RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5092
(291 letters)
>3bcz_A Protein MEMO1; alpha/beta structure, peptide binding protein; 2.10A
{Homo sapiens} PDB: 3bd0_A
Length = 293
Score = 231 bits (591), Expect = 2e-75
Identities = 116/198 (58%), Positives = 150/198 (75%)
Query: 50 KELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPSH 109
+L+ QL WL+ + + PARAII+PHAGY YCG CAA AY+Q+ P+ +RIFILGPSH
Sbjct: 18 PQLNAQLEGWLSQVQSTKRPARAIIAPHAGYTYCGSCAAHAYKQVDPSITRRIFILGPSH 77
Query: 110 YYQLGGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPYIA 169
+ L CALS Y TPLYDL+ID +IY EL T FE +S+ DE+EHS+EM +PY A
Sbjct: 78 HVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQTDEDEHSIEMHLPYTA 137
Query: 170 KVMEDFKNEFTIVPVMVGSLSTGREAEYGRIFAPYLADPRNLFVISSDFCHWGDRFRFTY 229
K ME K+EFTI+PV+VG+LS +E E+G++F+ YLADP NLFV+SSDFCHWG RFR++Y
Sbjct: 138 KAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSY 197
Query: 230 YDSAYGEIHQSIEALDRK 247
YD + GEI++SIE LD+
Sbjct: 198 YDESQGEIYRSIEHLDKM 215
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 4e-04
Identities = 30/204 (14%), Positives = 54/204 (26%), Gaps = 64/204 (31%)
Query: 65 LSHGPARAIIS-PHAGYRYCGECAAFAYRQISPASVQRIFILGPSHYYQLGGCALSGAKK 123
LSHG ++ P A + F Q+ Q F K
Sbjct: 11 LSHGSLEHVLLVPTASF--------FIASQL-----QEQF-----------------NKI 40
Query: 124 YSTPLYDLKIDSQIYSELEATNKF-ETISMDVDEEEHSLEMQIPYIAKVMEDFKNEF--- 179
P D + + E KF +S V+ + Q+ + + +F+N +
Sbjct: 41 LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV--LNLCLTEFENCYLEG 98
Query: 180 ----TIVPVMVGSLSTGREAEYGRIFAPYLADPRNLFVISSDFCHWGDRFRFTYYDSAYG 235
+ ++ T I A R +
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITA------------RIMAKR--------PFD 138
Query: 236 EIHQSIEALDRKSPSSSINRVYSI 259
+ S AL R + ++ +I
Sbjct: 139 KKSNS--ALFRAVGEGNA-QLVAI 159
Score = 30.8 bits (69), Expect = 0.72
Identities = 42/216 (19%), Positives = 68/216 (31%), Gaps = 56/216 (25%)
Query: 32 PPCYKLS------NHLRFKCSKQTKEL--DKQLGNWLNNAELSHGPARAIIS--PHAGYR 81
P LS ++ +K L KQ+ L N G ++S P + Y
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN-----GAKNLVVSGPPQSLYG 388
Query: 82 YC----GECAAFAYRQ--ISPASVQRI------F--ILGP--SHYYQ---------LGGC 116
A Q I P S +R F + P SH L
Sbjct: 389 LNLTLRKAKAPSGLDQSRI-PFS-ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN 446
Query: 117 ALS-GAKKYSTPLYDLK--IDSQIYSELEATNKFETI-SMDVDEEE-------HSLEM-- 163
+S AK P+YD D ++ S + + I + V E H L+
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP 506
Query: 164 -QIPYIAKVMEDFKNEFTIVPVMVGSLSTGREAEYG 198
+ + K+ + ++ G+L + +YG
Sbjct: 507 GGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
Score = 29.6 bits (66), Expect = 1.4
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 24/72 (33%)
Query: 49 TKELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGECAAFAYRQISPASVQRIFILGPS 108
T+ L+ + WL N P+ P Y P S I ++ +
Sbjct: 210 TQGLN--ILEWLEN------PSNT---PDKDY--------LLS---IPISCPLIGVIQLA 247
Query: 109 HYYQLGGCALSG 120
HY L G
Sbjct: 248 HYVVT--AKLLG 257
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.002
Identities = 51/326 (15%), Positives = 83/326 (25%), Gaps = 115/326 (35%)
Query: 29 LPRPPCY-KLSNHLRFKCSKQTKELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGEC- 86
+ R Y KL L EL + G G G+
Sbjct: 131 VSRLQPYLKLRQAL--------LELRPAKNVLI------DGVL--------G---SGKTW 165
Query: 87 -AAFAYRQISPASVQRIFILGPSHYYQLGGCALSGAKKYSTPLYDLKIDSQIYSEL---- 141
A VQ + L C ++P L++ ++ ++
Sbjct: 166 VALDVCLS---YKVQCKMD-FKIFWLNLKNC--------NSPETVLEMLQKLLYQIDPNW 213
Query: 142 -EATNKFETISMDVDEEEHSLEMQI---PY-----I------AKVMEDF----------- 175
++ I + + + L + PY + AK F
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 176 --------KNEFTIVPVMVGSLSTGREAEYGRIFAPYL----AD-PR-----NLFVIS-- 215
T + T E + YL D PR N +S
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 216 ----SDF-CHWGDRFRFTYYDSAYGEIHQSIEALD----RK--------SPSSSI-NRVY 257
D W D ++ D I S+ L+ RK PS+ I +
Sbjct: 334 AESIRDGLATW-DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 258 SILISRGPSDEEG------HGLSLME 277
S++ + H SL+E
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVE 418
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 28.3 bits (64), Expect = 3.5
Identities = 15/65 (23%), Positives = 19/65 (29%), Gaps = 10/65 (15%)
Query: 81 RYCG--E-----CAAFAYRQISPASVQRIFILGPSHYYQLGGCALSGAKKYSTPLYDLKI 133
RY G E A FA R R +L + G A + L I
Sbjct: 609 RYLGLLENVRVRRAGFAGRIEYTRFYNRYKMLCKKTWPSFNGTAKQATELI---LQQHNI 665
Query: 134 DSQIY 138
D +
Sbjct: 666 DKEEI 670
>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28;
AT1G70830, BET V1-like, structural genomics, protein
structure initiative; NMR {Arabidopsis thaliana}
Length = 166
Score = 26.8 bits (59), Expect = 6.9
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 109 HYYQLGGCALSGAKKYSTPLYDLKIDSQIYSELEATNKFETISMDVDEEEHSLEMQIPYI 168
+ + G + K + + S + ++E IS +V E L+ + +
Sbjct: 96 TFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYEKISEEVAHPETLLQFCV-EV 154
Query: 169 AKVMEDF--KNE 178
+K +++ E
Sbjct: 155 SKEIDEHLLAEE 166
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine
biosynthesis, STRU genomics, TB structural genomics
consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium
tuberculosis} PDB: 1hkv_A* 1hkw_A
Length = 467
Score = 27.2 bits (61), Expect = 8.1
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 8/28 (28%)
Query: 114 GGCALSG-AKKYSTPLYDLKIDSQIYSE 140
G L+ A++Y TPL+ + E
Sbjct: 29 AGIPLTQLAQEYGTPLF-------VIDE 49
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine
biosynthesis, structural genomics, NYSGXRC, PSI; HET:
LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP:
b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Length = 434
Score = 26.7 bits (60), Expect = 9.0
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 8/28 (28%)
Query: 114 GGCALSG-AKKYSTPLYDLKIDSQIYSE 140
G A+K+ TPLY + SE
Sbjct: 17 DGYDAIELAEKFGTPLY-------VMSE 37
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.423
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,481,461
Number of extensions: 263640
Number of successful extensions: 425
Number of sequences better than 10.0: 1
Number of HSP's gapped: 423
Number of HSP's successfully gapped: 13
Length of query: 291
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 198
Effective length of database: 4,105,140
Effective search space: 812817720
Effective search space used: 812817720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.0 bits)