RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5092
         (291 letters)



>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 298

 Score = 29.6 bits (65), Expect = 0.46
 Identities = 25/186 (13%), Positives = 52/186 (27%), Gaps = 13/186 (6%)

Query: 87  AAFAYRQISPASVQRIFILGPSHYYQLGGCALSGAKKYSTPLYDLKIDSQIYSELEATNK 146
           A        P+ V    ++   HY   G       +  +  +   +   Q +    A   
Sbjct: 50  ADLCRWVADPSQVHYW-LITHKHYDHCGLLPYLCPRLPNVQVLASERTCQAWKSESAVRV 108

Query: 147 FETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSLSTGREAEYGRIFAPYLA 206
            E ++  +   E  L     + A  +    +   +       L    EA           
Sbjct: 109 VERLNRQLLRAEQRLPEACAWDALPVRAVADGEWLELGPRHRL-QVIEAHGHSDDHVVFY 167

Query: 207 DPRNLFVISSDFCHWGDRFRFTYYDSAYGEIHQSIEALDRKSPSSSINRVYSILISRGPS 266
           D R   +   D     D     +    + ++   +E+L+R     ++ ++          
Sbjct: 168 DVRRRRLFCGDALGEFDEAEGVWRPLVFDDMEAYLESLERLQRLPTLLQLIP-------- 219

Query: 267 DEEGHG 272
              GHG
Sbjct: 220 ---GHG 222


>d1xe0a_ b.121.3.1 (A:) Nucleophosmin (NO38) {African clawed frog
           (Xenopus laevis) [TaxId: 8355]}
          Length = 108

 Score = 27.8 bits (62), Expect = 0.60
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 140 ELEATNKFETISMDVDEEEHSLEMQIPYIAKVMEDFKNEFTIVPV 184
           EL+A  K  +  ++ DE EH L ++      +    K+E  +V  
Sbjct: 11  ELKADKKEYSFKVEDDENEHQLSLR---TVSLGASAKDELHVVEA 52


>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria
          meningitidis, mc58 [TaxId: 487]}
          Length = 82

 Score = 26.3 bits (58), Expect = 1.6
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 39 NHLRFKCSKQTKELDKQLGNWLNN 62
            +RF+  +   ELD   G ++  
Sbjct: 10 RKIRFQTRRGLLELDLIFGRFMEK 33


>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 242

 Score = 27.1 bits (59), Expect = 2.2
 Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 7/63 (11%)

Query: 158 EHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSLS------TGRE-AEYGRIFAPYLADPRN 210
                + I  IA+       E    P++  SLS       G    +        L+DP  
Sbjct: 180 PEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPEL 239

Query: 211 LFV 213
           L +
Sbjct: 240 LLM 242


>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase
           {Escherichia coli [TaxId: 562]}
          Length = 233

 Score = 26.9 bits (59), Expect = 2.4
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 7/62 (11%)

Query: 159 HSLEMQIPYIAKVMEDFKNEFTIVPVMVGSLS------TGREA-EYGRIFAPYLADPRNL 211
            S  + +  I         +  I+P+M  +LS       GRE+  +       L DP  L
Sbjct: 170 QSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRL 229

Query: 212 FV 213
            +
Sbjct: 230 LL 231


>d1vk6a3 d.113.1.4 (A:0-96) NADH pyrophosphatase {Escherichia coli
           [TaxId: 562]}
          Length = 97

 Score = 25.5 bits (56), Expect = 3.5
 Identities = 13/65 (20%), Positives = 18/65 (27%), Gaps = 5/65 (7%)

Query: 59  WLNNAELSHGPARAIISPHAGYRYCGE-----CAAFAYRQISPASVQRIFILGPSHYYQL 113
           WL   EL +G A             GE           ++       R  I      +QL
Sbjct: 23  WLPKGELPYGEAANFDLVGQRALQIGEWQGEPVWLVQQQRRHDMGSVRQVIDLDVGLFQL 82

Query: 114 GGCAL 118
            G  +
Sbjct: 83  AGRGV 87


>d2it9a1 d.18.1.3 (A:1-122) Hypothetical protein PMN2A_0962
           {Prochlorococcus marinus [TaxId: 1219]}
          Length = 122

 Score = 25.5 bits (56), Expect = 4.3
 Identities = 7/43 (16%), Positives = 20/43 (46%)

Query: 154 VDEEEHSLEMQIPYIAKVMEDFKNEFTIVPVMVGSLSTGREAE 196
           + +E+ +LE++      ++   +  + +  ++  S    R AE
Sbjct: 60  MGDEDITLELERRPWLAILNGDQYGWNLRLILSASGLFNRGAE 102


>d1nrja_ d.110.4.4 (A:) Srx domain of the signal recognition
           particle receptor alpha-subunit {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 155

 Score = 25.7 bits (56), Expect = 4.9
 Identities = 9/36 (25%), Positives = 15/36 (41%)

Query: 235 GEIHQSIEALDRKSPSSSINRVYSILISRGPSDEEG 270
           G++      L +K     IN   S LI+   + +E 
Sbjct: 12  GQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKES 47


>d1fm0e_ d.41.5.1 (E:) Molybdopterin synthase subunit MoaE
          {Escherichia coli [TaxId: 562]}
          Length = 149

 Score = 24.9 bits (54), Expect = 7.6
 Identities = 7/50 (14%), Positives = 13/50 (26%)

Query: 42 RFKCSKQTKELDKQLGNWLNNAELSHGPARAIISPHAGYRYCGECAAFAY 91
                     +K L   ++ A       R  +    G  + G+   F  
Sbjct: 48 ALTLEHYPGMTEKALAEIVDEARNRWPLGRVTVIHRIGELWPGDEIVFVG 97


>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
           {Pyrococcus abyssi [TaxId: 29292]}
          Length = 244

 Score = 25.3 bits (54), Expect = 8.6
 Identities = 10/84 (11%), Positives = 26/84 (30%), Gaps = 6/84 (7%)

Query: 107 PSHYYQLGGCALSGAKKYSTPLYDL--KIDSQIYSELEATNK----FETISMDVDEEEHS 160
           P+ Y  +   AL    +          K+D     E E   K     + ++  +  +   
Sbjct: 139 PNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSM 198

Query: 161 LEMQIPYIAKVMEDFKNEFTIVPV 184
             +    +  +M +      ++ +
Sbjct: 199 QGLMAYKMCSMMTEVLPPVRVLYL 222


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0438    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,115,919
Number of extensions: 51834
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 13
Length of query: 291
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 206
Effective length of database: 1,240,546
Effective search space: 255552476
Effective search space used: 255552476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.5 bits)