Query psy5092
Match_columns 291
No_of_seqs 159 out of 736
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 17:07:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bcz_A Protein MEMO1; alpha/be 100.0 2.5E-64 8.5E-69 470.5 21.0 242 34-281 2-254 (293)
2 3vsj_A 2-amino-5-chlorophenol 99.9 3.3E-23 1.1E-27 190.3 14.0 202 71-281 5-246 (271)
3 1b4u_B LIGA, LIGB, protocatech 99.9 2.7E-22 9.3E-27 187.5 15.4 189 71-266 6-239 (302)
4 3vsj_B 2-amino-5-chlorophenol 99.8 5.2E-21 1.8E-25 179.6 10.7 202 71-281 7-266 (312)
5 2pw6_A Uncharacterized protein 99.4 4.8E-13 1.7E-17 123.3 9.7 186 71-267 16-232 (271)
6 3icv_A Lipase B, CALB; circula 21.3 1.6E+02 0.0055 26.8 6.2 57 49-112 114-172 (316)
7 1o5k_A DHDPS, dihydrodipicolin 17.5 3.7E+02 0.013 23.9 7.7 100 108-216 9-116 (306)
8 1t57_A Conserved protein MTH16 17.5 2.7E+02 0.0091 24.2 6.3 55 69-145 51-105 (206)
9 3m7v_A Phosphopentomutase; str 16.6 87 0.003 27.7 3.2 22 195-218 321-342 (413)
10 3e2d_A Alkaline phosphatase; c 15.8 2.1E+02 0.0073 28.0 5.9 34 194-227 288-325 (502)
No 1
>3bcz_A Protein MEMO1; alpha/beta structure, peptide binding protein; 2.10A {Homo sapiens} PDB: 3bd0_A
Probab=100.00 E-value=2.5e-64 Score=470.47 Aligned_cols=242 Identities=48% Similarity=0.838 Sum_probs=217.3
Q ss_pred CccCcCccCcccCCCHHHHHHHHHHHhhhccCCCCCceEEEccCCcccccHHHHHHHHHhhCCCCCCEEEEECCCCCCCC
Q psy5092 34 CYKLSNHLRFKCSKQTKELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPSHYYQL 113 (291)
Q Consensus 34 ~iR~~a~AG~fYP~~~~eL~~~l~~~l~~~~~~~~~~~aiIvPHAGy~ySG~~Aa~ay~~l~~~~p~~VVILGP~H~~~~ 113 (291)
.+|+|+|||+|||+|+++|++||+.||..++..+.+++|+|+|||||+|||++||+||+.|+..+|||||||||||+..+
T Consensus 2 ~~R~~~~AG~~Yp~~~~~L~~~l~~~l~~~~~~~~~~~~iI~PHAGy~ysG~~aa~ay~~l~~~~p~~VvilGP~H~~~~ 81 (293)
T 3bcz_A 2 VCREASHAGSWYTASGPQLNAQLEGWLSQVQSTKRPARAIIAPHAGYTYCGSCAAHAYKQVDPSITRRIFILGPSHHVPL 81 (293)
T ss_dssp CEECCTTBTTTBCSCHHHHHHHHHHHHTTSCCCSCSCSEEEECCSCHHHHHHHHHHHHTTCCTTTCCEEEEEEECSSSCC
T ss_pred CccCCccccCCCCCCHHHHHHHHHHHHhhCCCCCCCceEEEECCCCccccHHHHHHHHHHhccCCCCEEEEECCCCCCCC
Confidence 57999999999999999999999999977653233479999999999999999999999998778999999999999999
Q ss_pred CceeecCCCccccCCCCCCCcHHHHHHHHhcCCcccccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcCCCCHHH
Q psy5092 114 GGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSLSTGR 193 (291)
Q Consensus 114 ~g~al~~~~~~~TPLG~v~vD~el~~~L~~~~~~~~~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg~~~~~~ 193 (291)
.++++++.+.|+||||++++|++++++|.+...+..++...|..|||+||||||||+.+++..++++||||+||..+.++
T Consensus 82 ~~~a~~~~~~~~TPlG~l~vD~el~~~L~~~~~~~~~d~~~~~~EHSlEv~LPfL~~~~~~~~~~~~IVPI~vg~~~~~~ 161 (293)
T 3bcz_A 82 SRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESK 161 (293)
T ss_dssp SSEEECSCSEECCSSCCEEBCHHHHHHHHHTSCEEECCHHHHHHCCTTGGGHHHHHHHTGGGTTSCEEEEEEECCCCHHH
T ss_pred CceEEccCCceECCCccCCCCHHHHHHHHhcCCcccccccccchheEEEeeHHHHHHHhCCCCCCceEEEEEcCCCCHHH
Confidence 99999999999999999999999999999987777778889999999999999999998421137999999999999999
Q ss_pred HHHHHHHHHhhhcCCCeEEEEecCCcccCcCcccccCC-----------cchHHHHHHHHhcChhchhhhhhhhhccccc
Q psy5092 194 EAEYGRIFAPYLADPRNLFVISSDFCHWGDRFRFTYYD-----------SAYGEIHQSIEALDRKSPSSSINRVYSILIS 262 (291)
Q Consensus 194 ~~~lg~~L~~~~~~~~~liVaSsDLSH~g~~~gy~p~~-----------~~D~~iie~I~~lD~~~l~~~~~~~~~~~~~ 262 (291)
++++|++|++++++.+++||+||||||||+||||+|+. ..|+.++++|+++|+++|++.++++.+ -.
T Consensus 162 ~~~~g~~l~~~~~~~~~l~V~SsDlsH~g~~fgy~~~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~--t~ 239 (293)
T 3bcz_A 162 EQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHN--TI 239 (293)
T ss_dssp HHHHHHHHHHHHTCTTEEEEEECCCCEEBGGGTBCCCCGGGCSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHCC--CC
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCCccCCCCCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc--Cc
Confidence 99999999999988899999999999999999999873 269999999999999999998888665 35
Q ss_pred cCCCCCcchhhHHHHhhcC
Q psy5092 263 RGPSDEEGHGLSLMEILKP 281 (291)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~ 281 (291)
| |.+.+..+|..++.
T Consensus 240 C----G~~pi~~~l~a~~~ 254 (293)
T 3bcz_A 240 C----GRHPIGVLLNAITE 254 (293)
T ss_dssp T----THHHHHHHHHHHHH
T ss_pred C----cHHHHHHHHHHHHH
Confidence 7 66677777776653
No 2
>3vsj_A 2-amino-5-chlorophenol 1,6-dioxygenase alpha SUBU; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_A 3vsi_A* 3vsg_A*
Probab=99.90 E-value=3.3e-23 Score=190.25 Aligned_cols=202 Identities=11% Similarity=-0.016 Sum_probs=150.6
Q ss_pred eEEEccCCc--ccc----cHHHHHHHHHhhC----CCCCCEEEEECCCCCCCCCceee--------cCCCccccCCCCCC
Q psy5092 71 RAIISPHAG--YRY----CGECAAFAYRQIS----PASVQRIFILGPSHYYQLGGCAL--------SGAKKYSTPLYDLK 132 (291)
Q Consensus 71 ~aiIvPHAG--y~y----SG~~Aa~ay~~l~----~~~p~~VVILGP~H~~~~~g~al--------~~~~~~~TPLG~v~ 132 (291)
-++++||.- -.. --.-...+|+.+. ..+||+|||+||+|......+++ ...++|. +||+++
T Consensus 5 ~a~~~pH~P~~~l~pe~~~~~~~~~a~~~~~~~l~~~~Pd~ivvis~h~~~~~~~~~i~~~~~~~~~~~~~f~-~~g~~~ 83 (271)
T 3vsj_A 5 SAFLVPGTPLPQLKPEVPSWGQLAAATERAGKALAASRPDVVLVYSTQWLAVLDQQWLTRPRSEGVHVDENWY-EFGDLA 83 (271)
T ss_dssp EEEEECCCSHHHHCTTSHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEEESSSEEEECCSEEEEEECCTTTG-GGCCEE
T ss_pred EEEEcCCCCccCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCcccccCcEEEeccCCCcccccCCch-hhcccc
Confidence 478888875 100 1122334455543 35799999999988777666655 2356777 899865
Q ss_pred ----CcHHHHHHHHhcC---Cccc--ccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcC-CCCHHHHHHHHHHHH
Q psy5092 133 ----IDSQIYSELEATN---KFET--ISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVG-SLSTGREAEYGRIFA 202 (291)
Q Consensus 133 ----vD~el~~~L~~~~---~~~~--~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg-~~~~~~~~~lg~~L~ 202 (291)
.|.++++++.+.. ++.. .++..+..|||++|||+||+... ++++||||.++ ..+++++.++|++|+
T Consensus 84 y~~~gd~~la~~i~~~~~~~g~~~~~~~~~~~~lDHg~~vpl~~l~~~~----~~~pvv~i~~~~~~~~~~~~~lG~al~ 159 (271)
T 3vsj_A 84 YDIRADTALAEACVTSSPLHGVHARGVNYDGFPIDTGTITACTLMGIGT----DAFPLVVGSNNLYHSGEITEKLAALAV 159 (271)
T ss_dssp EEEEBCHHHHHHHHHHHHHTTCCEEEECCTTCCCCHHHHHHHHHHTCSS----SSSCEEEEEEETTCCHHHHHHHHHHHH
T ss_pred ccCcCCHHHHHHHHHHHHHCCCcEEeecCCCCCcchhHHHHHHHHhccC----CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999998887643 3443 24567899999999999999765 56999999999 899999999999999
Q ss_pred hhhc--CCCeEEEEecCCcccCcCcc-----cccCC----cchHHHHHHHHhcChhchhhhhhhhhccc-cccCCCCCcc
Q psy5092 203 PYLA--DPRNLFVISSDFCHWGDRFR-----FTYYD----SAYGEIHQSIEALDRKSPSSSINRVYSIL-ISRGPSDEEG 270 (291)
Q Consensus 203 ~~~~--~~~~liVaSsDLSH~g~~~g-----y~p~~----~~D~~iie~I~~lD~~~l~~~~~~~~~~~-~~~~~~~~~~ 270 (291)
++++ +++++||+|||+||+..+.. ..++. .+|+.++++|+++|.++|.++..++.... -.| |.+
T Consensus 160 ~~~~~~~~~vlii~SGdlsH~l~~~~~~~~~~~~~~~~a~~fD~~~~~~l~~~D~~~L~~~~~~~~~~a~g~~----G~~ 235 (271)
T 3vsj_A 160 DCAKDQNKRVAVVGVGGLSGSLFREEIDPREDRIANEEDDKWNRRVLKLIEAGDVSALREAMPVYAKEARVDM----GFK 235 (271)
T ss_dssp HHHHHTTCCEEEEEECCSCCCCCSSCCCGGGCCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTCGG----GGH
T ss_pred HHHHHcCCCEEEEEECccccCCcccCCCCCCCCCCCcchHHHHHHHHHHHHCCCHHHHHhcCHHHHHHhccCC----cHH
Confidence 9876 78999999999999984211 11222 36999999999999999999987655543 345 667
Q ss_pred hhhHHHHhhcC
Q psy5092 271 HGLSLMEILKP 281 (291)
Q Consensus 271 ~~~~~~~~~~~ 281 (291)
....++-.++.
T Consensus 236 ~~~~l~gal~~ 246 (271)
T 3vsj_A 236 HLHWILGALKG 246 (271)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHhcCC
Confidence 77777766655
No 3
>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: c.56.6.1 PDB: 1bou_B
Probab=99.88 E-value=2.7e-22 Score=187.53 Aligned_cols=189 Identities=13% Similarity=0.080 Sum_probs=141.2
Q ss_pred eEEEccCCcccccH-----------HHHHHHHHhhC----C--CCCCEEEEECCCCCCCCCc-----eeecCCCc---cc
Q psy5092 71 RAIISPHAGYRYCG-----------ECAAFAYRQIS----P--ASVQRIFILGPSHYYQLGG-----CALSGAKK---YS 125 (291)
Q Consensus 71 ~aiIvPHAGy~ySG-----------~~Aa~ay~~l~----~--~~p~~VVILGP~H~~~~~g-----~al~~~~~---~~ 125 (291)
.|+.+||.--.... +-...+|+.+. . .+||+|||+||+|+..+.. ++++.... |.
T Consensus 6 ~~~~~sH~P~i~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~~~~~Pd~Ivvis~~H~~~~~~~~~~~~~I~~~~~~~~~d 85 (302)
T 1b4u_B 6 TGITSSHIPALGAAIQTGTSDNDYWGPVFKGYQPIRDWIKQPGNMPDVVILVYNDHASAFDMNIIPTFAIGCAETFKPAD 85 (302)
T ss_dssp EEEEECCCHHHHHHHHHTCTTSTTTHHHHHHHHHHHHHHTSTTTSCSEEEEEECCCSSSCCTTEEESBEEECSSEECBCB
T ss_pred EEeECCCCCcccCccccCCcchhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCcccccccccCCceEEecCCCCccCc
Confidence 47788886543321 24556777763 3 5899999999999976532 67766555 99
Q ss_pred cCCCCCCCc-----HHHHHHHHhcC---CcccccCCCCCCCcchhchHHHHHHHhhccCCC--cEEEEEEcCCCC-----
Q psy5092 126 TPLYDLKID-----SQIYSELEATN---KFETISMDVDEEEHSLEMQIPYIAKVMEDFKNE--FTIVPVMVGSLS----- 190 (291)
Q Consensus 126 TPLG~v~vD-----~el~~~L~~~~---~~~~~d~~~h~~EHSiEVqLPFLq~~~~~~~~~--~~IVPI~vg~~~----- 190 (291)
+|+|.+++| .+++++|.+.. ++.......+..|||++|||+||+... .+ ++||||.++...
T Consensus 86 ~~~G~~~~~~~~G~peLA~~i~~~l~~~g~~~~~~~~~~lDHG~~vpL~~l~p~~----d~~~ipVVpisv~~~~~p~~~ 161 (302)
T 1b4u_B 86 EGWGPRPVPDVKGHPDLAWHIAQSLILDEFDMTIMNQMDVDHGCTVPLSMIFGEP----EEWPCKVIPFPVNVVTYPPPS 161 (302)
T ss_dssp CSSSBCSSCCEECCHHHHHHHHHHHHHTTCCCEEESSCCBCHHHHHHHHHHHCSC----SSCSSEEEEEEBCCSSSCCCC
T ss_pred ccCCCcCCCCCCCCHHHHHHHHHHHHhcCCCeeccCCcCCCceeeehHHHhcCcc----cCCcCcEEEEeecCCCCCCCC
Confidence 999999997 99999987653 343322234789999999999998754 33 999999998543
Q ss_pred HHHHHHHHHHHHhhh----cCCCeEEEEecCCcccCcCcccccC-CcchHHHHHHHHhcChhchhhhhhhhhccccccCC
Q psy5092 191 TGREAEYGRIFAPYL----ADPRNLFVISSDFCHWGDRFRFTYY-DSAYGEIHQSIEALDRKSPSSSINRVYSILISRGP 265 (291)
Q Consensus 191 ~~~~~~lg~~L~~~~----~~~~~liVaSsDLSH~g~~~gy~p~-~~~D~~iie~I~~lD~~~l~~~~~~~~~~~~~~~~ 265 (291)
.+++.++|++|++++ .+++++||+||||||+.+...+.+. ..+|+.++++| ++|.++|.+..++.+ .--||+
T Consensus 162 ~~~~~~lG~aL~~~~~~~~~d~~VlIIgSG~lSH~l~~~~~g~~~~~fD~~~~~~l-~~d~~~L~~~~~~~~--a~~ag~ 238 (302)
T 1b4u_B 162 GKRCFALGDSIRAAVESFPEDLNVHVWGTGGMSHQLQGPRAGLINKEFDLNFIDKL-ISDPEELSKMPHIQY--LRESGS 238 (302)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCCEEEEEEECCSSCCCSSTTTTBCCHHHHHHHHHHH-HHCHHHHTTCCHHHH--HHHHCT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCCCCcCccchHHHHHHHHHHH-ccCHHHHHhcccchH--HHHcCC
Confidence 689999999999987 3578999999999999874322112 34699999999 999999988875432 334777
Q ss_pred C
Q psy5092 266 S 266 (291)
Q Consensus 266 ~ 266 (291)
.
T Consensus 239 ~ 239 (302)
T 1b4u_B 239 E 239 (302)
T ss_dssp T
T ss_pred C
Confidence 4
No 4
>3vsj_B 2-amino-5-chlorophenol 1,6-dioxygenase beta subun; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_B 3vsi_B* 3vsg_B*
Probab=99.84 E-value=5.2e-21 Score=179.65 Aligned_cols=202 Identities=10% Similarity=0.055 Sum_probs=150.8
Q ss_pred eEEEccCCcccc-c-------------HHHHHHHHHhhCC----CCCCEEEEECCCCCCCCCceeec-----------CC
Q psy5092 71 RAIISPHAGYRY-C-------------GECAAFAYRQISP----ASVQRIFILGPSHYYQLGGCALS-----------GA 121 (291)
Q Consensus 71 ~aiIvPHAGy~y-S-------------G~~Aa~ay~~l~~----~~p~~VVILGP~H~~~~~g~al~-----------~~ 121 (291)
-|+.+||.--++ + -.-...+|+.+.. .+||+||+++|+|......+.+. ..
T Consensus 7 ~a~~~~H~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~PdaIvviS~Hw~~~~~~~~~~~~~~~~~~~~~~f 86 (312)
T 3vsj_B 7 AGFLAPHPPHLVYGENPPQNEPRSQGGWEVLRWAYERARERLDAMKPDVLLVHSPHWITSVGHHFLGVPELSGKSVDPIF 86 (312)
T ss_dssp EEEECCCCTHHHHTTCCTTBCSCCSCCCHHHHHHHHHHHHHHHHHCCSEEEEEEEEEEESSSEEEECCSEEEEEEECSSC
T ss_pred EEEECCCCCeecccccccccCcccchhHHHHHHHHHHHHHHHhhcCCCEEEEEcCCCCccCCeEEeccCCCCccccccCC
Confidence 478888864332 0 1344556766642 47999999999776655433331 12
Q ss_pred CccccCCCCCCCcHHHHHHHHhcC---Cccc--ccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcC----CCCHH
Q psy5092 122 KKYSTPLYDLKIDSQIYSELEATN---KFET--ISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVG----SLSTG 192 (291)
Q Consensus 122 ~~~~TPLG~v~vD~el~~~L~~~~---~~~~--~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg----~~~~~ 192 (291)
..|.++-+.++.|.+++++|.+.. ++.. .++..+..|||++|||+||+ .. .+++||||.++ ..+++
T Consensus 87 ~~f~~~~y~~~gd~eLA~~i~~~l~~~g~~~~~~~~~~~~lDHG~~vpL~~l~-p~----~~~pVVpis~~~~p~~~~~~ 161 (312)
T 3vsj_B 87 PNVFRYDFSLNVDVELAEACAEEGRKAGLVTKMMRNPKFRVDYGTITTLHLIR-PQ----WDIPVVGISANNSPYYLNTK 161 (312)
T ss_dssp TTTCEEEEEEEBCHHHHHHHHHHHHHTTCCEEEECCTTCCCCHHHHHHHHHHC-TT----CCSCEEEEEEESHHHHTCHH
T ss_pred CccCcccCCCCCCHHHHHHHHHHHHHcCCceeeccCccccCCcchHhHHHHhC-CC----CCCCEEEEeecCCCCCCChh
Confidence 334456667999999999988643 4443 23567899999999999998 33 78999999998 48888
Q ss_pred ----HHHHHHHHHHhhhc--CCCeEEEEecCCcccCcCccc---------ccCC----cchHHHHHHHHhcChhchhhhh
Q psy5092 193 ----REAEYGRIFAPYLA--DPRNLFVISSDFCHWGDRFRF---------TYYD----SAYGEIHQSIEALDRKSPSSSI 253 (291)
Q Consensus 193 ----~~~~lg~~L~~~~~--~~~~liVaSsDLSH~g~~~gy---------~p~~----~~D~~iie~I~~lD~~~l~~~~ 253 (291)
++.++|++|+++++ +++++||+||||||+++.... .++. .+|+.++++|+++|.++|.++.
T Consensus 162 ~~~~~~~~lG~aL~~~~~~~d~~Vlii~SG~lsH~l~~~~~~~~~~~~~~~~~~~~a~~fD~~~~~~l~~gD~~~L~~~~ 241 (312)
T 3vsj_B 162 EGMSEMDVLGKATREAIRKTGRKAVLLASNTLSHWHFHEEPTIPEDMSKEYPATMAGYQWDIRMIELMRQGKTSEVFKLL 241 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEEEEEECCCSCCCCCCSCCSSTTCGGGCCCSCHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCEEEEEECcccccCCcccccccccccccCCCCHHHHHHHHHHHHHHHcCCHHHHHhCC
Confidence 99999999999886 789999999999999985432 2222 3699999999999999999999
Q ss_pred hhhhccc-cccCCCCCcchhhHHHHhhcC
Q psy5092 254 NRVYSIL-ISRGPSDEEGHGLSLMEILKP 281 (291)
Q Consensus 254 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 281 (291)
.++.+-. -.| |.++...++-.++.
T Consensus 242 ~e~~~~a~g~c----G~~~~~~l~gAl~~ 266 (312)
T 3vsj_B 242 PQFIDEAFAEV----KSGAFTWMHAAMQY 266 (312)
T ss_dssp HHHHHHHTCGG----GGSHHHHHHHHTTC
T ss_pred HHHHHHhcccc----CHHHHHHHHHHhcC
Confidence 8765533 345 78888888877764
No 5
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=99.41 E-value=4.8e-13 Score=123.27 Aligned_cols=186 Identities=13% Similarity=0.164 Sum_probs=129.9
Q ss_pred eEEEccCCccccc--HHHHHHHHHhhCC--CCCCEEEEECCCCCCCCCceeecCCCcccc-------C--C----CCCCC
Q psy5092 71 RAIISPHAGYRYC--GECAAFAYRQISP--ASVQRIFILGPSHYYQLGGCALSGAKKYST-------P--L----YDLKI 133 (291)
Q Consensus 71 ~aiIvPHAGy~yS--G~~Aa~ay~~l~~--~~p~~VVILGP~H~~~~~g~al~~~~~~~T-------P--L----G~v~v 133 (291)
-++..+|-+-... ...+..+++.+.+ .+||.||+++| |+... ..++......+| | + ...+.
T Consensus 16 P~~flsHGsP~~~~~~~~~~~~l~~l~~~l~~P~aIvviSa-Hw~~~-~~~V~~~~~~~~i~Df~gfp~~ly~~~y~~~g 93 (271)
T 2pw6_A 16 PALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSA-HWFTR-GTGVTAMETPPTIHDFGGFPQALYDTHYPAPG 93 (271)
T ss_dssp CEEEEECC-CCCCSSCCHHHHHHHHHHHHSCCCSEEEEEEE-EEEES-SEEEECCCC-------------CCSCCCCCCB
T ss_pred CEEEECCCCCccCCCchHHHHHHHHHHHhCCCCCEEEEEcC-CCCCC-ceEEEeCCCCCCcCCcCcCCCcCcccccCCCC
Confidence 3556677554222 2246677877743 38999999999 54332 245544333332 2 2 25789
Q ss_pred cHHHHHHHHhcC---CcccccCCCCCCCcchhchHHHHHHHhhccCCCcEEEEEEcC-CCCHHHHHHHHHHHHhhhcCCC
Q psy5092 134 DSQIYSELEATN---KFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVG-SLSTGREAEYGRIFAPYLADPR 209 (291)
Q Consensus 134 D~el~~~L~~~~---~~~~~d~~~h~~EHSiEVqLPFLq~~~~~~~~~~~IVPI~vg-~~~~~~~~~lg~~L~~~~~~~~ 209 (291)
|.++++++.+.. ++.. +......||+.-|+|-|+ +++ .+++||+|.+. ..+++++.++|++|+++ .+++
T Consensus 94 ~peLA~~i~~~l~~~g~~~-~~~~~glDHG~~vPL~~m---~p~--adiPVVqlSi~~~~~p~~~~~lG~aL~~l-rd~~ 166 (271)
T 2pw6_A 94 SPALAQRLVELLAPIPVTL-DKEAWGFDHGSWGVLIKM---YPD--ADIPMVQLSIDSSKPAAWHFEMGRKLAAL-RDEG 166 (271)
T ss_dssp CHHHHHHHHHHHTTSCEEE-ESSCCCCCHHHHHHHHHH---STT--CCSCEEEEEEETTSCHHHHHHHHHHHGGG-GGGT
T ss_pred CHHHHHHHHHHHHhcCCcc-cccccCCCcchhhhHHHh---cCC--CCCCEEEEeCCCCCCHHHHHHHHHHHHHH-HHcC
Confidence 999998887644 3433 224567999999998774 433 57999999997 57899999999999985 4679
Q ss_pred eEEEEecCCcccCcCcccc------cC-CcchHHHHHHHH-hc--ChhchhhhhhhhhccccccCCCC
Q psy5092 210 NLFVISSDFCHWGDRFRFT------YY-DSAYGEIHQSIE-AL--DRKSPSSSINRVYSILISRGPSD 267 (291)
Q Consensus 210 ~liVaSsDLSH~g~~~gy~------p~-~~~D~~iie~I~-~l--D~~~l~~~~~~~~~~~~~~~~~~ 267 (291)
++||+|+++||.....+.. +. ..+|+.+.+.|+ +. |.++|.+..++ ..---+||++
T Consensus 167 VlIigSG~lsHnL~~~~~~~~~~~~~~~~eFD~~~~~~l~~~g~~d~~~L~~~~~~--~~a~~a~p~~ 232 (271)
T 2pw6_A 167 IMLVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDH--EGGTLSNPTP 232 (271)
T ss_dssp EEEEEEECSSCCTTSCCSSSCCCCCHHHHHHHHHHHTTTTCCSCGGGCTTTSGGGS--TTHHHHCSSS
T ss_pred cEEEEeCccccCCCcccccCcCCCCchHHHHHHHHHHHHHhcCCcCHHHHhCcccC--hhHHHhCCch
Confidence 9999999999998865431 11 136999999999 88 88888888765 5566778874
No 6
>3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A*
Probab=21.35 E-value=1.6e+02 Score=26.80 Aligned_cols=57 Identities=11% Similarity=0.137 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhhccCCCCCceEEEccCCcccccHHHHHHHHHhhC--CCCCCEEEEECCCCCCC
Q psy5092 49 TKELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGECAAFAYRQIS--PASVQRIFILGPSHYYQ 112 (291)
Q Consensus 49 ~~eL~~~l~~~l~~~~~~~~~~~aiIvPHAGy~ySG~~Aa~ay~~l~--~~~p~~VVILGP~H~~~ 112 (291)
.+++.+.|+..++..+. -+..++ |+...|.++.++.+.+. +.+.+++|.|||.|++.
T Consensus 114 ~~~la~~I~~l~~~~g~----~~v~LV---GHSmGGlvA~~al~~~p~~~~~V~~lV~lapp~~Gt 172 (316)
T 3icv_A 114 TEYMVNAITTLYAGSGN----NKLPVL---TWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGT 172 (316)
T ss_dssp HHHHHHHHHHHHHHTTS----CCEEEE---EETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTTCB
T ss_pred HHHHHHHHHHHHHHhCC----CceEEE---EECHHHHHHHHHHHhccccchhhceEEEECCCCCCc
Confidence 44556666665544321 124443 66888888855444332 45788999999988754
No 7
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=17.51 E-value=3.7e+02 Score=23.95 Aligned_cols=100 Identities=13% Similarity=0.217 Sum_probs=49.6
Q ss_pred CCCCCCCceeecCCCccccCCCCCCCcHHHHHHHHh----cC--Cccccc--CCCCCCCcchhchHHHHHHHhhccCCCc
Q psy5092 108 SHYYQLGGCALSGAKKYSTPLYDLKIDSQIYSELEA----TN--KFETIS--MDVDEEEHSLEMQIPYIAKVMEDFKNEF 179 (291)
Q Consensus 108 ~H~~~~~g~al~~~~~~~TPLG~v~vD~el~~~L~~----~~--~~~~~d--~~~h~~EHSiEVqLPFLq~~~~~~~~~~ 179 (291)
+|+..+.|+... .-|||-+-.+|.+..+++.+ .+ ++.... -+... =|.|=+.-.++...+.....+
T Consensus 9 ~~~~~~~Gv~~a----~vTPf~dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~--Ls~eEr~~vi~~~~~~~~grv 82 (306)
T 1o5k_A 9 HHHHMFRGVGTA----IVTPFKNGELDLESYERLVRYQLENGVNALIVLGTTGESPT--VNEDEREKLVSRTLEIVDGKI 82 (306)
T ss_dssp ---CCCSEEEEE----CCCCEETTEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGG--CCHHHHHHHHHHHHHHHTTSS
T ss_pred hhhcccCCeeee----eecCcCCCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhh--CCHHHHHHHHHHHHHHhCCCC
Confidence 566677776543 45777444678776666554 22 111111 11111 122223344444432111455
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHHhhhcCCCeEEEEec
Q psy5092 180 TIVPVMVGSLSTGREAEYGRIFAPYLADPRNLFVISS 216 (291)
Q Consensus 180 ~IVPI~vg~~~~~~~~~lg~~L~~~~~~~~~liVaSs 216 (291)
+|+ +-+|..+.+++.++++..+++ +-+.++++.-
T Consensus 83 pVi-aGvg~~st~~ai~la~~A~~~--Gadavlv~~P 116 (306)
T 1o5k_A 83 PVI-VGAGTNSTEKTLKLVKQAEKL--GANGVLVVTP 116 (306)
T ss_dssp CEE-EECCCSCHHHHHHHHHHHHHH--TCSEEEEECC
T ss_pred eEE-EcCCCccHHHHHHHHHHHHhc--CCCEEEECCC
Confidence 554 566777888777777766654 5555666544
No 8
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=17.50 E-value=2.7e+02 Score=24.16 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=39.8
Q ss_pred CceEEEccCCcccccHHHHHHHHHhhCCCCCCEEEEECCCCCCCCCceeecCCCccccCCCCCCCcHHHHHHHHhcC
Q psy5092 69 PARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPSHYYQLGGCALSGAKKYSTPLYDLKIDSQIYSELEATN 145 (291)
Q Consensus 69 ~~~aiIvPHAGy~ySG~~Aa~ay~~l~~~~p~~VVILGP~H~~~~~g~al~~~~~~~TPLG~v~vD~el~~~L~~~~ 145 (291)
.++-+|++ .-||.+|..++..+. + .+|+++ |+..+ ..| |..+.|.|..++|.+..
T Consensus 51 ~Ik~iVVA----SssG~TA~k~~e~~~--~--~lVvVT--h~~GF-----------~~p-g~~e~~~e~~~~L~~~G 105 (206)
T 1t57_A 51 GIRNFVVA----SVSGETALRLSEMVE--G--NIVSVT--HHAGF-----------REK-GQLELEDEARDALLERG 105 (206)
T ss_dssp TCCEEEEE----CSSSHHHHHHHTTCC--S--EEEEEC--CCTTS-----------SST-TCCSSCHHHHHHHHHHT
T ss_pred CCCEEEEE----eCCCHHHHHHHHHcc--C--CEEEEe--CcCCC-----------CCC-CCCcCCHHHHHHHHhCC
Confidence 45677777 578999999888662 2 676663 44333 234 77889999999999876
No 9
>3m7v_A Phosphopentomutase; structural genomics, nysgrc, cytoplasm, isomerase, manganese binding, PSI-2, protein structure initiative; 2.00A {Streptococcus mutans}
Probab=16.58 E-value=87 Score=27.66 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhcCCCeEEEEecCC
Q psy5092 195 AEYGRIFAPYLADPRNLFVISSDF 218 (291)
Q Consensus 195 ~~lg~~L~~~~~~~~~liVaSsDL 218 (291)
..+|++|..+ +++++||++||=
T Consensus 321 ~~vg~~l~~L--~entliiftsDn 342 (413)
T 3m7v_A 321 ERLPEIIAAM--KVDDLLLITADH 342 (413)
T ss_dssp HHHHHHHHTC--CTTEEEEEECSS
T ss_pred hHHHHHHHhc--CCCCEEEEEccC
Confidence 4566666543 468999999994
No 10
>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer, psychrophilic bacteria, crystallography, hydrolase; 1.40A {Vibrio SP}
Probab=15.80 E-value=2.1e+02 Score=28.01 Aligned_cols=34 Identities=6% Similarity=0.169 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhhc----CCCeEEEEecCCcccCcCccc
Q psy5092 194 EAEYGRIFAPYLA----DPRNLFVISSDFCHWGDRFRF 227 (291)
Q Consensus 194 ~~~lg~~L~~~~~----~~~~liVaSsDLSH~g~~~gy 227 (291)
..++-++++.+++ +++||||+.+|=+|=|.-.+|
T Consensus 288 ~~~fD~AV~~A~~~~~~~~dTLIIVTADH~tGGl~lg~ 325 (502)
T 3e2d_A 288 LLKFDEAIQTVYEWAKDREDTIVIVTADHETGSFGFSY 325 (502)
T ss_dssp HHHHHHHHHHHHHHHTTCSSEEEEEEEEEEESCCEEBC
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCCCccccc
Confidence 3456666655443 578999999999887655444
Done!