RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5091
         (112 letters)



>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA,
           nucleotide-binding domains {Bacillus subtilis [TaxId:
           1423]}
          Length = 273

 Score = 26.8 bits (59), Expect = 0.51
 Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 11/99 (11%)

Query: 3   DPNDKTLRKLEKDV-----LIEQM--MRDIARTEKCAEFTEALEKCGRDNGWKGVFTCRK 55
           DP  +TL + EK       +      + D A   K  EF E LEK    +          
Sbjct: 10  DPTKRTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGATTDDLLVEAFAVV 69

Query: 56  ENEKMKECMAHWYHNEDFRKEVT---EMYLQQRTDYRKT 91
                +     +         V        + +T   KT
Sbjct: 70  REA-SRRVTGMFPFKVQLMGGVALHDGNIAEMKTGEGKT 107


>g2nqo.1 d.153.1.6 (A:29-375,B:380-565)
           Gamma-glutamyltranspeptidase, GGT {Helicobacter pylori
           [TaxId: 210]}
          Length = 533

 Score = 25.3 bits (54), Expect = 2.1
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 81  YLQQRTDYRKTGLSKKMRKELESLGYEINIKS 112
           +L       K G+   ++  L  +GY+I  K 
Sbjct: 475 WLPDELRIEKFGMPADVKDNLTKMGYQIVTKP 506


>g2dg5.1 d.153.1.6 (A:37-387,B:391-580)
           Gamma-glutamyltranspeptidase, GGT {Escherichia coli
           [TaxId: 562]}
          Length = 541

 Score = 24.4 bits (52), Expect = 3.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 92  GLSKKMRKELESLGYEINIKS 112
           G S    K LE+ G ++ +K 
Sbjct: 489 GFSPDTLKLLEAKGQKVALKE 509


>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
           (Homo sapiens), ubc9 [TaxId: 9606]}
          Length = 156

 Score = 23.6 bits (50), Expect = 5.6
 Identities = 10/48 (20%), Positives = 20/48 (41%)

Query: 44  DNGWKGVFTCRKENEKMKECMAHWYHNEDFRKEVTEMYLQQRTDYRKT 91
           D  W+   T ++    ++E +      +  + E   +Y Q R +Y K 
Sbjct: 98  DKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKR 145


>d2nlza1 d.153.1.6 (A:3-539) Cephalosporin acylase {Bacillus
           halodurans [TaxId: 86665]}
          Length = 537

 Score = 24.1 bits (51), Expect = 6.4
 Identities = 3/19 (15%), Positives = 8/19 (42%)

Query: 92  GLSKKMRKELESLGYEINI 110
                + + L   G++I +
Sbjct: 482 TFPVDIAQALVRRGHKIQV 500


>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 231

 Score = 23.3 bits (49), Expect = 8.0
 Identities = 12/94 (12%), Positives = 25/94 (26%)

Query: 7   KTLRKLEKDVLIEQMMRDIARTEKCAEFTEALEKCGRDNGWKGVFTCRKENEKMKECMAH 66
           K  +K+  D    +M  ++A  ++   F   + +     G+ GV+            +  
Sbjct: 15  KEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDT 74

Query: 67  WYHNEDFRKEVTEMYLQQRTDYRKTGLSKKMRKE 100
               E      T              +      E
Sbjct: 75  SVIFEALATGCTSTTAYISIHNMCAWMIDSFGNE 108


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0458    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 443,667
Number of extensions: 19211
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 18
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.6 bits)