Query psy5092
Match_columns 291
No_of_seqs 159 out of 736
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 17:06:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01875 Memo: Memo-like prote 100.0 1.4E-64 3.1E-69 470.3 16.0 238 37-282 1-246 (276)
2 COG1355 Predicted dioxygenase 100.0 2.1E-62 4.5E-67 449.6 20.5 234 33-281 1-246 (279)
3 KOG3086|consensus 100.0 3.9E-61 8.4E-66 432.5 17.6 220 34-253 4-223 (296)
4 cd07361 MEMO_like Memo (mediat 100.0 3.5E-60 7.7E-65 437.7 21.9 234 37-283 1-236 (266)
5 PRK00782 hypothetical protein; 100.0 2.9E-60 6.2E-65 439.6 20.8 231 35-282 2-234 (267)
6 cd07320 Extradiol_Dioxygenase_ 100.0 5.2E-32 1.1E-36 247.8 13.9 204 72-282 2-237 (260)
7 cd07365 MhpB_like Subunit B of 99.9 5.1E-26 1.1E-30 215.1 13.8 157 96-257 40-260 (310)
8 cd07951 ED_3B_N_AMMECR1 The N- 99.9 1.8E-25 4E-30 204.8 15.2 177 97-281 37-233 (256)
9 PRK03881 hypothetical protein; 99.9 5.4E-24 1.2E-28 211.3 16.3 204 71-282 5-248 (467)
10 cd07952 ED_3B_like Uncharacter 99.9 1.2E-23 2.6E-28 193.8 14.7 199 72-282 2-234 (256)
11 PRK13358 protocatechuate 4,5-d 99.9 1.4E-22 3.1E-27 187.6 14.0 178 72-256 7-220 (269)
12 cd07359 PCA_45_Doxase_B_like S 99.9 8.9E-22 1.9E-26 182.2 14.4 163 89-257 31-224 (271)
13 PRK13370 mhpB 3-(2,3-dihydroxy 99.9 1.4E-21 3E-26 185.2 13.2 158 97-258 41-261 (313)
14 PRK13364 protocatechuate 4,5-d 99.8 2.3E-18 4.9E-23 160.9 13.6 164 88-256 34-228 (278)
15 cd07370 HPCD The Class III ext 99.8 1.3E-17 2.7E-22 155.6 15.9 185 89-280 32-251 (280)
16 cd07368 PhnC_Bs_like PhnC is a 99.7 3.1E-17 6.6E-22 153.1 13.9 183 72-257 7-230 (277)
17 cd07372 2A5CPDO_B The beta sub 99.7 4.6E-17 9.9E-22 153.2 15.2 184 71-260 5-246 (294)
18 TIGR02298 HpaD_Fe 3,4-dihydrox 99.7 6.3E-17 1.4E-21 151.4 15.5 184 87-280 32-253 (282)
19 cd07367 CarBb CarBb is the B s 99.7 9.9E-17 2.1E-21 149.0 13.8 178 72-257 7-221 (268)
20 cd07950 Gallate_Doxase_N The N 99.7 5.7E-17 1.2E-21 151.4 11.4 183 72-258 7-231 (277)
21 cd07373 2A5CPDO_A The alpha su 99.7 1.2E-16 2.6E-21 148.5 13.0 176 72-252 6-220 (271)
22 cd07371 2A5CPDO_AB The alpha a 99.7 3E-16 6.5E-21 145.7 13.9 199 72-279 3-241 (268)
23 cd07949 PCA_45_Doxase_B_like_1 99.7 1.6E-16 3.5E-21 148.3 11.6 163 89-256 35-228 (276)
24 PRK13365 protocatechuate 4,5-d 99.7 2.9E-16 6.3E-21 146.8 13.2 169 86-258 32-231 (279)
25 PRK13363 protocatechuate 4,5-d 99.7 3.7E-16 8E-21 149.4 12.9 151 96-257 86-283 (335)
26 cd07369 PydA_Rs_like PydA is a 99.7 4.3E-16 9.4E-21 148.6 13.0 158 96-258 44-283 (329)
27 PRK13366 protocatechuate 4,5-d 99.6 2E-15 4.4E-20 141.5 12.9 158 96-257 46-230 (284)
28 cd07362 HPCD_like Class III ex 99.6 7.1E-15 1.5E-19 136.9 13.8 182 89-279 30-247 (272)
29 cd07364 PCA_45_Dioxygenase_B S 99.6 5.3E-15 1.1E-19 138.2 11.9 156 96-255 46-228 (277)
30 cd07366 3MGA_Dioxygenase Subun 99.6 7.7E-15 1.7E-19 140.1 12.2 168 96-279 84-296 (328)
31 PF02900 LigB: Catalytic LigB 99.6 1.2E-15 2.6E-20 141.0 2.9 188 72-264 2-235 (272)
32 PRK13367 protocatechuate 4,5-d 99.5 7.8E-14 1.7E-18 136.4 13.4 158 96-258 46-231 (420)
33 cd07363 45_DOPA_Dioxygenase Th 99.5 1.1E-13 2.3E-18 127.6 13.3 172 73-250 3-200 (253)
34 PRK13373 putative dioxygenase; 99.4 8.5E-13 1.8E-17 125.7 12.0 158 96-258 44-283 (344)
35 PRK13372 pcmA protocatechuate 99.3 2E-11 4.3E-16 120.0 13.6 163 96-265 193-384 (444)
36 COG3885 Uncharacterized conser 99.2 4.1E-11 8.9E-16 108.2 9.3 184 72-263 5-221 (261)
37 COG3384 Aromatic ring-opening 98.7 1.7E-07 3.6E-12 86.9 12.1 169 87-263 28-225 (268)
38 PRK10628 LigB family dioxygena 98.3 2.5E-05 5.4E-10 72.3 14.8 107 131-244 66-183 (246)
39 PF06057 VirJ: Bacterial virul 63.0 17 0.00036 32.7 5.3 37 78-114 73-112 (192)
40 COG4148 ModC ABC-type molybdat 34.6 20 0.00044 34.6 1.3 55 164-224 167-228 (352)
41 TIGR02221 cas_TM1812 CRISPR-as 32.1 1.8E+02 0.0039 26.6 7.0 97 98-221 45-143 (218)
42 KOG2616|consensus 30.9 43 0.00093 31.1 2.7 65 72-144 169-238 (266)
43 TIGR00719 sda_beta L-serine de 28.1 1.1E+02 0.0024 27.3 4.9 43 179-221 7-54 (208)
44 PF14112 DUF4284: Domain of un 27.9 19 0.00041 29.7 -0.1 12 4-15 1-12 (122)
45 KOG4126|consensus 27.0 88 0.0019 32.3 4.4 39 193-231 369-410 (529)
46 cd07370 HPCD The Class III ext 25.9 3.5E+02 0.0075 25.2 8.0 45 124-170 88-134 (280)
47 PF05651 Diacid_rec: Putative 20.9 2.9E+02 0.0063 23.1 5.8 34 190-223 2-41 (135)
No 1
>PF01875 Memo: Memo-like protein; InterPro: IPR002737 This entry contains proteins from all branches of life. The molecular function of these proteins are unknown, but Memo (mediator of ErbB2-driven cell motility) a human protein is included in this family []. It has been suggested that Memo controls cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton [].; PDB: 3BD0_C 3BCZ_C.
Probab=100.00 E-value=1.4e-64 Score=470.26 Aligned_cols=238 Identities=35% Similarity=0.480 Sum_probs=176.7
Q ss_pred CcCccCcccCCCHHHHHHHHHHHhhhccCCCCCceEEEccCCcccccHHHHHHHHHhhCCCCCCEEEEECCCCCCCCCce
Q psy5092 37 LSNHLRFKCSKQTKELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPSHYYQLGGC 116 (291)
Q Consensus 37 ~~a~AG~fYP~~~~eL~~~l~~~l~~~~~~~~~~~aiIvPHAGy~ySG~~Aa~ay~~l~~~~p~~VVILGP~H~~~~~g~ 116 (291)
+|+|||+|||+|+++|+++|+.|+++...+. +++|+|+|||||+|||++||++|+.|+..+++|||||||||++.++++
T Consensus 1 ~pa~AG~fYp~~~~~L~~~l~~~~~~~~~~~-~~~~iI~PHAGy~ySG~~aa~ay~~l~~~~~~~vvilGpsH~~~~~~~ 79 (276)
T PF01875_consen 1 EPAVAGSFYPADPEELRAQLEAFLEKAPGPG-PARAIIVPHAGYVYSGPTAAHAYAALKESKPKRVVILGPSHTGYGDGI 79 (276)
T ss_dssp --TTTTTSS-S-HHHHHHHHH-HHHHTS----S-SEEEE--S-HHHHHHHHHHHHTT--TTT--EEEEEEE-SSS--SSE
T ss_pred CCCcccCCCCCCHHHHHHHHHHHHhcCCCCC-CCCEEECCCccHHhHHHHHHHHHHHHhhcCCCEEEEECCCccCCCCCe
Confidence 5899999999999999999999998665433 389999999999999999999999999888999999999999999999
Q ss_pred eecCCCccccCCCCCCCcHHHHHHHHhcCCcccccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcCCCCHHHHHH
Q psy5092 117 ALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSLSTGREAE 196 (291)
Q Consensus 117 al~~~~~~~TPLG~v~vD~el~~~L~~~~~~~~~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg~~~~~~~~~ 196 (291)
++++.+.|+||||++++|++++++|.+..++...++.+|..|||+|||||||||++++. ++++||||+||..+.+.+++
T Consensus 80 ~~~~~~~~~TPlG~v~vD~e~~~~L~~~~~~~~~~~~~h~~EHSlEvqlPFLq~~~~~~-~~~~IVPI~vg~~~~~~~~~ 158 (276)
T PF01875_consen 80 AVSPFDSWETPLGEVPVDSELAEELAKNFPFFEFDDEAHEEEHSLEVQLPFLQYLFPDR-RDFKIVPILVGDQSPETAKE 158 (276)
T ss_dssp EE-SSSEE--SS--EEB-HHHHHHHHHTT-E-EE--HHHHH--TTGGGHHHHHHHTGGG-TS-EEEEEEE-S--HHHHHH
T ss_pred EeccCCeEECCCcccccCHHHHHHHHhcCCCcccchhhccccCcEEEHHHHHHHHhccC-CceEEEEEEecCCCHHHHHH
Confidence 99999999999999999999999999987776678889999999999999999999321 13999999999999999999
Q ss_pred HHHHHHhhhcCCCeEEEEecCCcccCcCcccccCCc-----c---hHHHHHHHHhcChhchhhhhhhhhccccccCCCCC
Q psy5092 197 YGRIFAPYLADPRNLFVISSDFCHWGDRFRFTYYDS-----A---YGEIHQSIEALDRKSPSSSINRVYSILISRGPSDE 268 (291)
Q Consensus 197 lg~~L~~~~~~~~~liVaSsDLSH~g~~~gy~p~~~-----~---D~~iie~I~~lD~~~l~~~~~~~~~~~~~~~~~~~ 268 (291)
+|++|.+++++++++||+||||||||++||+.+... . |+..+++|+++|++++.+.++++.+. .| |
T Consensus 159 ~a~~L~~~~~~~~~liV~SsD~sHyg~rfg~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~t--~C----G 232 (276)
T PF01875_consen 159 LAEALAEYLKDEGTLIVASSDFSHYGPRFGDAPKPEEIAEKIEALDREAIEAIEALDPEGFYEYLKETNNT--AC----G 232 (276)
T ss_dssp HHHHHHHHHTSTTEEEEEE----EEBGGGT--GGGSSHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH------T----T
T ss_pred HHHHHHHHHcCCCEEEEEeCccccccccccCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHcCCc--ee----c
Confidence 999999999988899999999999999999876442 2 99999999999999999999998877 89 8
Q ss_pred cchhhHHHHhhcCc
Q psy5092 269 EGHGLSLMEILKPQ 282 (291)
Q Consensus 269 ~~~~~~~~~~~~~~ 282 (291)
.|.+..+|+++|..
T Consensus 233 ~~pi~~~l~~~~~~ 246 (276)
T PF01875_consen 233 RGPIAVLLEAAKAL 246 (276)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHc
Confidence 99999999998753
No 2
>COG1355 Predicted dioxygenase [General function prediction only]
Probab=100.00 E-value=2.1e-62 Score=449.62 Aligned_cols=234 Identities=27% Similarity=0.364 Sum_probs=211.8
Q ss_pred CCccCcCccCcccCCCHHHHHHHHHHHhhh-ccC----CC---CCceEEEccCCcccccHHHHHHHHHhhCCCCCCEEEE
Q psy5092 33 PCYKLSNHLRFKCSKQTKELDKQLGNWLNN-AEL----SH---GPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFI 104 (291)
Q Consensus 33 ~~iR~~a~AG~fYP~~~~eL~~~l~~~l~~-~~~----~~---~~~~aiIvPHAGy~ySG~~Aa~ay~~l~~~~p~~VVI 104 (291)
+.+|+|+|||+|||+++++|.++|+.|+-. .++ .+ .+++|+|+|||||+|||+||++.|+++...+|+||||
T Consensus 1 m~iR~pavAG~fYp~~~eeL~~~i~~~~~~~~~p~~l~~~~~~~~~~~~v~PHAGy~ySG~taa~~y~~l~~~~~~~vVI 80 (279)
T COG1355 1 MKIREPAVAGQFYPSDPEELLKQIESFFGHNFGPGTLPETGFDRKAIGIVVPHAGYRYSGPTAAHVYSALDEGEPDTVVI 80 (279)
T ss_pred CCccccceeeeeccCCHHHHHHHHHhhhcccCCCCCCCcccccccceEEEcCCCCcEecchhHHHHHHHhhcCCCCEEEE
Confidence 468999999999999999999999998632 111 11 3689999999999999999999999998889999999
Q ss_pred ECCCCCCCCCceeecCCCccccCCCCCCCcHHHHHHHHhcCCcccccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEE
Q psy5092 105 LGPSHYYQLGGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPV 184 (291)
Q Consensus 105 LGP~H~~~~~g~al~~~~~~~TPLG~v~vD~el~~~L~~~~~~~~~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI 184 (291)
|||||++.+..+++++.++|+||||++++|.|++++|.+..++...|+.+|..|||+|||||||||+|+ ++||||||
T Consensus 81 lGPnHtg~g~~vsv~~~g~w~TPLG~v~vD~e~~~~l~~~~~~~~~D~~ah~~EHSiEvQlPFLqy~f~---~~fKIVPi 157 (279)
T COG1355 81 LGPNHTGLGSPVSVSPEGEWETPLGDVKVDSELAEELVKHSGIIDLDELAHLYEHSIEVQLPFLQYLFG---DEFKIVPI 157 (279)
T ss_pred ECCCCCCCCCceEEecCCccccCCCCeeeCHHHHHHHHHhcCCCCchhhhhhhhceEEeehHHHHHHcc---CCcEEEeE
Confidence 999999999999999999999999999999999999999877777889999999999999999999993 48999999
Q ss_pred EcCCCCHHHHHHHHHHHHhhhcCC-CeEEEEecCCcccCcCcccccCC---cchHHHHHHHHhcChhchhhhhhhhhccc
Q psy5092 185 MVGSLSTGREAEYGRIFAPYLADP-RNLFVISSDFCHWGDRFRFTYYD---SAYGEIHQSIEALDRKSPSSSINRVYSIL 260 (291)
Q Consensus 185 ~vg~~~~~~~~~lg~~L~~~~~~~-~~liVaSsDLSH~g~~~gy~p~~---~~D~~iie~I~~lD~~~l~~~~~~~~~~~ 260 (291)
+++.++.+.++++|++|.+++++. +++||+||||||| .|.+ ++|+.+|++|+++|.++|+..+.++...
T Consensus 158 ~m~~q~~~~a~~ig~~i~k~i~e~~~~liIaSSDf~HY------ep~~~~~~~D~~~I~~I~~~d~~g~~~~~~~~n~t- 230 (279)
T COG1355 158 CMGMQDKEVARDIGRAIAKVIKELGDALIIASSDFTHY------EPQDIVRRKDRILIKAILALDLDGFYELLERTNAT- 230 (279)
T ss_pred EEecccHHHHHHHHHHHHHHHhhcCCeEEEEecCcccc------CchhhhhhhHHHHHHHHHhcCHHHHHHHHHhcCCc-
Confidence 999999999999999999999854 6999999999998 4443 4699999999999999999999988777
Q ss_pred cccCCCCCcchhhHHHHhhcC
Q psy5092 261 ISRGPSDEEGHGLSLMEILKP 281 (291)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~ 281 (291)
.| |.|-++.+|+..|-
T Consensus 231 -~C----G~gpi~~~l~~~k~ 246 (279)
T COG1355 231 -MC----GYGPIAVLLEASKK 246 (279)
T ss_pred -cc----cccHHHHHHHHHHH
Confidence 78 88999999998763
No 3
>KOG3086|consensus
Probab=100.00 E-value=3.9e-61 Score=432.50 Aligned_cols=220 Identities=52% Similarity=0.912 Sum_probs=206.0
Q ss_pred CccCcCccCcccCCCHHHHHHHHHHHhhhccCCCCCceEEEccCCcccccHHHHHHHHHhhCCCCCCEEEEECCCCCCCC
Q psy5092 34 CYKLSNHLRFKCSKQTKELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPSHYYQL 113 (291)
Q Consensus 34 ~iR~~a~AG~fYP~~~~eL~~~l~~~l~~~~~~~~~~~aiIvPHAGy~ySG~~Aa~ay~~l~~~~p~~VVILGP~H~~~~ 113 (291)
++|+|+|||+||.+++.+|.+||+.||.++++..+.+||||+|||||.|||++||+||+.+++++.+||+||||+|++++
T Consensus 4 r~~~AtHAGSWYt~~~~~Ls~QL~~wL~~~~~~~~paRaiIaPHAGY~YcG~~Aa~ay~qvdps~v~RIFILGPSHHv~l 83 (296)
T KOG3086|consen 4 RVVEATHAGSWYTASGPQLSAQLEGWLSQVTLTKGPARAIIAPHAGYTYCGSCAAYAYKQVDPSNVQRIFILGPSHHVYL 83 (296)
T ss_pred cccccccccccccCCHHHHHHHHHHHHhccCCCCCCceEEEcCCCCcccchHHHHHHHhhcChhHeeEEEEecCcceeee
Confidence 45699999999999999999999999999887777799999999999999999999999999999999999999999999
Q ss_pred CceeecCCCccccCCCCCCCcHHHHHHHHhcCCcccccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcCCCCHHH
Q psy5092 114 GGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSLSTGR 193 (291)
Q Consensus 114 ~g~al~~~~~~~TPLG~v~vD~el~~~L~~~~~~~~~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg~~~~~~ 193 (291)
++|+++..+.++||||+++||.++.++|.+...|..+|-..++.|||+|||||||.+.+++.+..++||||+||.++.++
T Consensus 84 ~~CalS~~s~yrTPLgdLkVD~~i~~eL~~tg~F~~Mdl~tde~EHSiEM~lP~lak~l~~~~~~~kivPilvg~ls~~~ 163 (296)
T KOG3086|consen 84 SKCALSSASIYRTPLGDLKVDQKICKELWATGMFERMDLDTDEAEHSIEMQLPYLAKVLESRKDTVKIVPILVGALSPSV 163 (296)
T ss_pred cchhhhhhhhhcCccccccccHHHHHHHHHcCCccccccccccchhhhhhhhHHHHHHHhhcCceEEEEeeEecccChHH
Confidence 99999999999999999999999999999999999999889999999999999999999874456999999999999999
Q ss_pred HHHHHHHHHhhhcCCCeEEEEecCCcccCcCcccccCCcchHHHHHHHHhcChhchhhhh
Q psy5092 194 EAEYGRIFAPYLADPRNLFVISSDFCHWGDRFRFTYYDSAYGEIHQSIEALDRKSPSSSI 253 (291)
Q Consensus 194 ~~~lg~~L~~~~~~~~~liVaSsDLSH~g~~~gy~p~~~~D~~iie~I~~lD~~~l~~~~ 253 (291)
...+|+.|.++++|++++||+||||||||.||+|++|+..-.+|.+.|++||..||..+.
T Consensus 164 e~~~g~lls~Yi~Dp~NlFvvSSDFCHWG~RF~yt~Yd~s~~~I~~sIe~lDk~gM~iie 223 (296)
T KOG3086|consen 164 EQCYGKLLSKYIKDPSNLFVVSSDFCHWGRRFSYTYYDHSQGPIYESIENLDKQGMKIIE 223 (296)
T ss_pred HHHHHHHHHHHhcCccceEEEeccccccccccccccccCCCchHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999999999987777788888888877776543
No 4
>cd07361 MEMO_like Memo (mediator of ErbB2-driven cell motility) is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. This subfamily is composed of Memo (mediator of ErbB2-driven cell motility) and similar proteins. Memo is a protein that is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. It is required for the ErbB2-driven cell mobility and is found in protein complexes with cofilin, ErbB2 and PLCgamma1. However, Memo is not homologous to any known signaling proteins, and its function in ErbB2 signaling is not known. Structural studies show that Memo binds directly to a specific ErbB2-derived phosphopeptide. Memo is homologous to class III nonheme iron-dependent extradiol dioxygenases, however, no metal binding or enzymatic activity can be detected for Memo. This subfamily also contains a few members containing a C-terminal AMMECR1-like domain. The AMMECR1 protein was proposed to be a regulatory factor that is potentia
Probab=100.00 E-value=3.5e-60 Score=437.70 Aligned_cols=234 Identities=35% Similarity=0.488 Sum_probs=214.4
Q ss_pred CcCccCcccCCCHHHHHHHHHHHhhhccC--CCCCceEEEccCCcccccHHHHHHHHHhhCCCCCCEEEEECCCCCCCCC
Q psy5092 37 LSNHLRFKCSKQTKELDKQLGNWLNNAEL--SHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPSHYYQLG 114 (291)
Q Consensus 37 ~~a~AG~fYP~~~~eL~~~l~~~l~~~~~--~~~~~~aiIvPHAGy~ySG~~Aa~ay~~l~~~~p~~VVILGP~H~~~~~ 114 (291)
+|+|||+|||+|+++|+++|+.|+++.+. ...+++|+|+|||||+|||++||++|+.|+..+||+||||||+|+..+.
T Consensus 1 ~~~~AG~fYp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~PHagy~ysG~~aa~ay~~l~~~~p~~vvilgP~H~~~~~ 80 (266)
T cd07361 1 PPAVAGSFYPADPEELRRQLEAFLAAAPGPPPKEPPKAIIVPHAGYVYSGPVAAHAYAALDPGKPKRVVILGPSHTGYGR 80 (266)
T ss_pred CCCccCCCCCCCHHHHHHHHHHHHHhCcccCCCCCceEEEeCCCCccccHHHHHHHHHHhccCCCCEEEEECCCCCCCCC
Confidence 58999999999999999999999987664 4568999999999999999999999999988889999999999999999
Q ss_pred ceeecCCCccccCCCCCCCcHHHHHHHHhcCCcccccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcCCCCHHHH
Q psy5092 115 GCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSLSTGRE 194 (291)
Q Consensus 115 g~al~~~~~~~TPLG~v~vD~el~~~L~~~~~~~~~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg~~~~~~~ 194 (291)
++++++.+.|+||||++++|++++++|.+..++...+..+|..|||+||||||||+.+ ++++||||++|.++.+.+
T Consensus 81 ~~~~~~~~~~~TPlG~v~vd~~l~~~L~~~~~~~~~~~~~~~~EHs~EvqLpfLq~~~----~~~~iVPi~vg~~~~~~~ 156 (266)
T cd07361 81 GCALSSAGAWETPLGDVPVDRELVEELLKLGGFIVDDELAHEEEHSLEVQLPFLQYLL----PDFKIVPILVGDQSPEAA 156 (266)
T ss_pred ceeeCCCCCeeCCCcCCccCHHHHHHHHhcCCccccCcchhhhhceeeeHHHHHHHHc----CCCeEEEEEeCCCCHHHH
Confidence 9999999999999999999999999999988887777789999999999999999999 799999999999999999
Q ss_pred HHHHHHHHhhhcCCCeEEEEecCCcccCcCcccccCCcchHHHHHHHHhcChhchhhhhhhhhccccccCCCCCcchhhH
Q psy5092 195 AEYGRIFAPYLADPRNLFVISSDFCHWGDRFRFTYYDSAYGEIHQSIEALDRKSPSSSINRVYSILISRGPSDEEGHGLS 274 (291)
Q Consensus 195 ~~lg~~L~~~~~~~~~liVaSsDLSH~g~~~gy~p~~~~D~~iie~I~~lD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (291)
+++|++|+++..+++++||+|||||||+++.. ...+|+.++++|+++|.+++++.+.++. .-.| |.|.+..
T Consensus 157 ~~~g~~l~~~~~~~~~~iV~SsDlSH~~~~~~---a~~~D~~~i~~i~~~d~~~~~~~~~~~~--~~~C----G~~~i~~ 227 (266)
T cd07361 157 EALAEALSKYLLDPDTLIVISSDFSHYGPRES---AERLDRKAIEAILALDPEGFYEYLRETG--NTAC----GRGPIAV 227 (266)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCCCCcCCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHhcC--CceE----CHHHHHH
Confidence 99999999986789999999999999977611 2347999999999999999999999885 4567 8899999
Q ss_pred HHHhhcCcc
Q psy5092 275 LMEILKPQI 283 (291)
Q Consensus 275 ~~~~~~~~~ 283 (291)
+|.+++...
T Consensus 228 ~l~~~~~~~ 236 (266)
T cd07361 228 LLEAAKELG 236 (266)
T ss_pred HHHHHHhcC
Confidence 999998753
No 5
>PRK00782 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-60 Score=439.55 Aligned_cols=231 Identities=23% Similarity=0.333 Sum_probs=204.3
Q ss_pred ccCcCccCcccCCCHHHHHHHHHHHhhhccCCCCCceEEEccCCcccccHHHHHHHHHhhCCCCCCEEEEECCCCCCCCC
Q psy5092 35 YKLSNHLRFKCSKQTKELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPSHYYQLG 114 (291)
Q Consensus 35 iR~~a~AG~fYP~~~~eL~~~l~~~l~~~~~~~~~~~aiIvPHAGy~ySG~~Aa~ay~~l~~~~p~~VVILGP~H~~~~~ 114 (291)
+|+|+|||+|||+|+++|+++|+.|+++.+..+.+++|+|||||||+|||++||++|+.+.. |++||||||||+++++
T Consensus 2 ~R~~~~AG~fYp~~~~~L~~~i~~~~~~~~~~~~~~~~ii~PHAGy~ySG~~aa~ay~~l~~--p~~vvilGp~H~~~~~ 79 (267)
T PRK00782 2 MRYPAVAGQFYPLSPEELLKMLSEFFRDLGEESRKIIGAVVPHAGYVYSGRTAARVYAALPE--AETFVIIGPNHTGLGS 79 (267)
T ss_pred ccCccccCCCCCCCHHHHHHHHHHHHhhCCCCCCCceEEEeCCCCCcccHHHHHHHHHhcCC--CCEEEEECCCCCCCCC
Confidence 79999999999999999999999999765533456899999999999999999999999953 9999999999999999
Q ss_pred ceeecCCCccccCCCCCCCcHHHHHHHHhcCCcccccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcCCCCHHHH
Q psy5092 115 GCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSLSTGRE 194 (291)
Q Consensus 115 g~al~~~~~~~TPLG~v~vD~el~~~L~~~~~~~~~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg~~~~~~~ 194 (291)
+++++..+ |+||||++++|++++++|.. .+...++.+|..|||+||||||||+++ + ++++||||++|.++.+++
T Consensus 80 ~~av~~~~-~~TPlG~v~vD~~l~~~L~~--~~~~~~~~ah~~EHSiEvqlPFLq~~~-~--~~~~iVPI~vg~~~~~~~ 153 (267)
T PRK00782 80 PVAVSPEG-WKTPLGDVEVDEELAKALAS--GIIDLDELAHKYEHSIEVQLPFLQYLF-G--KDFKIVPICLGMQDEETA 153 (267)
T ss_pred CeEEecCc-ccCCCcCCcCCHHHHHHHHH--hhhccchhhhhhhceEEecHHHhhHhh-c--CCCeEEEEEcCCCCHHHH
Confidence 99998777 99999999999999999982 344457789999999999999999985 2 689999999999999999
Q ss_pred HHHHHHHHhhhc--CCCeEEEEecCCcccCcCcccccCCcchHHHHHHHHhcChhchhhhhhhhhccccccCCCCCcchh
Q psy5092 195 AEYGRIFAPYLA--DPRNLFVISSDFCHWGDRFRFTYYDSAYGEIHQSIEALDRKSPSSSINRVYSILISRGPSDEEGHG 272 (291)
Q Consensus 195 ~~lg~~L~~~~~--~~~~liVaSsDLSH~g~~~gy~p~~~~D~~iie~I~~lD~~~l~~~~~~~~~~~~~~~~~~~~~~~ 272 (291)
.++|++|+++++ +++++||+|||||||+++.. ....|+.++++|+++|.++|++.+.++.. -.| |.|.+
T Consensus 154 ~~lg~~L~~~~~~~~~~vliIaSsDlSH~~~~~~---a~~~D~~~i~~I~~~d~~~l~~~~~~~~~--~~C----G~~pi 224 (267)
T PRK00782 154 REVGEAIAEAIEELGKKVVVIASSDFTHYEPAER---AKEKDMILIEAILDLDVDGFYDEIYRMNA--TAC----GYGPI 224 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeCCCcCcCCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHhcCC--ceE----CHHHH
Confidence 999999999887 67999999999999976411 13479999999999999999988876663 458 88999
Q ss_pred hHHHHhhcCc
Q psy5092 273 LSLMEILKPQ 282 (291)
Q Consensus 273 ~~~~~~~~~~ 282 (291)
..+|+++|..
T Consensus 225 ~~~l~~~~~~ 234 (267)
T PRK00782 225 AAMMTYSKKL 234 (267)
T ss_pred HHHHHHHHhc
Confidence 9999888753
No 6
>cd07320 Extradiol_Dioxygenase_3B_like Subunit B of Class III Extradiol ring-cleavage dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be further divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two-domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B. This model represents the catalytic subunit B of extradiol dioxygenase class
Probab=99.98 E-value=5.2e-32 Score=247.83 Aligned_cols=204 Identities=23% Similarity=0.273 Sum_probs=164.6
Q ss_pred EEEccCCcccccHHHHHH---------HHHhhCCCCCCEEEEECCCCCCCCCceeecCCCcccc---------CCCCCCC
Q psy5092 72 AIISPHAGYRYCGECAAF---------AYRQISPASVQRIFILGPSHYYQLGGCALSGAKKYST---------PLYDLKI 133 (291)
Q Consensus 72 aiIvPHAGy~ySG~~Aa~---------ay~~l~~~~p~~VVILGP~H~~~~~g~al~~~~~~~T---------PLG~v~v 133 (291)
++++||+||+|||.++++ .++.+...+||+||||||+|....+++++...+.|+| |+|++++
T Consensus 2 ~~~v~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~iviis~hh~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 81 (260)
T cd07320 2 AIIIPHGPALYAAEDTGKTRNDYQPIEISKRIKEKRPDTIIVVSPHHLVIISATAITCAETFETADSGQWGRRPVYDVKG 81 (260)
T ss_pred CCcccCCCcchhhcccccccCchHHHHHHHHHHHhCCCEEEEEeCCccccCCCEEEeecceeccccccccCCCCCcCCCC
Confidence 689999999999999888 5566655689999999999998888899988999999 9999999
Q ss_pred cHHHHHHHHhcC--Ccccc-cCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcCCC--CHHHHHHHHHHHHhhhc--
Q psy5092 134 DSQIYSELEATN--KFETI-SMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSL--STGREAEYGRIFAPYLA-- 206 (291)
Q Consensus 134 D~el~~~L~~~~--~~~~~-d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg~~--~~~~~~~lg~~L~~~~~-- 206 (291)
|++++++|.+.. ++... ....|..|||+|||||||+..+ .+++||||+++.. +.+++.++|++|+++++
T Consensus 82 d~ela~~l~~~~~~~~~~~~~~~~~~~DHg~~vpl~~l~~~~----~~~piVpi~i~~~~~~~~~~~~lG~aL~~~~~~~ 157 (260)
T cd07320 82 DPDLAWEIAEELIKEIPVTIVNEMDGLDHGTLVPLSYIFGDP----WDFKVIPLSVGVLVPPFAKLFEFGKAIRAAVEPS 157 (260)
T ss_pred CHHHHHHHHHHHHhcCCEEEEcccccCCeeecccHHHHhCCC----CCCcEEEEEeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 999999998754 22221 2223789999999999998765 6899999999988 89999999999999983
Q ss_pred CCCeEEEEecCCcccCcCccc------ccCC-cchHHHHHHHHhcChhchhhhhhhhhccccccCCCCCcchhhHHHHhh
Q psy5092 207 DPRNLFVISSDFCHWGDRFRF------TYYD-SAYGEIHQSIEALDRKSPSSSINRVYSILISRGPSDEEGHGLSLMEIL 279 (291)
Q Consensus 207 ~~~~liVaSsDLSH~g~~~gy------~p~~-~~D~~iie~I~~lD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (291)
+++++||+||||||+++++++ .|.. ++|+.+++.|+++|.+++.++... . ......-++....+.+|-.+
T Consensus 158 ~~~vliI~SGdlsH~~~~~~~~~~~~~~~~~~efD~~~~~~l~~~d~~~l~~~~~~-~--~~~~~~~~g~~~~~~~~ga~ 234 (260)
T cd07320 158 DLRVHVVASGDLSHQLQGDRPSSQSGYYPIAEEFDKYVIDNLEELDPVEFKNMHQY-L--TISNATPCGFHPLLILLGAL 234 (260)
T ss_pred CCcEEEEEeCccccCCCCCCcccccCcCcchHHHHHHHHHHHHcCCHHHHhhcChH-H--HhcCCCccCHHHHHHHHHhc
Confidence 678999999999999998864 2222 369999999999999999885411 1 11111234777778888887
Q ss_pred cCc
Q psy5092 280 KPQ 282 (291)
Q Consensus 280 ~~~ 282 (291)
++.
T Consensus 235 ~~~ 237 (260)
T cd07320 235 DGK 237 (260)
T ss_pred CCC
Confidence 664
No 7
>cd07365 MhpB_like Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate. 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB) catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate, yielding the product 2-hydroxy-6-oxo-nona-2,4-diene 1,9-dicarboxylate. It is an essential enzyme in the beta-phenylpropionic degradation pathway, in which beta-phenylpropionic is first hydrolyzed to produce 2,3-dihydroxyphenylpropionate. The enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the ca
Probab=99.93 E-value=5.1e-26 Score=215.13 Aligned_cols=157 Identities=17% Similarity=0.216 Sum_probs=129.5
Q ss_pred CCCCCEEEEECCCCCCC-CC--------ceeecCCCccccCCCCCCCcHHHHHHHHhcCCcccccCCCCC----CCcchh
Q psy5092 96 PASVQRIFILGPSHYYQ-LG--------GCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDE----EEHSLE 162 (291)
Q Consensus 96 ~~~p~~VVILGP~H~~~-~~--------g~al~~~~~~~TPLG~v~vD~el~~~L~~~~~~~~~d~~~h~----~EHSiE 162 (291)
..+||+|||+||+|+.. +. +.+....++|+||+|.+++|++++++|.+......+ +.+|. .|||+|
T Consensus 40 ~~~PD~iVIigphH~~~f~~~~~p~f~i~~a~~~~gd~~~p~g~~~~d~eLA~~L~~~~~~~g~-d~a~~~~~~lDHg~~ 118 (310)
T cd07365 40 AFDPELVVLFAPDHYNGFFYDLMPPFCIGTAATAVGDYGTLAGPLNVPRDLAEDLARHVLDSGI-DVAISHRMQVDHGFT 118 (310)
T ss_pred HcCCCEEEEEcCCcccccccccCCceEeeccCccccccccCCCCCCCCHHHHHHHHHhhhhcCC-ChhhccCCCCCcchH
Confidence 35799999999999984 55 333345689999999999999999999876532222 23344 899999
Q ss_pred chHHHHHHHhhccCCCcEEEEEEcCC-----CCHHHHHHHHHHHHhhhc--CCCeEEEEecCCccc--------------
Q psy5092 163 MQIPYIAKVMEDFKNEFTIVPVMVGS-----LSTGREAEYGRIFAPYLA--DPRNLFVISSDFCHW-------------- 221 (291)
Q Consensus 163 VqLPFLq~~~~~~~~~~~IVPI~vg~-----~~~~~~~~lg~~L~~~~~--~~~~liVaSsDLSH~-------------- 221 (291)
||||||++.+ ++++||||.++. ++.+++.++|++|+++++ +++++||+|||||||
T Consensus 119 VPL~fL~~~~----~~~pVVPI~vn~~~~P~~s~~r~~~lG~al~~ai~~~d~rV~VIaSGdLSH~~~~~~~~~~d~~~~ 194 (310)
T cd07365 119 QPLEELFGGL----DRYPVIPIFVNSVAPPLAPMRRARALGEAVGRFLAKLDKRVLFLGSGGLSHDPPVPQLATAPPEVA 194 (310)
T ss_pred hhHHHHhCCC----CCCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcccCCCchhhhhcccHHHH
Confidence 9999999877 679999999999 999999999999999887 578999999999999
Q ss_pred -----------------------------CcCcccccCCc-chHHHHHHHHhcChhchhhhhhhhh
Q psy5092 222 -----------------------------GDRFRFTYYDS-AYGEIHQSIEALDRKSPSSSINRVY 257 (291)
Q Consensus 222 -----------------------------g~~~gy~p~~~-~D~~iie~I~~lD~~~l~~~~~~~~ 257 (291)
.-++||.|.++ .|+++++.++++|.++|.++.++..
T Consensus 195 ~~l~~~d~~~~~~~~~~~~~i~~~~~~~~~gp~~~~p~~~~fD~~~l~~~~~gd~~~l~~~~~~~~ 260 (310)
T cd07365 195 ERLIAGRNPTPEARAARQQRVIAAAKAFAAGDSTLMPLNPEWDRAFLDLLASGDLAALDAMTNDEI 260 (310)
T ss_pred HHHHhcccchHHHHHHHHhhhhhhhhhcccCcccCCCCCHHHHHHHHHHHHcCCHHHHHcCCHHHH
Confidence 33467777554 6999999999999999998887743
No 8
>cd07951 ED_3B_N_AMMECR1 The N-terminal domain, an extradiol dioxygenase class III subunit B-like domain, of unknown proteins containing a C-terminal AMMECR1 domain. This subfamily is composed of uncharacterized proteins containing an N-terminal domain with similarity to the catalytic B subunit of class III extradiol dioxygenases and a C-terminal AMMECR1-like domain. This model represents the N-terminal domain. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon, however, proteins in this subfamily do not contain a potential metal binding site and may not exhibit class III extradiol dioxygenase-like activity. The AMMECR1 protein was proposed to be a regulatory factor that is potentially involved in the development of AMME contiguous gene deletion syndrome.
Probab=99.93 E-value=1.8e-25 Score=204.85 Aligned_cols=177 Identities=14% Similarity=0.114 Sum_probs=146.7
Q ss_pred CCCCEEEEECCCCCCCCCceeecCCCccccCCC---------CCCCcHHHHHHHHhcC---Cc--ccccCCCCCCCcchh
Q psy5092 97 ASVQRIFILGPSHYYQLGGCALSGAKKYSTPLY---------DLKIDSQIYSELEATN---KF--ETISMDVDEEEHSLE 162 (291)
Q Consensus 97 ~~p~~VVILGP~H~~~~~g~al~~~~~~~TPLG---------~v~vD~el~~~L~~~~---~~--~~~d~~~h~~EHSiE 162 (291)
.+||+|||+||+|......+++.....|.|||| ++++|.+++++|.+.. ++ ...+..+|..|||+|
T Consensus 37 ~~pd~ivvvg~h~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~d~~la~~l~~~l~~~g~~~~~~~~~~~~~DHg~~ 116 (256)
T cd07951 37 ARPDTIVVVSPHAPVFRDAFAISTGGTLRGDFSRFGAPEVSFGVDLDLELVEEIAGEADKEGLPVGALGERIPELDHGTL 116 (256)
T ss_pred cCCCEEEEECCCcccccceeEeccCCceecchhhcCCCcceEeeeCCHHHHHHHHHHhhhcCCCcccccCCCCCCCchhh
Confidence 579999999999988888899988899999999 8999999999998753 22 223344589999999
Q ss_pred chHHHHHHHhhccCCCcEEEEEEcCCCCHHHHHHHHHHHHhhhc--CCCeEEEEecCCcccCcC---cccccC-CcchHH
Q psy5092 163 MQIPYIAKVMEDFKNEFTIVPVMVGSLSTGREAEYGRIFAPYLA--DPRNLFVISSDFCHWGDR---FRFTYY-DSAYGE 236 (291)
Q Consensus 163 VqLPFLq~~~~~~~~~~~IVPI~vg~~~~~~~~~lg~~L~~~~~--~~~~liVaSsDLSH~g~~---~gy~p~-~~~D~~ 236 (291)
||||||++.+ .+++||||.++..+.+++.++|++|+++++ +++++||+||||||+... ++..|. ...|+.
T Consensus 117 vpl~~l~~~~----~~~pvVpi~~~~~~~~~~~~lG~aL~~~~~~~~~~vlii~SgdlsH~l~~~~p~~~~~~a~~~D~~ 192 (256)
T cd07951 117 VPLYFLRKAG----SDGKLVRIGLSGLSPEELYAFGRALAAAAEELGRRVALIASGDLSHRLTEDAPGGYDPRGPEFDAA 192 (256)
T ss_pred hhHHhhcccC----CcCCeEEEecCCCCHHHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCCCCCCcchHHHHHH
Confidence 9999999876 689999999999999999999999999874 568999999999998532 233332 247999
Q ss_pred HHHHHHhcChhchhhhhhhhhccccccCCCCCcchhhHHHHhhcC
Q psy5092 237 IHQSIEALDRKSPSSSINRVYSILISRGPSDEEGHGLSLMEILKP 281 (291)
Q Consensus 237 iie~I~~lD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (291)
++++|+++|.++|.++.+++.+..--| |.++...+|..++.
T Consensus 193 ~~~~l~~~D~~~L~~~~~~~~~~~~~~----G~~~~~~l~~~~~~ 233 (256)
T cd07951 193 IAEALAKGDVDALLALDPELAEEAGEC----GRRSWQVLAGALDG 233 (256)
T ss_pred HHHHHHcCCHHHHHhcCHHHHHHHHhc----ChHHHHHHHHhccC
Confidence 999999999999999887665544445 57888888888865
No 9
>PRK03881 hypothetical protein; Provisional
Probab=99.91 E-value=5.4e-24 Score=211.27 Aligned_cols=204 Identities=15% Similarity=0.147 Sum_probs=158.8
Q ss_pred eEEEccCCccccc-------HHH--HHHHHHhhC----CCCCCEEEEECCCCCCCCCceeecCCCccccCCC--------
Q psy5092 71 RAIISPHAGYRYC-------GEC--AAFAYRQIS----PASVQRIFILGPSHYYQLGGCALSGAKKYSTPLY-------- 129 (291)
Q Consensus 71 ~aiIvPHAGy~yS-------G~~--Aa~ay~~l~----~~~p~~VVILGP~H~~~~~g~al~~~~~~~TPLG-------- 129 (291)
.|+++||.--... ... ...+|+.+. ..+||+|||+||||......+++.....|.||||
T Consensus 5 ~a~~~PH~P~l~p~~~~~~~~~~~~~~~a~~~~~~~l~~~~Pd~IVVispH~~~~~~~~~i~~~~~~~gdf~~fg~~~v~ 84 (467)
T PRK03881 5 GAYLMPHPPIIVPEVGRGEEKKIQATIDALRELARRIAEKKPDTIIIISPHGPVFRDAVAISDGPRLKGDLGRFGAPEVS 84 (467)
T ss_pred EEEEcCCCCEeecCCCCCchhhHHHHHHHHHHHHHHHHHhCCCEEEEECCCcccccCcEEEecCcceeeehhccCCCCcc
Confidence 3677888543333 122 134454443 2479999999997776777788888899999999
Q ss_pred -CCCCcHHHHHHHHhcC---Ccccc--c-------CCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcCCCCHHHHHH
Q psy5092 130 -DLKIDSQIYSELEATN---KFETI--S-------MDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSLSTGREAE 196 (291)
Q Consensus 130 -~v~vD~el~~~L~~~~---~~~~~--d-------~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg~~~~~~~~~ 196 (291)
++++|.+++++|.+.. ++... + +..+..|||+|||||||++.+ .+++||||.++..+.+++.+
T Consensus 85 ~~~~~d~eLA~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~lDHg~~VpL~fl~~~~----~d~pVVpis~~~~~~~~~~~ 160 (467)
T PRK03881 85 FSFKNDLELVEEIAEEAKKEGIPVVEVDEELARKYEVSGELDHGTMVPLYFLRKAG----SDFKLVHISYGGLSPEELYK 160 (467)
T ss_pred ccCCCCHHHHHHHHHHHHHcCCceEeecccccccccCCCCCCceEEeehhhhcccc----CCCCEEEEeCCCCCHHHHHH
Confidence 7999999999997654 33322 2 467789999999999999876 68999999999999999999
Q ss_pred HHHHHHhhhc--CCCeEEEEecCCcccCc---CcccccCC-cchHHHHHHHHhcChhchhhhhhhhhccccccCCCCCcc
Q psy5092 197 YGRIFAPYLA--DPRNLFVISSDFCHWGD---RFRFTYYD-SAYGEIHQSIEALDRKSPSSSINRVYSILISRGPSDEEG 270 (291)
Q Consensus 197 lg~~L~~~~~--~~~~liVaSsDLSH~g~---~~gy~p~~-~~D~~iie~I~~lD~~~l~~~~~~~~~~~~~~~~~~~~~ 270 (291)
+|++|+++++ +++++||+|||||||.. ++++.|.. .+|+.++++|+++|.++|.++..++.+-.-.| +.+
T Consensus 161 lG~aL~~~~~~~~~rvliIaSGdLSH~l~~~~p~g~~~~a~~fD~~ii~~i~~gD~~~L~~~~~~~~~~a~~c----G~~ 236 (467)
T PRK03881 161 FGMAIREAAEELGRKVVLIASGDLSHRLTPDGPYGYAPEGPEFDRAIVELLSKGDVEGLLSIDEELIEEAGEC----GLR 236 (467)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCcccccCCCCCCCCCCcchHHHHHHHHHHHHcCCHHHHHhcCHHHHHhhhhc----CHH
Confidence 9999999876 56899999999999974 35665544 37999999999999999998876544443345 577
Q ss_pred hhhHHHHhhcCc
Q psy5092 271 HGLSLMEILKPQ 282 (291)
Q Consensus 271 ~~~~~~~~~~~~ 282 (291)
....+|..++..
T Consensus 237 p~~~~lga~~~~ 248 (467)
T PRK03881 237 SVLIMLGALDGY 248 (467)
T ss_pred HHHHHHHhcccc
Confidence 888888887754
No 10
>cd07952 ED_3B_like Uncharacterized class III extradiol dioxygenases. This subfamily is composed of proteins of unknown function with similarity to the catalytic B subunit of class III extradiol dioxygenases. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. They play key roles in the degradation of aromatic compounds.
Probab=99.91 E-value=1.2e-23 Score=193.75 Aligned_cols=199 Identities=16% Similarity=0.136 Sum_probs=150.9
Q ss_pred EEEccCCcccccH-----HHHHHHHHhh--CCCCCCEEEEECCCCCCCCCceeecCC----CccccCC----CCCCCcHH
Q psy5092 72 AIISPHAGYRYCG-----ECAAFAYRQI--SPASVQRIFILGPSHYYQLGGCALSGA----KKYSTPL----YDLKIDSQ 136 (291)
Q Consensus 72 aiIvPHAGy~ySG-----~~Aa~ay~~l--~~~~p~~VVILGP~H~~~~~g~al~~~----~~~~TPL----G~v~vD~e 136 (291)
++++||-+.++-- .-+...++.. +..+||+|||+||+|.....++++... +.|.||. +++++|.+
T Consensus 2 ~~fi~HG~~~~~~~~~~~~~~~~~l~~~~~~~~~Pd~IvvispH~~~~~~~~~i~~~~~~~g~~~~p~~~~~~~~~~d~e 81 (256)
T cd07952 2 IAVIPHGDEIIDPLDEESRKLNEAIKEEGAKNDDPDVLVVITPHGIRLSGHVAVILTEYLEGTLRTNKVLIRSKYPNDRE 81 (256)
T ss_pred eEEcCCCCccCCCCCcchHHHHHHHHHHHHHhcCCCEEEEECCCcccccCceEEeecCeeeeecccCCCceEEecCCCHH
Confidence 5788886633322 2233444443 235799999999999988888888776 9999999 99999999
Q ss_pred HHHHHHhcC-----CcccccCCCCC-------CCcchhchHHHHHHHhhccCCCcEEEEEEcCCC-CHHHHHHHHHHHHh
Q psy5092 137 IYSELEATN-----KFETISMDVDE-------EEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSL-STGREAEYGRIFAP 203 (291)
Q Consensus 137 l~~~L~~~~-----~~~~~d~~~h~-------~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg~~-~~~~~~~lg~~L~~ 203 (291)
++++|.+.. +....+...|. .||+.-|||||||+ .+||+|.++.. +.+++.++|++|++
T Consensus 82 la~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~lDHG~~VPL~fl~~--------~pvV~is~~~~~~~~~~~~lG~aL~~ 153 (256)
T cd07952 82 LANEIYKSARADGIPVLGINFATSSGDNSDFPLDWGELIPLSFLKK--------RPIVLITPPRLLPREELVEFGRALGK 153 (256)
T ss_pred HHHHHHHHHHHcCCceeeccchhhccccCCCCCCccccccHhhCCC--------CCeEEEccccCCCHHHHHHHHHHHHH
Confidence 999997763 22223333344 45555599999874 27999999887 99999999999999
Q ss_pred hhc--CCCeEEEEecCCcccCc---CcccccCC-cchHHHHHHHHhcChhchhhhhhhhhccccccCCCCCcchhhHHHH
Q psy5092 204 YLA--DPRNLFVISSDFCHWGD---RFRFTYYD-SAYGEIHQSIEALDRKSPSSSINRVYSILISRGPSDEEGHGLSLME 277 (291)
Q Consensus 204 ~~~--~~~~liVaSsDLSH~g~---~~gy~p~~-~~D~~iie~I~~lD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (291)
+++ +++++||+||||||+.+ +++|.|.. ++|+.++++|+++|.+++.++.+++..-.--| +.+..+.+|.
T Consensus 154 ~~~~~~~~vliIaSGdlSH~l~~~~p~~~~~~a~~fD~~~~~~l~~~d~~~l~~~~~~~~~~a~~c----g~~pl~~~lg 229 (256)
T cd07952 154 ALEGYEKRVAVIISADHAHTHDPDGPYGYSPDAAEYDAAIVEAIENNDFEALLELDDELIEKAKPD----SYWQLLILAG 229 (256)
T ss_pred HHHhcCCcEEEEEecCccccCCCCCCCCCCcchHHHHHHHHHHHHcCCHHHHHhCCHHHHHHhhhc----CHHHHHHHHh
Confidence 875 56899999999999986 35555544 36999999999999999998876544433334 6788888888
Q ss_pred hhcCc
Q psy5092 278 ILKPQ 282 (291)
Q Consensus 278 ~~~~~ 282 (291)
.++..
T Consensus 230 a~~~~ 234 (256)
T cd07952 230 ILESS 234 (256)
T ss_pred hccCC
Confidence 88764
No 11
>PRK13358 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=99.89 E-value=1.4e-22 Score=187.59 Aligned_cols=178 Identities=16% Similarity=0.201 Sum_probs=130.8
Q ss_pred EEEccCCccc------ccHHHHHHHHHhhCC----CCCCEEEEECCCCCCC-----CCceeecCCCccccCCCC------
Q psy5092 72 AIISPHAGYR------YCGECAAFAYRQISP----ASVQRIFILGPSHYYQ-----LGGCALSGAKKYSTPLYD------ 130 (291)
Q Consensus 72 aiIvPHAGy~------ySG~~Aa~ay~~l~~----~~p~~VVILGP~H~~~-----~~g~al~~~~~~~TPLG~------ 130 (291)
+..+||. +. -..+....+++.+.. .+||+|||+||+|... ..++++ ..++|.||+|+
T Consensus 7 ~~~~pH~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Pd~iViis~~h~~~~~~~~~~~~~i-~~~~~~~p~gd~g~~~~ 84 (269)
T PRK13358 7 AFATSHV-LMSSKGGEEQAKRVVEGMREIGRRLRELRPDVLVVIGSDHLFNFNTGCQPPFLV-GTGDSDTPYGDMDIPRE 84 (269)
T ss_pred ehccccc-ccCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchhhhcccccCCCeEE-EecCCCCCccccCCCcc
Confidence 5778882 22 123344555655542 4799999999999844 345676 47889999998
Q ss_pred -CCCcHHHHHHHHhcC---CcccccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcC-----CCCHHHHHHHHHHH
Q psy5092 131 -LKIDSQIYSELEATN---KFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVG-----SLSTGREAEYGRIF 201 (291)
Q Consensus 131 -v~vD~el~~~L~~~~---~~~~~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg-----~~~~~~~~~lg~~L 201 (291)
++.|.+++++|.+.. ++.......|..||| +++||++ ++++ .+++||||.++ .++.+++.++|++|
T Consensus 85 ~~~g~~~LA~~l~~~~~~~~~~~a~~~~~~~DHg--~~vPl~~-l~~~--~~~pvVpisv~~~~~p~~~~~~~~~lG~al 159 (269)
T PRK13358 85 LVPGHRAFAQAIALHRAADGFDLAQAEELRPDHG--VMIPLLF-MDPG--RRIPVVPVYVNINTDPFPSAKRCAALGEVI 159 (269)
T ss_pred cCCCCHHHHHHHHHHHHHcCCCeeeccccCCCcc--hhhhHHH-hcCC--CCCCEEEEEecccCCCCCCHHHHHHHHHHH
Confidence 777777798887643 233222334889999 5777766 5532 37999999988 66789999999999
Q ss_pred Hhhhc-----CCCeEEEEecCCcccCcCcccccCC-cchHHHHHHHHhcChhchhhhhhhh
Q psy5092 202 APYLA-----DPRNLFVISSDFCHWGDRFRFTYYD-SAYGEIHQSIEALDRKSPSSSINRV 256 (291)
Q Consensus 202 ~~~~~-----~~~~liVaSsDLSH~g~~~gy~p~~-~~D~~iie~I~~lD~~~l~~~~~~~ 256 (291)
+++++ +++++||+||||||+.+..++.|.. ++|+.++++|+++|.++|.++.+++
T Consensus 160 ~~~~~~~~~~~~rvlvIaSGdlSH~l~~~~~~~~~~~fD~~~~~~i~~~D~~~l~~~~~~~ 220 (269)
T PRK13358 160 RQAVEKDRPADERVAVIGTGGLSHWLGVPEHGEVNEDFDRMVMDALVSGDLEALVALGNEE 220 (269)
T ss_pred HHHHHhhCCCCCcEEEEecCCccCCCCCccccccHHHHHHHHHHHHHcCCHHHHHhcCHHH
Confidence 99874 4789999999999997644444444 4799999999999999997755433
No 12
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=99.87 E-value=8.9e-22 Score=182.17 Aligned_cols=163 Identities=17% Similarity=0.194 Sum_probs=121.8
Q ss_pred HHHHhhC----CCCCCEEEEECCCCCCCCC-----ceeecCC--------CccccCCCCCCCcHHHHHHHHhcC---Ccc
Q psy5092 89 FAYRQIS----PASVQRIFILGPSHYYQLG-----GCALSGA--------KKYSTPLYDLKIDSQIYSELEATN---KFE 148 (291)
Q Consensus 89 ~ay~~l~----~~~p~~VVILGP~H~~~~~-----g~al~~~--------~~~~TPLG~v~vD~el~~~L~~~~---~~~ 148 (291)
.+|+.+. ..+||+|||+||+|+..+. .+++... ..|.||.+++++|.+++++|.+.. ++.
T Consensus 31 ~~l~~~~~~l~~~~Pd~ivvis~~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~elA~~i~~~~~~~g~~ 110 (271)
T cd07359 31 AAFARIRDRLEAARPDVVVVVGNDHFTNFFLDNMPAFAIGIADSYEGPDEGWLGIPRAPVPGDADLARHLLAGLVEDGFD 110 (271)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCcHHhhcCcccCCceEEeecccccCCccccccCcCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 4555553 2489999999999987754 2333211 126999999999999999997654 332
Q ss_pred cccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcCC-----CCHHHHHHHHHHHHhhhc----CCCeEEEEecCCc
Q psy5092 149 TISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGS-----LSTGREAEYGRIFAPYLA----DPRNLFVISSDFC 219 (291)
Q Consensus 149 ~~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg~-----~~~~~~~~lg~~L~~~~~----~~~~liVaSsDLS 219 (291)
.........|||++|||+||+... +++||||.++. .+.+++.++|++|+++++ +++++||+|||||
T Consensus 111 ~a~~~~~~lDHg~~vpL~~l~~~~-----~~pvVpvsv~~~~~~~~~~~~~~~lG~aL~~~i~~~~~d~rV~iIaSGdlS 185 (271)
T cd07359 111 VAFSYELRLDHGITVPLHFLDPDN-----DVPVVPVLVNCVTPPLPSLRRCYALGRALRRAIESFPGDLRVAVLGTGGLS 185 (271)
T ss_pred eeccCCCCCCcchhhHHHHhcCCC-----CCCEEEEEecccCCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEecCccc
Confidence 221222348999999999998653 69999999875 468899999999999865 5689999999999
Q ss_pred ccCcC--cccccCCcchHHHHHHHHhcChhchhhhhhhhh
Q psy5092 220 HWGDR--FRFTYYDSAYGEIHQSIEALDRKSPSSSINRVY 257 (291)
Q Consensus 220 H~g~~--~gy~p~~~~D~~iie~I~~lD~~~l~~~~~~~~ 257 (291)
|+.+. ++. ...++|+.+++.|+++|.+++.....+..
T Consensus 186 H~l~~~~~g~-~~~~fD~~~~~~l~~~d~~~l~~~~~~~~ 224 (271)
T cd07359 186 HWPGGPRHGE-INEEFDREFLDLLERGDLEALLKATTEET 224 (271)
T ss_pred CCCCCccccc-cCHHHHHHHHHHHHhCCHHHHHhcCHHHH
Confidence 99654 331 22347999999999999998776654443
No 13
>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional
Probab=99.86 E-value=1.4e-21 Score=185.19 Aligned_cols=158 Identities=16% Similarity=0.202 Sum_probs=122.4
Q ss_pred CCCCEEEEECCCCCCC-CC--------ceeecCCCccccCCCCCCCcHHHHHHHHhcCCcccccCCCCCCCcchhchHHH
Q psy5092 97 ASVQRIFILGPSHYYQ-LG--------GCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPY 167 (291)
Q Consensus 97 ~~p~~VVILGP~H~~~-~~--------g~al~~~~~~~TPLG~v~vD~el~~~L~~~~~~~~~d~~~h~~EHSiEVqLPF 167 (291)
.+||+|||+||+|+.. +. +.+....++|.||.|.+++|.+++++|.+...-.-++ ..+ .|++|++.+|
T Consensus 41 ~~PD~iVIigpdH~~~f~~d~~P~f~i~~~~~~~gd~~~~~g~~~~d~eLA~~i~~~~~~~g~d-~a~--~~~~~lDHG~ 117 (313)
T PRK13370 41 FDPELVVLFAPDHYNGFFYDVMPPFCIGVSATAVGDYGTAAGPLPVPSDLAEALAEAVLDSGID-VAV--SYRMQVDHGF 117 (313)
T ss_pred hCCCEEEEEcCCcccccccccCCceEeccCCCcCcccccCCCCCCCCHHHHHHHHHHhHhcCCC-hhh--cCCcCCCEeH
Confidence 5699999999999987 44 2333346899999999999999999998765322222 222 3666777777
Q ss_pred HH---HHhhccCCCcEEEEEEcC-----CCCHHHHHHHHHHHHhhhc--CCCeEEEEecCCcccC---------------
Q psy5092 168 IA---KVMEDFKNEFTIVPVMVG-----SLSTGREAEYGRIFAPYLA--DPRNLFVISSDFCHWG--------------- 222 (291)
Q Consensus 168 Lq---~~~~~~~~~~~IVPI~vg-----~~~~~~~~~lg~~L~~~~~--~~~~liVaSsDLSH~g--------------- 222 (291)
++ +++++ ..+++||||.++ ..+.+++.+||++|+++++ +++++||+|||||||.
T Consensus 118 ~vPL~~l~~~-~~~~pVVpI~vn~~~~p~~s~~r~~~lG~aI~~ai~~~d~rVlvIaSGdLSH~~~~~~~~~~d~~~~er 196 (313)
T PRK13370 118 AQPLEFLLGG-LDAYPVIPVFINSVAAPLPPFRRVRLLGEAVGRFLATLDKRVLFLGSGGLSHDPPVPELATADPEVRER 196 (313)
T ss_pred HHHHHHhcCC-CCCceEEEEeecCCCCCcCCHHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcCCCchHhHhhccHHHHHH
Confidence 66 55521 024899999998 7889999999999999876 6889999999999972
Q ss_pred ----------------------------cCcccccCCc-chHHHHHHHHhcChhchhhhhhhhhc
Q psy5092 223 ----------------------------DRFRFTYYDS-AYGEIHQSIEALDRKSPSSSINRVYS 258 (291)
Q Consensus 223 ----------------------------~~~gy~p~~~-~D~~iie~I~~lD~~~l~~~~~~~~~ 258 (291)
-+++|.|.++ .|+.+++.++++|.++|..+.++...
T Consensus 197 l~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~p~~~~~D~~~l~~l~~gd~~~l~~~~~~~~~ 261 (313)
T PRK13370 197 LIAGRNPTPEERAARQQRVIAAARIFAAGQSALHPLNPEWDRAFLDLLESGDLAALDAWTNEEIT 261 (313)
T ss_pred HHccCCccHHHHHHHHhhHHhhhhhcccCcccCCCCCHHHHHHHHHHHHcCCHHHHhcCCHHHHH
Confidence 1356666654 69999999999999999999877654
No 14
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=99.78 E-value=2.3e-18 Score=160.92 Aligned_cols=164 Identities=15% Similarity=0.156 Sum_probs=124.2
Q ss_pred HHHHHhhC----CCCCCEEEEECCCCCCCC--C---ceeecCCCccccC---C-----CCCCCcHHHHHHHHhcC---Cc
Q psy5092 88 AFAYRQIS----PASVQRIFILGPSHYYQL--G---GCALSGAKKYSTP---L-----YDLKIDSQIYSELEATN---KF 147 (291)
Q Consensus 88 a~ay~~l~----~~~p~~VVILGP~H~~~~--~---g~al~~~~~~~TP---L-----G~v~vD~el~~~L~~~~---~~ 147 (291)
-.+|..++ ..+||+|||+||.|...+ + .+++......... + +.++.|.+++++|.+.. ++
T Consensus 34 ~~a~~~~~~~v~~~~PDvvVvis~dH~~~ff~d~~p~f~i~~~~~~~g~~~~~g~~~~~~~~~~~~lA~~i~~~l~~~gi 113 (278)
T PRK13364 34 FDGFPPVREWLEKVKPDVAVVFYNDHGLNFFLDKMPTFAVGAAPEYSNADEGWGIPTLAPFKGDTELSWHIIESLVEEEF 113 (278)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCchHhhhccccCCeEEEeeCceecCChhhcCCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 34555543 468999999998897653 4 4666554444443 3 47999999999997654 34
Q ss_pred ccccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEc-----CCCCHHHHHHHHHHHHhhhc----CCCeEEEEecCC
Q psy5092 148 ETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMV-----GSLSTGREAEYGRIFAPYLA----DPRNLFVISSDF 218 (291)
Q Consensus 148 ~~~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~v-----g~~~~~~~~~lg~~L~~~~~----~~~~liVaSsDL 218 (291)
..........||+.-|+|.||..-.. .++++|||.+ ...+.+++++||++|+++++ ++|++||+|+||
T Consensus 114 d~~~~~~~~lDHG~~vPL~~l~~~~d---~~~pvVpv~ln~~~~p~~~~~r~~~lG~al~~~i~~~~~d~rV~iIaSG~L 190 (278)
T PRK13364 114 DITTCQEMLVDHAFTLPLELFWPGRD---YPVKVVPVCINTVQHPLPSARRCYKLGQAIGRAIASWPSDERVVVIGTGGL 190 (278)
T ss_pred CeecccCCCCCcchhhhHHHhCcccC---CCCCEEEEEeeccCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCcc
Confidence 43333446789999999999875320 2488999999 44579999999999999974 578999999999
Q ss_pred cccCc--CcccccCCcchHHHHHHHHhcChhchhhhhhhh
Q psy5092 219 CHWGD--RFRFTYYDSAYGEIHQSIEALDRKSPSSSINRV 256 (291)
Q Consensus 219 SH~g~--~~gy~p~~~~D~~iie~I~~lD~~~l~~~~~~~ 256 (291)
||+.. ++||.+ ...|+++++.+++ |.++|.++.+++
T Consensus 191 SH~l~~~p~G~~~-~~fD~~~l~~l~~-d~~~l~~~~~~e 228 (278)
T PRK13364 191 SHQLDGERAGFIN-KDFDLQCMDSLVS-DPEWLTQYSNHE 228 (278)
T ss_pred ccCCCCCCcccCC-HHHHHHHHHHHHh-CHHHHHcCCHHH
Confidence 99954 577765 5689999999999 999999988543
No 15
>cd07370 HPCD The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. HPCD is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.
Probab=99.76 E-value=1.3e-17 Score=155.63 Aligned_cols=185 Identities=13% Similarity=0.112 Sum_probs=125.5
Q ss_pred HHHHhhC----CCCCCEEEEECCCCCCCCCceeecCCCccccCCC-------------CCCCcHHHHHHHHhcCCccccc
Q psy5092 89 FAYRQIS----PASVQRIFILGPSHYYQLGGCALSGAKKYSTPLY-------------DLKIDSQIYSELEATNKFETIS 151 (291)
Q Consensus 89 ~ay~~l~----~~~p~~VVILGP~H~~~~~g~al~~~~~~~TPLG-------------~v~vD~el~~~L~~~~~~~~~d 151 (291)
.+++.+. ..+||+|||++|+|.. .....+......++.++ +++.|.+++++|.+...-.-++
T Consensus 32 ~~~~~~~~~l~~~~Pd~ivviS~H~~~-~~~~~i~~~~~~~g~~~~~g~p~~~~~i~~~~~gd~ela~~i~~~~~~~g~~ 110 (280)
T cd07370 32 DGLKEIGRRARELGVDTIVVFDTHWLV-NAGYHINANARFSGLFTSNELPHFIADMPYDYAGDPELAHLIAEEATEHGVK 110 (280)
T ss_pred HHHHHHHHHhhHcCCCEEEEECCCccc-ccceeEeccCCCCceecCCCCCchhcCCCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 4555553 2489999999985433 32244433322222211 4888999999997654222223
Q ss_pred CCCCCCCcchhchHHHH---HHHhhccCCCcEEEEEEc-CCCCHHHHHHHHHHHHhhhc--CCCeEEEEecCCcccCcC-
Q psy5092 152 MDVDEEEHSLEMQIPYI---AKVMEDFKNEFTIVPVMV-GSLSTGREAEYGRIFAPYLA--DPRNLFVISSDFCHWGDR- 224 (291)
Q Consensus 152 ~~~h~~EHSiEVqLPFL---q~~~~~~~~~~~IVPI~v-g~~~~~~~~~lg~~L~~~~~--~~~~liVaSsDLSH~g~~- 224 (291)
...| .||+.|++.+|+ ++++++ .+++||||.+ +..+.+++.++|++|+++++ +++++||+||||||+...
T Consensus 111 ~~~~-~~~~~~lDhg~~vPL~~l~p~--~~~pvV~is~~~~~~~~~~~~lG~al~~~~~~~~~~v~iIaSG~lsH~l~~~ 187 (280)
T cd07370 111 TLAH-EDPSLPLEYGTLVPMRFMNED--DHFKVVSVAVWCTHDIEESRRLGEAIRRAIAASDRRVALLASGSLSHRFWPN 187 (280)
T ss_pred eeee-cCCCCCCCeeHhhHHHHhCCC--CCceEEEEeecCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeccccccCccC
Confidence 3344 677778887777 777732 3799999999 56899999999999999875 568999999999998532
Q ss_pred --cccc--------cCC-cchHHHHHHHHhcChhchhhhhhhhhccccccCCCCCcchhhHHHHhhc
Q psy5092 225 --FRFT--------YYD-SAYGEIHQSIEALDRKSPSSSINRVYSILISRGPSDEEGHGLSLMEILK 280 (291)
Q Consensus 225 --~gy~--------p~~-~~D~~iie~I~~lD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (291)
++|. |.. .+|+.++++|+++|.+++.+..+++ +..-| +..+..|.+.++-.+.
T Consensus 188 ~~~~~~~~~~~~~~p~~~~fD~~~~~~i~~gD~~~L~~~~~~~--~~~~~-g~~g~~~~l~l~~alG 251 (280)
T cd07370 188 RELEAHEDPFTISSPFNRQVDLRVLELWKEGRHAEFLDMLPDY--ARRCA-GEGGMHDTAMLFGALG 251 (280)
T ss_pred CCccccccccccCChhHHHHHHHHHHHHHcCCHHHHHHhCHHH--HHHhC-ccCChHHHHHHHhhhC
Confidence 3432 222 3699999999999999998875422 22334 3334557777766663
No 16
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=99.74 E-value=3.1e-17 Score=153.13 Aligned_cols=183 Identities=14% Similarity=0.223 Sum_probs=131.1
Q ss_pred EEEccCCcccc--c--H--HHHHH---HHHhhC----CCCCCEEEEECCCCCCCCCce-----eecCCCccccCCCC---
Q psy5092 72 AIISPHAGYRY--C--G--ECAAF---AYRQIS----PASVQRIFILGPSHYYQLGGC-----ALSGAKKYSTPLYD--- 130 (291)
Q Consensus 72 aiIvPHAGy~y--S--G--~~Aa~---ay~~l~----~~~p~~VVILGP~H~~~~~g~-----al~~~~~~~TPLG~--- 130 (291)
|+.+||.--.+ - | ..++. +|..+. ..+||+|||+||+|...+... ++.. ++..+|+|+
T Consensus 7 a~~~sH~P~i~~~~~~~~~~~~~~~~~a~~~~~~~v~~~~pD~ivvi~~dH~~~f~~~~~P~f~i~~-~~~~g~~~~~~~ 85 (277)
T cd07368 7 GFMMPHDPVMFVTPTAPPAAQREICWHAYAICAERLAALQVTSVVVIGDDHYTLFGTYCLPMYLIGT-GDVDGPYDPLPG 85 (277)
T ss_pred EeecCCCccccCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHhhhhhccCCceEEec-ccccCCccccCC
Confidence 57778855443 1 1 33333 343332 368999999999998766442 3432 346777764
Q ss_pred -----CCCcHHHHHHHHhcC---CcccccCCCCCCCcchhchHHHHHHH--hhccCCCcEEEEEEcC-----CCCHHHHH
Q psy5092 131 -----LKIDSQIYSELEATN---KFETISMDVDEEEHSLEMQIPYIAKV--MEDFKNEFTIVPVMVG-----SLSTGREA 195 (291)
Q Consensus 131 -----v~vD~el~~~L~~~~---~~~~~d~~~h~~EHSiEVqLPFLq~~--~~~~~~~~~IVPI~vg-----~~~~~~~~ 195 (291)
++.|.+++++|.+.. ++.......-..||+.-|+|.||..- +.+ .++++|||.++ ..+.+++.
T Consensus 86 ~~~~~~~g~~eLA~~i~~~l~~~g~~~~~~~~~~lDHG~~vPL~~l~~~~~~~~--~~~p~VPV~~n~~~~p~~~~~~~~ 163 (277)
T cd07368 86 LPRAVIENNEPLAHHIMQHGLEYGIDWAVARSFTVDHAATIPIHLAVRPVRAKG--KGMRAIPVYLATGVDPFITSWRAH 163 (277)
T ss_pred CCcccCcCCHHHHHHHHHHHHHcCCCEeeecCcCCCcchhccHHHHhCcccccC--CCCCeEEEEEecccCCCCCHHHHH
Confidence 889999999987654 44333233455799999999998431 011 47889999874 57789999
Q ss_pred HHHHHHHhhhc----CCCeEEEEecCCcccCcCcccccC-CcchHHHHHHHHhcChhchhhhhhhhh
Q psy5092 196 EYGRIFAPYLA----DPRNLFVISSDFCHWGDRFRFTYY-DSAYGEIHQSIEALDRKSPSSSINRVY 257 (291)
Q Consensus 196 ~lg~~L~~~~~----~~~~liVaSsDLSH~g~~~gy~p~-~~~D~~iie~I~~lD~~~l~~~~~~~~ 257 (291)
++|++|+++++ +++++||+|+|+||+.....+.+. ..+|+.+++.+++.|.++|.++.+++.
T Consensus 164 ~lG~al~~ai~~~~~d~rVliIaSG~LSH~l~~~~~~~~~~~fD~~~~~~l~~gd~~~L~~~~~~~~ 230 (277)
T cd07368 164 ELGRVIGAAVEAWQGDERVAIIGSGGISHWVGTAEMGAVNEGFDREIMKLVAQGDLAALIALSDEEI 230 (277)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEcCcccCCCCCccccccCHHHHHHHHHHHHcCCHHHHHhCCHHHH
Confidence 99999999776 689999999999999754433333 247999999999999999999876663
No 17
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=99.74 E-value=4.6e-17 Score=153.24 Aligned_cols=184 Identities=10% Similarity=0.118 Sum_probs=130.4
Q ss_pred eEEEccCCccccc--------HHH------HHHHHHhhC----CCCCCEEEEECCCCCCCCCceeecCCCccccCCC---
Q psy5092 71 RAIISPHAGYRYC--------GEC------AAFAYRQIS----PASVQRIFILGPSHYYQLGGCALSGAKKYSTPLY--- 129 (291)
Q Consensus 71 ~aiIvPHAGy~yS--------G~~------Aa~ay~~l~----~~~p~~VVILGP~H~~~~~g~al~~~~~~~TPLG--- 129 (291)
-|.++||....+- |.- .-.+|..+. ..+||+|||++|+|....+ ..+.+...++..+.
T Consensus 5 ~a~~~pH~p~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~Pd~IVViSpHw~~~~~-~~~~~~p~~~G~~~~~~ 83 (294)
T cd07372 5 SGFLAPHPPHLVYGENPPQNEPRSQGGWEQLRWAYERARESIEALKPDVLLVHSPHWITSVG-HHFLGVPELSGRSVDPI 83 (294)
T ss_pred EEEecCCCCeeecccCCcccccccchhHHHHHHHHHHHHHHHHHcCCCEEEEECCCcccccC-eeeecCCcccccccccc
Confidence 4788888665551 111 225666553 4689999999997665543 33333221111111
Q ss_pred ---------CCCCcHHHHHHHHhcC---Cccc--ccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcCCCC-----
Q psy5092 130 ---------DLKIDSQIYSELEATN---KFET--ISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSLS----- 190 (291)
Q Consensus 130 ---------~v~vD~el~~~L~~~~---~~~~--~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg~~~----- 190 (291)
.++.|++++++|.+.. ++.. .+......||+.-|+|.||+.- .+++||+|.++.++
T Consensus 84 ~p~~~~~~~~~~gd~eLA~~i~~~~~~~Gi~~~~~~~~~~~LDHGt~vPL~fl~p~-----~~~pvV~is~~~l~~~~~~ 158 (294)
T cd07372 84 FPNLFRYDFSMNVDVELAEACCEEGRKAGLVTKMMRNPRFRVDYGTITTLHMIRPQ-----WDIPVVGISANNTPYYLNT 158 (294)
T ss_pred cccceeeccCCCCCHHHHHHHHHHHHHCCCCeeeccCCCCCCCchHHHHHHHhCCC-----CCCcEEEEecCcccccccc
Confidence 1578999999987644 3433 2345567999999999998532 57999999987544
Q ss_pred ---HHHHHHHHHHHHhhhc--CCCeEEEEecCCcccC----c--Cccccc------CC-cchHHHHHHHHhcChhchhhh
Q psy5092 191 ---TGREAEYGRIFAPYLA--DPRNLFVISSDFCHWG----D--RFRFTY------YD-SAYGEIHQSIEALDRKSPSSS 252 (291)
Q Consensus 191 ---~~~~~~lg~~L~~~~~--~~~~liVaSsDLSH~g----~--~~gy~p------~~-~~D~~iie~I~~lD~~~l~~~ 252 (291)
.++++++|++|+++++ ++|++||+|+||||+. + +++|.+ .+ ..|+.+++.++++|.+++.++
T Consensus 159 ~~~~~~~~~lG~ai~~al~~~~~RV~vIaSG~LSH~l~~~~~~~p~~~~~~~~~~~~~~~fD~~vl~~l~~gd~~~l~~~ 238 (294)
T cd07372 159 KEGLGEMDVLGKATREAIRKTGRRAVLLASNTLSHWHFHEEPAPPEDMSKEHPETYAGYQWDMRMIELMRQGRMKEVFRL 238 (294)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcccccCccCCCCCccccccccccchhHHHHHHHHHHHHHcCCHHHHHhc
Confidence 7889999999999887 5789999999999995 2 255544 22 359999999999999999999
Q ss_pred hhhhhccc
Q psy5092 253 INRVYSIL 260 (291)
Q Consensus 253 ~~~~~~~~ 260 (291)
.+++-.--
T Consensus 239 ~~~~~~~A 246 (294)
T cd07372 239 LPQFIEEA 246 (294)
T ss_pred CHHHHHHh
Confidence 98876543
No 18
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=99.73 E-value=6.3e-17 Score=151.41 Aligned_cols=184 Identities=13% Similarity=0.063 Sum_probs=134.7
Q ss_pred HHHHHHhhC----CCCCCEEEEECCCCCCCCCceeecCCCccccC---CC----------CCCCcHHHHHHHHhcC---C
Q psy5092 87 AAFAYRQIS----PASVQRIFILGPSHYYQLGGCALSGAKKYSTP---LY----------DLKIDSQIYSELEATN---K 146 (291)
Q Consensus 87 Aa~ay~~l~----~~~p~~VVILGP~H~~~~~g~al~~~~~~~TP---LG----------~v~vD~el~~~L~~~~---~ 146 (291)
...+|+.+. ..+||+|||++|+|..... ..++.....+|. +| +.+.|.+++++|.+.. +
T Consensus 32 ~~~al~~l~~~l~~~~Pd~IVViS~H~~~~~~-~~i~~~~~~~g~~~~~g~p~~l~~~~y~~~gd~eLA~~i~~~~~~~g 110 (282)
T TIGR02298 32 AIDGHKEISRRAKEMGVDTIVVFDTHWLVNSG-YHINCNDQFSGSYTSHELPHFIQDLRYDYPGNPALGQLIADEAQEHG 110 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCcCCC-eEEecCCCCcceecCCCCChhhhCceeeCCCCHHHHHHHHHHHHHCC
Confidence 345555553 2479999999997665433 444433333332 22 2778999998887644 3
Q ss_pred cccc--cCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcC--CCCHHHHHHHHHHHHhhhc--CCCeEEEEecCCcc
Q psy5092 147 FETI--SMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVG--SLSTGREAEYGRIFAPYLA--DPRNLFVISSDFCH 220 (291)
Q Consensus 147 ~~~~--d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg--~~~~~~~~~lg~~L~~~~~--~~~~liVaSsDLSH 220 (291)
+... .......||+.-|+|.||..- .+++||||.+. ..+.++..++|++|+++++ +++++||+|+|+||
T Consensus 111 i~~~~~~~~~~~lDHG~~vPL~~l~p~-----~~ipvV~is~~~~~~~~~~~~~lG~al~~~i~~~~~rV~iIaSG~lSH 185 (282)
T TIGR02298 111 VKTLAHQVPSLGLEYGTLVPMRYMNED-----GHFKVVSIAAWCTVHDIEESRALGEAIRKAIEQSDGRVAVLASGSLSH 185 (282)
T ss_pred CceeeccCCCCCCCeehHhHHHHhCCC-----CCCcEEEEeecCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEecccce
Confidence 4332 345667999999999997643 46999999986 6789999999999999976 68999999999999
Q ss_pred cCc------CcccccCCc-----chHHHHHHHHhcChhchhhhhhhhhcc-ccccCCCCCcchhhHHHHhhc
Q psy5092 221 WGD------RFRFTYYDS-----AYGEIHQSIEALDRKSPSSSINRVYSI-LISRGPSDEEGHGLSLMEILK 280 (291)
Q Consensus 221 ~g~------~~gy~p~~~-----~D~~iie~I~~lD~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 280 (291)
+.. ++++.|... .|+.+++.++++|.+++.++.+++-.. ---| +-.+.+.+.=.|+
T Consensus 186 ~L~~~~~~~p~g~~~~a~~f~~~~D~~v~~~l~~gd~~~l~~~~~~~~~~~age~----g~~~~~~l~Gal~ 253 (282)
T TIGR02298 186 RFWDNKDLAPEGMTTIASEFNRQVDLRVLELWRERDYREFCAMLPDYAVKCNGEG----GMHDTVMLFGALG 253 (282)
T ss_pred ecCcccCCCcccCCchhhHHHHHHHHHHHHHHHcCCHHHHHHhCHHHHHhcCccc----ChHHHHHHHhccC
Confidence 987 345655432 499999999999999999999887654 3333 6666666666664
No 19
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=99.71 E-value=9.9e-17 Score=149.01 Aligned_cols=178 Identities=13% Similarity=0.201 Sum_probs=125.2
Q ss_pred EEEccCCcccccHH--HH---HHHHHhhC----CCCCCEEEEECCCCCCCC-----CceeecCCCcc------ccCCCCC
Q psy5092 72 AIISPHAGYRYCGE--CA---AFAYRQIS----PASVQRIFILGPSHYYQL-----GGCALSGAKKY------STPLYDL 131 (291)
Q Consensus 72 aiIvPHAGy~ySG~--~A---a~ay~~l~----~~~p~~VVILGP~H~~~~-----~g~al~~~~~~------~TPLG~v 131 (291)
|+.+||.-..--|. .+ ..+|+.+. ..+||+|||++|+|...+ ..+++...+.+ -.|-..+
T Consensus 7 ~~~~~H~~~~~~~~~~~~~~~~~al~~~~~~l~~~~Pd~ivvis~dH~~~~~~~~~p~~~i~~~~~~~~~~~~g~p~~~~ 86 (268)
T cd07367 7 AAATSHILMSPKGVEDQAARVVQGMAEIGRRVRESRPDVLVVISSDHLFNINLSLQPPFVVGTADSYTPFGDMDIPRELF 86 (268)
T ss_pred EEecCCcCcCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchhhhcccccCCceEEeeccccccCCcCCCCcccC
Confidence 68889952222121 12 23344442 258999999999886543 22444333333 3343368
Q ss_pred CCcHHHHHHHHhcC---CcccccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcC-----CCCHHHHHHHHHHHHh
Q psy5092 132 KIDSQIYSELEATN---KFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVG-----SLSTGREAEYGRIFAP 203 (291)
Q Consensus 132 ~vD~el~~~L~~~~---~~~~~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg-----~~~~~~~~~lg~~L~~ 203 (291)
+.|.+++++|.+.. ++..........||+.-|+|.||..- .+++||||.+. .++.+++++||++|++
T Consensus 87 ~gd~~LA~~i~~~l~~~g~~~~~~~~~~lDHG~~vPL~~l~p~-----~~iPvV~isin~~~~p~~~~~~~~~lG~al~~ 161 (268)
T cd07367 87 PGHREFARAFVRQAAEDGFDLAQAEELRPDHGVMVPLLFMGPK-----LDIPVVPLIVNINTDPAPSPRRCWALGKVLAQ 161 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeeecCccCCcchhchHHHhCCC-----CCCCEEEEEecccCCCCCCHHHHHHHHHHHHH
Confidence 89999999887643 44433233446999999999997742 57999999983 3468899999999999
Q ss_pred hhc-----CCCeEEEEecCCcccCcCcccccCC----cchHHHHHHHHhcChhchhhhhhhhh
Q psy5092 204 YLA-----DPRNLFVISSDFCHWGDRFRFTYYD----SAYGEIHQSIEALDRKSPSSSINRVY 257 (291)
Q Consensus 204 ~~~-----~~~~liVaSsDLSH~g~~~gy~p~~----~~D~~iie~I~~lD~~~l~~~~~~~~ 257 (291)
+++ +++++||+|+||||... |.+.+ .+|+.+++.++++|.+.|.++..++.
T Consensus 162 ~i~~~~~~d~rV~iiaSGgLSH~l~---~~~~~~~~~efD~~i~~~l~~gd~~~L~~~~~~~~ 221 (268)
T cd07367 162 YVEKRRPAGERVAVIAAGGLSHWLG---VPRHGEVNEAFDRMFLDLLEGGNGERLAGMGNDEI 221 (268)
T ss_pred HHHhcCCCCCcEEEEEcccccCCCC---CCcccccCHHHHHHHHHHHHcCCHHHHHhCCHHHH
Confidence 864 57899999999999862 32222 47999999999999999999986554
No 20
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=99.71 E-value=5.7e-17 Score=151.40 Aligned_cols=183 Identities=16% Similarity=0.168 Sum_probs=131.1
Q ss_pred EEEccCCcccccHH-----------HHHHHHHhhC----CCCCCEEEEECCCCCCCC--C---ceeecCCCcccc-----
Q psy5092 72 AIISPHAGYRYCGE-----------CAAFAYRQIS----PASVQRIFILGPSHYYQL--G---GCALSGAKKYST----- 126 (291)
Q Consensus 72 aiIvPHAGy~ySG~-----------~Aa~ay~~l~----~~~p~~VVILGP~H~~~~--~---g~al~~~~~~~T----- 126 (291)
|+.+||.--...+. ..-.+|..++ ..+||+|||++++|...+ + .+++......+.
T Consensus 7 a~~~sH~P~ig~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~PD~iVvi~~dH~~~f~~d~~p~f~Ig~~~~~~~~d~~~ 86 (277)
T cd07950 7 GIGSSHTPTIGFAYDKNKQNDPAWAPIFDGYEPVKQWLAEQKPDVLFMVYNDHVTSFFFDHYSAFALGVGDSYEVADEGG 86 (277)
T ss_pred hhhcCCCCccCcccccCCCchHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHhccccCCcEEEEeccccccccccc
Confidence 45677754333333 3445565553 368999999998786544 3 355543333322
Q ss_pred ---CCCCCCCcHHHHHHHHhcC---CcccccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcCCC-----CHHHHH
Q psy5092 127 ---PLYDLKIDSQIYSELEATN---KFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSL-----STGREA 195 (291)
Q Consensus 127 ---PLG~v~vD~el~~~L~~~~---~~~~~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg~~-----~~~~~~ 195 (291)
....++.|++++++|.+.. ++.......-..||+.-|+|.||..--.+ .++++|||.++.. +.+++.
T Consensus 87 ~~~~~~~~~g~~~LA~~i~~~~~~~g~~~~~~~~~~lDHG~~vPL~~l~p~~~~--~~~~vVpi~~~~~~~~l~~~~~~~ 164 (277)
T cd07950 87 GPRDLPPIRGHAALAQHIAESLVADEFDLTFFQDKPLDHGCFSPLSLLLPHEDG--WPVKVVPLQVGVLQFPLPTARRCY 164 (277)
T ss_pred CCccCCCCCCCHHHHHHHHHHHHhcCCCeeeccCCCCCceeeeeHHHhCccccc--CCCceEEEEEEeEecCCCCHHHHH
Confidence 1257899999999998754 34333234457899999999998743100 4588999987654 789999
Q ss_pred HHHHHHHhhhc----CCCeEEEEecCCcccCc--CcccccCCcchHHHHHHHHhcChhchhhhhhhhhc
Q psy5092 196 EYGRIFAPYLA----DPRNLFVISSDFCHWGD--RFRFTYYDSAYGEIHQSIEALDRKSPSSSINRVYS 258 (291)
Q Consensus 196 ~lg~~L~~~~~----~~~~liVaSsDLSH~g~--~~gy~p~~~~D~~iie~I~~lD~~~l~~~~~~~~~ 258 (291)
+||++|+++++ ++|++||+|+||||+.. ++||.+ .+.|+++++.+++ |.+++..+..+...
T Consensus 165 ~lG~al~~~i~~~~~d~rv~iIaSG~lSH~l~~~~~g~~~-~~~D~~f~~~l~~-d~~~l~~~~~~~~~ 231 (277)
T cd07950 165 KLGQALRRAIESYPEDLKVAVVGTGGLSHQVHGERAGFNN-TEWDMEFLDLIEN-DPESLAAMTHADYA 231 (277)
T ss_pred HHHHHHHHHHHhcCcCCCEEEEEcCccccCCCCCCCCCCC-HHHHHHHHHHHHh-CHHHHHcCCHHHHH
Confidence 99999999976 45899999999999975 456665 4579999999998 99999999887763
No 21
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=99.70 E-value=1.2e-16 Score=148.53 Aligned_cols=176 Identities=15% Similarity=0.062 Sum_probs=125.3
Q ss_pred EEEccCCcccccHH------HHHHHHHhhC----CCCCCEEEEECCCCCCCCCceeecCC---C--------cc-ccCCC
Q psy5092 72 AIISPHAGYRYCGE------CAAFAYRQIS----PASVQRIFILGPSHYYQLGGCALSGA---K--------KY-STPLY 129 (291)
Q Consensus 72 aiIvPHAGy~ySG~------~Aa~ay~~l~----~~~p~~VVILGP~H~~~~~g~al~~~---~--------~~-~TPLG 129 (291)
+.|+||..-.--.+ ....+|+.+. ..+||+|||++|+|.......++... + +| .-|.
T Consensus 6 ~f~~hh~P~~~~~~~~~~~~~~~~a~~~lg~~l~~~~Pd~IvviS~Hw~~~~~~~~v~~~~~~g~~~~~~~~df~g~p~- 84 (271)
T cd07373 6 AFLVPGSPLPQLRPDVPSWGQFAAATRQAGKALAASRPDVVLVYSTQWFAVLDQQWLTRPRSEGVHVDENWHEFGELPY- 84 (271)
T ss_pred EEecCCCCccccCCCcccHHHHHHHHHHHHHHHHHhCCCEEEEECCCCcccccceeEeeccccccccccChhHhcCccc-
Confidence 46677755311111 3446666664 25899999999977653444444310 0 11 2232
Q ss_pred CCCCcHHHHHHHHhcC---Cccc--ccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcCC-CCHHHHHHHHHHHHh
Q psy5092 130 DLKIDSQIYSELEATN---KFET--ISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGS-LSTGREAEYGRIFAP 203 (291)
Q Consensus 130 ~v~vD~el~~~L~~~~---~~~~--~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg~-~~~~~~~~lg~~L~~ 203 (291)
+++.|+++++++.+.. ++.. .+...-..||+.-|+|.||++-. .+++|||+.+.. .+.++++++|++|++
T Consensus 85 ~~~g~~eLA~~i~~~~~~~gi~~~~~~~~~~~lDHG~~vPL~~l~~~~----~~iPvV~~s~~~~~~~~~~~~lG~al~~ 160 (271)
T cd07373 85 DIRSDTALAEACVTACPEHGVHARGVDYDGFPIDTGTITACTLMGIGT----EALPLVVASNNLYHSGEITEKLGAIAAD 160 (271)
T ss_pred ccCCCHHHHHHHHHHHHHCCCcEEEecCCCCCCcchhHHHHHHHcccC----CCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4788999998887644 3332 23323479999999999997754 689999999976 799999999999998
Q ss_pred hhcC--CCeEEEEecCCcccCcC--------cccccCC-cchHHHHHHHHhcChhchhhh
Q psy5092 204 YLAD--PRNLFVISSDFCHWGDR--------FRFTYYD-SAYGEIHQSIEALDRKSPSSS 252 (291)
Q Consensus 204 ~~~~--~~~liVaSsDLSH~g~~--------~gy~p~~-~~D~~iie~I~~lD~~~l~~~ 252 (291)
++++ ++++||+|+|+||++.+ ++|+|+. .+|+.+++.+++.|.+++.++
T Consensus 161 ~l~~~~~rV~iIgSG~lSH~L~~~~~~~~~~~~~~p~~~~FD~~~~~~l~~gd~~~ll~~ 220 (271)
T cd07373 161 AAKDQNKRVAVVGVGGLSGSLFREEIDPREDHIANEEDDKWNRRVLKLIEAGDLPALREA 220 (271)
T ss_pred HHHHcCCeEEEEEecccccCcCcCCCcCCCCCccCccHHHHHHHHHHHHHcCCHHHHHhc
Confidence 7775 89999999999999743 3455544 369999999999999999864
No 22
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=99.69 E-value=3e-16 Score=145.67 Aligned_cols=199 Identities=10% Similarity=0.008 Sum_probs=136.7
Q ss_pred EEEccCCcccccHH------HHHHHHHhhC----CCCCCEEEEECCCCCCCCCceeecC---CC-----ccccCCCC---
Q psy5092 72 AIISPHAGYRYCGE------CAAFAYRQIS----PASVQRIFILGPSHYYQLGGCALSG---AK-----KYSTPLYD--- 130 (291)
Q Consensus 72 aiIvPHAGy~ySG~------~Aa~ay~~l~----~~~p~~VVILGP~H~~~~~g~al~~---~~-----~~~TPLG~--- 130 (291)
+.++||+-...-++ -...+++.+. ..+||+|||++|+|......+.+.. .+ .+ ..+|.
T Consensus 3 ~~l~~H~P~~~~~~~~~~~~~~~~al~~l~~~l~~~~Pd~IvviS~Hw~~~~~~~~i~~~~~~g~~~~~~~-~~~~~~~y 81 (268)
T cd07371 3 AFLVPGPPLPQLGENVPQWEPRSWAYERAGASLAASRPDVVLVYSTQWIAVLDHHWLTRPRSEGRHVDENW-PEFGRLDY 81 (268)
T ss_pred eEecCCCCcccCCCCCCcchHHHHHHHHHHHHHHHcCCCEEEEECCCCccccCcEEecccccceeecCccc-chhceeee
Confidence 57788866555222 2345666663 2479999999996666554344432 11 11 12443
Q ss_pred -CCCcHHHHHHHHhcC---Ccccc--cCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcC--CCCHHHHHHHHHHHH
Q psy5092 131 -LKIDSQIYSELEATN---KFETI--SMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVG--SLSTGREAEYGRIFA 202 (291)
Q Consensus 131 -v~vD~el~~~L~~~~---~~~~~--d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg--~~~~~~~~~lg~~L~ 202 (291)
++.|.+++++|.+.. ++... +......||+.-|+|.||..- .+.++||+.++ ..+.+++.++|++|+
T Consensus 82 ~~~g~~eLA~~i~~~~~~~gi~~~~~~~~~~~lDHG~~vPL~~l~p~-----~~ipvV~vs~~~~~~~~~~~~~lG~al~ 156 (268)
T cd07371 82 SINVDVELAEACVEEGRKAGLVTRMMRYPRFPIDTGTITALTLMRPG-----TDIPPVVISANNLYLSGEETEGEMDLAG 156 (268)
T ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEecCCCCCCCchhHHHHHHhcCC-----CCCCeEEEEecCcCCCHHHHHHHHHHHH
Confidence 778999998887643 44332 345667899999999997642 46889999875 379999999999999
Q ss_pred hhhcC--CCeEEEEecCCcccCcC-----c---ccccCCc-chHHHHHHHHhcChhchhhhhhhhhccccccCCCCCcch
Q psy5092 203 PYLAD--PRNLFVISSDFCHWGDR-----F---RFTYYDS-AYGEIHQSIEALDRKSPSSSINRVYSILISRGPSDEEGH 271 (291)
Q Consensus 203 ~~~~~--~~~liVaSsDLSH~g~~-----~---gy~p~~~-~D~~iie~I~~lD~~~l~~~~~~~~~~~~~~~~~~~~~~ 271 (291)
+.+++ ++++||+|+|+||+..+ + +|.|..+ +|+.+++.+++.|.+++.++.+++.+- +|+--+..|
T Consensus 157 ~~l~~~~~rv~iIgSG~lsH~l~~~~~~~~~~~~~~~~~~~fD~~~~~~~~~gd~~~l~~~~~~~~~~---a~~~~g~~~ 233 (268)
T cd07371 157 KATRDAGKRVAVLGSGGLSHSHFHEEIDPPKDHIESEEGDKWNRRMLELMEQGDMSALFELLPQYIKE---ARADMGSKA 233 (268)
T ss_pred HHHHHcCCcEEEEEecCccccccCCCCCcccccccchhhHHHHHHHHHHHHcCCHHHHHhcCHHHHHH---hcccccHHH
Confidence 88775 89999999999999742 1 3445543 699999999999999999977554333 333234455
Q ss_pred hhHHHHhh
Q psy5092 272 GLSLMEIL 279 (291)
Q Consensus 272 ~~~~~~~~ 279 (291)
.+-++=.+
T Consensus 234 ~~~l~gal 241 (268)
T cd07371 234 FTWMLGAM 241 (268)
T ss_pred HHHHHHhc
Confidence 55544444
No 23
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=99.69 E-value=1.6e-16 Score=148.29 Aligned_cols=163 Identities=15% Similarity=0.136 Sum_probs=119.6
Q ss_pred HHHHhhC----CCCCCEEEEECCCCCCCC--C---ceeecCCCcccc-------C-CCCCCCcHHHHHHHHhcC---Ccc
Q psy5092 89 FAYRQIS----PASVQRIFILGPSHYYQL--G---GCALSGAKKYST-------P-LYDLKIDSQIYSELEATN---KFE 148 (291)
Q Consensus 89 ~ay~~l~----~~~p~~VVILGP~H~~~~--~---g~al~~~~~~~T-------P-LG~v~vD~el~~~L~~~~---~~~ 148 (291)
.+|..++ ..+||+|||+++.|...+ + .+++.....+.+ | -.+++.|.+++++|.+.. ++.
T Consensus 35 ~a~~~~~~~v~~~~PD~iVvis~dH~~~f~~~~~p~f~i~~~~~~~g~~~~~g~~~~~~~~g~~~LA~~i~~~~~~~g~d 114 (276)
T cd07949 35 DGFPPVHDWLEKAKPDVAVVFYNDHGLNFFLDKMPTFAVGAAPSYRNADEGWGIPALAPFKGDPELSWHLIESLVEDEFD 114 (276)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcHHhhhccccCCcEEEecCccccCcccccCCCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 5565553 468999999997785544 2 456653333332 2 256899999999987654 444
Q ss_pred cccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcCC-----CCHHHHHHHHHHHHhhhc----CCCeEEEEecCCc
Q psy5092 149 TISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGS-----LSTGREAEYGRIFAPYLA----DPRNLFVISSDFC 219 (291)
Q Consensus 149 ~~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg~-----~~~~~~~~lg~~L~~~~~----~~~~liVaSsDLS 219 (291)
......-..||+.-|+|.||+.-. + .+++||||.++. .+.+++++||++|+++++ +++++||+|+|||
T Consensus 115 ~~~~~~~~lDHG~~vPL~~l~~~~-d--~~~pvV~i~~n~~~~p~~~~~~~~~lG~al~~~i~~~~~d~rv~iiaSG~lS 191 (276)
T cd07949 115 ITTCQEMLVDHACTLPMQLFWPGA-E--WPIKVVPVSINTVQHPLPSPKRCFKLGQAIGRAIESYPEDLRVVVLGTGGLS 191 (276)
T ss_pred eeccCCCCCCcchhhHHHHhcCcc-C--CCCCEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCccc
Confidence 333345678999999999987532 0 258999999973 378999999999999876 3689999999999
Q ss_pred ccCc--CcccccCCcchHHHHHHHHhcChhchhhhhhhh
Q psy5092 220 HWGD--RFRFTYYDSAYGEIHQSIEALDRKSPSSSINRV 256 (291)
Q Consensus 220 H~g~--~~gy~p~~~~D~~iie~I~~lD~~~l~~~~~~~ 256 (291)
|+.. ++||.+ ..+|+.+++.++ .|.+++.++.+++
T Consensus 192 H~l~~~~~g~~~-~~fD~~~~~~l~-~d~~~L~~~~~~~ 228 (276)
T cd07949 192 HQLDGERAGFIN-KDFDRYCLDKMV-DNPEWLTKYSIEE 228 (276)
T ss_pred cCCCCCCcccch-HHHHHHHHHHHh-cCHHHHHcCCHHH
Confidence 9963 355543 457999999999 4988888887443
No 24
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=99.69 E-value=2.9e-16 Score=146.81 Aligned_cols=169 Identities=14% Similarity=0.165 Sum_probs=123.8
Q ss_pred HHHHHHHhhC----CCCCCEEEEECCCCCCCC--Cc---eeecCCCcc-----ccCCC---CCCCcHHHHHHHHhcC---
Q psy5092 86 CAAFAYRQIS----PASVQRIFILGPSHYYQL--GG---CALSGAKKY-----STPLY---DLKIDSQIYSELEATN--- 145 (291)
Q Consensus 86 ~Aa~ay~~l~----~~~p~~VVILGP~H~~~~--~g---~al~~~~~~-----~TPLG---~v~vD~el~~~L~~~~--- 145 (291)
..-.+|..+. ..+||+|||+|++|...+ +. +++.....+ -.|-. +++.|.+++++|.+..
T Consensus 32 ~~~~a~~~i~~~v~~~~PDviVvi~sdH~~~f~~d~~p~f~Ig~~~~~~~~~~g~~~~~~~~~~g~~eLA~~i~~~~~~~ 111 (279)
T PRK13365 32 PLFDGYEPVAAWLAEQKADVLVFFYNDHCTTFFFDLYPTFALGVGERFPVADEGAGLRPLPPIRGDVQLQAHIAECLVND 111 (279)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEcCchHHHhccccCCceEEEecccccccccccCCCCCCCCCCCHHHHHHHHHHHHHc
Confidence 4445565553 368999999998897655 43 554433333 12222 3888999999997654
Q ss_pred CcccccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcC-----CCCHHHHHHHHHHHHhhhc----CCCeEEEEec
Q psy5092 146 KFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVG-----SLSTGREAEYGRIFAPYLA----DPRNLFVISS 216 (291)
Q Consensus 146 ~~~~~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg-----~~~~~~~~~lg~~L~~~~~----~~~~liVaSs 216 (291)
++.......-..||+.-|+|.||+.-..+ .++|+|||.++ ..+.++++++|++|+++++ +++++||+|+
T Consensus 112 g~~~~~~~~~~lDHG~~vPL~~l~~~~~~--~~~pvVpi~in~~~~p~~~~~~~~~lG~al~~~i~~~~~d~rV~iIaSG 189 (279)
T PRK13365 112 EFDLTVFQDKPIDHGCAAPLPLLWPHVPD--WPGTVVPIAINVLQYPLPTARRCYRLGQALRRAIESYPEDLRVVVVGTG 189 (279)
T ss_pred CCCeeeccCCCCCchhhhHHHHhCCcccc--CCCCeEEEEEecccCCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeC
Confidence 34332233466899999999998742101 35889999876 4578999999999999985 5699999999
Q ss_pred CCcccCc--CcccccCCcchHHHHHHHHhcChhchhhhhhhhhc
Q psy5092 217 DFCHWGD--RFRFTYYDSAYGEIHQSIEALDRKSPSSSINRVYS 258 (291)
Q Consensus 217 DLSH~g~--~~gy~p~~~~D~~iie~I~~lD~~~l~~~~~~~~~ 258 (291)
||||+.. ++||.+ ...|+++++.++. |.+++..+..+...
T Consensus 190 ~LSH~l~~~~~g~~~-~~~D~~f~~~l~~-d~~~l~~~~~~~~~ 231 (279)
T PRK13365 190 GLSHQIHGERSGFNN-TEWDMEFLDRFQH-APETLTDLTHTDYV 231 (279)
T ss_pred ccccCCCCCCccCCC-HHHHHHHHHHHhh-CHHHHHcCCHHHHH
Confidence 9999975 577765 4579999999985 99999999886654
No 25
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=99.68 E-value=3.7e-16 Score=149.43 Aligned_cols=151 Identities=17% Similarity=0.182 Sum_probs=111.9
Q ss_pred CCCCCEEEEECCCCCCCC-----CceeecCCCcccc-------------------------CCCCCCCcHHHHHHHHhcC
Q psy5092 96 PASVQRIFILGPSHYYQL-----GGCALSGAKKYST-------------------------PLYDLKIDSQIYSELEATN 145 (291)
Q Consensus 96 ~~~p~~VVILGP~H~~~~-----~g~al~~~~~~~T-------------------------PLG~v~vD~el~~~L~~~~ 145 (291)
..+||+|||+||+|...+ ..+++........ +-.+++.|.+++++|.+..
T Consensus 86 ~~~PDvlViispdh~~~F~~~~~p~f~I~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gd~eLA~~I~~~l 165 (335)
T PRK13363 86 AARIDVAVIVGNDQMELFTTDNNPAFAIYYGETIRNNPASREKLPSLPPGVKAAMPGYMPDAETTYPVVPELARHMIRRL 165 (335)
T ss_pred HhCCCEEEEEcCCchhhcccccCCceEEeecceeccchhhccccccccccccccccccCCCCCcCCCCCHHHHHHHHHHH
Confidence 468999999999994443 4466654444433 1255888999999987654
Q ss_pred ---Ccccc--cCC--CCCCCcchhchHHHHHHHhhccCCCcEEEEEEcC------CCCHHHHHHHHHHHHhhhc----CC
Q psy5092 146 ---KFETI--SMD--VDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVG------SLSTGREAEYGRIFAPYLA----DP 208 (291)
Q Consensus 146 ---~~~~~--d~~--~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg------~~~~~~~~~lg~~L~~~~~----~~ 208 (291)
++... ++. .+..||++-+++- +++++ .+++||||.++ .++.+++.++|++|+++++ ++
T Consensus 166 ~~~G~d~~~~~~~~~~~glDHG~~~pl~---~l~p~--~dipVVpIsl~~~~~P~~~s~~~~~~lG~aL~~~i~~~~~d~ 240 (335)
T PRK13363 166 VDDGFDITALDRLPDGEGEGHAFGFVHR---QLMKD--NVLPTVPVLVNTFYPPNQPTPRRCIALGRSLRRAIRSWPEDA 240 (335)
T ss_pred HHcCCCeeeecccccccCCCccchhhHH---HhcCC--CCCcEEEEEeccCCCcCCCCHHHHHHHHHHHHHHHHhcCcCC
Confidence 34332 111 1237999655543 34433 57999999997 3677999999999999875 37
Q ss_pred CeEEEEecCCcccCcCcccccCCcchHHHHHHHHhcChhchhhhhhhhh
Q psy5092 209 RNLFVISSDFCHWGDRFRFTYYDSAYGEIHQSIEALDRKSPSSSINRVY 257 (291)
Q Consensus 209 ~~liVaSsDLSH~g~~~gy~p~~~~D~~iie~I~~lD~~~l~~~~~~~~ 257 (291)
+++||+||||||+.. ...+|+.++++|+++|.++|.++.++..
T Consensus 241 rVlIIaSGdLSH~l~------~~efD~~~l~~l~~~D~~~L~~~~~~~~ 283 (335)
T PRK13363 241 RVAVIASGGLSHFVI------DEELDRLIIDAIRAKDFAALASLDEAIL 283 (335)
T ss_pred CEEEEEeCccccCCc------HHHHHHHHHHHHHcCCHHHHHccCHHHH
Confidence 899999999999853 3467999999999999999999988766
No 26
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=99.67 E-value=4.3e-16 Score=148.62 Aligned_cols=158 Identities=14% Similarity=0.156 Sum_probs=117.6
Q ss_pred CCCCCEEEEECCCCCC-CCC----ceeecCCCccccCCC----CCC--------CcHHHHHHHHhcC---CcccccCCCC
Q psy5092 96 PASVQRIFILGPSHYY-QLG----GCALSGAKKYSTPLY----DLK--------IDSQIYSELEATN---KFETISMDVD 155 (291)
Q Consensus 96 ~~~p~~VVILGP~H~~-~~~----g~al~~~~~~~TPLG----~v~--------vD~el~~~L~~~~---~~~~~d~~~h 155 (291)
..+||+|||+++.|.. ++. .+++.....+++++| ... .|++++++|.+.. ++.......-
T Consensus 44 ~~~PD~iVV~~sdH~~~~f~d~~P~f~I~~~~~~~G~~~~~~~~~~~~~~~~~~gd~eLA~~I~~~l~~~G~dva~~~~~ 123 (329)
T cd07369 44 AARPDVIIAFLDDHFENHFRTNMPTIAIGVAESHSGPADQLMEALRVPKKHYFPGNPEVAEQLLRALVHDSFDCARMGEI 123 (329)
T ss_pred HhCCCEEEEEcCCchhhhccccCccEEEeecceeeccchhccccCCCCcccCCCCCHHHHHHHHHHHHHCCCCeeecCCc
Confidence 3689999999888976 333 367766666666643 344 4999999987644 3433222233
Q ss_pred CCCcchhchHHHHHHHhhccCCCcEEEEEEc-----CCCCHHHHHHHHHHHHhhhc----CCCeEEEEecCCcccC----
Q psy5092 156 EEEHSLEMQIPYIAKVMEDFKNEFTIVPVMV-----GSLSTGREAEYGRIFAPYLA----DPRNLFVISSDFCHWG---- 222 (291)
Q Consensus 156 ~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~v-----g~~~~~~~~~lg~~L~~~~~----~~~~liVaSsDLSH~g---- 222 (291)
..+|++-|+|.||... .++++|||.+ +..+.+++++||++|+++++ |+|++||+|+|||||-
T Consensus 124 ~~DHG~~vPL~~l~p~-----~~ipvVpI~in~~~~p~~~~~r~~~lG~AI~~aie~~~~d~rVaiIaSG~LSH~p~~~~ 198 (329)
T cd07369 124 EYGNNLLVPWKLMKPD-----LDVSVIPIYTNVFSPPLMKYSRAYALGAAVRKAIEDLPDDLRVAFMATGGLSHWPPYWN 198 (329)
T ss_pred CCCccceeeHHHhcCC-----CCCcEEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCcccc
Confidence 4699999999997642 3689999944 33678999999999999986 4799999999999942
Q ss_pred -------------c---Cccc-------------------------------ccC-C-cchHHHHHHHHhcChhchhhhh
Q psy5092 223 -------------D---RFRF-------------------------------TYY-D-SAYGEIHQSIEALDRKSPSSSI 253 (291)
Q Consensus 223 -------------~---~~gy-------------------------------~p~-~-~~D~~iie~I~~lD~~~l~~~~ 253 (291)
. .+|| +|. + ..|+.+++.++++|.+.+.++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~fD~~~l~~l~~gd~~~l~~~~ 278 (329)
T cd07369 199 PNQPETDPFLQRMKEYQTYGKPVLEKDPNLFVDLAAYEIEMAKKNQWPLNSKHPLVNAAWDRKFLKAYCRGDSEWLKNLT 278 (329)
T ss_pred ccchhhhhhhhhccccCcCCcCcchhhhhhhhhhhhhhhhhhhhhcccccccCCccCHHHHHHHHHHHHcCCHHHHHcCC
Confidence 1 4777 553 3 3699999999999999999998
Q ss_pred hhhhc
Q psy5092 254 NRVYS 258 (291)
Q Consensus 254 ~~~~~ 258 (291)
+++..
T Consensus 279 ~~~~~ 283 (329)
T cd07369 279 YEEVE 283 (329)
T ss_pred HHHHH
Confidence 66543
No 27
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=99.64 E-value=2e-15 Score=141.48 Aligned_cols=158 Identities=13% Similarity=0.095 Sum_probs=115.1
Q ss_pred CCCCCEEEEECCCCCCCCCc-----eeecCC---CccccCCCC-----CCCcHHHHHHHHhcC---CcccccCCCCCCCc
Q psy5092 96 PASVQRIFILGPSHYYQLGG-----CALSGA---KKYSTPLYD-----LKIDSQIYSELEATN---KFETISMDVDEEEH 159 (291)
Q Consensus 96 ~~~p~~VVILGP~H~~~~~g-----~al~~~---~~~~TPLG~-----v~vD~el~~~L~~~~---~~~~~d~~~h~~EH 159 (291)
..+||+|||++++|...+.. +++... ..+..++|. ++.|.+++++|.+.. ++.......-..||
T Consensus 46 ~~~PDvvVii~~dH~~~f~~d~~P~f~Ig~~~~~~~~~~~~g~~~v~~~~g~~eLA~~i~~~l~~~g~~~~~~~~~~lDH 125 (284)
T PRK13366 46 EEKPDVIFLVYNDHATAFSLDIIPTFAIGTAAEYQPADEGWGPRPVPKVIGHPDLAAHIAQSVIQDDFDLTIVNKMDVDH 125 (284)
T ss_pred HhCCCEEEEEcCCcHHhhcccCCCceEEeeCceecCcccccCCCCCCCCCCCHHHHHHHHHHHHHCCCCEeecCCCCCCc
Confidence 36899999999999875532 454332 344556674 555699988887644 44433233456899
Q ss_pred chhchHHHHHHHhhccCCCcEEEEEEcC-----CCCHHHHHHHHHHHHhhhc----CCCeEEEEecCCcccCc--Ccccc
Q psy5092 160 SLEMQIPYIAKVMEDFKNEFTIVPVMVG-----SLSTGREAEYGRIFAPYLA----DPRNLFVISSDFCHWGD--RFRFT 228 (291)
Q Consensus 160 SiEVqLPFLq~~~~~~~~~~~IVPI~vg-----~~~~~~~~~lg~~L~~~~~----~~~~liVaSsDLSH~g~--~~gy~ 228 (291)
+.-|+|.||..--.+ .++++|||.++ ..+.+++++||++|+++++ +++++||+|+||||+.. ++||.
T Consensus 126 G~~vPL~~l~p~~~~--~~ipvVpisvn~~~~p~~~~~r~~~lG~al~~~i~~~~~d~rV~iIaSGgLSH~l~~p~~g~~ 203 (284)
T PRK13366 126 GLTVPLSLMCGQPDA--WPCPVIPFAVNVVQYPVPSGRRCFALGQAIRRAVESYDEDLNVQIWGTGGMSHQLQGPRAGLI 203 (284)
T ss_pred cHHHHHHHhCccccC--CCCceEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEecCccccCCCCCCCCCC
Confidence 999999887642100 24899999553 3478999999999999985 46799999999999954 36654
Q ss_pred cCCcchHHHHHHHHhcChhchhhhhhhhh
Q psy5092 229 YYDSAYGEIHQSIEALDRKSPSSSINRVY 257 (291)
Q Consensus 229 p~~~~D~~iie~I~~lD~~~l~~~~~~~~ 257 (291)
...+|+.+++.+++ |.+++..+.++++
T Consensus 204 -~~~fD~~~l~~l~~-d~~~l~~l~~~~~ 230 (284)
T PRK13366 204 -NREWDNAFLDRLIA-DPDGLSKMPHIDY 230 (284)
T ss_pred -cHHHHHHHHHHHhc-CHHHHHcCCHHHH
Confidence 33579999999988 9999999887544
No 28
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame
Probab=99.61 E-value=7.1e-15 Score=136.88 Aligned_cols=182 Identities=10% Similarity=0.069 Sum_probs=125.7
Q ss_pred HHHHhhC----CCCCCEEEEECCCCCCCCCce--eecC----CCc-------cccCCCCCCCcHHHHHHHHhcC---Ccc
Q psy5092 89 FAYRQIS----PASVQRIFILGPSHYYQLGGC--ALSG----AKK-------YSTPLYDLKIDSQIYSELEATN---KFE 148 (291)
Q Consensus 89 ~ay~~l~----~~~p~~VVILGP~H~~~~~g~--al~~----~~~-------~~TPLG~v~vD~el~~~L~~~~---~~~ 148 (291)
.+|+.+. ..+||+|||++|+|....... ..+. .+. ++-++ +++.|.+++++|.+.. ++.
T Consensus 30 ~a~~~l~~~l~~~~Pd~IvvvS~Hw~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~y-~~~g~~~LA~~i~~~l~~~Gi~ 108 (272)
T cd07362 30 KGMKEIRKRIEELKPDVILVISCHWMSSSFHHFVDATPRHGGLTAVECPDLISDVPY-DYPGDPELGRLLVEEGQEAGLR 108 (272)
T ss_pred HHHHHHHHHhhHcCCCEEEEECCCcccccceeeeccCccccccccCcCCchhhcccc-CCCCCHHHHHHHHHHHHHcCCc
Confidence 5665553 248999999999766554111 1110 011 12232 5889999999887653 343
Q ss_pred cc--cCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcCC--CCHHHHHHHHHHHHhhhc--CCCeEEEEecCCcccC
Q psy5092 149 TI--SMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGS--LSTGREAEYGRIFAPYLA--DPRNLFVISSDFCHWG 222 (291)
Q Consensus 149 ~~--d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg~--~~~~~~~~lg~~L~~~~~--~~~~liVaSsDLSH~g 222 (291)
.. .+.....||+.-|+|.||+.- .+++||||.++. .+.+++.++|++|+++++ +++++||+|+|+||+.
T Consensus 109 ~~~~~~~~~~lDHG~~vPL~~l~p~-----~~iPVV~vs~~~~~~~~~~~~~lG~ai~~al~~~~~rv~ii~SG~lsH~l 183 (272)
T cd07362 109 VKAVNDPTYIWDYGTVVPLRYLNPN-----KDIPVVSISACWTAASLEESYTWGEVIGKALLESDKRVVFLASGSLSHNL 183 (272)
T ss_pred eeeccCCCCCCCcchHHHHHHhCCC-----CCCcEEEEeccCCCCCHHHHHHHHHHHHHHHHhhCCCEEEEEeCcccccC
Confidence 32 333567999999999997632 579999999985 899999999988888776 6899999999999998
Q ss_pred cCcc--------c-ccCC-cchHHHHHHHHhcChhchhhhhhhhhccccccCCCCCcchhhHHHHhh
Q psy5092 223 DRFR--------F-TYYD-SAYGEIHQSIEALDRKSPSSSINRVYSILISRGPSDEEGHGLSLMEIL 279 (291)
Q Consensus 223 ~~~g--------y-~p~~-~~D~~iie~I~~lD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (291)
...+ | +|.. .+|+.+++.+++.|.+++..+..++.+--. +-++-.+.+.++=.+
T Consensus 184 ~~~~~~~~g~~~~~~~~~~~fD~~i~~~l~~gd~~~l~~~~~~~~~~A~---~e~g~~~~~~~~g~~ 247 (272)
T cd07362 184 VRGPEAEEGMNHYPSLAEQQMDRRFIQLLREGQFQEACNMLPQYARAAG---VESGGRHLTVMLGVM 247 (272)
T ss_pred CCCCCCcccccCCCChhHHHHHHHHHHHHHcCCHHHHHHhCHHHHHHhc---CCcccHHHHHHHHHh
Confidence 5422 2 1222 369999999999999999998877665433 222444544444433
No 29
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=99.60 E-value=5.3e-15 Score=138.22 Aligned_cols=156 Identities=11% Similarity=0.113 Sum_probs=113.1
Q ss_pred CCCCCEEEEECCCCCCCCCc-----eeecCCCccc--------cCCCCCCCcHHHHHHHHhcC---CcccccCCCCCCCc
Q psy5092 96 PASVQRIFILGPSHYYQLGG-----CALSGAKKYS--------TPLYDLKIDSQIYSELEATN---KFETISMDVDEEEH 159 (291)
Q Consensus 96 ~~~p~~VVILGP~H~~~~~g-----~al~~~~~~~--------TPLG~v~vD~el~~~L~~~~---~~~~~d~~~h~~EH 159 (291)
..+||+|||+|++|...+.. +++....... -+.-+++.|.+++++|.+.. ++.......-..||
T Consensus 46 ~~~pD~vVvi~~dH~~~f~~~~~P~f~i~~~~~~~~~~~~~g~~~~~~~~g~~~LA~~i~~~~~~~g~~~~~~~~~~lDH 125 (277)
T cd07364 46 KNKPDVAIIVYNDHASAFDLDIIPTFAIGTAEEFQPADEGYGPRPVPDVQGHPDLAWHIAQSLILDDFDMTIVNEMDVDH 125 (277)
T ss_pred HhCCCEEEEEcCchHHhhcccCCCceEEeeccccccCccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCCc
Confidence 36899999999999876543 5554333222 11125889999999987654 44433223347999
Q ss_pred chhchHHHHHHHhhccCCCcEEEEEEcCC-----CCHHHHHHHHHHHHhhhc----CCCeEEEEecCCcccCcC--cccc
Q psy5092 160 SLEMQIPYIAKVMEDFKNEFTIVPVMVGS-----LSTGREAEYGRIFAPYLA----DPRNLFVISSDFCHWGDR--FRFT 228 (291)
Q Consensus 160 SiEVqLPFLq~~~~~~~~~~~IVPI~vg~-----~~~~~~~~lg~~L~~~~~----~~~~liVaSsDLSH~g~~--~gy~ 228 (291)
+.-|+|.||..-..+ .+++|||+.++. .+.++++++|++|+++++ +++++||+|+|+||+... +++.
T Consensus 126 G~~vPL~~l~p~~~~--~p~pVV~vsvn~~~~p~~~~~~~~~lG~al~~~i~~~~rd~rV~iIaSG~lSH~L~~~~~g~~ 203 (277)
T cd07364 126 GLTVPLSIMYGQPEA--WPCKVIPLCVNVVQYPQPTGKRCFALGKAIRRAVESYDEDLKVAIWGTGGMSHQLQGERAGLI 203 (277)
T ss_pred chhhhHHHhCCcccc--CCCCeEEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEecCccccCCCCCCccCc
Confidence 999999998652101 347899987754 478899999999999976 467999999999999754 3322
Q ss_pred cCCcchHHHHHHHHhcChhchhhhhhh
Q psy5092 229 YYDSAYGEIHQSIEALDRKSPSSSINR 255 (291)
Q Consensus 229 p~~~~D~~iie~I~~lD~~~l~~~~~~ 255 (291)
...+|+.+++.+++ |.+++..+.++
T Consensus 204 -~~eFD~~i~~~l~~-d~~~l~~~~~~ 228 (277)
T cd07364 204 -NKEFDNRFLDKLIS-DPEGLAKMPHI 228 (277)
T ss_pred -hHHHHHHHHHHHHh-CHHHHHcCCch
Confidence 23479999999998 99888888753
No 30
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=99.59 E-value=7.7e-15 Score=140.07 Aligned_cols=168 Identities=18% Similarity=0.200 Sum_probs=118.8
Q ss_pred CCCCCEEEEECCCCCCCCC-----ceeecCCCccc-----------------------cCCCCCCCcHHHHHHHHhcC--
Q psy5092 96 PASVQRIFILGPSHYYQLG-----GCALSGAKKYS-----------------------TPLYDLKIDSQIYSELEATN-- 145 (291)
Q Consensus 96 ~~~p~~VVILGP~H~~~~~-----g~al~~~~~~~-----------------------TPLG~v~vD~el~~~L~~~~-- 145 (291)
..+||+|||+||+|...+. .+++...+... .+-.+++.|.+++++|.+..
T Consensus 84 ~~~PDvlVIispDH~~~f~~~~~P~f~I~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~eLA~~I~~~l~~ 163 (328)
T cd07366 84 AARIDVAVIVGDDQKELFDEALLPAFAIYYGDTITNGPRTREQLDRMPPHEAAAGYAPDEARTYPCHPELARHLIKHTVA 163 (328)
T ss_pred HhCCCEEEEEcCccHhhhccccCCceEEeecceeecChhhccccccccccccccccCCCCCcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999985443 35665333322 24456889999999997654
Q ss_pred -Ccccc--cC--CCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcCC------CCHHHHHHHHHHHHhhhc----CCCe
Q psy5092 146 -KFETI--SM--DVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGS------LSTGREAEYGRIFAPYLA----DPRN 210 (291)
Q Consensus 146 -~~~~~--d~--~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg~------~~~~~~~~lg~~L~~~~~----~~~~ 210 (291)
++... ++ ..+..+|++-+++ ++++++ .+++||||.++. .+.+++++||++|+++++ ++++
T Consensus 164 ~G~dv~~~~~~~~~~~lDHG~~~~l---~~~~p~--~~iPVVpisin~~~~p~~ps~~r~y~lG~aL~~ai~~~~~d~rV 238 (328)
T cd07366 164 DGFDVAALDHLPDTVGIPHAFGFIY---RRIMGD--LVIPVVPVLINTFYPPNQPSARRCFEFGRAVARAIRSWPGDARV 238 (328)
T ss_pred cCCCeeeecccCcccCCCcchhhHH---HHhcCC--CCCcEEEEeecCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 34332 11 1224699955543 344533 478999999865 477899999999999985 6799
Q ss_pred EEEEecCCcccCcCcccccCCcchHHHHHHHHhcChhchhhhhhhhhccccccCCCCCcchhhHHHHhh
Q psy5092 211 LFVISSDFCHWGDRFRFTYYDSAYGEIHQSIEALDRKSPSSSINRVYSILISRGPSDEEGHGLSLMEIL 279 (291)
Q Consensus 211 liVaSsDLSH~g~~~gy~p~~~~D~~iie~I~~lD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (291)
+||+|+||||+.. ...+|+.+++.+++.|.+.|..+..+... -| ..|.-.-+.++-.+
T Consensus 239 ~IIaSGgLSH~l~------~~eFD~~~l~~l~~gD~~~L~~~~~~~~~----aG-~~elr~wi~~~GAl 296 (328)
T cd07366 239 GVIASGGLSHFVI------DEEFDRRILDALRNRDAEFLSSLPEAHLQ----SG-TSELKNWIAAAGAL 296 (328)
T ss_pred EEEEeCccccCCC------hHHHHHHHHHHHHcCCHHHHHcCCHHHHh----cc-chhHHHHHHHHHhh
Confidence 9999999999842 24579999999999999999998887732 22 23444445555555
No 31
>PF02900 LigB: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro: IPR004183 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A and B. Enzymes that belong to the extradiol class III family include Protocatechuate 4,5-dioxygenase (4,5-PCD; LigAB) (1.13.11.8 from EC) []; and 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarBaBb) []. The crystal structure of dioxygenase LigAB revealed that the molecule is an alpha2beta2 tetramer. The active site contains a non-heme iron coordinated by His12, His61, Glu242, and a water molecule located in a deep cleft of the beta subunit, which is covered by the alpha subunit []. This entry represents the structural domain of subunit B.; GO: 0008198 ferrous iron binding, 0016491 oxidoreductase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2PW6_A 1B4U_D 1BOU_B.
Probab=99.56 E-value=1.2e-15 Score=141.01 Aligned_cols=188 Identities=13% Similarity=0.130 Sum_probs=119.0
Q ss_pred EEEccCCcccccH---------HHHHHHHHhh----CCCCCCEEEEECCCCCCCC----C-ceeecCCC------ccc--
Q psy5092 72 AIISPHAGYRYCG---------ECAAFAYRQI----SPASVQRIFILGPSHYYQL----G-GCALSGAK------KYS-- 125 (291)
Q Consensus 72 aiIvPHAGy~ySG---------~~Aa~ay~~l----~~~~p~~VVILGP~H~~~~----~-g~al~~~~------~~~-- 125 (291)
++.+||.+..... +....+|+.+ ...+||+|||+||+|...+ . .+++.... ++.
T Consensus 2 ~~~~sHgp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pd~ivvis~h~~~~f~~~~~p~~~v~~~~~~~~~~d~~gf 81 (272)
T PF02900_consen 2 AYFISHGPPMLPLEDPEPEGKWQRTFAALQELGRRLREAKPDVIVVISPHWFTNFFEDNMPAFAVGSGEEPEGIYDFYGF 81 (272)
T ss_dssp EEEEE--HHHHHCCH-CCCCCCHHHHHHHHHHHHHCHSTS-SEEEEEEEEECCS--TTCEECBEEE-SSEE-B-BS----
T ss_pred EEEEeCCCccccccCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCcchhhcccCCccEEEecCCCcccccccccc
Confidence 4566776554311 1122345444 3468999999999887621 1 22343221 221
Q ss_pred -----cCCCCCCCcHHHHHHHHhcC---CcccccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcCC-----CCHH
Q psy5092 126 -----TPLYDLKIDSQIYSELEATN---KFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGS-----LSTG 192 (291)
Q Consensus 126 -----TPLG~v~vD~el~~~L~~~~---~~~~~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg~-----~~~~ 192 (291)
.+=..++.|.+++++|.+.. ++..........||++-|+|-||..- .+.++|||.+.. .+.+
T Consensus 82 p~~~~~~~~~~~g~~~la~~i~~~l~~~g~~~~~~~~~~lDHG~~vPL~~l~p~-----~~~Pvv~is~~~~~~p~~~~~ 156 (272)
T PF02900_consen 82 PPELYEIKYPAPGDPELAERIAEHLRKAGFDVAASPERGLDHGVWVPLYFLFPD-----ADIPVVPISINSFAPPSPSPE 156 (272)
T ss_dssp -SSSBSSS--EEB-HHHHHHHHHHHHHTTS-EEECSS--B-HHHHHHHHHHCTT------SSEEEEEEEETSSS-TS-HH
T ss_pred cccccccCCCCCCCHHHHHHHHHHHHhcCCCEEeccCcCCccccceeeeecccc-----cCcceeeeEeecccccCCCHH
Confidence 23345889999998887643 45533356678999999999887542 479999999964 7899
Q ss_pred HHHHHHHHHHhhhc--CCCeEEEEecCCcccCcC---ccccc-CC-cchHHHHHHHHhcChhchhhhhhhhhccccccC
Q psy5092 193 REAEYGRIFAPYLA--DPRNLFVISSDFCHWGDR---FRFTY-YD-SAYGEIHQSIEALDRKSPSSSINRVYSILISRG 264 (291)
Q Consensus 193 ~~~~lg~~L~~~~~--~~~~liVaSsDLSH~g~~---~gy~p-~~-~~D~~iie~I~~lD~~~l~~~~~~~~~~~~~~~ 264 (291)
++.++|++|+++.+ +++++||+|+|+||+... +++.+ .. .+|+.+++.+++.|.++|.++..+..+....-|
T Consensus 157 ~~~~lG~aL~~~~~~~~~rv~vi~SG~lsH~l~~~~~~~~~~~~~~~fD~~i~~~l~~gd~~~l~~~~~~~~~~~~~~~ 235 (272)
T PF02900_consen 157 RHYRLGRALRKARESSDERVAVIASGGLSHNLRDPRPGGYDPPWAEEFDEWILDALESGDLEALLDLDDEEPEAAAAHP 235 (272)
T ss_dssp HHHHHHHHHHHHHHTSGGCEEEEEEE-SS--TTSTTTTS---CHHHHHHHHHHCCCCH-HHHTCTTGGHCCHCHHHHGC
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeCCcccCCCcccccchhhHhHHHHHHHHHHHHHcCChHHHhhcChhhHHHHhCCC
Confidence 99999999999986 689999999999999865 33333 22 369999999999999999999887766665554
No 32
>PRK13367 protocatechuate 4,5-dioxygenase; Provisional
Probab=99.53 E-value=7.8e-14 Score=136.43 Aligned_cols=158 Identities=15% Similarity=0.154 Sum_probs=115.7
Q ss_pred CCCCCEEEEECCCCCCCCC-----ceeecCCCccccCCC---------CCCCcHHHHHHHHhcC---CcccccCCCCCCC
Q psy5092 96 PASVQRIFILGPSHYYQLG-----GCALSGAKKYSTPLY---------DLKIDSQIYSELEATN---KFETISMDVDEEE 158 (291)
Q Consensus 96 ~~~p~~VVILGP~H~~~~~-----g~al~~~~~~~TPLG---------~v~vD~el~~~L~~~~---~~~~~d~~~h~~E 158 (291)
..+||.|||++|+|...+. .+++-....+ +|.+ .++.+.+++++|.+.. +++.........|
T Consensus 46 ~~~PDvvVv~~nDH~~~Ff~d~~P~F~IG~~~~~-~~~D~~g~P~~ly~~~G~peLA~~I~~~L~~~gfD~a~~~~~~lD 124 (420)
T PRK13367 46 EKKPDVLLYIFNDHVTSFFFDHYSAFALGIDEQY-AVADEGGGPRDLPPVRGHAALSRHIGASLMADEFDMSFFQDKPLD 124 (420)
T ss_pred HhCCCEEEEEccchhhhcCcccCCCeEEEecccc-cccccCCCccccCCCCCCHHHHHHHHHHHHhcCCCeecccCCCCC
Confidence 4689999999999987552 2344322221 1333 4666999988887654 4554444566789
Q ss_pred cchhchHHHHHHHhhccCCCcEEEEEEcCCC-----CHHHHHHHHHHHHhhhc----CCCeEEEEecCCcccCc--Cccc
Q psy5092 159 HSLEMQIPYIAKVMEDFKNEFTIVPVMVGSL-----STGREAEYGRIFAPYLA----DPRNLFVISSDFCHWGD--RFRF 227 (291)
Q Consensus 159 HSiEVqLPFLq~~~~~~~~~~~IVPI~vg~~-----~~~~~~~lg~~L~~~~~----~~~~liVaSsDLSH~g~--~~gy 227 (291)
|++-|+|.||..--.+ .++++|||.++.. +.+++.+||++|+++++ +++++||+|+|+||+.. ++|+
T Consensus 125 HG~~VPL~~l~p~ad~--~P~~VVPi~invvq~Plps~~r~~~LG~AL~~aie~~~~d~rVlIIgSGgLSH~L~~~~~g~ 202 (420)
T PRK13367 125 HGLFSPLSALLPHDDG--WPVQVVPLQVGVLQFPIPSARRCYKLGQALRRAIESYPEDLKVAIVATGGLSHQVHGERCGF 202 (420)
T ss_pred cchhhhHHHhCCcccc--CCCceeeeeeceeecCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCccccCCCCCCCCC
Confidence 9999999997432101 3578999887653 79999999999999985 46899999999999964 3565
Q ss_pred ccCCcchHHHHHHHHhcChhchhhhhhhhhc
Q psy5092 228 TYYDSAYGEIHQSIEALDRKSPSSSINRVYS 258 (291)
Q Consensus 228 ~p~~~~D~~iie~I~~lD~~~l~~~~~~~~~ 258 (291)
.+ .+.|+++++.+++ |.+.+..+...++-
T Consensus 203 ~n-~~wD~~Fld~L~~-d~e~L~~~~~~e~~ 231 (420)
T PRK13367 203 NN-PEWDAQFLDLLVN-DPERLTEMTLAEYA 231 (420)
T ss_pred CC-HHHHHHHHHHHHh-CHHHHHcCCHHHHH
Confidence 54 4579999999997 99999998865543
No 33
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=99.53 E-value=1.1e-13 Score=127.55 Aligned_cols=172 Identities=12% Similarity=0.092 Sum_probs=119.4
Q ss_pred EEccCCcccc--cHHHHHHHHHhhCC--CCCCEEEEECCCCCCCCCceeecCCC----c-cccCC------CCCCCcHHH
Q psy5092 73 IISPHAGYRY--CGECAAFAYRQISP--ASVQRIFILGPSHYYQLGGCALSGAK----K-YSTPL------YDLKIDSQI 137 (291)
Q Consensus 73 iIvPHAGy~y--SG~~Aa~ay~~l~~--~~p~~VVILGP~H~~~~~g~al~~~~----~-~~TPL------G~v~vD~el 137 (291)
+.+||-+-.. .+.-...+++.+.+ .+||+|||++|+|......+.+.... + +.-|= =+.+.|.++
T Consensus 3 ~fi~HG~p~~~~~~~~~~~~l~~~~~~l~~p~~IiviSaHw~~~~~~i~~~~~~~~~~df~gfp~~~y~~~y~~~g~~eL 82 (253)
T cd07363 3 LFISHGSPMLALEDNPATAFLRELGKELPKPKAILVISAHWETRGPTVTASARPETIYDFYGFPPELYEIQYPAPGSPEL 82 (253)
T ss_pred EEeCCCCcccccCCChHHHHHHHHHHhcCCCCEEEEEcCCcccCCCeEEecCCCCceeCCCCCCHHHeeccCCCCCCHHH
Confidence 4455643222 22223366766643 38999999999776654444443221 1 22221 146889999
Q ss_pred HHHHHhcC---CcccccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcCCC-CHHHHHHHHHHHHhhhcCCCeEEE
Q psy5092 138 YSELEATN---KFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSL-STGREAEYGRIFAPYLADPRNLFV 213 (291)
Q Consensus 138 ~~~L~~~~---~~~~~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg~~-~~~~~~~lg~~L~~~~~~~~~liV 213 (291)
+++|.+.. ++..........||++-|+|.|+.. + .+++||||.+... +.+++.++|++|+++. +++++||
T Consensus 83 a~~i~~~l~~~gi~~~~~~~~~lDHG~~vPL~~~~p---~--~~iPvV~isi~~~~~~~~~~~lG~aL~~l~-~~~v~ii 156 (253)
T cd07363 83 AERVAELLKAAGIPARLDPERGLDHGAWVPLKLMYP---D--ADIPVVQLSLPASLDPAEHYALGRALAPLR-DEGVLII 156 (253)
T ss_pred HHHHHHHHHhcCCCccccCCcCCcccHHHHHHHHcC---C--CCCcEEEEEecCCCCHHHHHHHHHHHHhhh-hCCEEEE
Confidence 98887654 3433222346689999999998653 2 5799999999755 8999999999999965 5699999
Q ss_pred EecCCcccCcCc------ccccCC-cchHHHHHHHHhcChhchh
Q psy5092 214 ISSDFCHWGDRF------RFTYYD-SAYGEIHQSIEALDRKSPS 250 (291)
Q Consensus 214 aSsDLSH~g~~~------gy~p~~-~~D~~iie~I~~lD~~~l~ 250 (291)
+|+|+||..... ++.|.. ++|+.++++|++.|.+.+.
T Consensus 157 ~SG~lsH~l~~~~~~~~~~~~~~~~~Fd~~i~~~l~~~d~~~l~ 200 (253)
T cd07363 157 GSGSSVHNLRALRWGGPAPPPPWALEFDDWLKDALTAGDLDALL 200 (253)
T ss_pred ecCcceechhhhccccCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999997642 444443 3699999999999998854
No 34
>PRK13373 putative dioxygenase; Provisional
Probab=99.44 E-value=8.5e-13 Score=125.70 Aligned_cols=158 Identities=13% Similarity=0.100 Sum_probs=117.3
Q ss_pred CCCCCEEEEECCCCCCCCC-----ceeecCC----Cccc--------cCCCCCCCcHHHHHHHHhcC---CcccccCCCC
Q psy5092 96 PASVQRIFILGPSHYYQLG-----GCALSGA----KKYS--------TPLYDLKIDSQIYSELEATN---KFETISMDVD 155 (291)
Q Consensus 96 ~~~p~~VVILGP~H~~~~~-----g~al~~~----~~~~--------TPLG~v~vD~el~~~L~~~~---~~~~~d~~~h 155 (291)
..+||.|||+|++|...+. .+++-.. +.|. |+.|.++++.++++.|.+.. +|+..--..-
T Consensus 44 e~kPDVvVv~~nDH~~~Ff~d~mP~F~IG~a~~~~g~~~~~g~~~~~~~~~~~~g~~elA~~l~~~l~~~gfDva~s~~m 123 (344)
T PRK13373 44 AARPDVIIAFLDDHFENHFRSLMPTVGIGVADSHPGPATQWLEALRLTRQERFGGAPEIAERLLRSLVADGYDVARMGEI 123 (344)
T ss_pred HhCCCEEEEEccchhhhhccccCCceEEEecccccCCccccccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeeece
Confidence 3689999999999987552 1344222 3333 67788999999999998755 4555444456
Q ss_pred CCCcchhchHHHHHHHhhccCCCcEEEEEEcCC-----CCHHHHHHHHHHHHhhhc----CCCeEEEEecCCcccCcC--
Q psy5092 156 EEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGS-----LSTGREAEYGRIFAPYLA----DPRNLFVISSDFCHWGDR-- 224 (291)
Q Consensus 156 ~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg~-----~~~~~~~~lg~~L~~~~~----~~~~liVaSsDLSH~g~~-- 224 (291)
..+|++-++|-|| +++ ...+||||.++. .+.+++.+||++|+++++ ++|++||+|+.|||+-+-
T Consensus 124 ~vDHg~~vPl~~l---~~~--~~~pvVPV~vN~~~~P~p~~~R~~~lG~ai~~ai~~~~~d~rV~~~~sGgLSH~p~~~~ 198 (344)
T PRK13373 124 EYGNNLMVPWKLM---APR--SAPAIIPVFTNVFSPPVMPYRRAYAFGAALRNAAEALDADLRVAFMATGGMSHWPPFWN 198 (344)
T ss_pred eCCcceeeeHHHh---CCC--CCCCeEEEEEecccCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCcccCCCcccc
Confidence 7899998888775 332 456899999986 568899999999999987 479999999999997321
Q ss_pred ------------------cccc-------------------------------c-C-CcchHHHHHHHHhcChhchhhhh
Q psy5092 225 ------------------FRFT-------------------------------Y-Y-DSAYGEIHQSIEALDRKSPSSSI 253 (291)
Q Consensus 225 ------------------~gy~-------------------------------p-~-~~~D~~iie~I~~lD~~~l~~~~ 253 (291)
-|+. | - +..|+.+++.+.+.|.+.+..+.
T Consensus 199 ~~~p~~~~~l~~~~~~q~~G~~~~~r~~~~~r~~~~~~i~~~~r~~~~~~~~~~~iN~ewD~~fLd~l~~gD~e~L~~~t 278 (344)
T PRK13373 199 DSSPEADAFLARMKAFQTHGKSVLEKDPHLLRDLAAYEIEMAERNQWPLNSPHPLVNEAWDRQMLDALARGDVEFLCGLQ 278 (344)
T ss_pred cCchhhhhhhhccccccccCCCchhhhhhhhhhhhhhhhhHHHHhhccccccccccCHHHHHHHHHHHHcCCHHHHHcCC
Confidence 1110 1 0 12599999999999999999988
Q ss_pred hhhhc
Q psy5092 254 NRVYS 258 (291)
Q Consensus 254 ~~~~~ 258 (291)
+++..
T Consensus 279 ~~e~~ 283 (344)
T PRK13373 279 YEDVK 283 (344)
T ss_pred HHHHH
Confidence 77654
No 35
>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional
Probab=99.32 E-value=2e-11 Score=120.01 Aligned_cols=163 Identities=13% Similarity=0.146 Sum_probs=113.8
Q ss_pred CCCCCEEEEECCCCCCCCC-----ceeecCCCccccC----CCCCCC-----cHHHHHHHHhcC---CcccccCCCCCCC
Q psy5092 96 PASVQRIFILGPSHYYQLG-----GCALSGAKKYSTP----LYDLKI-----DSQIYSELEATN---KFETISMDVDEEE 158 (291)
Q Consensus 96 ~~~p~~VVILGP~H~~~~~-----g~al~~~~~~~TP----LG~v~v-----D~el~~~L~~~~---~~~~~d~~~h~~E 158 (291)
..+||.|||+|++|...+. .+++-....+. | .|..++ +.+++++|.+.. +++......-..|
T Consensus 193 ~~~PDVvVi~~nDH~~~Ff~d~mP~FaIG~~~~~~-p~d~g~G~~~v~~~pG~peLA~~I~~~L~~~GfD~a~~~erglD 271 (444)
T PRK13372 193 EHLPDVIILVYNDHATAFDLEIIPTFAIGTAAEFP-PADEGWGPRPVPDVIGHPELAAHIAQSVIQDDFDLTIVNEMDVD 271 (444)
T ss_pred HhCCCEEEEEccchhhhcCcccCCCeEEEEccccC-CCcccCCCCCCCCCCCCHHHHHHHHHHHHhcCCChhhccCCCCC
Confidence 4689999999999987552 23443222221 1 343444 999998887654 4554444566789
Q ss_pred cchhchHHHHHHHhhccCCCcEEEEEEcCCC-----CHHHHHHHHHHHHhhhc----C-CCeEEEEecCCcccCcC--cc
Q psy5092 159 HSLEMQIPYIAKVMEDFKNEFTIVPVMVGSL-----STGREAEYGRIFAPYLA----D-PRNLFVISSDFCHWGDR--FR 226 (291)
Q Consensus 159 HSiEVqLPFLq~~~~~~~~~~~IVPI~vg~~-----~~~~~~~lg~~L~~~~~----~-~~~liVaSsDLSH~g~~--~g 226 (291)
|++-|+|-++.---. ..+++||||.++.. +.+++.+||++|+++.+ | ++++||+|+.+||+... .+
T Consensus 272 HG~~vPL~lm~P~ad--~~~IPVVPvsvN~~~~Plps~~R~~~LG~AL~~lres~~~D~erVlIIGSGGLSHnL~~~~~g 349 (444)
T PRK13372 272 HGLTVPLSLMCGDPE--AWPCPVIPFAVNVVQYPVPSGRRCYELGQAIRRAIDKWDADPLNVQIWGTGGMSHQLQGPRAG 349 (444)
T ss_pred chhhhhHHHhCCccc--CCCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHhhcccccCCEEEEecCcccCCCCCCCCc
Confidence 999999877432110 02589999999764 89999999999999987 2 78999999999999542 22
Q ss_pred cccCCcchHHHHHHHHhcChhchhhhhhhhhccccccCC
Q psy5092 227 FTYYDSAYGEIHQSIEALDRKSPSSSINRVYSILISRGP 265 (291)
Q Consensus 227 y~p~~~~D~~iie~I~~lD~~~l~~~~~~~~~~~~~~~~ 265 (291)
.....+|..+++.+++ |.+.|..+.+..+ .--+|+
T Consensus 350 -~in~eFD~~~ld~L~~-D~e~L~~~~~~~~--~~~aG~ 384 (444)
T PRK13372 350 -LINEEFDNAFLDHLIA-DPEAAAEIPHIDY--VDEAGS 384 (444)
T ss_pred -cchHHHHHHHHHHHHh-CHHHHHcCcccHH--HHHcCC
Confidence 1122469999999998 9997777764433 234555
No 36
>COG3885 Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=4.1e-11 Score=108.20 Aligned_cols=184 Identities=15% Similarity=0.118 Sum_probs=132.4
Q ss_pred EEEccCCcccccHH-----HHHHHHHhhCC-CC-CCEEEEECCCCCCCCCceeecCCC-----ccccCC----CCCCCcH
Q psy5092 72 AIISPHAGYRYCGE-----CAAFAYRQISP-AS-VQRIFILGPSHYYQLGGCALSGAK-----KYSTPL----YDLKIDS 135 (291)
Q Consensus 72 aiIvPHAGy~ySG~-----~Aa~ay~~l~~-~~-p~~VVILGP~H~~~~~g~al~~~~-----~~~TPL----G~v~vD~ 135 (291)
-.|.||-+=.--++ -...|++.+.. .+ ++|+||++|+.....+.+++.-.+ .++|-= ++..+|+
T Consensus 5 iyv~PHgdEii~~~~~e~~~l~kA~k~i~~~~~~seT~VvIsPHgi~ldd~iaviys~~l~g~~~~~k~~~i~~ey~~dr 84 (261)
T COG3885 5 IYVIPHGDEIIDPEDEESRKLNKAIKEIASDDKGSETYVVISPHGIRLDDYIAVIYSEYLSGLPYRTKHHPIRKEYKNDR 84 (261)
T ss_pred EEeccCCccccCCchhHHHHHHHHHHHHHcccCCCceEEEEcCCceeeechhhHHhHHhhcccccccccCcchhhhhccH
Confidence 34667754443332 23344555432 23 899999999555555555553211 222222 2378999
Q ss_pred HHHHHHHhcCCcc--c----cc-----CCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcCCCCHHHHHHHHHHHHhh
Q psy5092 136 QIYSELEATNKFE--T----IS-----MDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSLSTGREAEYGRIFAPY 204 (291)
Q Consensus 136 el~~~L~~~~~~~--~----~d-----~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg~~~~~~~~~lg~~L~~~ 204 (291)
++++.+.+..... . .+ .....++|+--+||.||+. -+||-+.....+.+...++|..|.++
T Consensus 85 eLa~~I~~~a~g~~p~v~it~~~lkg~~s~~~Ld~G~~IPL~Flk~--------rrIV~lt~arl~~~~l~~Fg~~l~~~ 156 (261)
T COG3885 85 ELADKIYEEAKGQFPLVCITFSILKGNYSRCPLDWGSLIPLYFLKR--------RRIVLLTPARLSREILVKFGDNLGKA 156 (261)
T ss_pred HHHHHHHHHhccCCceEEEechhhcCcCCccccccccccchhhccc--------eeEEEechhhccHHHHHHHHHHHHHH
Confidence 9999998755211 1 11 2236789999999999743 46999999889999999999999999
Q ss_pred hc--CCCeEEEEecCCcccCc---CcccccCCc-chHHHHHHHHhcChhchhhhhhhhhcccccc
Q psy5092 205 LA--DPRNLFVISSDFCHWGD---RFRFTYYDS-AYGEIHQSIEALDRKSPSSSINRVYSILISR 263 (291)
Q Consensus 205 ~~--~~~~liVaSsDLSH~g~---~~gy~p~~~-~D~~iie~I~~lD~~~l~~~~~~~~~~~~~~ 263 (291)
++ .+++.+|+|.|.+|..+ +|||.++.. .|+.+++.|.+.|.+++.+++.+..+--+-|
T Consensus 157 le~~~~ki~lIiSaD~aHth~edGPYGYs~~se~yDk~iv~~lks~n~e~l~~iD~~~I~~Akpd 221 (261)
T COG3885 157 LEEYERKISLIISADHAHTHDEDGPYGYSEESEEYDKIIVDSLKSGNFEALLSIDDEVIAEAKPD 221 (261)
T ss_pred HHHhhcceEEEEecccccccCCCCCCCCChhHHHHHHHHHHHhcccCHHHHHhccHHHHHhcCCc
Confidence 87 58999999999999987 489987765 5999999999999999999998887665555
No 37
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=98.71 E-value=1.7e-07 Score=86.88 Aligned_cols=169 Identities=11% Similarity=0.091 Sum_probs=117.7
Q ss_pred HHHHHHhhCC----CCCCEEEEECCCCCCCCCceeecCCCcccc---CCCC----------CCCcHHHHHHHHhcCC---
Q psy5092 87 AAFAYRQISP----ASVQRIFILGPSHYYQLGGCALSGAKKYST---PLYD----------LKIDSQIYSELEATNK--- 146 (291)
Q Consensus 87 Aa~ay~~l~~----~~p~~VVILGP~H~~~~~g~al~~~~~~~T---PLG~----------v~vD~el~~~L~~~~~--- 146 (291)
+-.+++.|.+ .+||+||+++| |+..-.+..++.....+| =.|- -+.+++++++|++...
T Consensus 28 ~~~~l~~lG~~~~e~rp~tIiV~Sa-Hw~t~~~~~v~~~e~~~~i~DfygFP~~ly~~~Y~a~G~peLa~~i~~~l~~~~ 106 (268)
T COG3384 28 ATRGLRELGRELPELRPDTIIVFSA-HWETRGAYHVTASEHPETIHDFYGFPDELYDVKYPAPGSPELAQRIVELLAKLG 106 (268)
T ss_pred HHHHHHHHHHhhhhcCCCEEEEEec-eEEecCceeEEcccCcceeeccCCCCHHHHhccCCCCCCHHHHHHHHHHhcccC
Confidence 3444555532 26999999998 665444455554444433 2222 6678888888877553
Q ss_pred cccccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcCCC-CHHHHHHHHHHHHhhhcCCCeEEEEecCCcccCcCc
Q psy5092 147 FETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSL-STGREAEYGRIFAPYLADPRNLFVISSDFCHWGDRF 225 (291)
Q Consensus 147 ~~~~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg~~-~~~~~~~lg~~L~~~~~~~~~liVaSsDLSH~g~~~ 225 (291)
+.. +...-..||+.=++| .+.|++ .++|||.|.+... +++..+++|++|+++.+ +.++||+|+.++|....+
T Consensus 107 v~a-~~~~~gLDHGtwvpL---~~M~Pd--adipVV~iSi~~~~~~~~h~~lG~al~~lre-e~vlilaSGs~~H~l~~~ 179 (268)
T COG3384 107 VPA-DAPSWGLDHGTWVPL---RYMFPD--ADIPVVQISIDCTLSPADHYELGRALRKLRE-EGVLILASGSLVHNLRLL 179 (268)
T ss_pred ccc-cCCccCCCccceeee---hhhCCc--cCCcEEEEecCCCCCHHHHHHHHHHHHHHHh-CCEEEEecCcceeehhhh
Confidence 221 223567899988875 446755 7899999999765 78899999999999865 469999999999998765
Q ss_pred ccccC---C---cchHHHHHHHH--hcChhchhhhhhhhhcccccc
Q psy5092 226 RFTYY---D---SAYGEIHQSIE--ALDRKSPSSSINRVYSILISR 263 (291)
Q Consensus 226 gy~p~---~---~~D~~iie~I~--~lD~~~l~~~~~~~~~~~~~~ 263 (291)
.+... . ++|..+.+.|. ..|.+.+....+.+-+-.+.-
T Consensus 180 ~~~~~~~~~~a~~F~~~~~~~v~~~~~d~~~~~~~~~~~p~~~~~~ 225 (268)
T COG3384 180 KWAGDGPYPWAREFDEWMKKNVVLWGGDFAPLCNYLPLYPDALIAE 225 (268)
T ss_pred hhcCCCCChhHHHHHHHHHHHHHHhccchHHHhHhhhhchHhhhCC
Confidence 44322 1 35888888886 347788888888877766543
No 38
>PRK10628 LigB family dioxygenase; Provisional
Probab=98.29 E-value=2.5e-05 Score=72.27 Aligned_cols=107 Identities=14% Similarity=0.120 Sum_probs=76.3
Q ss_pred CCCcHHHHHHHHhcC---CcccccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcC-CCCHHHHHHHHHHHHhhhc
Q psy5092 131 LKIDSQIYSELEATN---KFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVG-SLSTGREAEYGRIFAPYLA 206 (291)
Q Consensus 131 v~vD~el~~~L~~~~---~~~~~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg-~~~~~~~~~lg~~L~~~~~ 206 (291)
.+-+.++++++.+.. +. ..++.....||++=|+|-+ .+++ .+++||.|.+. ..+++...++|++|+++ +
T Consensus 66 a~G~p~LA~~i~~ll~~~~~-~~~~~~rGlDHG~WvpL~~---m~P~--adIPVvqlSl~~~~~~~~h~~lG~aL~~L-R 138 (246)
T PRK10628 66 APGSPALAQRLVELLAPVPV-TLDKEAWGFDHGSWGVLIK---MYPD--ADIPMVQLSIDSTKPAAWHFEMGRKLAAL-R 138 (246)
T ss_pred CCCCHHHHHHHHHHhhhcCc-ccCCcccCcccchhhhhhh---hCCC--CCCCeEEeecCCCCCHHHHHHHHHHHHhh-c
Confidence 456666666665533 33 2333346789999888654 5654 68999999994 56888899999999986 5
Q ss_pred CCCeEEEEecCCcccCcCcccc----cC---CcchHHHHHHHHhc
Q psy5092 207 DPRNLFVISSDFCHWGDRFRFT----YY---DSAYGEIHQSIEAL 244 (291)
Q Consensus 207 ~~~~liVaSsDLSH~g~~~gy~----p~---~~~D~~iie~I~~l 244 (291)
+++++||+|+..+|-+..+.+. ++ ..+|..+.++|.+.
T Consensus 139 ~~gvLIigSG~~~HNL~~~~~~~~~~~~~wa~~F~~wl~~~l~~~ 183 (246)
T PRK10628 139 DEGIMLVASGNVVHNLRTVKWHGDSSPYPWAESFNQFVKANLTWQ 183 (246)
T ss_pred cCCEEEEecCccccchhhhcccCCCCCchHHHHHHHHHHHHHhcC
Confidence 6789999999999987654321 11 12588888888853
No 39
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=62.96 E-value=17 Score=32.72 Aligned_cols=37 Identities=24% Similarity=0.567 Sum_probs=32.8
Q ss_pred CcccccHHHHHHHHHhhCC---CCCCEEEEECCCCCCCCC
Q psy5092 78 AGYRYCGECAAFAYRQISP---ASVQRIFILGPSHYYQLG 114 (291)
Q Consensus 78 AGy~ySG~~Aa~ay~~l~~---~~p~~VVILGP~H~~~~~ 114 (291)
+||.|..-+.-.+|..|.+ .+...|++|+|++...++
T Consensus 73 iGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~~dFe 112 (192)
T PF06057_consen 73 IGYSFGADVLPFIYNRLPAALRARVAQVVLLSPSTTADFE 112 (192)
T ss_pred EeecCCchhHHHHHhhCCHHHHhheeEEEEeccCCcceEE
Confidence 7999999999999999964 578889999999988776
No 40
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=34.57 E-value=20 Score=34.60 Aligned_cols=55 Identities=24% Similarity=0.345 Sum_probs=35.2
Q ss_pred hHHHHHHHhhccCCCcEEEEEEcCCCCHHHHHHHHHHHHhhhcCCCe-------EEEEecCCcccCcC
Q psy5092 164 QIPYIAKVMEDFKNEFTIVPVMVGSLSTGREAEYGRIFAPYLADPRN-------LFVISSDFCHWGDR 224 (291)
Q Consensus 164 qLPFLq~~~~~~~~~~~IVPI~vg~~~~~~~~~lg~~L~~~~~~~~~-------liVaSsDLSH~g~~ 224 (291)
-||||..+. ++++| ||++-+.+.++..++|+-+.- +++.++ -+..|.||.-|+++
T Consensus 167 ilpylERL~----~e~~I-PIlYVSHS~~Ev~RLAd~vV~-le~GkV~A~g~~e~v~~~~~~~p~~~~ 228 (352)
T COG4148 167 ILPYLERLR----DEINI-PILYVSHSLDEVLRLADRVVV-LENGKVKASGPLEEVWGSPDFPPWLPR 228 (352)
T ss_pred HHHHHHHHH----HhcCC-CEEEEecCHHHHHhhhheEEE-ecCCeEEecCcHHHHhcCcccCcccCc
Confidence 589999998 56665 888878888876666665432 121111 25666677776553
No 41
>TIGR02221 cas_TM1812 CRISPR-associated protein, TM1812 family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1812 of Thermotoga maritima, is found also in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, a large plasmid of Synechocystis sp. PCC 6803, and Fibrobacter succinogenes S85.
Probab=32.13 E-value=1.8e+02 Score=26.64 Aligned_cols=97 Identities=10% Similarity=0.136 Sum_probs=48.8
Q ss_pred CCCEEEEECCCCCCCCCceeecCCCcccc--CCCCCCCcHHHHHHHHhcCCcccccCCCCCCCcchhchHHHHHHHhhcc
Q psy5092 98 SVQRIFILGPSHYYQLGGCALSGAKKYST--PLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPYIAKVMEDF 175 (291)
Q Consensus 98 ~p~~VVILGP~H~~~~~g~al~~~~~~~T--PLG~v~vD~el~~~L~~~~~~~~~d~~~h~~EHSiEVqLPFLq~~~~~~ 175 (291)
+||+|+|+|+.- ..|+. +-| .|.+..-.|.+... .......+--|.|.-.++. ++
T Consensus 45 ~pdkvii~gT~~------------S~W~~l~~~~---~~~~~~l~l~~~~~-----~~~~~~~~l~~~~~~l~~~-~~-- 101 (218)
T TIGR02221 45 RPDKVIVVGTAG------------SMWDKLYEVG---FDEDYWVLLGKKVG-----MSKVDNALLSELQLKLIEK-LG-- 101 (218)
T ss_pred CCCEEEEEecCc------------chhhHhhhcc---cchHHHHHHHHhhh-----hccchhHHHHHHHHhhhhh-cC--
Confidence 599999999862 12222 112 55555544443221 1111122333445545555 32
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHHHHHhhhcCCCeEEEEecCCccc
Q psy5092 176 KNEFTIVPVMVGSLSTGREAEYGRIFAPYLADPRNLFVISSDFCHW 221 (291)
Q Consensus 176 ~~~~~IVPI~vg~~~~~~~~~lg~~L~~~~~~~~~liVaSsDLSH~ 221 (291)
.++..+.|=.|....+...++-+.|.+.+++.+.++ =|+||=
T Consensus 102 -~~i~~~~IP~g~~~~~e~w~iF~~l~~~l~~~d~ii---~DITHg 143 (218)
T TIGR02221 102 -DKVLKRLIPDAVSGSKEQWDLFMSLTNEVDHGDEIY---LDITHG 143 (218)
T ss_pred -CccEEEeCCCCCCchHHHHHHHHHHHhcCCCCCEEE---EEccCc
Confidence 334444443333333255666677777776555443 499993
No 42
>KOG2616|consensus
Probab=30.94 E-value=43 Score=31.12 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=41.2
Q ss_pred EEEccCCcccccHHHHHHHHHhhCCCCCCE-EEEECCCCCCCCCceeecCCCccccCCCCCCCc----HHHHHHHHhc
Q psy5092 72 AIISPHAGYRYCGECAAFAYRQISPASVQR-IFILGPSHYYQLGGCALSGAKKYSTPLYDLKID----SQIYSELEAT 144 (291)
Q Consensus 72 aiIvPHAGy~ySG~~Aa~ay~~l~~~~p~~-VVILGP~H~~~~~g~al~~~~~~~TPLG~v~vD----~el~~~L~~~ 144 (291)
-|+.||-. -.-.++|+.+++.+|++ +++++|.|..-+... +. .+..||+|+.+.. ++..+.|.++
T Consensus 169 YiLdPHTA-----Vav~~~~r~idkt~ps~~~i~lstAh~aKFa~A-V~--~Al~~~~s~yn~~~~~h~~~l~~l~~~ 238 (266)
T KOG2616|consen 169 YILDPHTA-----VAVNYHYRQIDKTQPSIPYICLSTAHPAKFAEA-VN--AALSTPESPYNFVALVHPEELCTLMRR 238 (266)
T ss_pred eeecCchH-----HHHHHHHHHHhccCCCCceEEecccChhhhhHH-HH--HHhcCCCCCccccchhcHHHHHHHHhh
Confidence 78999942 22235688888777744 799999999877652 22 3456677764443 4444555443
No 43
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=28.13 E-value=1.1e+02 Score=27.33 Aligned_cols=43 Identities=21% Similarity=0.424 Sum_probs=32.6
Q ss_pred cEEE-EEEcCCCCHHH--HHHHHHHHHhhhcC--CCeEEEEecCCccc
Q psy5092 179 FTIV-PVMVGSLSTGR--EAEYGRIFAPYLAD--PRNLFVISSDFCHW 221 (291)
Q Consensus 179 ~~IV-PI~vg~~~~~~--~~~lg~~L~~~~~~--~~~liVaSsDLSH~ 221 (291)
|.|+ ||++|..|.-+ +.++|+.+++.+.+ +++-+-.+++|+..
T Consensus 7 ~~i~g~v~~Gpsssht~laerlG~l~~ql~~~~~~~I~i~~~Gsla~t 54 (208)
T TIGR00719 7 FDIIGPIMIGPSSSHTAGAAKIANVARSIFGNEPEQIEFQFHGSFAET 54 (208)
T ss_pred hhEecCceECCChhHHHHHHHHHHHHHHHhcCCCcEEEEEEEeeeccc
Confidence 5688 99998766443 57788888887763 46778889999973
No 44
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=27.93 E-value=19 Score=29.74 Aligned_cols=12 Identities=50% Similarity=0.924 Sum_probs=7.9
Q ss_pred cchhhccccccC
Q psy5092 4 MVGIWMGNCFSQ 15 (291)
Q Consensus 4 ~~~~~~~~~~~~ 15 (291)
||-+|+|||-|+
T Consensus 1 ~VsiWiG~f~s~ 12 (122)
T PF14112_consen 1 KVSIWIGNFKSE 12 (122)
T ss_pred CeEEEEecCCCH
Confidence 567788876543
No 45
>KOG4126|consensus
Probab=27.03 E-value=88 Score=32.27 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhhc---CCCeEEEEecCCcccCcCcccccCC
Q psy5092 193 REAEYGRIFAPYLA---DPRNLFVISSDFCHWGDRFRFTYYD 231 (291)
Q Consensus 193 ~~~~lg~~L~~~~~---~~~~liVaSsDLSH~g~~~gy~p~~ 231 (291)
+..++.++++.+.+ .+++++|+.+|=||-++-.||.+.+
T Consensus 369 Et~ef~~Aiq~a~~~t~~~dTLivvTaDHsh~~s~~GYp~Rg 410 (529)
T KOG4126|consen 369 ETLEFDKAIQRALELTSEEDTLIVVTADHSHTFSINGYPLRG 410 (529)
T ss_pred HHHHHHHHHHHHHHhcCccCCEEEEecccccceeecCCCcCC
Confidence 34667777776654 5789999999999998877765444
No 46
>cd07370 HPCD The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. HPCD is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.
Probab=25.92 E-value=3.5e+02 Score=25.15 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=33.4
Q ss_pred cccCCCCCCCcHHHHHHHHhcCCccc--ccCCCCCCCcchhchHHHHHH
Q psy5092 124 YSTPLYDLKIDSQIYSELEATNKFET--ISMDVDEEEHSLEMQIPYIAK 170 (291)
Q Consensus 124 ~~TPLG~v~vD~el~~~L~~~~~~~~--~d~~~h~~EHSiEVqLPFLq~ 170 (291)
+.-| |+...-.++++.+.+.. +.. ..+..-..||+.-|+|-|+..
T Consensus 88 ~~~~-gd~ela~~i~~~~~~~g-~~~~~~~~~~~~lDhg~~vPL~~l~p 134 (280)
T cd07370 88 YDYA-GDPELAHLIAEEATEHG-VKTLAHEDPSLPLEYGTLVPMRFMNE 134 (280)
T ss_pred CCCC-CCHHHHHHHHHHHHHCC-CCeeeecCCCCCCCeeHhhHHHHhCC
Confidence 4444 88999999998887653 432 244556799999999999975
No 47
>PF05651 Diacid_rec: Putative sugar diacid recognition; InterPro: IPR008599 This region is found in several proteins characterised as carbohydrate diacid regulators (e.g. P36047 from SWISSPROT). An HTH DNA-binding motif is found at the C terminus of these proteins suggesting that this region includes the sugar recognition region.
Probab=20.93 E-value=2.9e+02 Score=23.13 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHhhhc------CCCeEEEEecCCcccCc
Q psy5092 190 STGREAEYGRIFAPYLA------DPRNLFVISSDFCHWGD 223 (291)
Q Consensus 190 ~~~~~~~lg~~L~~~~~------~~~~liVaSsDLSH~g~ 223 (291)
+.+.+.++.+.+.+.+. |.+-.+|||||-+..|.
T Consensus 2 ~~~~Aq~Iv~~~~~~i~~~inimd~~G~IIAStd~~RIG~ 41 (135)
T PF05651_consen 2 SKELAQKIVDEIMEIIGYNINIMDENGIIIASTDPERIGT 41 (135)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCcEEEecCChhhcCc
Confidence 34556666666666654 57778999999998754
Done!