RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5087
(388 letters)
>gnl|CDD|239495 cd03401, Band_7_prohibitin, Band_7_prohibitin. A subgroup of the
band 7 domain of flotillin (reggie) like proteins. This
subgroup group includes proteins similar to prohibitin
(a lipid raft-associated integral membrane protein).
Individual proteins of this band 7 domain family may
cluster to form membrane microdomains which may in turn
recruit multiprotein complexes. These microdomains in
addition to being stable scaffolds may also be also
dynamic units with their own regulatory functions.
Prohibitin is a mitochondrial inner-membrane protein
which may act as a chaperone for the stabilization of
mitochondrial proteins. Human prohibitin forms a
heter-oligomeric complex with Bap-37 (prohibitin 2, a
band 7 domain carrying homologue). This complex may
protect non-assembled membrane proteins against
proteolysis by the m-AAA protease. Prohibitin and Bap-37
yeast homologues have been implicated in yeast longevity
and, in the maintenance of mitochondrial morphology.
Length = 196
Score = 360 bits (926), Expect = e-126
Identities = 136/196 (69%), Positives = 172/196 (87%)
Query: 40 SMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISSPTGSKDL 99
S++ V+GGHRA++F+R GGV++ V+ EGLHFR+PWFQ PII+D+R+RPR I S TGSKDL
Sbjct: 1 SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDL 60
Query: 100 QMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQ 159
QMVNI+LRVL RPDAS+LP++YQ+LG D+DE+VLPSI NEVLK+VVA+F A +LITQR++
Sbjct: 61 QMVNITLRVLFRPDASQLPRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREE 120
Query: 160 VSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAKQVAQQEAQRAVFVVERAKQ 219
VS L++ L ERAKDF IILDDVSIT L+F K++T AVEAKQVAQQEA+RA FVVE+A+Q
Sbjct: 121 VSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVEAKQVAQQEAERAKFVVEKAEQ 180
Query: 220 EKQQKILQAEGEAEAA 235
EKQ +++AEGEAEAA
Sbjct: 181 EKQAAVIRAEGEAEAA 196
>gnl|CDD|214581 smart00244, PHB, prohibitin homologues. prohibitin homologues.
Length = 160
Score = 112 bits (282), Expect = 8e-30
Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 6/164 (3%)
Query: 40 SMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKIS-SPTGSKD 98
+ V G + R+G V + GLHF +P+ D+R++ + T +KD
Sbjct: 1 AAIKVVGEGERGVVERLGRVLRVL-GPGLHFLIPFIDDVKKVDLRAQTDDVPPQETITKD 59
Query: 99 LQMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLIT-QR 157
V++ V R L VY+ L D D V+ + L+SV+ K +L+T QR
Sbjct: 60 NVKVSVDAVVYYR-VLDPLRAVYRVL--DADYAVIEQLAQTTLRSVIGKRTLDELLTDQR 116
Query: 158 QQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAKQ 201
+++S ++ +L E A+ + I ++DV I D+ ++ A+EA+Q
Sbjct: 117 EKISENIREELNEAAEAWGIKVEDVEIKDIRLPEEIKEAMEAQQ 160
>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family. This family has
been called SPFH, Band 7 or PHB domain. Recent
phylogenetic analysis has shown this domain to be a
slipin or Stomatin-like integral membrane domain
conserved from protozoa to mammals.
Length = 177
Score = 102 bits (256), Expect = 6e-26
Identities = 49/183 (26%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Query: 42 FTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKIS--SPTGSKDL 99
V G ++ G + V GLHF+LP+ Q + D R + +++ +KD
Sbjct: 1 TIVPPGEVGVVTRF--GKVSRVLGPGLHFKLPFIQTITVVDTRLQTLEVTVDITVLTKDG 58
Query: 100 QMVNISLRVLARPDASKLPKVYQHL-GLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQ 158
VN+ + V R + K+ + G + +++L + L+ V+A++ +L++ R+
Sbjct: 59 VPVNVDVTVQYRVEDP--AKLVANYTGEEDLQELLRPLVRSALREVIARYTLDELLSNRE 116
Query: 159 QVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAKQVAQQEAQRAVFVVERAK 218
+++ VK L E + + + ++DV ITD+ + A+E KQ A+QEA+ A +ERA+
Sbjct: 117 EIAQEVKEALQEELEKYGLEIEDVQITDIDPPPEIAEAIEEKQAAEQEAEEA--EIERAE 174
Query: 219 QEK 221
E
Sbjct: 175 AEA 177
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin
homologs [Posttranslational modification, protein
turnover, chaperones].
Length = 291
Score = 98.3 bits (245), Expect = 3e-23
Identities = 62/235 (26%), Positives = 109/235 (46%), Gaps = 22/235 (9%)
Query: 20 VGVGLKLAALAGAAAYGVSQSMFTVEGGHRAIM--FSRIGGVQNNVFAEGLHFRLPWFQY 77
+ + L + L S S+F V+ G R ++ F R GLHF++P+ +
Sbjct: 1 LLLILIIILLVILIVLLFS-SIFVVKEGERGVVLRFGRYTRTLGE---PGLHFKIPFPEA 56
Query: 78 PIIYDIRSRPRKISSPTG------SKDLQMVNISLRVLARP-DASKLPKVYQHLGLDFDE 130
+R R+ + G +KD +V++ V R D K VY ++ E
Sbjct: 57 IEEVVVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQYRVTDPQKA--VYN---VENAE 111
Query: 131 KVLPSICNEVLKSVVAKFNASQLITQR-QQVSLLVKSQLIERAKDFNIILDDVSITDLSF 189
L + L+SV+ + +L+T+R +++ ++ L E A + I + DV I D+
Sbjct: 112 AALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDP 171
Query: 190 GKDYTAAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLGLAVGQ 244
++ AA+E + A+++ + + A+ E Q IL+AEGEAEAA L A +
Sbjct: 172 PEEVQAAMEKQMAAERDKRAE---ILEAEGEAQAAILRAEGEAEAAIILAEAEAE 223
>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like
proteins. This group contains proteins similar to
stomatin, prohibitin, flotillin, HlfK/C and podicin.
Many of these band 7 domain-containing proteins are
lipid raft-associated. Individual proteins of this band
7 domain family may cluster to form membrane
microdomains which may in turn recruit multiprotein
complexes. Microdomains formed from flotillin proteins
may in addition be dynamic units with their own
regulatory functions. Flotillins have been implicated
in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 121
Score = 86.2 bits (214), Expect = 1e-20
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 79 IIYDIRSRPRKISSPTGSKDLQMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICN 138
I R +KD V + V R +Y + DE+ L +
Sbjct: 1 RIDLRRQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPV-KALYNVRDPE-DEEALRQLAQ 58
Query: 139 EVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVE 198
L+SV+ K +L+ R +++ V+ L E + I + DV I D+ ++ A+E
Sbjct: 59 SALRSVIGKMTLDELLEDRDEIAAEVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAME 118
Query: 199 AKQ 201
+Q
Sbjct: 119 DRQ 121
>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfC (High frequency of
lysogenization C). Although many members of the band 7
family are lipid raft associated, prokaryote plasma
membranes lack cholesterol and are unlikely to have
lipid raft domains. Individual proteins of this band 7
domain family may cluster to form membrane microdomains
which may in turn recruit multiprotein complexes.
Escherichia coli HflC is an integral membrane protein
which may localize to the plasma membrane. HflC
associates with another band 7 family member (HflK) to
form an HflKC complex. HflKC interacts with FtsH in a
large complex termed the FtsH holo-enzyme. FtsH is an
AAA ATP-dependent protease which exerts progressive
proteolysis against membrane-embedded and soluble
substrate proteins. HflKC can modulate the activity of
FtsH. HflKC plays a role in the decision between
lysogenic and lytic cycle growth during lambda phage
infection.
Length = 242
Score = 66.0 bits (162), Expect = 2e-12
Identities = 59/240 (24%), Positives = 108/240 (45%), Gaps = 48/240 (20%)
Query: 41 MFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIR-----SRPRKISSPTG 95
+F V+ G +A++ R G V V GLHF+LP+ Q +D R S P+++ T
Sbjct: 1 LFIVDEGEQAVVL-RFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRV--LTK 57
Query: 96 SKDLQMVN--ISLRVLARPDASKLPKVYQHLGLDFDEKV--LPSICNEVLKSVVAKFNAS 151
K +V+ R+ D + YQ +G + L I N L++ K
Sbjct: 58 DKKRLIVDAYAKWRI---TDPLRF---YQAVGGEERAAETRLDQIVNSALRAEFGKRTLI 111
Query: 152 QLI-TQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAV------EAKQVAQ 204
+L+ +R ++ ++ + E AK+ I + DV I + ++ + +V E +++A
Sbjct: 112 ELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVYRRMRAERERIAA 171
Query: 205 Q-------EAQRAVFVVERAKQEKQQKILQAE-----------GEAEAAKKLGLAVGQNP 246
+ EA+R RA ++++ ++ AE G+AEAA+ A G++P
Sbjct: 172 EFRAEGEEEAERI-----RADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDP 226
>gnl|CDD|239494 cd03400, Band_7_1, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 124
Score = 58.9 bits (143), Expect = 7e-11
Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Query: 79 IIYDIRSRPRKISSPTGSKDLQMVNISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICN 138
Y R + SK+ +N + V R + +K V+ LG D+ K++
Sbjct: 1 GEYSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFR 60
Query: 139 EVLKSVVAKFNASQLI-TQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAV 197
+++ V ++ A Q+ T+R+++ +K +LIE +IL++V + ++ A+
Sbjct: 61 SLVREVTGRYTAEQIYSTKRKEIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAI 120
Query: 198 EAKQ 201
EAK
Sbjct: 121 EAKL 124
>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of
the band 7 domain of flotillin (reggie) like proteins
similar to stomatin and podicin (two lipid
raft-associated integral membrane proteins). Individual
proteins of this band 7 domain family may cluster to
form membrane microdomains which may in turn recruit
multiprotein complexes. Stomatin is widely expressed
and, highly expressed in red blood cells. It localizes
predominantly to the plasma membrane and to
intracellular vesicles of the endocytic pathway, where
it is present in higher order homo-oligomeric complexes
(of between 9 and 12 monomers). Stomatin interacts with
and regulates members of the degenerin/epithelia Na+
channel family in mechanosensory cells of Caenorhabditis
elegans and vertebrate neurons and, is implicated in
trafficking of Glut1 glucose transporters. Prohibitin is
a mitochondrial inner-membrane protein hypothesized to
act as a chaperone for the stabilization of
mitochondrial proteins. Podicin localizes to the plasma
membrane of podocyte foot processes and, is found in
higher order oligomers. Podocin plays a role in
regulating glomerular permeability. Mutations in the
podicin gene give rise to autosomal recessive steroid
resistant nephritic syndrome. This group also contains
proteins similar to three Caenorhabditis elegans
proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the
unc-1 and unc-24 genes result in abnormal motion and
altered patterns of sensitivity to volatile anesthetics.
MEC-2 and UNC-24 proteins interact with MEC-4 which is
part of the degenerin channel complex required for
response to gentle body touch.
Length = 215
Score = 55.2 bits (134), Expect = 6e-09
Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 17/124 (13%)
Query: 141 LKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAK 200
L+SV+ K +L+++R++++ + L E + + ++ V I D+ ++ A+
Sbjct: 94 LRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMA-- 151
Query: 201 QVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLGLAVGQ---NPGYLKLRKIRAA 257
Q EA+R EK+ KI++AEGE +AA L A Q NP L+LR++
Sbjct: 152 --KQAEAER----------EKRAKIIEAEGERQAAILLAEAAKQAAINPAALQLRELETL 199
Query: 258 QNIA 261
+ IA
Sbjct: 200 EEIA 203
>gnl|CDD|233644 TIGR01932, hflC, HflC protein. HflK and HflC are paralogs encoded
by tandem genes in Proteobacteria, spirochetes, and some
other bacterial lineages. The HflKC complex is anchored
in the membrane and exposed to the periplasm. The
complex is not active as a protease, but rather binds to
and appears to modulate the ATP-dependent protease FtsH.
The overall function of HflKC is not fully described
[Protein fate, Degradation of proteins, peptides, and
glycopeptides, Regulatory functions, Protein
interactions].
Length = 317
Score = 53.6 bits (129), Expect = 5e-08
Identities = 56/285 (19%), Positives = 110/285 (38%), Gaps = 69/285 (24%)
Query: 39 QSMFTVEGGHRAIM--FSRIGGVQNN---VFAEGLHFRLPWFQYPIIYDIR-----SRPR 88
Q F ++ G R I+ F +I N+ V+ GLHF++P+ ++ I+D + RP
Sbjct: 18 QPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPD 77
Query: 89 KISSPTGSKDLQMVNISLRVLARPDASKLPKVYQHLGLD---FDEKVLPSICNEVLKSVV 145
+I PT K +++ R K Y G E ++ ++ L+S +
Sbjct: 78 RI--PTKEKKDIIIDTY----IRWRIEDFKKYYLSTGGGTISAAEVLIKRKIDDRLRSEI 131
Query: 146 AKFNASQLITQ-RQQVSLLVKSQLIERA-----------------------------KDF 175
+++ Q+ LV + R KD
Sbjct: 132 GVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITKGREILAREISQIANSQLKDI 191
Query: 176 NIILDDVSITDLSFGKDYTAAV------EAKQVAQQ-----EAQRAVFVVER-------- 216
I + DV I +++ + + ++ E +Q+A+ E + + +
Sbjct: 192 GIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKIL 251
Query: 217 AKQEKQQKILQAEGEAEAAKKLGLAVGQNPGYLK-LRKIRAAQNI 260
++ + +I++ EG+AEAAK A G++P + R + A +
Sbjct: 252 SEAYRTARIIKGEGDAEAAKIYSDAYGKDPEFYSFWRSLEAYEKS 296
>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 262
Score = 47.7 bits (114), Expect = 4e-06
Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 10/172 (5%)
Query: 66 EGLHFRLPWFQYPIIYDIRSRPRKISS--PTGSKDLQMVNISLRVLARPDASKLPKVYQH 123
G HF +P + + + R +++ T +KD V + ++ R +
Sbjct: 19 PGCHFVIPLVET-VAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYK 77
Query: 124 LGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVS 183
LG E+ + S +VL++ + K +L Q+ +++ V+ +L E + +
Sbjct: 78 LG--NPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATL 135
Query: 184 ITDLSFGKDYTAAVEAKQVAQQEAQR-AVFVVERAKQEKQQKILQAEGEAEA 234
ITD+ D A V+ AQR V V +A+ EK + I AE +AEA
Sbjct: 136 ITDI----DPDAEVKRAMNEINAAQRQRVAAVHKAEAEKIKDIKAAEADAEA 183
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 46.4 bits (110), Expect = 2e-05
Identities = 38/218 (17%), Positives = 81/218 (37%), Gaps = 22/218 (10%)
Query: 55 RIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISSPTG-SKDLQMVNISLRVLAR-- 111
G V G +P FQ + + ++ +KD +N+ +A
Sbjct: 55 DEAGGGQKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLNV--EAVAYVK 112
Query: 112 --PDASKLPKVYQHLGLDFDEKVLPSICNEV----LKSVVAKFNASQLITQRQQVSLLVK 165
+ + G + L + + L++V+A+ +L R + +V+
Sbjct: 113 IGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQ 172
Query: 166 SQLIERAKDFNIILDDVSITDLS-------FGKDYTAAVEAKQVAQQEAQRAVFVVERAK 218
+ + ++LD ++I D++ +Y A+ +++A Q Q A A+
Sbjct: 173 EVVGDDLSKMGLVLDSLAINDINDTSKENQDPNNYLDALGRRRIA-QVLQDAEIAENEAE 231
Query: 219 QEKQQKILQAEGEAEAAKKLGLAVGQNPGYLKLRKIRA 256
+E + I +A +A+ + L V Q P + R
Sbjct: 232 KETEIAIAEANRDAKLVE---LEVEQQPAGKTAEQTRE 266
Score = 32.1 bits (73), Expect = 0.55
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 195 AAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLGLA 241
A V A + A+QE E AK E + + + + EAEA ++ G A
Sbjct: 389 ALVAAAEAAEQEQVEIAVRAEAAKAEAEAQAAEIKAEAEAIREKGKA 435
>gnl|CDD|239498 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfK (High frequency of
lysogenization K). Although many members of the band 7
family are lipid raft associated, prokaryote plasma
membranes lack cholesterol and are unlikely to have
lipid raft domains. Individual proteins of this band 7
domain family may cluster to form membrane microdomains
which may in turn recruit multiprotein complexes.
Escherichia coli HflK is an integral membrane protein
which may localize to the plasma membrane. HflK
associates with another band 7 family member (HflC) to
form an HflKC complex. HflKC interacts with FtsH in a
large complex termed the FtsH holo-enzyme. FtsH is an
AAA ATP-dependent protease which exerts progressive
proteolysis against membrane-embedded and soluble
substrate proteins. HflKC can modulate the activity of
FtsH. HflKC plays a role in the decision between
lysogenic and lytic cycle growth during lambda phage
infection.
Length = 266
Score = 42.9 bits (102), Expect = 1e-04
Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 32/234 (13%)
Query: 26 LAALAGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPW---------FQ 76
L A + +S + V+ G R ++ R G V GLH++LP+
Sbjct: 1 LIAALLVILWLLS-GFYIVQPGERGVV-LRFGKYSRTVEP-GLHWKLPYPIEVVEVVPVF 57
Query: 77 YPIIYDIRSRPRKISSPTGSK-----DLQMVNISLRVLARPDASKLPKVYQHLGLDFDEK 131
I R + S G D +V++ V R P Y + E
Sbjct: 58 QLRSVGIPVRVGSVRSVPGESLMLTGDENIVDVEFAVQYR---ISDPYDYL-FNVRDPEG 113
Query: 132 VLPSICNEVLKSVVAKFNASQLIT-QRQQVSLLVKSQLIERAKDFN--IILDDVSITDLS 188
L ++ VV + ++T R++++ V+ L + I + V++ D
Sbjct: 114 TLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDAD 173
Query: 189 FGKDYTAAVEAKQVAQQEAQRAVF--------VVERAKQEKQQKILQAEGEAEA 234
++ A + A+Q+ +R + VV +A+ E + I +AE E
Sbjct: 174 PPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEE 227
>gnl|CDD|182913 PRK11029, PRK11029, FtsH protease regulator HflC; Provisional.
Length = 334
Score = 38.6 bits (90), Expect = 0.004
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 204 QQEAQR----AVFVVER--AKQEKQQKILQAEGEAEAAKKLGLAVGQNPG-YLKLRKIRA 256
Q+EA++ A + V R A+ E+Q +I++ EG+AEAAK A Q+P Y +R +RA
Sbjct: 243 QEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQDPDFYAFIRSLRA 302
Query: 257 AQN 259
+N
Sbjct: 303 YEN 305
Score = 32.4 bits (74), Expect = 0.38
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 40 SMFTVEGGHRAIMFSRIGGVQNN------VFAEGLHFRLPWFQYPIIYDIR 84
S+F V+ G R I+ R G V + V+A GLHF++P+ + + D R
Sbjct: 19 SVFVVKEGERGIVL-RFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDAR 68
>gnl|CDD|130988 TIGR01933, hflK, HflK protein. HflK and HflC are paralogs encoded
by tandem genes in Proteobacteria, spirochetes, and some
other bacterial lineages. The HflKC complex is anchored
in the membrane and exposed to the periplasm. The
complex is not active as a protease, but rather binds to
and appears to modulate the ATP-dependent protease FtsH.
The overall function of HflKC is not fully
described.//Regulation of FtsH by HflKC appears to be
negative (PMID:8947034,PMID:96367) [SS 8/27/03].
Length = 261
Score = 37.0 bits (86), Expect = 0.009
Identities = 43/219 (19%), Positives = 86/219 (39%), Gaps = 35/219 (15%)
Query: 61 NNVFAEGLHFRLPWFQ--YPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLARPDASKLP 118
+ GL+++ P+ + YP+ RK + D +VN+ + V R P
Sbjct: 19 HRTVDPGLNWKPPFIEEVYPVNVTAVRNLRK-QGLMLTGDENIVNVEMNVQYRITD---P 74
Query: 119 KVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQ-RQQVSLLVKSQLIERAKDFNI 177
Y ++ E L + L+ V+ ++T+ R Q+ K +L E ++++
Sbjct: 75 YKYL-FSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDL 133
Query: 178 ILDDVSITDLSFG------------KDYTAAVEAKQVAQQEAQ------------RAVFV 213
+ +TD++F D A E ++ EA+ A +
Sbjct: 134 GIT---VTDVNFQSARPPEEVKEAFDDVIIAREDEERYINEAEAYANEVVPKARGDAQRI 190
Query: 214 VERAKQEKQQKILQAEGEAEAAKKLGLAVGQNPGYLKLR 252
+E A+ K+++I +A+G+ KL + P + R
Sbjct: 191 IEEARGYKERRINRAKGDVARFTKLLAEYKKAPDVTRER 229
>gnl|CDD|224236 COG1317, FliH, Flagellar biosynthesis/type III secretory pathway
protein [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 234
Score = 35.5 bits (82), Expect = 0.026
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 3/97 (3%)
Query: 175 FNIILDDVSITDLSFGKDYTAAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEA-E 233
I D++ + E + EA+ +E A QE Q+ I + E E
Sbjct: 16 QVIEFKDLANAGPKVAPEKAVLEEEELEQALEAKEEE--LESAAQELQEGIEEGAREGYE 73
Query: 234 AAKKLGLAVGQNPGYLKLRKIRAAQNIAHTRLHYVQA 270
+LG G G + R + + ++A
Sbjct: 74 EGFQLGYEEGFEEGQEEGRVLERLAKLIAEFQAELEA 110
>gnl|CDD|146016 pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subunit. This family
represents the eukaryotic vacuolar (H+)-ATPase
(V-ATPase) G subunit. V-ATPases generate an acidic
environment in several intracellular compartments.
Correspondingly, they are found as membrane-attached
proteins in several organelles. They are also found in
the plasma membranes of some specialised cells.
V-ATPases consist of peripheral (V1) and membrane
integral (V0) heteromultimeric complexes. The G subunit
is part of the V1 subunit, but is also thought to be
strongly attached to the V0 complex. It may be involved
in the coupling of ATP degradation to H+ translocation.
Length = 105
Score = 32.2 bits (74), Expect = 0.12
Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 203 AQQEAQRAVFVVERAKQEKQQKILQAEGEAEA 234
A++EA +V A++ + +++ QA+ EAE
Sbjct: 12 AEKEAAE---IVNEARKRRAKRLKQAKEEAEK 40
>gnl|CDD|151656 pfam11214, Med2, Mediator complex subunit 2. This family of
mediator complex subunit 2 proteins is conserved in
fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts
with and phosphorylates Med2. Post-translational
modifications of Mediator subunits are important for
regulation of gene expression.
Length = 99
Score = 29.3 bits (66), Expect = 0.86
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 16/94 (17%)
Query: 138 NEVLKSVVAKFNASQLITQRQQVSLL------VKSQLIERAKDFNIILDDVSITDLSFGK 191
+++LK F QL + Q +++ ++ L E+ F+ ILDD + L+ K
Sbjct: 14 DDILKVSGYIFVQQQLKNNQLQSNVITGFNNQLQKSLGEKITKFHSILDDT-ESKLNDTK 72
Query: 192 DYT-AAVEAKQVAQQEAQRAVFVVERAKQEKQQK 224
Y VE K+ ++E ER K+E+++K
Sbjct: 73 WYVDTLVENKKKQEEE--------ERKKKEEEEK 98
>gnl|CDD|106978 PHA00670, PHA00670, hypothetical protein.
Length = 540
Score = 31.4 bits (71), Expect = 0.98
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 190 GKDYTAAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLG 239
G T V +QV QRA +Q+ Q+ AE A AAK LG
Sbjct: 487 GVPPTLIVPKEQVQSIRKQRA------QQQQAAQQAAIAEAAANAAKALG 530
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 31.4 bits (71), Expect = 1.2
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 182 VSITD-LSFGKDYTAAVEAKQVAQ 204
V I D L+ G DYTA VEA + AQ
Sbjct: 1180 VRIIDILNTGNDYTAEVEALETAQ 1203
>gnl|CDD|115108 pfam06431, Polyoma_lg_T_C, Polyomavirus large T antigen C-terminus.
Length = 417
Score = 30.3 bits (68), Expect = 1.9
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 13/70 (18%)
Query: 129 DEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLS 188
D K SIC + + +V+AK L R+++ L ER FN +LD + DL
Sbjct: 65 DSKNQKSICQQAVDTVLAKKRVDSLHMTREEM-------LTER---FNDLLDKM---DLI 111
Query: 189 FGKDYTAAVE 198
FG A +E
Sbjct: 112 FGAHGNAVLE 121
>gnl|CDD|219442 pfam07514, TraI_2, Putative helicase. Some members of this family
have been annotated as helicases.
Length = 326
Score = 30.0 bits (68), Expect = 2.0
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 325 PSLLPLLSPYYANRVTEYRIIRQARHGAVYFSSNKVAIM---RCTPQQLQAGLIQDKE 379
P L PL Y I + RHG Y ++ + R P ++ L + E
Sbjct: 135 PWLGPLHQWARFRGAERYFIRWKPRHGRDYALHGALSSLLLNRILPPEVLDWLSGNPE 192
>gnl|CDD|179204 PRK01005, PRK01005, V-type ATP synthase subunit E; Provisional.
Length = 207
Score = 29.4 bits (66), Expect = 2.2
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 195 AAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLG 239
A EA + ++A ++ A++E ++ I AE A+ K G
Sbjct: 25 AEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQG 69
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 29.9 bits (67), Expect = 2.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 191 KDYTAAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLGLA 241
AA EAK+ A++ A+ A E AK + + + + EAEA A
Sbjct: 161 AKLKAAAEAKKKAEEAAKAA----EEAKAKAEAAAAKKKAEAEAKAAAEKA 207
Score = 28.0 bits (62), Expect = 9.1
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 198 EAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKK 237
E +++ QE Q+ E+ Q +Q++ + +A A +K
Sbjct: 107 EKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQK 146
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 29.4 bits (66), Expect = 3.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 195 AAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKK 237
AA EAK+ A+ EA++ + K + K A+ AEA
Sbjct: 195 AAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAA 237
>gnl|CDD|178094 PLN02476, PLN02476, O-methyltransferase.
Length = 278
Score = 29.3 bits (65), Expect = 3.1
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 308 SSGDPVPV---DEGGNITLLPSLLPLLSPYYANRVTEYRIIRQARHGAVYFSSNKVAIMR 364
+ DPV V D+ GN ++ SL P L Y + V E +I+RQ R ++ M+
Sbjct: 46 APADPVVVANDDKYGNKQVI-SLTPRLYDYVLSNVREPKILRQLREETSKMRGSQ---MQ 101
Query: 365 CTPQQLQ--AGLIQ 376
+P Q Q A L+Q
Sbjct: 102 VSPDQAQLLAMLVQ 115
>gnl|CDD|110233 pfam01216, Calsequestrin, Calsequestrin.
Length = 350
Score = 29.5 bits (66), Expect = 3.1
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 193 YTAAVEAKQVAQQEAQRAVFVVERAKQEKQQK-----ILQAEGEAEAAKKLGL 240
Y V + +Q++ + ++E A Q + K ++ +E +A AKKLGL
Sbjct: 35 YHEPVSDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGL 87
>gnl|CDD|224505 COG1589, FtsQ, Cell division septal protein [Cell envelope
biogenesis, outer membrane].
Length = 269
Score = 28.5 bits (64), Expect = 5.1
Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 23/156 (14%)
Query: 198 EAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLGLAVG-----QNPGYLKLR 252
+ ++V + E R + K K+ I G L L V + Y +R
Sbjct: 5 QLRRVVRIEE-REAKIPTLNKTRKRGVIRLLIGLYLVLLLLVLVVLWVLILLSLPYFPIR 63
Query: 253 KIRAAQNIAHTRLHYVQAGGQNQTQDYFLLDVTN------GILWIRGLQVN-------II 299
K+ + N + ++A G + + LD+ + W++ +V I
Sbjct: 64 KVSVSGNNQVSEEDILKALGLDGGTSFLTLDLNAIRENIEKLPWVKSAEVRRQFPNTLEI 123
Query: 300 IVPEH----IYLSSGDPVPVDEGGNITLLPSLLPLL 331
V E + + D +DE GN+ ++PS P L
Sbjct: 124 EVVEREPIAYWQRNDDYHLIDENGNLFIVPSDRPKL 159
>gnl|CDD|151031 pfam10458, Val_tRNA-synt_C, Valyl tRNA synthetase tRNA binding arm.
This domain is found at the C-terminus of Valyl tRNA
synthetases.
Length = 66
Score = 26.5 bits (59), Expect = 5.5
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 215 ERAKQEKQQKILQAEGEAEAAKKLGLAVGQNPGYL 249
ERA+ EK+ LQ E E KKL NPG++
Sbjct: 5 ERARLEKELAKLQKEIER-LQKKLS-----NPGFV 33
>gnl|CDD|211789 TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC,
alkylhydroperoxide reductase subunit C) is one subunit
of a two-subunit complex with subunit F(TIGR03140).
Usually these are found as an apparent operon. The gene
has been characterized in Bacteroides fragilis where it
is important in oxidative stress defense. This gene
contains two invariant cysteine residues, one near the
N-terminus and one near the C-terminus, each followed
immediately by a proline residue [Cellular processes,
Detoxification, Cellular processes, Adaptations to
atypical conditions].
Length = 187
Score = 28.1 bits (63), Expect = 6.2
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 13/55 (23%)
Query: 207 AQRAVFVVERAKQEKQQKILQAEGEAEAAKKLGLAVGQNPGYLKLRKIRAAQNIA 261
A R FV++ EG +A + +G++ L LRKI+AAQ +A
Sbjct: 118 ADRGTFVID------------PEGVIQAVEIHDNGIGRDASEL-LRKIKAAQYVA 159
>gnl|CDD|172948 PRK14473, PRK14473, F0F1 ATP synthase subunit B; Provisional.
Length = 164
Score = 28.0 bits (62), Expect = 6.8
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 191 KDYTAAVEAKQVAQQEAQRAVFVV-ERAKQEKQQKILQAEGEAEAAKKLGLA 241
+DY A + A+QEA + V ERA+ ++ + I QA EAE K+ A
Sbjct: 63 RDYEAEL---AKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARA 111
>gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This
model represents the AAA family ATPase, EccA, of the
actinobacterial flavor of type VII secretion systems.
Species such as Mycobacterium tuberculosis have several
instances of this system per genome, designated EccA1,
EccA2, etc [Protein fate, Protein and peptide secretion
and trafficking].
Length = 557
Score = 28.7 bits (64), Expect = 7.0
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 203 AQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLGLA-----VGQNPGYLKLRKIRAA 257
RA FV A + K + L AE EAE A+++GL V + RA
Sbjct: 246 PSSAPSRAEFVDPAAAERKAK--LLAEAEAELAEQIGLERVKRQVAALKSSTAMALARAE 303
Query: 258 QN--IAHTRLHYVQAG 271
+ +A T H + AG
Sbjct: 304 RGLPVAQTSNHMLFAG 319
>gnl|CDD|239363 cd03065, PDI_b_Calsequestrin_N, PDIb family, Calsequestrin
subfamily, N-terminal TRX-fold domain; Calsequestrin is
the major calcium storage protein in the sarcoplasmic
reticulum (SR) of skeletal and cardiac muscle. It stores
calcium ions in sufficient quantities (up to 20 mM) to
allow repetitive contractions and is essential to
maintain movement, respiration and heart beat. A
missense mutation in human cardiac calsequestrin is
associated with catecholamine-induced polymorphic
ventricular tachycardia (CPVT), a rare disease
characterized by seizures or sudden death in response to
physiologic or emotional stress. Calsequestrin is a
highly acidic protein with up to 50 calcium binding
sites formed simply by the clustering of two or more
acidic residues. The monomer contains three redox
inactive TRX-fold domains. Calsequestrin is condensed as
a linear polymer in the SR lumen and is
membrane-anchored through binding with intra-membrane
proteins triadin, junctin and ryanodine receptor (RyR)
Ca2+ release channel. In addition to its role as a
calcium ion buffer, calsequestrin also regulates the
activity of the RyR channel, coordinating the release of
calcium ions from the SR with the loading of the calcium
store. The N-terminal TRX-fold domain (or domain I)
mediates front-to-front dimer interaction, an important
feature in the formation of calsequestrin polymers.
Length = 120
Score = 27.0 bits (60), Expect = 7.9
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 193 YTAAVEAKQVAQQEAQRAVFVVERAKQEKQQK-----ILQAEGEAEAAKKLGL 240
Y VE+ + AQ++ Q V+E A Q + K ++ ++ +A+ AKKLGL
Sbjct: 33 YHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL 85
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 28.0 bits (63), Expect = 8.9
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 13/58 (22%)
Query: 179 LDDVS--ITDLSFGK------DYTAAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQA 228
LD+V+ I +L GK +Y++ +E K ++ KQ+K+ Q
Sbjct: 213 LDNVATHILELDRGKLTPYKGNYSSYLEQKAERLRQEAA-----AYEKQQKELAKEQE 265
>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid
dehydrogenase, catalytic domain. This family represents
the largest portion of the catalytic domain of
2-hydroxyacid dehydrogenases as the NAD binding domain
is inserted within the structural domain.
Length = 312
Score = 28.0 bits (63), Expect = 9.1
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 23/73 (31%)
Query: 233 EAAKKLGLAVGQNPGYLK--------------LRKIRAAQNIAHTRLHYVQAGG--QNQT 276
+AA + G+ V PGY R+I A V+AG +
Sbjct: 77 DAATERGILVTNVPGYSTESVAELTVGLILALARRIPEADA-------SVRAGDWKKGGP 129
Query: 277 QDYFLLDVTNGIL 289
L T G++
Sbjct: 130 IGLELYGKTLGVI 142
>gnl|CDD|218559 pfam05335, DUF745, Protein of unknown function (DUF745). This
family consists of several uncharacterized Drosophila
melanogaster proteins of unknown function.
Length = 188
Score = 27.7 bits (62), Expect = 9.5
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 15/89 (16%)
Query: 149 NASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAKQVAQQEAQ 208
N +Q + + KSQL ++A L K AA+ KQ ++ +
Sbjct: 29 NDAQ-AAAAEAAAYQAKSQLADKA--------------LQAAKAAEAALAGKQQLVEQLE 73
Query: 209 RAVFVVERAKQEKQQKILQAEGEAEAAKK 237
+ V E +E+ Q + Q+E A AA+
Sbjct: 74 QEVREAEAVVEEESQSLQQSEANATAAQA 102
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.387
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,886,291
Number of extensions: 1972271
Number of successful extensions: 2341
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2281
Number of HSP's successfully gapped: 94
Length of query: 388
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 289
Effective length of database: 6,546,556
Effective search space: 1891954684
Effective search space used: 1891954684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)