RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5087
         (388 letters)



>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 143

 Score = 53.9 bits (129), Expect = 1e-09
 Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 5/117 (4%)

Query: 96  SKDLQMVNISLRVLAR---PDASKLPKVYQHLGLDFD--EKVLPSICNEVLKSVVAKFNA 150
           + +   + ++     +             Q LG +    + V+       L+S++     
Sbjct: 26  TAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTV 85

Query: 151 SQLITQRQQVSLLVKSQLIERAKDFNIILDDVSITDLSFGKDYTAAVEAKQVAQQEA 207
            Q+   R Q + LV+           I +   +I D+    DY +++   Q +   +
Sbjct: 86  EQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGPSS 142


>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain
           {Escherichia coli [TaxId: 562]}
          Length = 61

 Score = 25.0 bits (55), Expect = 3.7
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 195 AAVEAKQVAQQEAQRAVFVVE----RAKQEKQQKILQAEGEAEAAKK 237
           A  EA+ + +Q  +R   +++     A+QE+ + + QA+ E EA +K
Sbjct: 7   AKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERK 53


>d1p5ta_ b.55.1.2 (A:) Docking protein 1, Dok1 {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 107

 Score = 26.0 bits (57), Expect = 4.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 35 YGVSQSMFTVEGGHRA 50
          YG  + MF+ E G R 
Sbjct: 59 YGRDKVMFSFEAGRRC 74


>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 101

 Score = 25.2 bits (55), Expect = 6.7
 Identities = 4/32 (12%), Positives = 12/32 (37%)

Query: 296 VNIIIVPEHIYLSSGDPVPVDEGGNITLLPSL 327
           + ++I      L       + +  +I  + +L
Sbjct: 67  ILVLINDADWELLGELDYQLQDQDSILFISTL 98


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,360,058
Number of extensions: 62636
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 4
Length of query: 388
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 301
Effective length of database: 1,213,086
Effective search space: 365138886
Effective search space used: 365138886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)