BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>psy5091
MGDPNDKTLRKLEKDVLIEQMMRDIARTEKCAEFTEALEKCGRDNGWKGVFTCRKENEKM
KECMAHWYHNEDFRKEVTEMYLQQRTDYRKTGLSKKMRKELESLGYEINIKS

High Scoring Gene Products

Symbol, full name Information P value
CMC1
COX assembly mitochondrial protein homolog
protein from Bos taurus 6.7e-17
CMC1
COX assembly mitochondrial protein homolog
protein from Homo sapiens 6.7e-17
CMC1
Uncharacterized protein
protein from Canis lupus familiaris 1.1e-16
Cmc1
COX assembly mitochondrial protein 1
protein from Mus musculus 1.8e-16
cmc1
COX assembly mitochondrial protein 1 homolog (S. cerevisiae)
gene_product from Danio rerio 2.0e-15
CMC1
COX assembly mitochondrial protein homolog
protein from Bos taurus 2.8e-11
Cmc1
COX assembly mitochondrial protein 1
gene from Rattus norvegicus 2.8e-11
CMC1
Copper-binding protein of the mitochondrial intermembrane space
gene from Saccharomyces cerevisiae 9.0e-06

The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy5091
        (112 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|Q3SZM6 - symbol:CMC1 "COX assembly mitochondria...   208  6.7e-17   1
UNIPROTKB|Q7Z7K0 - symbol:CMC1 "COX assembly mitochondria...   208  6.7e-17   1
UNIPROTKB|E2RLS9 - symbol:CMC1 "Uncharacterized protein" ...   206  1.1e-16   1
MGI|MGI:1915149 - symbol:Cmc1 "COX assembly mitochondrial...   204  1.8e-16   1
UNIPROTKB|F1P286 - symbol:CMC1 "Uncharacterized protein" ...   202  2.9e-16   1
ZFIN|ZDB-GENE-040426-2626 - symbol:cmc1 "COX assembly mit...   194  2.0e-15   1
UNIPROTKB|G5E5L4 - symbol:CMC1 "COX assembly mitochondria...   155  2.8e-11   1
RGD|1305283 - symbol:Cmc1 "COX assembly mitochondrial pro...   155  2.8e-11   1
SGD|S000001620 - symbol:CMC1 "Copper-binding protein of t...   103  9.0e-06   1


>UNIPROTKB|Q3SZM6 [details] [associations]
            symbol:CMC1 "COX assembly mitochondrial protein homolog"
            species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0046872 "metal ion binding" evidence=IEA] GO:GO:0005739
            GO:GO:0046872 EMBL:BC102785 IPI:IPI00687106 RefSeq:NP_001070016.1
            UniGene:Bt.48986 STRING:Q3SZM6 GeneID:767824 KEGG:bta:767824
            CTD:152100 eggNOG:NOG252149 HOGENOM:HOG000008534 HOVERGEN:HBG060799
            InParanoid:Q3SZM6 OrthoDB:EOG4VQ9QT NextBio:20918196
            InterPro:IPR013892 Pfam:PF08583 Uniprot:Q3SZM6
        Length = 106

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 40/96 (41%), Positives = 64/96 (66%)

Query:     3 DPNDKTLRKLEKDVLIEQMMRDIARTEKCAEFTEALEKCGRDNGWKGVFTCRKENEKMKE 62
             DP+++ LR +EKDVLI ++MR+ AR E+C+E  +   KC +D+G   V  CRKEN  +K+
Sbjct:     4 DPSEQHLRHVEKDVLIPKIMREKAR-ERCSEQVQDFTKCCKDSGVLMVVKCRKENSALKD 62

Query:    63 CMAHWYHNEDFRKEVTEMYLQQRTDYRKTGLSKKMR 98
             C+  +Y +  F +E    YL++R ++R+TG+  K R
Sbjct:    63 CLTSYYKDPAFYEECKMEYLKEREEFRRTGIPTKKR 98


>UNIPROTKB|Q7Z7K0 [details] [associations]
            symbol:CMC1 "COX assembly mitochondrial protein homolog"
            species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
            GO:GO:0005739 EMBL:CH471055 GO:GO:0046872 CTD:152100
            eggNOG:NOG252149 HOGENOM:HOG000008534 HOVERGEN:HBG060799
            OrthoDB:EOG4VQ9QT InterPro:IPR013892 Pfam:PF08583 EMBL:CR749370
            EMBL:BC052644 IPI:IPI00376478 RefSeq:NP_872329.1 UniGene:Hs.444724
            ProteinModelPortal:Q7Z7K0 STRING:Q7Z7K0 PhosphoSite:Q7Z7K0
            DMDM:74738888 PaxDb:Q7Z7K0 PRIDE:Q7Z7K0 DNASU:152100
            Ensembl:ENST00000466830 GeneID:152100 KEGG:hsa:152100
            UCSC:uc003cea.3 GeneCards:GC03P028283 HGNC:HGNC:28783 HPA:HPA043333
            neXtProt:NX_Q7Z7K0 PharmGKB:PA162382538 InParanoid:Q7Z7K0
            PhylomeDB:Q7Z7K0 ChiTaRS:CMC1 GenomeRNAi:152100 NextBio:86886
            ArrayExpress:Q7Z7K0 Bgee:Q7Z7K0 CleanEx:HS_CMC1
            Genevestigator:Q7Z7K0 Uniprot:Q7Z7K0
        Length = 106

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 41/96 (42%), Positives = 64/96 (66%)

Query:     3 DPNDKTLRKLEKDVLIEQMMRDIARTEKCAEFTEALEKCGRDNGWKGVFTCRKENEKMKE 62
             DP D+ LR +EKDVLI ++MR+ A+ E+C+E  +   KC +++G   V  CRKEN  +KE
Sbjct:     4 DPADQHLRHVEKDVLIPKIMREKAK-ERCSEQVQDFTKCCKNSGVLMVVKCRKENSALKE 62

Query:    63 CMAHWYHNEDFRKEVTEMYLQQRTDYRKTGLSKKMR 98
             C+  +Y++  F +E    YL++R ++RKTG+  K R
Sbjct:    63 CLTAYYNDPAFYEECKMEYLKEREEFRKTGIPTKKR 98


>UNIPROTKB|E2RLS9 [details] [associations]
            symbol:CMC1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
            GO:GO:0005739 CTD:152100 InterPro:IPR013892 Pfam:PF08583
            GeneTree:ENSGT00390000018696 OMA:IMREKAK EMBL:AAEX03013545
            RefSeq:XP_542752.1 Ensembl:ENSCAFT00000008853 GeneID:485633
            KEGG:cfa:485633 NextBio:20859587 Uniprot:E2RLS9
        Length = 106

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 41/96 (42%), Positives = 63/96 (65%)

Query:     3 DPNDKTLRKLEKDVLIEQMMRDIARTEKCAEFTEALEKCGRDNGWKGVFTCRKENEKMKE 62
             DP ++ LR +EKDVLI ++MR+ AR E+C+E  +   +C +D+G   V  CRKEN  +KE
Sbjct:     4 DPAEQHLRHVEKDVLIPKIMREKAR-ERCSEQVQDFTRCCKDSGILMVVKCRKENSALKE 62

Query:    63 CMAHWYHNEDFRKEVTEMYLQQRTDYRKTGLSKKMR 98
             C+   Y++  F +E    YL++R ++RKTG+  K R
Sbjct:    63 CLTAHYNDPAFYEECKMEYLKEREEFRKTGIPSKKR 98


>MGI|MGI:1915149 [details] [associations]
            symbol:Cmc1 "COX assembly mitochondrial protein 1"
            species:10090 "Mus musculus" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0008150
            "biological_process" evidence=ND] [GO:0046872 "metal ion binding"
            evidence=IEA] MGI:MGI:1915149 GO:GO:0005739 GO:GO:0046872
            CTD:152100 eggNOG:NOG252149 HOVERGEN:HBG060799 OrthoDB:EOG4VQ9QT
            InterPro:IPR013892 Pfam:PF08583 EMBL:AK020626 EMBL:AK168728
            EMBL:BC048547 EMBL:BC056653 IPI:IPI00885495 RefSeq:NP_080718.1
            UniGene:Mm.9953 STRING:Q9CPZ8 PhosphoSite:Q9CPZ8 PaxDb:Q9CPZ8
            PRIDE:Q9CPZ8 Ensembl:ENSMUST00000044220 GeneID:67899 KEGG:mmu:67899
            UCSC:uc009rzl.2 GeneTree:ENSGT00390000018696 InParanoid:Q9CPZ8
            OMA:IMREKAK NextBio:325894 Bgee:Q9CPZ8 Genevestigator:Q9CPZ8
            Uniprot:Q9CPZ8
        Length = 106

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 40/96 (41%), Positives = 64/96 (66%)

Query:     3 DPNDKTLRKLEKDVLIEQMMRDIARTEKCAEFTEALEKCGRDNGWKGVFTCRKENEKMKE 62
             DP ++ LR +EKDVLI +++R+ AR E+C+E  E   +C +D+G   V  CRKEN  +K+
Sbjct:     4 DPAEQHLRHVEKDVLIPKIIREKAR-ERCSEQVEDFTRCCKDSGILMVLKCRKENSALKD 62

Query:    63 CMAHWYHNEDFRKEVTEMYLQQRTDYRKTGLSKKMR 98
             C+  +Y++  F +E    YL++R ++RKTG+  K R
Sbjct:    63 CLTAYYNDPAFYEECKLEYLKEREEFRKTGVPTKKR 98


>UNIPROTKB|F1P286 [details] [associations]
            symbol:CMC1 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0005739 "mitochondrion" evidence=IEA] GO:GO:0005739
            InterPro:IPR013892 Pfam:PF08583 GeneTree:ENSGT00390000018696
            OMA:EECKQEY EMBL:AADN02001150 IPI:IPI00575681
            Ensembl:ENSGALT00000018635 Uniprot:F1P286
        Length = 98

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 42/95 (44%), Positives = 61/95 (64%)

Query:     5 NDKTLRKLEKDVLIEQMMRDIARTEKCAEFTEALEKCGRDNGWKGVFTCRKENEKMKECM 64
             N K LR +EKDVLI Q+MRD A+ E C++  +A  KC ++ G+  V  CR+EN  +K+C+
Sbjct:     1 NSK-LRHVEKDVLIPQIMRDRAK-ELCSDKVQAFTKCCKETGFLMVVKCREENTALKDCL 58

Query:    65 AHWYHNEDFRKEVTEMYLQQRTDYRKTGLSKKMRK 99
                Y +  F +E    YL+QR +YR TG+ KK +K
Sbjct:    59 VGHYADPSFYEECKAEYLKQREEYRATGIKKKRQK 93


>ZFIN|ZDB-GENE-040426-2626 [details] [associations]
            symbol:cmc1 "COX assembly mitochondrial protein 1
            homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
            ZFIN:ZDB-GENE-040426-2626 InterPro:IPR013892 Pfam:PF08583
            GeneTree:ENSGT00390000018696 EMBL:CABZ01080783 EMBL:CABZ01080784
            IPI:IPI00482312 Ensembl:ENSDART00000063129 Bgee:F1RD15
            Uniprot:F1RD15
        Length = 107

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 37/92 (40%), Positives = 60/92 (65%)

Query:     9 LRKLEKDVLIEQMMRDIARTEKCAEFTEALEKCGRDNGWKGVFTCRKENEKMKECMAHWY 68
             LR +E+DVLI +MMR+ A+ E+C +  +A   C +D+G+  VF CR+EN  +KEC+   Y
Sbjct:    11 LRHVERDVLIPKMMREKAK-ERCVQQVDAFNVCCKDSGFFMVFKCREENAALKECLTQHY 69

Query:    69 HNEDFRKEVTEMYLQQRTDYRKTGLSKKMRKE 100
              +  F +E  + YL+++  Y +TG+  K RK+
Sbjct:    70 RDPVFFEECKQEYLKEKLQYEQTGVPTKSRKQ 101


>UNIPROTKB|G5E5L4 [details] [associations]
            symbol:CMC1 "COX assembly mitochondrial protein homolog"
            species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
            GO:GO:0005739 InterPro:IPR013892 Pfam:PF08583
            GeneTree:ENSGT00390000018696 EMBL:DAAA02053472
            Ensembl:ENSBTAT00000025040 OMA:EECKQEY Uniprot:G5E5L4
        Length = 84

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 30/77 (38%), Positives = 48/77 (62%)

Query:    22 MRDIARTEKCAEFTEALEKCGRDNGWKGVFTCRKENEKMKECMAHWYHNEDFRKEVTEMY 81
             MR+ AR E+C+E  +   KC +D+G   V  CRKEN  +K+C+  +Y +  F +E    Y
Sbjct:     1 MREKAR-ERCSEQVQDFTKCCKDSGVLMVVKCRKENSALKDCLTSYYKDPAFYEECKMEY 59

Query:    82 LQQRTDYRKTGLSKKMR 98
             L++R ++R+TG+  K R
Sbjct:    60 LKEREEFRRTGIPTKKR 76


>RGD|1305283 [details] [associations]
            symbol:Cmc1 "COX assembly mitochondrial protein homolog (S.
            cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005739
            "mitochondrion" evidence=IEA] RGD:1305283 GO:GO:0005739
            EMBL:CH473954 OrthoDB:EOG4VQ9QT InterPro:IPR013892 Pfam:PF08583
            GeneTree:ENSGT00390000018696 IPI:IPI00991268 UniGene:Rn.60294
            Ensembl:ENSRNOT00000013467 UCSC:RGD:1305283 Uniprot:D3ZTN2
        Length = 84

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 30/77 (38%), Positives = 49/77 (63%)

Query:    22 MRDIARTEKCAEFTEALEKCGRDNGWKGVFTCRKENEKMKECMAHWYHNEDFRKEVTEMY 81
             MR+ AR E+C+E  E   +C +D+G   V  CRKEN  +K+C+  +Y++  F +E    Y
Sbjct:     1 MREKAR-ERCSEQVEDFTRCCKDSGILMVLKCRKENSALKDCLTAYYNDPAFYEECKLEY 59

Query:    82 LQQRTDYRKTGLSKKMR 98
             L++R ++R+TG+  K R
Sbjct:    60 LKEREEFRRTGVPTKKR 76


>SGD|S000001620 [details] [associations]
            symbol:CMC1 "Copper-binding protein of the mitochondrial
            intermembrane space" species:4932 "Saccharomyces cerevisiae"
            [GO:0033617 "mitochondrial respiratory chain complex IV assembly"
            evidence=IGI;IMP] [GO:0005758 "mitochondrial intermembrane space"
            evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
            evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
            [GO:0016020 "membrane" evidence=IEA] [GO:0005507 "copper ion
            binding" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0031314 "extrinsic to mitochondrial inner membrane"
            evidence=IDA] SGD:S000001620 GO:GO:0005758 GO:GO:0005507
            EMBL:BK006944 GO:GO:0031314 GO:GO:0033617 InterPro:IPR013892
            Pfam:PF08583 EMBL:Z28137 PIR:S37966 RefSeq:NP_012785.2
            ProteinModelPortal:P36064 DIP:DIP-4543N IntAct:P36064
            MINT:MINT-526915 STRING:P36064 PaxDb:P36064 PeptideAtlas:P36064
            EnsemblFungi:YKL137W GeneID:853721 KEGG:sce:YKL137W
            eggNOG:NOG257131 HOGENOM:HOG000111896 OMA:CLLFYQT OrthoDB:EOG40CMSN
            NextBio:974746 Genevestigator:P36064 GermOnline:YKL137W
            Uniprot:P36064
        Length = 111

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query:    19 EQMMRDIARTE---KCAEFTEALEKCGRDNGWKGVFTCRKENEKMKECMAHWYHNEDF 73
             EQ  R   +TE   KCA F +A+  C + NG K   TC K+ ++MK C+  +  +E +
Sbjct:    27 EQQARKNLKTETYKKCANFVQAMADCAKANGMKVFPTCDKQRDEMKSCLLFYQTDEKY 84


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      112       112   0.00091  102 3  11 22  0.48    30
                                                     29  0.43    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  576 (61 KB)
  Total size of DFA:  134 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.09u 0.09s 15.18t   Elapsed:  00:00:02
  Total cpu time:  15.09u 0.09s 15.18t   Elapsed:  00:00:02
  Start:  Thu Aug 15 11:35:44 2013   End:  Thu Aug 15 11:35:46 2013

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