BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5091
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7Z7K0|COXM1_HUMAN COX assembly mitochondrial protein homolog OS=Homo sapiens
GN=CMC1 PE=1 SV=1
Length = 106
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
Query: 3 DPNDKTLRKLEKDVLIEQMMRDIARTEKCAEFTEALEKCGRDNGWKGVFTCRKENEKMKE 62
DP D+ LR +EKDVLI ++MR+ A+ E+C+E + KC +++G V CRKEN +KE
Sbjct: 4 DPADQHLRHVEKDVLIPKIMREKAK-ERCSEQVQDFTKCCKNSGVLMVVKCRKENSALKE 62
Query: 63 CMAHWYHNEDFRKEVTEMYLQQRTDYRKTGLSKKMR 98
C+ +Y++ F +E YL++R ++RKTG+ K R
Sbjct: 63 CLTAYYNDPAFYEECKMEYLKEREEFRKTGIPTKKR 98
>sp|Q3SZM6|COXM1_BOVIN COX assembly mitochondrial protein homolog OS=Bos taurus GN=CMC1
PE=3 SV=1
Length = 106
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
Query: 3 DPNDKTLRKLEKDVLIEQMMRDIARTEKCAEFTEALEKCGRDNGWKGVFTCRKENEKMKE 62
DP+++ LR +EKDVLI ++MR+ AR E+C+E + KC +D+G V CRKEN +K+
Sbjct: 4 DPSEQHLRHVEKDVLIPKIMREKAR-ERCSEQVQDFTKCCKDSGVLMVVKCRKENSALKD 62
Query: 63 CMAHWYHNEDFRKEVTEMYLQQRTDYRKTGLSKKMR 98
C+ +Y + F +E YL++R ++R+TG+ K R
Sbjct: 63 CLTSYYKDPAFYEECKMEYLKEREEFRRTGIPTKKR 98
>sp|Q9CPZ8|COXM1_MOUSE COX assembly mitochondrial protein homolog OS=Mus musculus
GN=Cmc1 PE=3 SV=1
Length = 106
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
Query: 3 DPNDKTLRKLEKDVLIEQMMRDIARTEKCAEFTEALEKCGRDNGWKGVFTCRKENEKMKE 62
DP ++ LR +EKDVLI +++R+ AR E+C+E E +C +D+G V CRKEN +K+
Sbjct: 4 DPAEQHLRHVEKDVLIPKIIREKAR-ERCSEQVEDFTRCCKDSGILMVLKCRKENSALKD 62
Query: 63 CMAHWYHNEDFRKEVTEMYLQQRTDYRKTGLSKKMR 98
C+ +Y++ F +E YL++R ++RKTG+ K R
Sbjct: 63 CLTAYYNDPAFYEECKLEYLKEREEFRKTGVPTKKR 98
>sp|P36064|COXM1_YEAST COX assembly mitochondrial protein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CMC1 PE=1 SV=2
Length = 111
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 19 EQMMRDIARTE---KCAEFTEALEKCGRDNGWKGVFTCRKENEKMKECMAHWYHNEDF 73
EQ R +TE KCA F +A+ C + NG K TC K+ ++MK C+ + +E +
Sbjct: 27 EQQARKNLKTETYKKCANFVQAMADCAKANGMKVFPTCDKQRDEMKSCLLFYQTDEKY 84
>sp|A6ZZI5|COXM1_YEAS7 COX assembly mitochondrial protein OS=Saccharomyces cerevisiae
(strain YJM789) GN=CMC1 PE=3 SV=2
Length = 111
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 19 EQMMRDIARTE---KCAEFTEALEKCGRDNGWKGVFTCRKENEKMKECMAHWYHNEDF 73
EQ R +TE KCA F +A+ C + NG K TC K+ ++MK C+ + +E +
Sbjct: 27 EQQARKNLKTETYKKCANFVQAMADCAKANGMKVFPTCDKQRDEMKSCLLFYQTDEKY 84
>sp|B3LQW4|COXM1_YEAS1 COX assembly mitochondrial protein OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=CMC1 PE=3 SV=2
Length = 111
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 19 EQMMRDIARTE---KCAEFTEALEKCGRDNGWKGVFTCRKENEKMKECMAHWYHNEDF 73
EQ R +TE KCA F +A+ C + NG K TC K+ ++MK C+ + +E +
Sbjct: 27 EQQARKNLKTETYKKCANFVQAMADCAKANGMKVFPTCDKQRDEMKSCLLFYQTDEKY 84
>sp|B2JIG2|RRAAH_BURP8 Putative regulator of ribonuclease activity OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=Bphy_1374 PE=3
SV=1
Length = 164
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 6 DKTLRK--LEKDVLIEQMMRDIARTEKCAEFTEALEKCGRDNGWKG--VFTCRKENEKMK 61
D TL + LE+ + ++ D + +CA L K G NGW G VF C ++ ++
Sbjct: 49 DNTLVRATLEEKGVARVLVVDGGGSLRCALVGGNLGKLGEKNGWAGIVVFGCVRDTLELN 108
Query: 62 EC 63
EC
Sbjct: 109 EC 110
>sp|Q09715|TUP11_SCHPO Transcriptional repressor tup11 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tup11 PE=1 SV=1
Length = 614
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 71 EDFRKEVTEMYLQQ---RTDYRKTGLSKKMRKELESLGYEINIKS 112
E FRK V +MY +Q R Y K K+++ELE LG E N S
Sbjct: 51 EAFRKTVDDMYEKQKSIRETYEKD--INKLKRELEELGVEANTAS 93
>sp|B8GM40|RRAAH_THISH Putative regulator of ribonuclease activity OS=Thioalkalivibrio
sp. (strain HL-EbGR7) GN=Tgr7_2551 PE=3 SV=1
Length = 161
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Query: 8 TLRKLEKDVLIEQ----------MMRDIARTEKCAEFTEALEKCGRDNGWKGVFT 52
T+R E +VL+ Q ++ D + +CA F + L + DNGW GV
Sbjct: 44 TVRCFEDNVLVRQTLEAEGRGKVLVVDGGGSLRCALFGDMLAQTALDNGWAGVIV 98
>sp|Q552P9|Y5933_DICDI Uncharacterized protein DDB_G0275933 OS=Dictyostelium discoideum
GN=DDB_G0275933 PE=3 SV=1
Length = 121
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 4 PNDKTLRKLEKDVLIEQMMRDIARTEKCAEFTEALEKCGRDNGWKGVFTCRKENEKMKEC 63
P+ + + D + Q ++D + E C+ A C +D V+ CR+ + MK C
Sbjct: 20 PDSEVVLPAAVDSYLRQKLKDQSLKE-CSSHVAAFADCSKDKYISVVWECRELQQLMKNC 78
Query: 64 MAHWYHNE 71
+ + +E
Sbjct: 79 LVEYTTSE 86
>sp|P10051|AAC6_CITDI Aminoglycoside N(6')-acetyltransferase type 1 OS=Citrobacter
diversus GN=aacA1 PE=3 SV=1
Length = 185
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 20/93 (21%)
Query: 27 RTEKCAEFTEALEKCGRDNGWKGVFTCRKENEKMKEC---------------MAHWYHNE 71
+ E TEA G +N W + + KE +KEC + W
Sbjct: 15 QLEAANILTEAFNDLG-NNSWPDMTSATKE---VKECIESPNLCFGLLINNSLVGWIGLR 70
Query: 72 DFRKEVTEMY-LQQRTDYRKTGLSKKMRKELES 103
KE E++ L R DY+ G+ K + KELE+
Sbjct: 71 PMYKETWELHPLVVRPDYQNKGIGKILLKELEN 103
>sp|P19812|UBR1_YEAST E3 ubiquitin-protein ligase UBR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBR1 PE=1 SV=1
Length = 1950
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 28 TEKCAEFTEALEKCGRDNGWKGVFTCRKENEK 59
T+ C EFT + CG + W C+ E ++
Sbjct: 164 TDICTEFTSGICDCGDEEAWNSPLHCKAEEQE 195
>sp|B2KCC0|LON_ELUMP Lon protease OS=Elusimicrobium minutum (strain Pei191) GN=lon PE=3
SV=1
Length = 830
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 57 NEKMKECMAHWYHNEDFRKEVTEMYLQQRTDYRKTGLSKKMRKELE 102
NE+MK +DF+KE+ E+ R+ +K GL K ++ E
Sbjct: 242 NEQMKAIQKELSQKDDFQKEIDEL----RSKIKKNGLPKNAKESAE 283
>sp|A1WU91|RRAAH_HALHL Putative regulator of ribonuclease activity OS=Halorhodospira
halophila (strain DSM 244 / SL1) GN=Hhal_0465 PE=3 SV=1
Length = 164
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 30 KCAEFTEALEKCGRDNGWKG--VFTCRKENEKMKE 62
+CA + L + GR+NGW G ++ C +++ ++ +
Sbjct: 74 RCALLGDRLAELGRENGWSGAIIYGCVRDSAELAQ 108
>sp|A0B9A2|KAD_METTP Adenylate kinase OS=Methanosaeta thermophila (strain DSM 6194 / PT)
GN=adk PE=3 SV=1
Length = 215
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 18/90 (20%)
Query: 12 LEKDVLIEQMMRDIARTEKCAEFTEALEKCGRDNGWKGVFTCRKENEKMKECMAHWYHNE 71
L DV E+++R ++ C KCGR + +F K K EC YH +
Sbjct: 111 LNIDVPDEELVRRLSGRRMC--------KCGRS--YHIIFNPPKVPGKCDECGGELYHRD 160
Query: 72 DFRKEVT----EMYLQQRTD----YRKTGL 93
D ++E ++Y QQ Y K GL
Sbjct: 161 DDKEEAILNRLKVYKQQTQPLIDYYTKAGL 190
>sp|O51461|DER_BORBU GTPase Der OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP
102532 / DSM 4680) GN=der PE=3 SV=1
Length = 433
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 7 KTLRKLEKDVLIEQMMRDIARTEKCAEFTEALEKCGRDNGWKGVFTCRKENEKMKECMAH 66
K L LEK LI ++ DI E E + +E+ R K V K + K KEC+AH
Sbjct: 76 KVLSSLEKVDLI-LLVLDI--NEILLEDYQIIERL-RKYSSKVVLVLNKVDTKDKECLAH 131
Query: 67 WYHNEDFRK 75
+HN F++
Sbjct: 132 EFHNLGFKR 140
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,715,187
Number of Sequences: 539616
Number of extensions: 1473826
Number of successful extensions: 4389
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 4365
Number of HSP's gapped (non-prelim): 43
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)