RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy509
(158 letters)
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 94.3 bits (234), Expect = 6e-27
Identities = 43/70 (61%), Positives = 49/70 (70%)
Query: 17 MFSADTAPEWMDGDTCHRCRTTFSLVQRKHHCRACGQVFCQLCSSKSTSLPKFGIEKEVR 76
MF+ADTAP W DG CHRCR F+ RKHHCR CGQVFC C++K LPK+GIEKEVR
Sbjct: 1 MFTADTAPNWADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVR 60
Query: 77 VCEDCHEKFT 86
VC+ C
Sbjct: 61 VCDGCFAALQ 70
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 67
Score = 82.4 bits (203), Expect = 3e-22
Identities = 33/64 (51%), Positives = 40/64 (62%)
Query: 25 EWMDGDTCHRCRTTFSLVQRKHHCRACGQVFCQLCSSKSTSLPKFGIEKEVRVCEDCHEK 84
+W+D D C C FSL+ RKHHCR+CG VFCQ SS S LP GI + VRVC+ C E
Sbjct: 1 DWIDSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFED 60
Query: 85 FTNY 88
+
Sbjct: 61 YEFI 64
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 72.4 bits (177), Expect = 3e-18
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 32 CHRCRTTFSLVQRKHHCRACGQVFCQLCSSKSTSLPKFGIEKEVRVCEDCHEKFTNYYRS 91
C+ C F+L ++++ C+ CG+ FC C S S +P+ G + +VC+ CH T
Sbjct: 12 CYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGN-TQQKVCKQCHTILTR---- 66
Query: 92 PTPGAAGSKSEEMLPAEYLNSSLA 115
G++ + S+ P Y + +
Sbjct: 67 ---GSSDNASKWSPPQNYKSGPSS 87
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 64.7 bits (157), Expect = 2e-15
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 26 WMDGDT---CHRCRTTFSLVQRKHHCRACGQVFCQLCSSKSTSLPKFGIEKEVRVCEDCH 82
W + + C C FS+ R+HHCR CG +FC CS+K+ P +K VRVC+ C
Sbjct: 2 WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTP--SSKKPVRVCDACF 59
Query: 83 EK 84
Sbjct: 60 ND 61
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein
Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 59.2 bits (143), Expect = 2e-13
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 31 TCHRCRTTFSLVQRKHHCRACGQVFCQLCSSKSTSLPKFGIEKEVRVCEDCHE 83
+C C F+ RK C C + FC CSS+ R+C C
Sbjct: 2 SCKSCGAHFANTARKQTCLDCKKNFCMTCSSQV--------GNGPRLCLLCQR 46
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 55.9 bits (134), Expect = 2e-11
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 30 DTCHRCRTTFS-LVQRKHHCRACGQVFCQLCSSKSTSLPKFGIEKEVRVCEDCHEKFTNY 88
+ C C L C C + C C +++ V +C+ C E+ +
Sbjct: 49 NRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETS----NNRPHPVWLCKICLEQREVW 104
Query: 89 YRS 91
RS
Sbjct: 105 KRS 107
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 25.2 bits (55), Expect = 1.2
Identities = 8/32 (25%), Positives = 9/32 (28%)
Query: 28 DGDTCHRCRTTFSLVQRKHHCRACGQVFCQLC 59
DG C C + CG F C
Sbjct: 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAEC 35
>d1ufra_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 26.2 bits (57), Expect = 1.4
Identities = 6/50 (12%), Positives = 16/50 (32%)
Query: 7 QFPVLKESDAMFSADTAPEWMDGDTCHRCRTTFSLVQRKHHCRACGQVFC 56
P ++E+ F + D + RT + + +++
Sbjct: 81 YRPQVRETRIPFDLTGKAIVLVDDVLYTGRTARAALDALIDLGRPRRIYL 130
>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 105
Score = 25.6 bits (56), Expect = 1.5
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
Query: 36 RTTFSLVQRKHHCRACGQVF---------CQLCSSKSTSLPKFGIEKE 74
R L+ + CR CG VF C C S+ P+F +E++
Sbjct: 58 REGMVLLIKPAQCRKCGFVFKAEINIPSRCPKCKSEWIEEPRFKLERK 105
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 25.2 bits (54), Expect = 3.0
Identities = 10/68 (14%), Positives = 20/68 (29%)
Query: 59 CSSKSTSLPKFGIEKEVRVCEDCHEKFTNYYRSPTPGAAGSKSEEMLPAEYLNSSLALQP 118
++ TS K K + + + + + G K+ + E+
Sbjct: 38 DTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPD 97
Query: 119 QVPPPKAT 126
PP A
Sbjct: 98 AKIPPNAK 105
>d1j0ta_ a.163.1.1 (A:) Mlt-inhibiting hormone (MIH) {Kuruma prawn
(Marsupenaeus japonicus) [TaxId: 27405]}
Length = 78
Score = 24.3 bits (53), Expect = 3.4
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 72 EKEVRVCEDCHEKFTNYYRSP 92
+K VRVCEDC TN +R P
Sbjct: 19 KKVVRVCEDC----TNIFRLP 35
>d1lpva_ g.62.1.1 (A:) DM domain of Doublesex (dsx) {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 52
Score = 23.2 bits (50), Expect = 4.6
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 31 TCHRCRTTFSLVQRKHHCRACGQVFCQ 57
C RCR + K H R C +C
Sbjct: 9 NCARCRNHGLKITLKGHKRYCKFRYCT 35
>d3ehwa1 b.85.4.1 (A:24-159) Deoxyuridine 5'-triphosphate
nucleotidohydrolase (dUTPase) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 136
Score = 24.4 bits (52), Expect = 4.9
Identities = 5/38 (13%), Positives = 8/38 (21%)
Query: 22 TAPEWMDGDTCHRCRTTFSLVQRKHHCRACGQVFCQLC 59
+D D ++ G QL
Sbjct: 73 VGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLI 110
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing
protein At1g12440 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 74
Score = 23.3 bits (50), Expect = 6.1
Identities = 6/28 (21%), Positives = 7/28 (25%), Gaps = 3/28 (10%)
Query: 32 CHRCRTTFSLVQRKHHCRACGQVFCQLC 59
C C + CG FC
Sbjct: 28 CLSCNKKVGVTG---FKCRCGSTFCGTH 52
>d1qxfa_ g.41.8.4 (A:) Ribosomal protein S27e {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 58
Score = 22.8 bits (49), Expect = 7.3
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 32 CHRCRTTFSLVQRKHHCRACGQVFCQ 57
C + F C CG+ +
Sbjct: 13 CEHEQVIFDHPSTIVKCIICGRTVAE 38
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 23.1 bits (49), Expect = 7.6
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 32 CHRCRTTFSLV--QRKHHCRACGQVFCQLCSSK 62
C +C F Q + C C Q FC C +
Sbjct: 21 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQ 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.128 0.388
Gapped
Lambda K H
0.267 0.0488 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 592,930
Number of extensions: 26804
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 38
Length of query: 158
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,336,656
Effective search space: 106932480
Effective search space used: 106932480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.2 bits)