RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5092
(291 letters)
>gnl|CDD|153373 cd07361, MEMO_like, Memo (mediator of ErbB2-driven cell motility)
is co-precipitated with the C terminus of ErbB2, a
protein involved in cell motility. This subfamily is
composed of Memo (mediator of ErbB2-driven cell
motility) and similar proteins. Memo is a protein that
is co-precipitated with the C terminus of ErbB2, a
protein involved in cell motility. It is required for
the ErbB2-driven cell mobility and is found in protein
complexes with cofilin, ErbB2 and PLCgamma1. However,
Memo is not homologous to any known signaling proteins,
and its function in ErbB2 signaling is not known.
Structural studies show that Memo binds directly to a
specific ErbB2-derived phosphopeptide. Memo is
homologous to class III nonheme iron-dependent extradiol
dioxygenases, however, no metal binding or enzymatic
activity can be detected for Memo. This subfamily also
contains a few members containing a C-terminal
AMMECR1-like domain. The AMMECR1 protein was proposed to
be a regulatory factor that is potentially involved in
the development of AMME contiguous gene deletion
syndrome.
Length = 266
Score = 244 bits (626), Expect = 7e-81
Identities = 81/199 (40%), Positives = 103/199 (51%), Gaps = 20/199 (10%)
Query: 51 ELDKQLGNWLNNAE--LSHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPS 108
EL +QL +L A P +AII PHAGY Y G AA AY + P +R+ ILGPS
Sbjct: 15 ELRRQLEAFLAAAPGPPPKEPPKAIIVPHAGYVYSGPVAAHAYAALDPGKPKRVVILGPS 74
Query: 109 HYYQLGGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPYI 168
H GCALS A + TPL D+ +D ++ EL F EEEHSLE+Q+P++
Sbjct: 75 HTGYGRGCALSSAGAWETPLGDVPVDRELVEELLKLGGFIVDDELAHEEEHSLEVQLPFL 134
Query: 169 AKVMEDFKNEFTIVPVMVGSLSTGREAEYGRIFAPYLADPRNLFVISSDFCHWGDRFRFT 228
++ DFK IVP++VG S + YL DP L VISSDF H+G R
Sbjct: 135 QYLLPDFK----IVPILVGDQSPEAAEALAEALSKYLLDPDTLIVISSDFSHYGPR---- 186
Query: 229 YYDSAYGEIHQSIEALDRK 247
+S E LDRK
Sbjct: 187 ----------ESAERLDRK 195
>gnl|CDD|216756 pfam01875, Memo, Memo-like protein. This family contains members
from all branches of life. The molecular function of
this protein is unknown, but Memo (mediator of
ErbB2-driven cell motility) a human protein is included
in this family. It has been suggested that Memo controls
cell migration by relaying extracellular chemotactic
signals to the microtubule cytoskeleton.
Length = 274
Score = 172 bits (438), Expect = 2e-52
Identities = 67/181 (37%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 49 TKELDKQL-GNWLNNAELSHGPARAIISPHAGYRYCGECAAFAYRQI-SPASVQRIFILG 106
+EL QL +L N AR II PHAGY Y G AA AY+ + S +R+ ILG
Sbjct: 13 PEELRAQLEWFFLKNTGPGGITARKIICPHAGYVYSGPVAAHAYKALESDGEPERVVILG 72
Query: 107 PSHYYQLGGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVD-EEEHSLEMQI 165
P+H ++S ++ TPL D+K+D ++ EL + + ++ EHSLE+Q+
Sbjct: 73 PNHTGLGSPVSVSPFGEWETPLGDVKVDEELVEELVKKSPID-DLDELAHLYEHSLEVQL 131
Query: 166 PYIAKVMEDFKNEFTIVPVMVGSLSTGREAEYGRIFAPYLADP-RNLFVISSDFCHWGDR 224
P++ + ++ EF IVP++VG E G A + DP RNL + SSDF H+G R
Sbjct: 132 PFLQYLFDE--AEFKIVPILVGMQDPETAKELGEAIAEVIKDPGRNLVIASSDFSHYGRR 189
Query: 225 F 225
F
Sbjct: 190 F 190
>gnl|CDD|234551 TIGR04336, AmmeMemoSam_B, AmmeMemoRadiSam system protein B.
Members of this protein family belong to the same domain
family as the mammalian protein Memo (Mediator of
ErbB2-driven cell MOtility). Members of the present
family occur as part of a three gene system with an
uncharacterized radical SAM enzyme and a homolog of the
mammalian protein AMMECR1, a mammalian protein named for
AMME - Alport syndrome, Mental Retardation, Midface
hypoplasia, and Elliptocytosis. Memo in humans has
protein-protein interaction activity with binding of
phosphorylated Try, but members of this family may be
active as enzymes, as suggested by homology to a class
of nonheme iron dioxygenases.
Length = 269
Score = 141 bits (357), Expect = 2e-40
Identities = 68/217 (31%), Positives = 100/217 (46%), Gaps = 14/217 (6%)
Query: 50 KELDKQLGNWLNNAELSHGPAR--AIISPHAGYRYCGECAAFAYRQISPASVQRIFILGP 107
+EL +Q+ +L++A GP R +I PHAGY Y G AA AY ++ + + +LGP
Sbjct: 15 EELREQIEEFLSDAPPEGGPGRAPGLIVPHAGYVYSGPVAAHAYAALAKGRPETVVLLGP 74
Query: 108 SHYYQLGGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPY 167
+H G AL + TPL D+ +D ++ EL + + EHSLE+Q+P+
Sbjct: 75 NHTGYGSGIALPPEGSWETPLGDVPVDEELAEELLERSPVIELDDLAHLREHSLEVQLPF 134
Query: 168 IAKVMEDFKNEFTIVPVMVGSLSTGREAEYGRIFAPYLA--DPRNLFVISSDFCHWGDRF 225
+ DFK IVP++VG S A G A + L V SSD H+
Sbjct: 135 LQYFFPDFK----IVPIVVGDQSPEVAAALGEALAEAIKELGRDVLIVASSDLSHYEP-- 188
Query: 226 RFTYYDSAYGEIHQSIEALDRKSPSSSINRVYSILIS 262
Y+ A +IEA+ P + V IS
Sbjct: 189 ----YEEARRLDRAAIEAILALDPEGLYDVVAEKNIS 221
>gnl|CDD|224274 COG1355, COG1355, Predicted dioxygenase [General function
prediction only].
Length = 279
Score = 133 bits (337), Expect = 2e-37
Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 8/155 (5%)
Query: 70 ARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPSHYYQLGGCALSGAKKYSTPLY 129
A I+ PHAGYRY G AA Y + + ILGP+H ++S ++ TPL
Sbjct: 46 AIGIVVPHAGYRYSGPTAAHVYSALDEGEPDTVVILGPNHTGLGSPVSVSPEGEWETPLG 105
Query: 130 DLKIDSQIYSELEATNKFETISMD--VDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVG 187
D+K+DS++ EL + I +D EHS+E+Q+P++ + F +EF IVP+ +G
Sbjct: 106 DVKVDSELAEELVKHSGI--IDLDELAHLYEHSIEVQLPFLQYL---FGDEFKIVPICMG 160
Query: 188 SLSTGREAEYGRIFAPYLADP-RNLFVISSDFCHW 221
+ GR A + + L + SSDF H+
Sbjct: 161 MQDKEVARDIGRAIAKVIKELGDALIIASSDFTHY 195
>gnl|CDD|153371 cd07320, Extradiol_Dioxygenase_3B_like, Subunit B of Class III
Extradiol ring-cleavage dioxygenases. Dioxygenases
catalyze the incorporation of both atoms of molecular
oxygen into substrates using a variety of reaction
mechanisms, resulting in the cleavage of aromatic rings.
Two major groups of dioxygenases have been identified
according to the cleavage site of the aromatic ring.
Intradiol enzymes cleave the aromatic ring between two
hydroxyl groups, whereas extradiol enzymes cleave the
aromatic ring between a hydroxylated carbon and an
adjacent non-hydroxylated carbon. Extradiol dioxygenases
can be further divided into three classes. Class I and
II enzymes are evolutionary related and show sequence
similarity, with the two-domain class II enzymes
evolving from the class I enzyme through gene
duplication. Class III enzymes are different in sequence
and structure and usually have two subunits, designated
A and B. This model represents the catalytic subunit B
of extradiol dioxygenase class III enzymes. Enzymes
belonging to this family include Protocatechuate
4,5-dioxygenase (LigAB), 2'-aminobiphenyl-2,3-diol
1,2-dioxygenase (CarB), 4,5-DOPA Dioxygenase,
2,3-dihydroxyphenylpropionate 1,2-dioxygenase, and
3,4-dihydroxyphenylacetate (homoprotocatechuate)
2,3-dioxygenase (HPCD). There are also some family
members that do not show the typical dioxygenase
activity.
Length = 260
Score = 101 bits (254), Expect = 1e-25
Identities = 49/220 (22%), Positives = 78/220 (35%), Gaps = 41/220 (18%)
Query: 71 RAIISPHAGYRYCGECAAFA---------YRQISPASVQRIFILGPSHYYQLGGCALSGA 121
AII PH Y E ++I I ++ P H + A++ A
Sbjct: 1 LAIIIPHGPALYAAEDTGKTRNDYQPIEISKRIKEKRPDTIIVVSPHHLVIISATAITCA 60
Query: 122 KKYST---------PLYDLKIDSQIYSELEATNKFE---TISMDVDEEEHSLEMQIPYIA 169
+ + T P+YD+K D + E+ E TI ++D +H + + YI
Sbjct: 61 ETFETADSGQWGRRPVYDVKGDPDLAWEIAEELIKEIPVTIVNEMDGLDHGTLVPLSYIF 120
Query: 170 KVMEDFKNEFTIVPVMVGSL--STGREAEYGRIFAPYL--ADPRNLFVISSDFCHWGDRF 225
DFK ++P+ VG L + E+G+ + +D R V S D H
Sbjct: 121 GDPWDFK----VIPLSVGVLVPPFAKLFEFGKAIRAAVEPSDLRVHVVASGDLSHQLQGD 176
Query: 226 RFTYYDSAYGEIHQSIEALDRKSPSSSINRVYSILISRGP 265
R S+ + E D+ V L P
Sbjct: 177 RP----SSQSGYYPIAEEFDK--------YVIDNLEELDP 204
>gnl|CDD|234836 PRK00782, PRK00782, hypothetical protein; Provisional.
Length = 267
Score = 82.7 bits (205), Expect = 1e-18
Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 36/190 (18%)
Query: 49 TKELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPS 108
+EL K L + + + PHAGY Y G AA Y + A + I+GP+
Sbjct: 16 PEELLKMLSEFFRDLGEESRKIIGAVVPHAGYVYSGRTAARVYAALPEA--ETFVIIGPN 73
Query: 109 HYYQLGGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEE----EHSLEMQ 164
H A+S + + TPL D+++D ++ L + +D+DE EHS+E+Q
Sbjct: 74 HTGLGSPVAVS-PEGWKTPLGDVEVDEELAKALASG------IIDLDELAHKYEHSIEVQ 126
Query: 165 IPYIAKVMEDFKNEFTIVPVMVG------SLSTGRE-----AEYGRIFAPYLADPRNLFV 213
+P++ + F +F IVP+ +G + G E G+ + +
Sbjct: 127 LPFLQYL---FGKDFKIVPICLGMQDEETAREVGEAIAEAIEELGKKV---------VVI 174
Query: 214 ISSDFCHWGD 223
SSDF H+
Sbjct: 175 ASSDFTHYEP 184
>gnl|CDD|183070 PRK11275, pstC, phosphate transporter permease subunit PstC;
Provisional.
Length = 319
Score = 32.4 bits (74), Expect = 0.24
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 19/52 (36%)
Query: 163 MQIPYIAKVMEDFKNEFTIVPVMVGSLSTGREAEYG----------RIFAPY 204
M IPYIA VM D F PVM+ +E+ YG RI P+
Sbjct: 180 MIIPYIAAVMRDV---FEQTPVMM------KESAYGIGCTTWEVIWRIVLPF 222
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 31.0 bits (71), Expect = 0.90
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 87 AAFAYRQISPASVQRIFILGPSHYYQLGGCALSGAKKYSTPLYDLKIDSQIY 138
A FAYRQ +QR +L P + G A SG + L DL ID + Y
Sbjct: 604 AGFAYRQTFDKFLQRYKLLSPKTWPTWPGDAKSGVE---VILKDLNIDPEEY 652
>gnl|CDD|176556 cd08619, PI-PLCXDc_plant, Catalytic domain of
phosphatidylinositol-specific phospholipase C, X domain
containing proteins found in plants. The CD corresponds
to the catalytic domain present in uncharacterized plant
phosphatidylinositol-specific phospholipase C, X domain
containing proteins (PI-PLCXD). The typical eukaryotic
phosphoinositide-specific phospholipase C (PI-PLC, EC
3.1.4.11) has a multidomain organization that consists
of a PLC catalytic core domain, and various regulatory
domains. The catalytic core domain is assembled from two
highly conserved X- and Y-regions split by a divergent
linker sequence. In contrast, plant PI-PLCXDs contain a
single TIM-barrel type catalytic domain, X domain, and
are more closely related to bacterial PI-PLCs, which
participate in Ca2+-independent PI metabolism,
hydrolyzing the membrane lipid phosphatidylinositol (PI)
to produce phosphorylated myo-inositol and
diacylglycerol (DAG). Although the biological function
of plant PI-PLCXDs still remains unclear, it may
distinct from that of typical eukaryotic PI-PLCs.
Length = 285
Score = 29.4 bits (66), Expect = 2.3
Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 24/112 (21%)
Query: 122 KKYSTPLYDLKIDSQIYSELEATNKFETISMDV----------DEEEHSLEMQIPYIAKV 171
+K P + S ++S A K I D+ + E + Y +V
Sbjct: 167 RKSPAP----AVGSPLWSS--AYLKDNWIDTDLPVTKFESNIKNLLEQPPQDSRKYFYRV 220
Query: 172 MEDFKNEFTIVPVMVGSLSTGREAEYGRIFAP-----YLADPRNLFVISSDF 218
+F P++ T R ++Y R+F P LAD L + S DF
Sbjct: 221 ENTVTPQFD-NPILCVKPVTRRISQYARLFIPEVFKRGLAD--RLQIFSLDF 269
>gnl|CDD|172940 PRK14465, PRK14465, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 342
Score = 28.8 bits (64), Expect = 3.2
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 12/119 (10%)
Query: 152 MDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSLSTGRE-AEYGRIFAPYLADPRN 210
MD+ EE+ LE + + K T VM+ ++ GRE A A L N
Sbjct: 230 MDI-EEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKIN 288
Query: 211 LFVISSDFCHWGDRFRFTYYDSAYGEIHQSIEA-----LDRKSPSSSINRVYSILISRG 264
+ ++++F W R T D E +E L+R+SP I +L S+
Sbjct: 289 VIPLNTEFFGWR---RPT--DDEVAEFIMLLEPAGVPILNRRSPGKDIFGACGMLASKS 342
>gnl|CDD|183182 PRK11536, PRK11536, 6-N-hydroxylaminopurine resistance protein;
Provisional.
Length = 223
Score = 28.2 bits (63), Expect = 4.2
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 7 IWMGNCFSQGPEYALVTLCTVLLPRPPCYKLSNH 40
+++G+ F G L V PR PCYKL+ H
Sbjct: 98 VFIGDIFRWGE-----ALIQVTQPRSPCYKLNYH 126
>gnl|CDD|132014 TIGR02969, mam_aldehyde_ox, aldehyde oxidase. Members of this
family are mammalian aldehyde oxidase (EC 1.2.3.1)
isozymes, closely related to xanthine
dehydrogenase/oxidase.
Length = 1330
Score = 28.8 bits (64), Expect = 4.6
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 166 PYIAKVMEDFKNEFTIVPVMVGSLSTGREAEYGRIFAPYLADP 208
P K + + K ++ PV++G+ S G E ++ +F P + P
Sbjct: 242 PVTLKELLEAKFKYPQAPVVMGNTSVGPEVKFKGVFHPVIISP 284
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.423
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,780,905
Number of extensions: 1394048
Number of successful extensions: 1068
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1052
Number of HSP's successfully gapped: 13
Length of query: 291
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 195
Effective length of database: 6,679,618
Effective search space: 1302525510
Effective search space used: 1302525510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)