RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5087
(388 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 2e-06
Identities = 59/404 (14%), Positives = 110/404 (27%), Gaps = 135/404 (33%)
Query: 28 ALAGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIYDIRSRP 87
AL A G +Q + + GG G ++ F E R +Y
Sbjct: 144 ALFRAVGEGNAQ-LVAIFGGQ---------GNTDDYFEE---LR-------DLYQT---- 179
Query: 88 RKISSPTGSKDL-QMVNISLRVLARPDASKLPKVYQHLGLDF-----DEKVLPSICNEVL 141
DL + +L L R KV+ GL+ + P + L
Sbjct: 180 ----YHVLVGDLIKFSAETLSELIR-TTLDAEKVFTQ-GLNILEWLENPSNTPD--KDYL 231
Query: 142 KSVVAKFNASQLITQRQQVSLLVKS------QLIERAKDFNIILDDV--------SITDL 187
S+ + Q + K +L K + + +
Sbjct: 232 LSIPISCPLIGV-IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 188 SFGKDYTAAVEAKQV-------AQQEAQRAV--------------------FVVERAKQE 220
SF + + +A V + + QE
Sbjct: 291 SF---FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 221 K-QQKILQAEGEAEAAKKLGLAV----------GQNPGYL-----KLRKIRAAQNIAHTR 264
+ Q + + A K++ +++ G P L LRK +A + +R
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG-PPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 265 LHYVQ--AGGQNQTQDYFLLDVTNGILWIRGLQVNIIIVPEH-IYL-SSGDPVPVD-EGG 319
+ + + N+ FL + P H L + D + D
Sbjct: 407 IPFSERKLKFSNR----FL----------------PVASPFHSHLLVPASDLINKDLVKN 446
Query: 320 NITLLPSLL--PLLSPY-------YANRVTEYRIIRQARHGAVY 354
N++ + P+ + + ++E RI+ V
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGSISE-RIVDCIIRLPVK 489
Score = 48.9 bits (116), Expect = 2e-06
Identities = 54/291 (18%), Positives = 87/291 (29%), Gaps = 115/291 (39%)
Query: 159 QVSLLVKSQL---IERAKD-FNIILDDVSITDLSFGKDY--TAAVE---------AKQVA 203
+ LLV + + ++ FN IL + T+ F D T E + V
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNKILPEP--TE-GFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 204 QQEAQRAVFVVERAKQEKQQKILQ------------AEGEAEAAKKLGLAVGQNPGYLKL 251
+ + V+ E + L+ E + K L +N Y+
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI--KN--YITA 129
Query: 252 RKI--------------RAAQNIAHTRLHYVQAGGQNQTQDYF----------------L 281
R + RA + +L GGQ T DYF L
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGE-GNAQL-VAIFGGQGNTDDYFEELRDLYQTYHVLVGDL 187
Query: 282 LDVTNGILW-------------IRGLQV-----NIIIVPEHIYLSSGDPVPVDEGGNITL 323
+ + L +GL + N P+ YL S +P+
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS---IPI-------- 236
Query: 324 LPSLLPLLSPYYANRVTEYRIIRQARHGAVYFSSNKVAIMRCTPQQLQAGL 374
S PL+ V Q H Y + K+ + TP +L++ L
Sbjct: 237 --S-CPLIG------VI------QLAH---YVVTAKL--LGFTPGELRSYL 267
Score = 48.5 bits (115), Expect = 3e-06
Identities = 44/260 (16%), Positives = 86/260 (33%), Gaps = 79/260 (30%)
Query: 59 VQNNVFAEGLHFRLPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLARPDASKLP 118
+V+ + + + I+ + + P ++ G + + + R + S +
Sbjct: 1641 AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI--------RENYSAM- 1691
Query: 119 KVYQHL--GLDFDEKVLPSICNEVLKSVVAKFNASQ--L-ITQRQQVSLLVKSQLIERA- 172
+++ + G EK+ I NE S F + + L TQ Q +L + +
Sbjct: 1692 -IFETIVDGKLKTEKIFKEI-NEHSTSYT--FRSEKGLLSATQFTQPALTLMEKAAFEDL 1747
Query: 173 -KDFNIILDD-------------VSITD-LSF----------GK--------------DY 193
I D S+ D +S G +Y
Sbjct: 1748 KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 194 T-AAVEAKQVAQQEAQRAV-FVVERAKQEK-------------QQKILQAEGEAEAAKKL 238
A+ +VA +Q A+ +VVER + QQ + A G+ A +
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA-A-GDLRALDTV 1865
Query: 239 GLAVGQNPGYLKLRKIRAAQ 258
+ ++KL+KI +
Sbjct: 1866 TNVLN----FIKLQKIDIIE 1881
Score = 48.1 bits (114), Expect = 4e-06
Identities = 61/322 (18%), Positives = 102/322 (31%), Gaps = 102/322 (31%)
Query: 20 VGVGLKLAALAGAA-------------AYGVSQSMFTVEGGHRAIMFSRIGGVQNNVFAE 66
G+G+ L + AA YG FS + V NN
Sbjct: 1629 QGMGMDLYKTSKAAQDVWNRADNHFKDTYG----------------FSILDIVINNPVNL 1672
Query: 67 GLHFRLPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLARPDASKLPKVYQHL-- 124
+HF + ++I R + S + +++ +
Sbjct: 1673 TIHFGGE------------KGKRI--------------------RENYSAM--IFETIVD 1698
Query: 125 GLDFDEKVLPSICNEVLKSVVAKFNASQ--L-ITQRQQVSLLVKSQLI-ERAKDFNIILD 180
G EK+ I NE S F + + L TQ Q +L + + E K +I
Sbjct: 1699 GKLKTEKIFKEI-NEHSTSYT--FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPA 1755
Query: 181 DVSITDLSFGKDYTA-AVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLG 239
D + S G +Y A A A ++ + VF R + A E +
Sbjct: 1756 DATFAGHSLG-EYAALASLADVMSIESLVEVVF--YRGM-----TMQVAVPRDELGRSNY 1807
Query: 240 LAVGQNPGYLKLRKIRAAQNIAHTRLHYVQAGGQNQTQDYFLLDVTNGILWIRGLQVNII 299
+ NPG R A + + L YV +T +L+++ N + Q +
Sbjct: 1808 GMIAINPG-------RVAASFSQEALQYVVERVGKRTG--WLVEIVN--YNVENQQ--YV 1854
Query: 300 IVPEHIYLSSGDPVPVDEGGNI 321
+GD +D N+
Sbjct: 1855 A--------AGDLRALDTVTNV 1868
Score = 38.9 bits (90), Expect = 0.003
Identities = 31/155 (20%), Positives = 49/155 (31%), Gaps = 61/155 (39%)
Query: 22 VGLKLAALAGAAAYGVSQSMFTVEGGHRAIMFSRIGGVQNNVFAEGLHFRLPWFQYPIIY 81
GL L A G+ QS + R + FS N F LP
Sbjct: 387 YGLNLTLRKAKAPSGLDQS--RIPFSERKLKFS-------NRF-------LP-------- 422
Query: 82 DIRSRPRKISSP-----------TGSKDLQMVNISLRVLARPDASKL--PKVYQ-HLGLD 127
++SP +KDL N+S +A + P VY G D
Sbjct: 423 --------VASPFHSHLLVPASDLINKDLVKNNVSF------NAKDIQIP-VYDTFDGSD 467
Query: 128 ---FDEKVLPSICNEVLKSVV-----AKFNASQLI 154
+ I + +++ V +F A+ ++
Sbjct: 468 LRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH,
membrane fusion, trafficking, transmembrane, membrane
protein; 3.20A {Pyrococcus horikoshii}
Length = 188
Score = 44.1 bits (105), Expect = 2e-05
Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 17/115 (14%)
Query: 141 LKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAK 200
L+SV+ + + +L+++R ++++ ++ + E + I + V I D+ A+
Sbjct: 66 LRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMAR- 124
Query: 201 QVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLGLA---VGQNPGYLKLR 252
Q EA+R E++ +I AE E +AA+KL A + ++P L+LR
Sbjct: 125 ---QAEAER----------ERRARITLAEAERQAAEKLREAAEIISEHPMALQLR 166
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 1e-04
Identities = 53/310 (17%), Positives = 101/310 (32%), Gaps = 85/310 (27%)
Query: 121 YQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIIL- 179
+ H +DF+ ++L F + + V + KS L ++ + I+
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDN---FDCKDVQDMPKSIL--SKEEIDHIIM 56
Query: 180 --DDVSITDLSFGKDYTAAVEAKQVAQQEAQRAV---------FVVERAKQEKQQKILQA 228
D VS T F + +KQ ++ Q+ V F++ K E++Q +
Sbjct: 57 SKDAVSGTLRLFWT-----LLSKQ--EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 229 EGEAEAAKKLG--------LAVGQNPGYLKLRK----IRAAQNIAHTRLHYVQAGGQNQT 276
E +L V + YLKLR+ +R A+N+ + V G +T
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL---IDGV--LGSGKT 164
Query: 277 -------QDYFLLDV-TNGILWIRGLQVNIIIVPEHIYLSSGDPVPVDEGGNITLLPSLL 328
Y + I W+ N PE + + +L LL
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNS---PETV---------------LEMLQKLL 206
Query: 329 PLLSPYYANRVTEYRIIRQARHGAVYFSSNKVAIMRCTPQQLQAGLI-----QDKE---- 379
+ P + +R I+ H + + + L+ Q+ +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-----KPYENCLLVLLNVQNAKAWNA 261
Query: 380 ----SRVMFT 385
+++ T
Sbjct: 262 FNLSCKILLT 271
Score = 41.0 bits (95), Expect = 7e-04
Identities = 37/249 (14%), Positives = 75/249 (30%), Gaps = 61/249 (24%)
Query: 104 ISLRVLARPDASKLPKVYQHLGLDFDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLL 163
++L+ P+ + ++ Q L D P+ + S K + + ++ L
Sbjct: 187 LNLKNCNSPET--VLEMLQKLLYQID----PNWTSRSDHSSNIKLRIHSI---QAELRRL 237
Query: 164 VKSQLIERAKDFNIILDDVSITDL--SFGKDYTAAV----EAKQVAQQEAQRAVFVVERA 217
+KS+ E ++L +V +F + + + KQV + +
Sbjct: 238 LKSKPYENCL---LVLLNVQNAKAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHIS-- 290
Query: 218 KQEKQQKILQAEGEAEA--AKKLGL--------AVGQNPGYLKL--RKIRAAQNIAH-TR 264
+ L E ++ K L + NP L + IR +A
Sbjct: 291 -LDHHSMTL-TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR--DGLATWDN 346
Query: 265 LHYVQAGGQNQTQDYFL--LDVTNGILWIRGLQVNIIIVPEHIYLSSGDPVPVDEGGNIT 322
+V + L L+ R + + + P +P
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAE----YRKMFDRLSVFPPSA------HIP-------- 388
Query: 323 LLPSLLPLL 331
LL L+
Sbjct: 389 --TILLSLI 395
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.8 bits (87), Expect = 0.003
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 11/71 (15%)
Query: 198 EAKQVAQQ-EAQRAVFVVERAKQEKQQKILQAEGEAEAAKKLGL---AVGQNPGYLKLRK 253
+A ++ Q+ E+ R R +Q K+ LQ A + A + + +
Sbjct: 76 QADRLTQEPESIRK----WREEQRKR---LQELDAASKVMEQEWREKAKKDLEEWNQRQS 128
Query: 254 IRAAQNIAHTR 264
+ +N + R
Sbjct: 129 EQVEKNKINNR 139
Score = 32.8 bits (74), Expect = 0.094
Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 154 ITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAKQVAQQEAQRAVFV 213
+ + S +++ + E+AK L++ + + + VE ++ + A +A F
Sbjct: 98 LQELDAASKVMEQEWREKAKKD---LEE-------WNQRQSEQVEKNKINNRIADKA-FY 146
Query: 214 VER 216
+
Sbjct: 147 QQP 149
Score = 27.8 bits (61), Expect = 5.2
Identities = 8/45 (17%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 191 KDYTAAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAA 235
D A+ +Q +++A++ + + + E+ +K A+ A
Sbjct: 101 LD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, cell adhesion; NMR
{Mus musculus} SCOP: d.43.2.1
Length = 143
Score = 36.4 bits (84), Expect = 0.004
Identities = 14/78 (17%), Positives = 30/78 (38%)
Query: 130 EKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSF 189
+ V+ L+S++ Q+ R Q + LV+ I + +I D+
Sbjct: 65 KNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYD 124
Query: 190 GKDYTAAVEAKQVAQQEA 207
DY +++ Q + +
Sbjct: 125 KVDYLSSLGKTQTSGPSS 142
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 32.4 bits (74), Expect = 0.29
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 181 DVSITDLSFGKDYTA---AVEAKQVAQQEAQ---RAVFVVE 215
D+S + +FG TA AV+A + A EA V VV+
Sbjct: 231 DLSFSHRTFGFQ-TAVEKAVQAIRAAYAEAVSANYGVGVVK 270
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 31.3 bits (70), Expect = 0.58
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 195 AAVEAKQVAQQEAQRAVFVVERAKQEKQQKILQAEGEAEAAKK 237
AVE+ A+ EA+ E A+ E + +LQA+ +A+A
Sbjct: 714 MAVESTGNAKAEAESRA---EAARIEGEGSVLQAKLKAQALAI 753
Score = 30.2 bits (67), Expect = 1.4
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 7/89 (7%)
Query: 195 AAVEAKQVAQQEAQRAVFVVER----AKQEKQQKILQAEGEAEAAKKLG---LAVGQNPG 247
+ AK A+ A+ A E AK + Q ++ E E E KK+ L +
Sbjct: 718 STGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQL 777
Query: 248 YLKLRKIRAAQNIAHTRLHYVQAGGQNQT 276
L++ K + N+ + + T
Sbjct: 778 ELEVSKAQQLANVEAKKFKEMTEALGPGT 806
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 29.7 bits (67), Expect = 2.0
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
Query: 181 DVSITDLSFGKDYTA---AVEA----KQVAQQEAQRAVFVVE 215
+V T+ S G D T +E KQ A R VFVVE
Sbjct: 705 NVPGTEYSLGSD-TCLNSFMEYCDVIKQSAAATRNR-VFVVE 744
>2k88_A Vacuolar proton pump subunit G; G subunit, V1VO ATPase, VMA10P,
hydrogen ION transport, hydrolase, ION transport,
transport; NMR {Saccharomyces cerevisiae}
Length = 60
Score = 25.7 bits (56), Expect = 5.1
Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 203 AQQEAQRAVFVVERAKQEKQQKILQAEGEAEA 234
A++EA +V +A++ +Q K+ QA+ +A
Sbjct: 14 AEKEAHE---IVSKARKYRQDKLKQAKTDAAK 42
>3tt2_A GCN5-related N-acetyltransferase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
sandwich; HET: MES; 2.73A {Sphaerobacter thermophilus}
Length = 330
Score = 27.4 bits (60), Expect = 7.9
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 18 KGVGVGLKLAALAGAAAYGVSQSMFTVEGGHRA 50
+G+ + L GV + +V+ R
Sbjct: 261 RGIALALLQEVFGVYYRRGVREVELSVDAESRT 293
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.387
Gapped
Lambda K H
0.267 0.0592 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,827,615
Number of extensions: 361933
Number of successful extensions: 837
Number of sequences better than 10.0: 1
Number of HSP's gapped: 819
Number of HSP's successfully gapped: 26
Length of query: 388
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 293
Effective length of database: 4,049,298
Effective search space: 1186444314
Effective search space used: 1186444314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.4 bits)