BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy509
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 68/86 (79%)
Query: 1 MKAEGFQFPVLKESDAMFSADTAPEWMDGDTCHRCRTTFSLVQRKHHCRACGQVFCQLCS 60
MK EG FP KESDAMF+A+ AP+W+D + CHRCR F ++ RKHHCRACGQ+FC CS
Sbjct: 136 MKVEGHVFPEFKESDAMFAAERAPDWVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCS 195
Query: 61 SKSTSLPKFGIEKEVRVCEDCHEKFT 86
SK +++PKFGIEKEVRVCE C+E+
Sbjct: 196 SKYSTIPKFGIEKEVRVCEPCYEQLN 221
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of
Hrs, A Protein Involved In Membrane Trafficking And
Signal Transduction
Length = 220
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 62/81 (76%)
Query: 1 MKAEGFQFPVLKESDAMFSADTAPEWMDGDTCHRCRTTFSLVQRKHHCRACGQVFCQLCS 60
+KA+G FP L+E+DAMF+ADTAP W DG CHRCR F+ RKHHCR CGQVFC C+
Sbjct: 133 LKAKGHTFPELREADAMFTADTAPNWADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCT 192
Query: 61 SKSTSLPKFGIEKEVRVCEDC 81
+K LPK+GIEKEVRVC+ C
Sbjct: 193 AKQCPLPKYGIEKEVRVCDGC 213
>pdb|1VFY|A Chain A, Phosphatidylinositol-3-Phosphate Binding Fyve Domain Of
Vps27p Protein From Saccharomyces Cerevisiae
Length = 73
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 41/64 (64%)
Query: 22 TAPEWMDGDTCHRCRTTFSLVQRKHHCRACGQVFCQLCSSKSTSLPKFGIEKEVRVCEDC 81
T +W+D D C C FSL+ RKHHCR+CG VFCQ SS S LP GI + VRVC+ C
Sbjct: 4 TPADWIDSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSC 63
Query: 82 HEKF 85
E +
Sbjct: 64 FEDY 67
>pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger
Fyve Domain-Containing Protein 12
Length = 89
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 26 WMDGDT---CHRCRTTFSLVQRKHHCRACGQVFCQLCSSKSTSLPKFGIEKEVRVCEDCH 82
W+ D C +C FS+ +RKHHCR CG +FC CSS +LP + K VRVC+ CH
Sbjct: 20 WLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSY--PKPVRVCDSCH 77
>pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve
Domain-Containing Protein
Length = 82
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 26 WMDGDT---CHRCRTTFSLVQRKHHCRACGQVFCQLCSSKSTSLPKFGIEKEVRVCEDCH 82
W+ D C +C FS+ +RKHHCR CG +FC CSS +LP + K VRVC+ CH
Sbjct: 13 WLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSY--PKPVRVCDSCH 70
>pdb|3T7L|A Chain A, Crystal Structure Of The Fyve Domain Of Endofin
(Zfyve16) At 1.1a Resolution
Length = 90
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 15 DAMFSADTAPEWM---DGDTCHRCRTTFSLVQRKHHCRACGQVFCQLCSSKSTSLPKFGI 71
+ + P W+ + C C+ F+ +R+HHCRACG+VFC +C ++ L +
Sbjct: 3 EGLVLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQY--L 60
Query: 72 EKEVRVCEDCHEKFT 86
EKE RVC C+E +
Sbjct: 61 EKEARVCVVCYETIS 75
>pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve
Domain From Leishmania Major
Length = 84
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 28 DGDTCHRCRTTFSLVQRKHHCRACGQVFCQLCSSKSTSLPKFGIEKEVRVCEDCH 82
D C+ C F+ R+HHCR CG V C CS ++P GI + RVC+ C+
Sbjct: 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACY 74
>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
pdb|1JOC|B Chain B, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
Length = 125
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 31 TCHRCRTTFSLVQRKHHCRACGQVFCQLCSSKSTSLPKFGIEKEVRVCEDC 81
C C FS+ R+HHCR CG +FC CS+K+ P +K VRVC+ C
Sbjct: 71 NCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTP--SSKKPVRVCDAC 119
>pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed
With Inositol 1,3-Bisphosphate
pdb|1HYJ|A Chain A, Solution Structure Of The Eea1 Fyve Domain
Length = 65
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 31 TCHRCRTTFSLVQRKHHCRACGQVFCQLCSSKSTSLPKFGIEKEVRVCEDC 81
C C FS+ R+HHCR CG +FC CS+K+ P +K VRVC+ C
Sbjct: 11 NCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTP--SSKKPVRVCDAC 59
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 32 CHRCRTTFSLVQRKHHCRACGQVFCQLCSSKSTSLPKFGIEKEVRVCEDC 81
C C FSL R+HHC ACG++ C+ CS L K+ ++ +VC+ C
Sbjct: 378 CXNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPL-KYLKDRXAKVCDGC 426
>pdb|1WFK|A Chain A, Fyve Domain Of Fyve Domain Containing 19 Protein From
Mus Musculus
Length = 88
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 32 CHRCRTTFSLVQRKHHCRACGQVFCQLCSSKSTSLPKFGIEKEVRVCEDCHEKFT 86
C+ C F+L ++++ C+ CG+ FC C S S +P+ G ++ +VC+ CH T
Sbjct: 12 CYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQ-KVCKQCHTILT 65
>pdb|1X4U|A Chain A, Solution Structure Of The Fyve Domain From Human Fyve
Domain Containing 27 Isoform B Protein
Length = 84
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 32 CHRCRTTFSLVQRKHHCRACGQVFCQLCSSKSTSLPKFGI------EKEVRVCEDCHEKF 85
C C TFS+++++ C CG FC C S G + V VC C++
Sbjct: 17 CTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTL 76
Query: 86 T 86
+
Sbjct: 77 S 77
>pdb|1Y02|A Chain A, Crystal Structure Of A Fyve-type Domain From Caspase
Regulator Carp2
Length = 120
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 31 TCHRCRTTFSLVQRKHHCRACGQVFCQLCSSKSTSLPKF 69
+C C F+ RK C C + FC CSS+ + P+
Sbjct: 21 SCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRL 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,392,435
Number of Sequences: 62578
Number of extensions: 155395
Number of successful extensions: 351
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 25
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)