHH
Q psy5087 149 NASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAKQVA 203 (388)
Q Consensus 149 ~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~I~~v~I~~i~~p~~v~~aie~~~~A 203 (388)
++++++++|++|++++++.+++.+++|||+|.+|+|++++||+++.+||+++++|
T Consensus 79 ~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~A 133 (133)
T 4fvg_A 79 NLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA 133 (133)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----------
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999877654
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.76 E-value=1.9e-19 Score=152.76 Aligned_cols=130 Identities=12% Similarity=0.085 Sum_probs=111.7
Q ss_pred ccceeEEEEeeeeeeeeccc-cccCCccEEEEEEEEEEeeCCCCHHHH---HHHh-CC--cccccccchHHHHHHHHHhh
Q psy5087 74 WFQYPIIYDIRSRPRKISSP-TGSKDLQMVNISLRVLARPDASKLPKV---YQHL-GL--DFDEKVLPSICNEVLKSVVA 146 (388)
Q Consensus 74 ~~~~v~~~d~r~~~~~~~~~-~~tkD~~~v~v~v~v~~r~~~~d~~~~---~~~~-g~--~~~~~~l~~~~~~~lR~~~~ 146 (388)
|++++.++|+|.++++++.+ +.|+|++++.+++.++||+. +||..+ ..++ +. +..+.++.+.+++++|+++|
T Consensus 3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~-dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG 81 (143)
T 1win_A 3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIM-TEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILG 81 (143)
T ss_dssp CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEEC-CCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEEC-CCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999999875 69999999999999999963 134433 3333 32 23566788999999999999
Q ss_pred cCCHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHH
Q psy5087 147 KFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAKQVAQ 204 (388)
Q Consensus 147 ~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~I~~v~I~~i~~p~~v~~aie~~~~Ae 204 (388)
+++++|++++|++|++.+++.+++.+++|||+|.+|+|++|++|+++.+||++++.||
T Consensus 82 ~~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae 139 (143)
T 1win_A 82 TLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSG 139 (143)
T ss_dssp HSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999998766554
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.65 E-value=4.9e-17 Score=132.30 Aligned_cols=109 Identities=14% Similarity=0.206 Sum_probs=98.1
Q ss_pred EEEeeeeeeeecc-ccccCCccEEEEEEEEEEeeCCCCHHHHHHHhCCcccccccchHHHHHHHHHhhcCCHHHHHHhHH
Q psy5087 80 IYDIRSRPRKISS-PTGSKDLQMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQ 158 (388)
Q Consensus 80 ~~d~r~~~~~~~~-~~~tkD~~~v~v~v~v~~r~~~~d~~~~~~~~g~~~~~~~l~~~~~~~lR~~~~~~~~~ei~~~R~ 158 (388)
++|+|.++++++. .+.|+|+++|.+++.++|| +.||.+++.+++ + .+..+.+.+++++|+++|++++++++++|+
T Consensus 4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~r--I~dp~~~~~~v~-~-~~~~l~~~~~~~lR~vig~~~l~ei~~~R~ 79 (113)
T 2rpb_A 4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQ--VIDPVKAVYNVS-D-FLMAIVKLAQTNLRAIIGEMELDETLSGRD 79 (113)
T ss_dssp CCCCCCEEEECCCEEEECTTSCEEEECEEEEEE--ESCTTTCTTTTT-H-HHHHHHHHHHHHHHHHHTSCCTTHHHHCHH
T ss_pred EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEE--ECCHHHHHHhcC-C-HHHHHHHHHHHHHHHHHhcCcHHHHHhCHH
Confidence 4688889888876 4789999999999999999 578988887775 3 445699999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHH
Q psy5087 159 QVSLLVKSQLIERAKDFNIILDDVSITDLSFGKD 192 (388)
Q Consensus 159 ~i~~~i~~~l~~~l~~~Gi~I~~v~I~~i~~p~~ 192 (388)
+|++.+++.+++.+++|||+|.+|+|++++||++
T Consensus 80 ~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 80 IINARLREELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHHHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence 9999999999999999999999999999999974
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=98.09 E-value=0.00026 Score=73.49 Aligned_cols=150 Identities=9% Similarity=0.090 Sum_probs=94.3
Q ss_pred eEEecCCeEEEEEeecCceeeeEecCceeEEccccceeEEEEeee------eeee-----e-------ccccccCCccEE
Q psy5087 41 MFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRS------RPRK-----I-------SSPTGSKDLQMV 102 (388)
Q Consensus 41 ~~~V~~ge~gVv~~~fG~~~~~~~~pGl~f~~P~~~~v~~~d~r~------~~~~-----~-------~~~~~tkD~~~v 102 (388)
.|.||.+...-+++.=-+-.+.+++|-+.+.-|- +....++++- ..+. + .+.+.|+|...+
T Consensus 459 ~~rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd-E~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhArL 537 (861)
T 2zuo_A 459 SYRVPHNAAVQVYDYRAKRARVVFGPELVTLDPE-EQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARL 537 (861)
T ss_dssp EEECCTTEEEEEECSSSCCEEEECSSCEEECCSS-CEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCEE
T ss_pred EEEcCCCeEEEEEecCCCceEEEECCcEEEECCC-ccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceEE
Confidence 5789999888787421233357789998777665 3333333321 1111 0 123578999888
Q ss_pred EEEEEEEEeeCC---CCHHHHHHHhCC-cccccccchHHHHHHHHHhhcCCHHHHHHhHHHHH-HHHHH-----------
Q psy5087 103 NISLRVLARPDA---SKLPKVYQHLGL-DFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVS-LLVKS----------- 166 (388)
Q Consensus 103 ~v~v~v~~r~~~---~d~~~~~~~~g~-~~~~~~l~~~~~~~lR~~~~~~~~~ei~~~R~~i~-~~i~~----------- 166 (388)
.+.++..|.++. .|+...-+-+.. |+.. .+-..+.+.+|..+++.+++++..+-..|- ..+.-
T Consensus 538 ~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvG-d~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~~ 616 (861)
T 2zuo_A 538 QLQLAYNWHFELKNRNDPAEAAKLFSVPDFVG-DACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDG 616 (861)
T ss_dssp EEEEEEEEEECCTTTTCHHHHHGGGSSSSHHH-HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC---------
T ss_pred EEEEEEEEEEeccCCCChhhhhhhccCCchHH-HHHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCccccccccc
Confidence 888888888755 455554444443 4443 355678899999999999999986544432 22211
Q ss_pred ----HHHH--HHhcCCeEEEEEEeecccCCHH
Q psy5087 167 ----QLIE--RAKDFNIILDDVSITDLSFGKD 192 (388)
Q Consensus 167 ----~l~~--~l~~~Gi~I~~v~I~~i~~p~~ 192 (388)
..++ .+...|+-|.+|-|+.+.+-++
T Consensus 617 ~~~~~~~~~~~F~~N~lvitsVDvqsvEpvDq 648 (861)
T 2zuo_A 617 TLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQ 648 (861)
T ss_dssp ----CCCSCEECTTTCEEEEEEEEEEEEESSH
T ss_pred ccccCcccceEEccCCeEEEEEeeeeecccCH
Confidence 0011 1456799999999999988754
No 6
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=69.63 E-value=6.1 Score=26.37 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHhH
Q psy5087 217 AKQEKQQKILQAEGEAEAAKKLGLA 241 (388)
Q Consensus 217 Aea~aea~~i~AegeAea~~~~aea 241 (388)
.+|+.++..+.++++++|.+++.+|
T Consensus 17 ~eA~~eA~~Il~eA~~eA~~Ii~eA 41 (52)
T 2kk7_A 17 DDAKAEANKIISEAEAEKAKILEKA 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555444
No 7
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=41.27 E-value=99 Score=30.34 Aligned_cols=33 Identities=18% Similarity=0.017 Sum_probs=27.5
Q ss_pred CCeEEEEEEeecccCCHHHHHHHHHHHHHHHHH
Q psy5087 175 FNIILDDVSITDLSFGKDYTAAVEAKQVAQQEA 207 (388)
Q Consensus 175 ~Gi~I~~v~I~~i~~p~~v~~aie~~~~Aeqe~ 207 (388)
-|++-.-|.+.+|-.|.++.+..|+..+++||.
T Consensus 278 Sg~ePlYISvs~ilt~~elkqrqeee~r~~qew 310 (551)
T 2b5u_A 278 SGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEW 310 (551)
T ss_dssp GCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEeecCCHHHHHHHHHHHHHHHHHh
Confidence 488888999999999999999998877666653
No 8
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=38.09 E-value=73 Score=25.01 Aligned_cols=18 Identities=6% Similarity=-0.079 Sum_probs=7.9
Q ss_pred HHhhhhhHHHHHHHHhHh
Q psy5087 225 ILQAEGEAEAAKKLGLAV 242 (388)
Q Consensus 225 ~i~AegeAea~~~~aea~ 242 (388)
.-+++-|++..+..++..
T Consensus 50 ~yR~qkE~eFk~~e~~~~ 67 (119)
T 4efa_G 50 SYKIQKDKELKEFEQKNA 67 (119)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 334444444444444443
No 9
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=36.20 E-value=58 Score=18.67 Aligned_cols=28 Identities=7% Similarity=0.132 Sum_probs=18.4
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhhcce
Q psy5087 14 GKGPKGVGVGLKLAALAGAAAYGVSQSM 41 (388)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~s~ 41 (388)
.++.+-..+-+.++++-+++++++..|+
T Consensus 2 ~~n~qELf~NFt~vLI~vlLi~llVrsy 29 (31)
T 1jdm_A 2 GINTRELFLNFTIVLITVILMWLLVRSY 29 (31)
T ss_dssp CSCSSSSHHHHHHHHHHHHHHHHHTTSC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666677777777777777766654
No 10
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=35.49 E-value=64 Score=21.72 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhhhhhHHHH
Q psy5087 217 AKQEKQQKILQAEGEAEAA 235 (388)
Q Consensus 217 Aea~aea~~i~AegeAea~ 235 (388)
++|+.++..+.+++.++|-
T Consensus 33 eeA~~ea~~ii~eAreeAk 51 (56)
T 2k6i_A 33 EEAKNRAEQIKAEAIEEAK 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 11
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=35.46 E-value=57 Score=21.49 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHH
Q psy5087 214 VERAKQEKQQKILQAEGEAEAAKK 237 (388)
Q Consensus 214 ~~~Aea~aea~~i~AegeAea~~~ 237 (388)
.+.++|++++..+.++++.+|.++
T Consensus 25 ~Il~eA~~eA~~Ii~eA~~~Ae~~ 48 (52)
T 2kk7_A 25 KIISEAEAEKAKILEKAKEEAEKR 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666666666666543
No 12
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=33.36 E-value=99 Score=26.93 Aligned_cols=8 Identities=0% Similarity=0.148 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q psy5087 191 KDYTAAVE 198 (388)
Q Consensus 191 ~~v~~aie 198 (388)
+++.+.++
T Consensus 11 ~~v~~~i~ 18 (233)
T 4efa_E 11 NQVNDELN 18 (233)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 13
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=32.28 E-value=35 Score=21.19 Aligned_cols=9 Identities=22% Similarity=0.231 Sum_probs=6.2
Q ss_pred hHhhhhccc
Q psy5087 5 KLNDFAGRF 13 (388)
Q Consensus 5 ~~~~~~~~~ 13 (388)
-|++|+..+
T Consensus 5 SL~nFl~Sl 13 (39)
T 3arc_X 5 SLKGFFIGL 13 (39)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 367777777
No 14
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=25.88 E-value=56 Score=21.40 Aligned_cols=8 Identities=25% Similarity=0.256 Sum_probs=5.0
Q ss_pred Hhhhhccc
Q psy5087 6 LNDFAGRF 13 (388)
Q Consensus 6 ~~~~~~~~ 13 (388)
|++|+..+
T Consensus 16 L~NFl~Sl 23 (50)
T 3bz1_X 16 LKGFFIGL 23 (50)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666666
No 15
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=25.71 E-value=76 Score=21.37 Aligned_cols=22 Identities=23% Similarity=0.063 Sum_probs=10.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHhH
Q psy5087 220 EKQQKILQAEGEAEAAKKLGLA 241 (388)
Q Consensus 220 ~aea~~i~AegeAea~~~~aea 241 (388)
+.+|..+-++++.++.+++.+|
T Consensus 25 E~~A~~iVeeA~~ea~~ii~eA 46 (56)
T 2k6i_A 25 EEQAVKEIEEAKNRAEQIKAEA 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555555554
No 16
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=24.03 E-value=2.7e+02 Score=23.03 Aligned_cols=56 Identities=9% Similarity=0.046 Sum_probs=25.0
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhhHHHHHHHHhH
Q psy5087 186 DLSFGKDYTAAVEAKQVAQQEAQRAVFVVERAKQE--KQQKILQAEGEAEAAKKLGLA 241 (388)
Q Consensus 186 ~i~~p~~v~~aie~~~~Aeqe~~~~~~~~~~Aea~--aea~~i~AegeAea~~~~aea 241 (388)
..+|.+.+.+....-..+..+.++....++..+.. .+.+...-+|+.++.+++|.-
T Consensus 5 ~~~p~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~ 62 (179)
T 2gd5_A 5 EKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKE 62 (179)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44666677766655444443333333222222222 222223335666666666654
Done!