Query psy5091
Match_columns 112
No_of_seqs 102 out of 123
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 17:06:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lqt_A Coiled-coil-helix-coile 91.6 0.44 1.5E-05 31.7 5.5 43 52-94 15-64 (85)
2 2lql_A Coiled-coil-helix-coile 91.2 0.15 5E-06 35.2 3.0 41 25-67 56-96 (113)
3 1ei0_A P8MTCP1; helix-turn-hel 85.8 0.84 2.9E-05 25.7 3.2 37 30-67 2-38 (38)
4 1hp8_A HU-P8; leukemia, cystei 64.1 3.4 0.00011 26.3 1.8 38 30-68 6-43 (68)
5 2k3j_A Mitochondrial intermemb 63.7 4.5 0.00015 29.2 2.6 38 30-67 67-105 (146)
6 2zxt_A Maltose-binding peripla 63.6 4 0.00014 32.5 2.5 38 30-67 406-444 (465)
7 2lql_A Coiled-coil-helix-coile 57.0 7.7 0.00026 26.4 2.7 42 22-65 8-49 (113)
8 1hp8_A HU-P8; leukemia, cystei 44.2 19 0.00066 22.7 2.9 22 51-72 5-26 (68)
9 1u96_A Cytochrome C oxidase co 42.7 14 0.00049 23.4 2.1 21 30-50 46-66 (69)
10 3k6g_A Telomeric repeat-bindin 42.6 22 0.00075 24.5 3.1 39 48-93 58-100 (111)
11 2x9q_A Cyclodipeptide syntheta 28.0 1.8E+02 0.0062 22.9 6.7 74 1-85 129-211 (289)
No 1
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=91.62 E-value=0.44 Score=31.72 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=32.7
Q ss_pred ccHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHHHHHHhCCc
Q psy5091 52 TCRKENEKMKECMAHWYHNE-------DFRKEVTEMYLQQRTDYRKTGLS 94 (112)
Q Consensus 52 ~CR~e~~amk~Cl~~~~~d~-------ef~ee~k~eYl~eR~e~r~tgv~ 94 (112)
-|-++.++--.||..+..|- +-+.+||..|+..|.+.|+.||.
T Consensus 15 PC~~e~~~S~kCL~~n~yDr~~C~~yF~~Yk~CKk~W~~v~~eRRr~Gi~ 64 (85)
T 2lqt_A 15 PCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQRRKNGVK 64 (85)
T ss_dssp CCHHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 37777777777888665442 23567999999999999999984
No 2
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=91.20 E-value=0.15 Score=35.22 Aligned_cols=41 Identities=29% Similarity=0.476 Sum_probs=34.0
Q ss_pred HHHHhhhHHHHHHHHhhhccCcceeeeccHHHHHHHHHHHHHh
Q psy5091 25 IARTEKCAEFTEALEKCGRDNGWKGVFTCRKENEKMKECMAHW 67 (112)
Q Consensus 25 rar~e~C~~~vk~Fa~C~k~~g~~~~~~CR~e~~amk~Cl~~~ 67 (112)
+++. .|.+++.+|..|-..+.-. ++.||++..+|..|....
T Consensus 56 ~I~~-~C~~ef~~y~~CL~~n~~~-~~~Cr~~~~~f~~Cae~v 96 (113)
T 2lql_A 56 QIRQ-ACAQPFEAFEECLRQNEAA-VGNCAEHMRRFLQCAEQV 96 (113)
T ss_dssp HHHH-HTHHHHHHHHHHHHHCTTC-TTTCCSHHHHHHHHHTTC
T ss_pred HHHH-HhHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHh
Confidence 3454 7999999999999988643 589999999999998654
No 3
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=85.77 E-value=0.84 Score=25.74 Aligned_cols=37 Identities=22% Similarity=0.557 Sum_probs=28.5
Q ss_pred hhHHHHHHHHhhhccCcceeeeccHHHHHHHHHHHHHh
Q psy5091 30 KCAEFTEALEKCGRDNGWKGVFTCRKENEKMKECMAHW 67 (112)
Q Consensus 30 ~C~~~vk~Fa~C~k~~g~~~~~~CR~e~~amk~Cl~~~ 67 (112)
-|.....+|.+|-..++. ..-+|....++|++|=.+|
T Consensus 2 pC~~~a~a~q~CL~~n~~-d~skCq~~id~l~~Cc~~~ 38 (38)
T 1ei0_A 2 PCQKQAAEIQKCLQANSY-LESKCQAVIQELKKCAAQY 38 (38)
T ss_dssp CSHHHHHHHHHHHHHTTT-CGGGTHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHhcC
Confidence 377788888888888773 3458888888888887665
No 4
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=64.08 E-value=3.4 Score=26.26 Aligned_cols=38 Identities=18% Similarity=0.509 Sum_probs=29.8
Q ss_pred hhHHHHHHHHhhhccCcceeeeccHHHHHHHHHHHHHhc
Q psy5091 30 KCAEFTEALEKCGRDNGWKGVFTCRKENEKMKECMAHWY 68 (112)
Q Consensus 30 ~C~~~vk~Fa~C~k~~g~~~~~~CR~e~~amk~Cl~~~~ 68 (112)
-|...-.+|.+|-..++.- .-+|....++|.+|-.+||
T Consensus 6 PC~~~AcaiQ~CL~~N~yd-~skCq~~id~L~eCc~~~~ 43 (68)
T 1hp8_A 6 PCQKQACEIQKCLQANSYM-ESKCQAVIQELRKCCAQYP 43 (68)
T ss_dssp TTHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHc
Confidence 4888888888888877653 3488888888888888876
No 5
>2k3j_A Mitochondrial intermembrane space import and assembly protein 40; alpha-hairpin fold, coiled coil-helix-coiled coil-helix domain; NMR {Homo sapiens} PDB: 2l0y_A
Probab=63.72 E-value=4.5 Score=29.22 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=31.1
Q ss_pred hhHHHHHHHHhhhccCc-ceeeeccHHHHHHHHHHHHHh
Q psy5091 30 KCAEFTEALEKCGRDNG-WKGVFTCRKENEKMKECMAHW 67 (112)
Q Consensus 30 ~C~~~vk~Fa~C~k~~g-~~~~~~CR~e~~amk~Cl~~~ 67 (112)
-|..+.++...|..-.. -.-...|-++..+|.+||..|
T Consensus 67 PCG~eFreAfsCF~~S~~e~Kg~dC~e~F~~mq~Cm~~~ 105 (146)
T 2k3j_A 67 PCGEQFKSAFSCFHYSTEEIKGSDCVDQFRAMQECMQKY 105 (146)
T ss_dssp STHHHHHHHHHHHHHHCCSSTTTTTHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHhhccCccccccchHHHHHHHHHHHHHHC
Confidence 59999999999974322 344679999999999999987
No 6
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}
Probab=63.57 E-value=4 Score=32.52 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=31.8
Q ss_pred hhHHHHHHHHhhhccCc-ceeeeccHHHHHHHHHHHHHh
Q psy5091 30 KCAEFTEALEKCGRDNG-WKGVFTCRKENEKMKECMAHW 67 (112)
Q Consensus 30 ~C~~~vk~Fa~C~k~~g-~~~~~~CR~e~~amk~Cl~~~ 67 (112)
-|.++.++...|..-++ =.-...|.++..+|.+||..|
T Consensus 406 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 444 (465)
T 2zxt_A 406 PCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKY 444 (465)
T ss_dssp TTHHHHHHHHHHHHHCCSSSTTGGGHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHhhhcCccccccchHHHHHHHHHHHHHHC
Confidence 49999999999998543 334679999999999999976
No 7
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=57.00 E-value=7.7 Score=26.43 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=20.6
Q ss_pred HHHHHHHhhhHHHHHHHHhhhccCcceeeeccHHHHHHHHHHHH
Q psy5091 22 MRDIARTEKCAEFTEALEKCGRDNGWKGVFTCRKENEKMKECMA 65 (112)
Q Consensus 22 mrerar~e~C~~~vk~Fa~C~k~~g~~~~~~CR~e~~amk~Cl~ 65 (112)
|..-|+ .|.++..+|..|-..+.-.-.-+|-.+..++..|..
T Consensus 8 ~~~vak--~C~~~~~~f~~C~~~~~~~dp~~Cl~eg~~vt~Ca~ 49 (113)
T 2lql_A 8 LEVTAR--YCGRELEQYGQCVAAKPESWQRDCHYLKMSIAQCTS 49 (113)
T ss_dssp --------CCHHHHHHHHHHHHHCTTHHHHTCSHHHHHHHHHHH
T ss_pred HHHHHH--HccHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Confidence 334444 488888888888643322223345555555555543
No 8
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=44.23 E-value=19 Score=22.68 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.0
Q ss_pred eccHHHHHHHHHHHHHhcCCHH
Q psy5091 51 FTCRKENEKMKECMAHWYHNED 72 (112)
Q Consensus 51 ~~CR~e~~amk~Cl~~~~~d~e 72 (112)
=.|..+..++.+||..+-.|+.
T Consensus 5 dPC~~~AcaiQ~CL~~N~yd~s 26 (68)
T 1hp8_A 5 DPCQKQACEIQKCLQANSYMES 26 (68)
T ss_dssp CTTHHHHHHHHHHHHHTTTCHH
T ss_pred CchHHHHHHHHHHHHHcCCcHH
Confidence 3699999999999999976774
No 9
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=42.72 E-value=14 Score=23.44 Aligned_cols=21 Identities=33% Similarity=0.724 Sum_probs=19.3
Q ss_pred hhHHHHHHHHhhhccCcceee
Q psy5091 30 KCAEFTEALEKCGRDNGWKGV 50 (112)
Q Consensus 30 ~C~~~vk~Fa~C~k~~g~~~~ 50 (112)
.|.+.|+++-.|-++.||.+-
T Consensus 46 ~C~~lIeahk~CMr~~GF~v~ 66 (69)
T 1u96_A 46 KCKEFIEKYKECMKGYGFEVP 66 (69)
T ss_dssp GGHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHHHHHHcCCCCC
Confidence 799999999999999999863
No 10
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=42.58 E-value=22 Score=24.46 Aligned_cols=39 Identities=21% Similarity=0.458 Sum_probs=29.0
Q ss_pred eeeeccHHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHHHHHHHHhCC
Q psy5091 48 KGVFTCRKENEKMKECMAHWYHNEDFRKEVTEMY----LQQRTDYRKTGL 93 (112)
Q Consensus 48 ~~~~~CR~e~~amk~Cl~~~~~d~ef~ee~k~eY----l~eR~e~r~tgv 93 (112)
--+|.|..--..++ .||+.++...+.| ++.|..||+.|=
T Consensus 58 ~PiWsr~DD~~Lqk-------~D~~~R~qL~~KfG~enVAkRi~F~~~~~ 100 (111)
T 3k6g_A 58 YPIWSRQDDIDLQK-------DDEDTREALVKKFGAQNVARRIEFRKKGG 100 (111)
T ss_dssp CCCCCHHHHHHHTC-------CCHHHHHHHHHHHCHHHHHHHHHHHC---
T ss_pred CcceeeccHHHHhc-------CCHHHHHHHHHHHhhHHHHHHHHHHhcCC
Confidence 36799988766554 5999999888665 899999998873
No 11
>2x9q_A Cyclodipeptide synthetase; ligase; 2.02A {Mycobacterium tuberculosis}
Probab=28.04 E-value=1.8e+02 Score=22.94 Aligned_cols=74 Identities=16% Similarity=0.195 Sum_probs=46.9
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhccC-c-----ceeeeccHHHHHHHHHHHHHhcCCHHHH
Q psy5091 1 MGDPNDKTLRKLEKDVLIEQMMRDIARTEKCAEFTEALEKCGRDN-G-----WKGVFTCRKENEKMKECMAHWYHNEDFR 74 (112)
Q Consensus 1 ~gdp~d~~Lr~vE~dvlIpk~mrerar~e~C~~~vk~Fa~C~k~~-g-----~~~~~~CR~e~~amk~Cl~~~~~d~ef~ 74 (112)
+|.|..+--||+-+++ .+++. .|...|++ |..+. . ||-+-..-.-.....++...+.+||.|+
T Consensus 129 lG~~~~kA~rKarke~-------~r~rr-~ierAl~~---~~~~~~~~ri~~fSdf~~~p~Yr~l~~~v~~af~td~~FR 197 (289)
T 2x9q_A 129 LGDSAIEARRKAVKNI-------RGVRA-KITTTVNE---LDPAGARLCVRPMSEFQSNEAYRELHADLLTRLKDDEDMR 197 (289)
T ss_dssp TTCCHHHHHHHHHHHH-------HHHHH-HHHHHHHH---HCTTCSSEEEEEGGGGGGCHHHHHHHHHHHHHHHHCHHHH
T ss_pred cCCChHHHHHHHHHHH-------HHHHH-HHHHHHHH---hCCCccccceeeHHHhccCHHHHHHHHHHHHHHccCHHHH
Confidence 4555555555554443 11222 45555665 66654 2 3445566778888999999999999999
Q ss_pred HHHH---HHHHHHH
Q psy5091 75 KEVT---EMYLQQR 85 (112)
Q Consensus 75 ee~k---~eYl~eR 85 (112)
..|. ..-|+-|
T Consensus 198 ~aC~~Ms~~vL~~r 211 (289)
T 2x9q_A 198 AVCQDLVRRFLSTK 211 (289)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 9994 4455544
Done!