RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5091
(112 letters)
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 0.30
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 13/80 (16%)
Query: 25 IARTEKCAEFTEALEKCGRDNGWKGVFTCR--KENEKMKECMAHWYHNEDFRKEVTEMYL 82
IA+ ++ + E++ K W+ R + + K W E +K++ E
Sbjct: 74 IAQADRLTQEPESIRK------WREEQRKRLQELDAASKVMEQEW--REKAKKDLEEWNQ 125
Query: 83 QQRTDYRKTGLSKKMRKELE 102
+Q K K + +
Sbjct: 126 RQSEQVEKN---KINNRIAD 142
>2qmc_B GGT, gamma-glutamyltranspeptidase; NTN-hydrolase, transferase; HET:
GTB; 1.55A {Helicobacter pylori} PDB: 2qm6_B* 2nqo_B*
3fnm_B*
Length = 188
Score = 27.6 bits (62), Expect = 0.67
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 81 YLQQRTDYRKTGLSKKMRKELESLGYEINIKS 112
+L K G+ ++ L +GY+I K
Sbjct: 128 WLPDELRIEKFGMPADVKDNLTKMGYQIVTKP 159
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 2.5
Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 31/108 (28%)
Query: 23 RDIARTEKCAEFTEALEKCGRDNGWKGVF-------------TCRKENEKMKECMA---H 66
+++R + + +AL + R + C + K++ M
Sbjct: 129 YNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCL--SYKVQCKMDFKIF 185
Query: 67 WYH--NEDFRKEVTEMYLQQRTDYRKTGLSKKMRKELESLG-YEINIK 111
W + N + + V EM LQ+ L ++ S + NIK
Sbjct: 186 WLNLKNCNSPETVLEM-LQK--------LLYQIDPNWTSRSDHSSNIK 224
>3g9k_S Capsule biosynthesis protein CAPD; CAPD protein, the great lakes
regional C excellence, GLRCE, capsule
biogenesis/degradation; HET: GLU; 1.79A {Bacillus
anthracis} PDB: 3ga9_S*
Length = 177
Score = 25.7 bits (57), Expect = 3.0
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 83 QQRTDYRKTGLSKKMRKELESLGYEINIKS 112
++ T Y + LS +++ EL G + K
Sbjct: 112 EKNTAYTEIQLSSEVKNELSRKGLNVKKKV 141
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics,
NPPSFA; NMR {Schizosaccharomyces pombe}
Length = 58
Score = 24.3 bits (53), Expect = 3.4
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 34 FTEALEKCGRDNGWKGVFTCRKENEKMKECMAHWY 68
+A E G N W + +EC H+
Sbjct: 20 LIDACETLGLGN-WADIADYVGNARTKEECRDHYL 53
>2v36_B Gamma-glutamyltranspeptidase small chain; transferase, glutathione
biosynthesis, gamma-glutamyl transferase,
acyltransferase, zymogen; 1.85A {Bacillus subtilis} PDB:
3a75_B*
Length = 193
Score = 25.3 bits (56), Expect = 4.3
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 91 TGLSKKMRKELESLGYEINIKS 112
G+ K + +L +G++
Sbjct: 126 DGVPKDVLSKLNGMGHKFGTSP 147
>3rnr_A Stage II sporulation E family protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans}
Length = 211
Score = 25.3 bits (56), Expect = 5.1
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 18 IEQMMRDIARTEKCAEFTEALEKCGRDN 45
I + + + EA + +DN
Sbjct: 176 IAMALSRGSDARGILQEVEAQGRPYQDN 203
>2dg5_B Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT,
gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli
K12} SCOP: d.153.1.6 PDB: 2dbu_B 2dbw_B* 2dbx_B* 2e0x_B
2e0y_B 2z8i_B* 2z8j_B* 2z8k_B*
Length = 190
Score = 25.3 bits (56), Expect = 5.2
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 91 TGLSKKMRKELESLGYEINIKS 112
G S K LE+ G ++ +K
Sbjct: 137 KGFSPDTLKLLEAKGQKVALKE 158
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane
space import AND...; disulfide bond, alpha helix,
fusion, sugar transport; HET: MAL; 3.00A {Escherichia
coli}
Length = 465
Score = 25.2 bits (55), Expect = 5.8
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 37 ALEKCGRDNGWKGVFTC---RKENEKMKECMAHWYHNEDFRKEVTEMYLQQRTD 87
A CG + +K F+C + K +C+ + H +D ++ E Y +Q +
Sbjct: 403 AHGPCGEE--FKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQLKE 454
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 25.0 bits (54), Expect = 6.3
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 38 LEKCGRDNGWKGVFTCRKENEKMKECMAHWYHNEDFRKEVTEMYLQQRTDYRKTGLSKKM 97
L + + GWK EK KE Y RK+ M L+++ + K
Sbjct: 138 LGRLAHEVGWKYQAVTATLEEKRKEKAKIHY-----RKKKQLMRLRKQAEKNVEKKIDKY 192
Query: 98 RKELESLGYEI 108
+ L++ G +
Sbjct: 193 TEVLKTHGLLV 203
>3bnw_A Riboflavin kinase, putative; APO structure, structural genomics,
structural genomics of P protozoa consortium, SGPP,
transferase; 2.40A {Trypanosoma brucei}
Length = 181
Score = 25.0 bits (55), Expect = 6.7
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 15 DVLIEQMMRDIARTEK 30
L++ + D+ T
Sbjct: 134 QALVDTIKSDVQFTRD 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.393
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,753,883
Number of extensions: 91930
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 31
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)