BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5093
(662 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 206 bits (524), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 128/342 (37%), Positives = 176/342 (51%), Gaps = 65/342 (19%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LV+ A+ + L T TNYFI SLA AD ++GL V+PF A + +L W FG WC+
Sbjct: 199 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAH-ILTKTWTFGNFWCEF 257
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
W S+DVL TASI LCVI++DRY+AIT P Y S ++ +A + I +VWI SG SF
Sbjct: 258 WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLP 317
Query: 188 IL--WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVV 241
I W+RA E + + C F ++ Y I SS +SFY+PL++MVF Y ++++ A
Sbjct: 318 IQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 377
Query: 242 QTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGIT 301
Q + + D H VE D +GH
Sbjct: 378 QLQKI---------------------------DKSEGRFHVQNLSQVEQDG-RTGHG--- 406
Query: 302 RQVSNTRIIHKGHIVKNFSLSRKLSKFA-KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSA 360
R+ SKF KE KA KTLGI+MG F +CWLPFF+VN++
Sbjct: 407 --------------------LRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHV 446
Query: 361 VCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
+ E + ++ W+G++NSG NP+IY C S DFR
Sbjct: 447 IQDNLIRKE-----VYILLNWIGYVNSGFNPLIY-CRSPDFR 482
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 107/239 (44%), Gaps = 63/239 (26%)
Query: 429 VLISLCYYVTTLVLTAPAIL-WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLP 483
V+I + + V+ L P + W+RA E + + C F ++ Y I SS +SFY+P
Sbjct: 301 VIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVP 360
Query: 484 LLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTP 543
L++MVF Y ++++ A Q + + D H
Sbjct: 361 LVIMVFVYSRVFQEAKRQLQKI---------------------------DKSEGRFHVQN 393
Query: 544 SDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFA-KEKKAAKTLGIVMG 602
VE D +GH R+ SKF KE KA KTLGI+MG
Sbjct: 394 LSQVEQDG-RTGHG-----------------------LRRSSKFCLKEHKALKTLGIIMG 429
Query: 603 VFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 661
F +CWLPFF+VN++ + E + ++ W+G++NSG NP+IY C S DFR
Sbjct: 430 TFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGFNPLIY-CRSPDFR 482
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 128/342 (37%), Positives = 176/342 (51%), Gaps = 65/342 (19%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LV+ A+ + L T TNYFI SLA AD ++GL V+PF A + L+ W FG WC+
Sbjct: 51 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEF 109
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
W S+DVL TASI LCVI++DRY+AIT P Y S ++ +A + I +VWI SG SF
Sbjct: 110 WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLP 169
Query: 188 IL--WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVV 241
I W+RA E + + C F ++ Y I SS +SFY+PL++MVF Y ++++ A
Sbjct: 170 IQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 229
Query: 242 QTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGIT 301
Q + + D H VE D +GH
Sbjct: 230 QLQKI---------------------------DKSEGRFHVQNLSQVEQDG-RTGHG--- 258
Query: 302 RQVSNTRIIHKGHIVKNFSLSRKLSKFA-KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSA 360
R+ SKF KE KA KTLGI+MG F +CWLPFF+VN++
Sbjct: 259 --------------------LRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHV 298
Query: 361 VCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
+ E + ++ W+G++NSG NP+IY C S DFR
Sbjct: 299 IQDNLIRKE-----VYILLNWIGYVNSGFNPLIY-CRSPDFR 334
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 107/239 (44%), Gaps = 63/239 (26%)
Query: 429 VLISLCYYVTTLVLTAPAIL-WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLP 483
V+I + + V+ L P + W+RA E + + C F ++ Y I SS +SFY+P
Sbjct: 153 VIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVP 212
Query: 484 LLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTP 543
L++MVF Y ++++ A Q + + D H
Sbjct: 213 LVIMVFVYSRVFQEAKRQLQKI---------------------------DKSEGRFHVQN 245
Query: 544 SDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFA-KEKKAAKTLGIVMG 602
VE D +GH R+ SKF KE KA KTLGI+MG
Sbjct: 246 LSQVEQDG-RTGHG-----------------------LRRSSKFCLKEHKALKTLGIIMG 281
Query: 603 VFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 661
F +CWLPFF+VN++ + E + ++ W+G++NSG NP+IY C S DFR
Sbjct: 282 TFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGFNPLIY-CRSPDFR 334
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 203 bits (516), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 128/342 (37%), Positives = 176/342 (51%), Gaps = 65/342 (19%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LV+ A+ + L T TNYFI SLA AD ++GL V+PF A + L+ W FG WC+
Sbjct: 27 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEF 85
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
W S+DVL TASI LCVI++DRY+AIT P Y S ++ +A + I +VWI SG SF
Sbjct: 86 WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLP 145
Query: 188 IL--WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVV 241
I W+RA E + + C F ++ Y I SS +SFY+PL++MVF Y ++++ A
Sbjct: 146 IQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 205
Query: 242 QTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGIT 301
Q + + D H VE D +GH
Sbjct: 206 QLQKI---------------------------DKSEGRFHVQNLSQVEQDG-RTGHG--- 234
Query: 302 RQVSNTRIIHKGHIVKNFSLSRKLSKFA-KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSA 360
R+ SKF KE KA KTLGI+MG F +CWLPFF+VN++
Sbjct: 235 --------------------LRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHV 274
Query: 361 VCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
+ E + ++ W+G++NSG NP+IY C S DFR
Sbjct: 275 IQDNLIRKE-----VYILLNWIGYVNSGFNPLIY-CRSPDFR 310
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 107/239 (44%), Gaps = 63/239 (26%)
Query: 429 VLISLCYYVTTLVLTAPAIL-WWRAVRNEEVP----KNKCPFTDSKGYLIFSSTISFYLP 483
V+I + + V+ L P + W+RA E + + C F ++ Y I SS +SFY+P
Sbjct: 129 VIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVP 188
Query: 484 LLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTP 543
L++MVF Y ++++ A Q + + D H
Sbjct: 189 LVIMVFVYSRVFQEAKRQLQKI---------------------------DKSEGRFHVQN 221
Query: 544 SDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFA-KEKKAAKTLGIVMG 602
VE D +GH R+ SKF KE KA KTLGI+MG
Sbjct: 222 LSQVEQDG-RTGHG-----------------------LRRSSKFCLKEHKALKTLGIIMG 257
Query: 603 VFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 661
F +CWLPFF+VN++ + E + ++ W+G++NSG NP+IY C S DFR
Sbjct: 258 TFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGFNPLIY-CRSPDFR 310
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 203 bits (516), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 128/342 (37%), Positives = 176/342 (51%), Gaps = 65/342 (19%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LV+ A+ + L T TNYFI SLA AD ++GL V+PF A + L+ W FG WC+
Sbjct: 50 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEF 108
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
W S+DVL TASI LCVI++DRY+AIT P Y S ++ +A + I +VWI SG SF
Sbjct: 109 WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLP 168
Query: 188 IL--WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVV 241
I W+RA E + + C F ++ Y I SS +SFY+PL++MVF Y ++++ A
Sbjct: 169 IQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 228
Query: 242 QTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGIT 301
Q + + D H VE D +GH
Sbjct: 229 QLQKI---------------------------DKSEGRFHVQNLSQVEQDG-RTGHG--- 257
Query: 302 RQVSNTRIIHKGHIVKNFSLSRKLSKFA-KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSA 360
R+ SKF KE KA KTLGI+MG F +CWLPFF+VN++
Sbjct: 258 --------------------LRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHV 297
Query: 361 VCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
+ E + ++ W+G++NSG NP+IY C S DFR
Sbjct: 298 IQDNLIRKE-----VYILLNWIGYVNSGFNPLIY-CRSPDFR 333
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 107/239 (44%), Gaps = 63/239 (26%)
Query: 429 VLISLCYYVTTLVLTAPAIL-WWRAVRNEEVP----KNKCPFTDSKGYLIFSSTISFYLP 483
V+I + + V+ L P + W+RA E + + C F ++ Y I SS +SFY+P
Sbjct: 152 VIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVP 211
Query: 484 LLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTP 543
L++MVF Y ++++ A Q + + D H
Sbjct: 212 LVIMVFVYSRVFQEAKRQLQKI---------------------------DKSEGRFHVQN 244
Query: 544 SDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFA-KEKKAAKTLGIVMG 602
VE D +GH R+ SKF KE KA KTLGI+MG
Sbjct: 245 LSQVEQDG-RTGHG-----------------------LRRSSKFCLKEHKALKTLGIIMG 280
Query: 603 VFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 661
F +CWLPFF+VN++ + E + ++ W+G++NSG NP+IY C S DFR
Sbjct: 281 TFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGFNPLIY-CRSPDFR 333
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 115/185 (62%), Gaps = 7/185 (3%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LV+ A+ + L T TNYFI SLA AD ++GL V+PF A + +L W FG WC+
Sbjct: 22 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAH-ILTKTWTFGNFWCEF 80
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
W S+DVL TASI LCVI++DRY+AIT P Y S ++ +A + I +VWI SG SF
Sbjct: 81 WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLP 140
Query: 188 IL--WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVV 241
I W+RA E + + C F ++ Y I SS +SFY+PL++MVF Y ++++ A
Sbjct: 141 IQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 200
Query: 242 QTKSL 246
Q + +
Sbjct: 201 QLQKI 205
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 7/81 (8%)
Query: 323 RKLSKFA-KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTW 381
+K+ KF KE KA KTLGI+MG F +CWLPFF+VN++ + E + ++ W
Sbjct: 203 QKIDKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNW 257
Query: 382 LGWINSGMNPVIYACWSRDFR 402
+G++NSG NP+IY C S DFR
Sbjct: 258 IGYVNSGFNPLIY-CRSPDFR 277
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 7/81 (8%)
Query: 582 RKLSKFA-KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTW 640
+K+ KF KE KA KTLGI+MG F +CWLPFF+VN++ + E + ++ W
Sbjct: 203 QKIDKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNW 257
Query: 641 LGWINSGMNPVIYACWSRDFR 661
+G++NSG NP+IY C S DFR
Sbjct: 258 IGYVNSGFNPLIY-CRSPDFR 277
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 449 WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKS 504
W+RA E + + C F ++ Y I SS +SFY+PL++MVF Y ++++ A Q +
Sbjct: 145 WYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQK 204
Query: 505 L 505
+
Sbjct: 205 I 205
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 113/181 (62%), Gaps = 7/181 (3%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LV+ A+ + L T TNYFI SLA AD ++GL V+PF A + L+ W FG WC+
Sbjct: 58 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEF 116
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
W S+DVL TASI LCVI++DRY+AIT P Y S ++ +A + I +VWI SG SF
Sbjct: 117 WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLP 176
Query: 188 IL--WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVV 241
I W+RA E + + C F ++ Y I SS +SFY+PL++MVF Y ++++ A
Sbjct: 177 IQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 236
Query: 242 Q 242
Q
Sbjct: 237 Q 237
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Query: 330 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 389
KE KA KTLGI+MG F +CWLPFF+VN++ + E + ++ W+G++NSG
Sbjct: 403 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGF 457
Query: 390 NPVIYACWSRDFR 402
NP+IY C S DFR
Sbjct: 458 NPLIY-CRSPDFR 469
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Query: 589 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 648
KE KA KTLGI+MG F +CWLPFF+VN++ + E + ++ W+G++NSG
Sbjct: 403 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGF 457
Query: 649 NPVIYACWSRDFR 661
NP+IY C S DFR
Sbjct: 458 NPLIY-CRSPDFR 469
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 429 VLISLCYYVTTLVLTAPAIL-WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLP 483
V+I + + V+ L P + W+RA E + + C F ++ Y I SS +SFY+P
Sbjct: 160 VIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVP 219
Query: 484 LLVMVFTYFKIYRAAVVQ 501
L++MVF Y ++++ A Q
Sbjct: 220 LVIMVFVYSRVFQEAKRQ 237
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 113/181 (62%), Gaps = 7/181 (3%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LV+ A+ + L T TNYFI SLA AD ++GL V+PF A + L+ W FG WC+
Sbjct: 57 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEF 115
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
W S+DVL TASI LCVI++DRY+AIT P Y S ++ +A + I +VWI SG SF
Sbjct: 116 WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLP 175
Query: 188 IL--WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVV 241
I W+RA E + + C F ++ Y I SS +SFY+PL++MVF Y ++++ A
Sbjct: 176 IQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 235
Query: 242 Q 242
Q
Sbjct: 236 Q 236
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Query: 330 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 389
KE KA KTLGI+MG F +CWLPFF+VN++ + E + ++ W+G++NSG
Sbjct: 402 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGF 456
Query: 390 NPVIYACWSRDFR 402
NP+IY C S DFR
Sbjct: 457 NPLIY-CRSPDFR 468
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Query: 589 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 648
KE KA KTLGI+MG F +CWLPFF+VN++ + E + ++ W+G++NSG
Sbjct: 402 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGF 456
Query: 649 NPVIYACWSRDFR 661
NP+IY C S DFR
Sbjct: 457 NPLIY-CRSPDFR 468
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 429 VLISLCYYVTTLVLTAPAIL-WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLP 483
V+I + + V+ L P + W+RA E + + C F ++ Y I SS +SFY+P
Sbjct: 159 VIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVP 218
Query: 484 LLVMVFTYFKIYRAAVVQ 501
L++MVF Y ++++ A Q
Sbjct: 219 LVIMVFVYSRVFQEAKRQ 236
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 113/181 (62%), Gaps = 7/181 (3%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LV+ A+ + L T TNYFI SLA AD ++GL V+PF A + L+ W FG WC+
Sbjct: 58 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEF 116
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
W S+DVL TASI LCVI++DRY+AIT P Y S ++ +A + I +VWI SG SF
Sbjct: 117 WTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLP 176
Query: 188 IL--WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVV 241
I W+RA E + + C F ++ Y I SS +SFY+PL++MVF Y ++++ A
Sbjct: 177 IQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 236
Query: 242 Q 242
Q
Sbjct: 237 Q 237
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Query: 330 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 389
KE KA KTLGI+MG F +CWLPFF+VN++ + E + ++ W+G++NSG
Sbjct: 403 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGF 457
Query: 390 NPVIYACWSRDFR 402
NP+IY C S DFR
Sbjct: 458 NPLIY-CRSPDFR 469
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Query: 589 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 648
KE KA KTLGI+MG F +CWLPFF+VN++ + E + ++ W+G++NSG
Sbjct: 403 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGF 457
Query: 649 NPVIYACWSRDFR 661
NP+IY C S DFR
Sbjct: 458 NPLIY-CRSPDFR 469
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 429 VLISLCYYVTTLVLTAPAIL-WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLP 483
V+I + + V+ L P + W+RA E + + C F ++ Y I SS +SFY+P
Sbjct: 160 VIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVP 219
Query: 484 LLVMVFTYFKIYRAAVVQ 501
L++MVF Y ++++ A Q
Sbjct: 220 LVIMVFVYSRVFQEAKRQ 237
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 112/181 (61%), Gaps = 7/181 (3%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LV+ A+ + L T TNYFI SLA AD ++GL V+PF A L+ W FG WC+
Sbjct: 26 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILMKM-WTFGNFWCEF 84
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
W S+DVL TASI LCVI++DRY+AIT P Y S ++ +A + I +VWI SG SF
Sbjct: 85 WTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLP 144
Query: 188 IL--WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVV 241
I W+RA E + + C F ++ Y I SS +SFY+PL++MVF Y ++++ A
Sbjct: 145 IQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKR 204
Query: 242 Q 242
Q
Sbjct: 205 Q 205
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Query: 330 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 389
KE KA KTLGI+MG F +CWLPFF+VN++ + E + ++ W+G++NSG
Sbjct: 371 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGF 425
Query: 390 NPVIYACWSRDFR 402
NP+IY C S DFR
Sbjct: 426 NPLIY-CRSPDFR 437
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Query: 589 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 648
KE KA KTLGI+MG F +CWLPFF+VN++ + E + ++ W+G++NSG
Sbjct: 371 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGF 425
Query: 649 NPVIYACWSRDFR 661
NP+IY C S DFR
Sbjct: 426 NPLIY-CRSPDFR 437
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 429 VLISLCYYVTTLVLTAPAIL-WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFYLP 483
V+I + + V+ L P + W+RA E + + C F ++ Y I SS +SFY+P
Sbjct: 128 VIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVP 187
Query: 484 LLVMVFTYFKIYRAAVVQ 501
L++MVF Y ++++ A Q
Sbjct: 188 LVIMVFVYSRVFQEAKRQ 205
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 115/192 (59%), Gaps = 9/192 (4%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LV+ A+ + L T TN FI SLA AD +VGL+V+PF A ++ W++G C+
Sbjct: 28 GNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATL-VVRGTWLWGSFLCEL 86
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
W SLDVL TASI LCVI++DRY AIT P Y S M+ RA + I VW S +SF
Sbjct: 87 WTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLP 146
Query: 188 IL--WWR-----AVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAV 240
I+ WWR A++ + P C F ++ Y I SS ISFY+PLL+M+F ++YR A
Sbjct: 147 IMMHWWRDEDPQALKCYQDP-GCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAK 205
Query: 241 VQTKSLKVGTKQ 252
Q + + +K+
Sbjct: 206 EQIRKIDRASKR 217
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
Query: 323 RKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWL 382
RK +E KA KTLGI+MGVF +CWLPFF+VN+++ F + + + WL
Sbjct: 217 RKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNV-----FNRDLVPDWLFVAFNWL 271
Query: 383 GWINSGMNPVIYACWSRDFRSKEKIL 408
G+ NS MNP+IY C S DFR K L
Sbjct: 272 GYANSAMNPIIY-CRSPDFRKAFKRL 296
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 6/81 (7%)
Query: 582 RKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWL 641
RK +E KA KTLGI+MGVF +CWLPFF+VN+++ F + + + WL
Sbjct: 217 RKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNV-----FNRDLVPDWLFVAFNWL 271
Query: 642 GWINSGMNPVIYACWSRDFRR 662
G+ NS MNP+IY C S DFR+
Sbjct: 272 GYANSAMNPIIY-CRSPDFRK 291
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 429 VLISLCYYVTTLVLTAPAIL-WWR-----AVRNEEVPKNKCPFTDSKGYLIFSSTISFYL 482
V+I + ++ LV P ++ WWR A++ + P C F ++ Y I SS ISFY+
Sbjct: 130 VIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDP-GCCDFVTNRAYAIASSIISFYI 188
Query: 483 PLLVMVFTYFKIYRAAVVQTKSLKVGTKQ 511
PLL+M+F ++YR A Q + + +K+
Sbjct: 189 PLLIMIFVALRVYREAKEQIRKIDRASKR 217
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 115/192 (59%), Gaps = 9/192 (4%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LV+ A+ + L T TN FI SLA AD +VGL+V+PF A ++ W++G C+
Sbjct: 28 GNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATL-VVRGTWLWGSFLCEL 86
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
W SLDVL TASI LCVI++DRY AIT P Y S M+ RA + I VW S +SF
Sbjct: 87 WTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLP 146
Query: 188 IL--WWR-----AVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAV 240
I+ WWR A++ + P C F ++ Y I SS ISFY+PLL+M+F ++YR A
Sbjct: 147 IMMHWWRDEDPQALKCYQDP-GCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAK 205
Query: 241 VQTKSLKVGTKQ 252
Q + + +K+
Sbjct: 206 EQIRKIDRASKR 217
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 53/83 (63%), Gaps = 8/83 (9%)
Query: 582 RKLSK--FAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVT 639
RK S+ +E KA KTLGI+MGVF +CWLPFF+VN+++ F + + +
Sbjct: 217 RKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNV-----FNRDLVPDWLFVAFN 271
Query: 640 WLGWINSGMNPVIYACWSRDFRR 662
WLG+ NS MNP+IY C S DFR+
Sbjct: 272 WLGYANSAMNPIIY-CRSPDFRK 293
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 54/88 (61%), Gaps = 8/88 (9%)
Query: 323 RKLSK--FAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVT 380
RK S+ +E KA KTLGI+MGVF +CWLPFF+VN+++ F + + +
Sbjct: 217 RKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNV-----FNRDLVPDWLFVAFN 271
Query: 381 WLGWINSGMNPVIYACWSRDFRSKEKIL 408
WLG+ NS MNP+IY C S DFR K L
Sbjct: 272 WLGYANSAMNPIIY-CRSPDFRKAFKRL 298
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 429 VLISLCYYVTTLVLTAPAIL-WWR-----AVRNEEVPKNKCPFTDSKGYLIFSSTISFYL 482
V+I + ++ LV P ++ WWR A++ + P C F ++ Y I SS ISFY+
Sbjct: 130 VIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDP-GCCDFVTNRAYAIASSIISFYI 188
Query: 483 PLLVMVFTYFKIYRAAVVQTKSLKVGTKQ 511
PLL+M+F ++YR A Q + + +K+
Sbjct: 189 PLLIMIFVALRVYREAKEQIRKIDRASKR 217
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 103/175 (58%), Gaps = 4/175 (2%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LVM+++ R+L T NYF+ SLA AD ++G+ M LY ++ + W G CD
Sbjct: 40 GNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGY-WPLGPVVCDL 98
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
W +LD + S AS++NL +IS DRY+ +T PLTYP + +T+ A + IA W+ S + PA
Sbjct: 99 WLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPA 158
Query: 188 ILWWR---AVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAA 239
IL+W+ VR E + F + ++ +FYLP+++M Y+ I RA+
Sbjct: 159 ILFWQFIVGVRTVEDGECYIQFFSNAAVTFGTAIAAFYLPVIIMTVLYWHISRAS 213
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 588 AKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSG 647
++EKK +T+ ++ FI+ W P+ V+ L++ C C + + WL +INS
Sbjct: 381 SREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCI-----PNTVWTIGYWLCYINST 435
Query: 648 MNPVIYACWSRDFRR 662
+NP YA + F++
Sbjct: 436 INPACYALCNATFKK 450
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 329 AKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSG 388
++EKK +T+ ++ FI+ W P+ V+ L++ C C + + WL +INS
Sbjct: 381 SREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCI-----PNTVWTIGYWLCYINST 435
Query: 389 MNPVIYACWSRDFRSKEK 406
+NP YA + F+ K
Sbjct: 436 INPACYALCNATFKKTFK 453
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 436 YVTTLVLTAPAILWWR---AVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYF 492
+V + +L APAIL+W+ VR E + F + ++ +FYLP+++M Y+
Sbjct: 148 WVLSFILWAPAILFWQFIVGVRTVEDGECYIQFFSNAAVTFGTAIAAFYLPVIIMTVLYW 207
Query: 493 KIYRAA 498
I RA+
Sbjct: 208 HISRAS 213
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 100/172 (58%), Gaps = 8/172 (4%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LV +AV++ER L T+TNY ++SLA+AD LV +VMP+ E+ W F CD
Sbjct: 55 GNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDV 114
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYP---SRMSTRRAYIWIAIVWICSGGIS 184
+ +LDV+ TASI NLC IS+DRY A+ P+ Y + S RR + I VW+ + +S
Sbjct: 115 FVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVS 174
Query: 185 FPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIY 236
P + + + V C ++ ++I+SS +SFYLP V V Y +IY
Sbjct: 175 CPLLFGFNTTGDPTV----CSISNPD-FVIYSSVVSFYLPFGVTVLVYARIY 221
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 52/74 (70%), Gaps = 4/74 (5%)
Query: 589 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 648
+EKKA + + IV+G FIVCWLPFF+ ++L+ C C S EL SA TWLG++NS +
Sbjct: 395 REKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVS---PELYSA-TTWLGYVNSAL 450
Query: 649 NPVIYACWSRDFRR 662
NPVIY ++ +FR+
Sbjct: 451 NPVIYTTFNIEFRK 464
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 330 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 389
+EKKA + + IV+G FIVCWLPFF+ ++L+ C C S EL SA TWLG++NS +
Sbjct: 395 REKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVS---PELYSA-TTWLGYVNSAL 450
Query: 390 NPVIYACWSRDFR 402
NPVIY ++ +FR
Sbjct: 451 NPVIYTTFNIEFR 463
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 471 YLIFSSTISFYLPLLVMVFTYFKIY 495
++I+SS +SFYLP V V Y +IY
Sbjct: 197 FVIYSSVVSFYLPFGVTVLVYARIY 221
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LV++A + L T NYF++SLA AD ++G++ M Y +++ W G CD
Sbjct: 29 GNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNR-WALGNLACDL 87
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
W S+D + S AS++NL VIS DRY++IT PLTY ++ +T+RA + I + W+ S + PA
Sbjct: 88 WLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISFVLWAPA 147
Query: 188 ILWWRA-VRNEEVPKNKC--PFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYR 237
IL+W+ V VP +C F ++ +FY+P+ +M Y++IY+
Sbjct: 148 ILFWQYFVGKRTVPPGECFIQFLSEPTITFGTAIAAFYMPVTIMTILYWRIYK 200
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 13/83 (15%)
Query: 330 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKC----FWSEQDEELISAVVTWLGWI 385
KEKKAA+TL ++ FI+ W P+ ++ L++ C C +W+ + WL +I
Sbjct: 368 KEKKAAQTLSAILLAFIITWTPYNIMVLVNTFCDSCIPKTYWN---------LGYWLCYI 418
Query: 386 NSGMNPVIYACWSRDFRSKEKIL 408
NS +NPV YA ++ FR+ K L
Sbjct: 419 NSTVNPVCYALCNKTFRTTFKTL 441
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 13/77 (16%)
Query: 589 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKC----FWSEQDEELISAVVTWLGWI 644
KEKKAA+TL ++ FI+ W P+ ++ L++ C C +W+ + WL +I
Sbjct: 368 KEKKAAQTLSAILLAFIITWTPYNIMVLVNTFCDSCIPKTYWN---------LGYWLCYI 418
Query: 645 NSGMNPVIYACWSRDFR 661
NS +NPV YA ++ FR
Sbjct: 419 NSTVNPVCYALCNKTFR 435
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 429 VLISLCYYVTTLVLTAPAILWWRA-VRNEEVPKNKC--PFTDSKGYLIFSSTISFYLPLL 485
V+I L + V + VL APAIL+W+ V VP +C F ++ +FY+P+
Sbjct: 131 VMIGLAW-VISFVLWAPAILFWQYFVGKRTVPPGECFIQFLSEPTITFGTAIAAFYMPVT 189
Query: 486 VMVFTYFKIYR 496
+M Y++IY+
Sbjct: 190 IMTILYWRIYK 200
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 166/384 (43%), Gaps = 61/384 (15%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LV AV L TNYF++SLA AD VG++ +PF+ + + + C
Sbjct: 48 GNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT---ISTGFCAACHGCLF 104
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
++ + +SI +L I++DRY AI PL Y ++ RA IAI W+ S I
Sbjct: 105 IACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTP 164
Query: 188 ILWWRAVRNEEVPKN----------KCPFTD--SKGYLIFSSTISFYL-PLLVMVFTYFK 234
+L W + KN C F D Y+++ + + L PLL+M+ Y +
Sbjct: 165 MLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLR 224
Query: 235 IYRAAVVQT-------KSLKVGTKQVMSGSTSGE-KELTLRIHRGGTDHRHMT---LHHT 283
I+ AA Q ++L K + + + K+ ++ D + T L
Sbjct: 225 IFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDK 284
Query: 284 PSDDVEMDNVMSGHNGITRQVSNT-RIIHKGHIVKNFS----------------LSRKLS 326
D EM + G + + Q+ + ++ ++G + + + L R S
Sbjct: 285 SPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARS 344
Query: 327 KFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWI- 385
KE AAK+L I++G+F +CWLP ++N + C C S WL ++
Sbjct: 345 TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC----------SHAPLWLMYLA 394
Query: 386 ------NSGMNPVIYACWSRDFRS 403
NS +NP IYA R+FR
Sbjct: 395 IVLSHTNSVVNPFIYAYRIREFRQ 418
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 117/281 (41%), Gaps = 59/281 (20%)
Query: 430 LISLCYYVTTLVLTAPAILWWRAVRNEEVPKN----------KCPFTD--SKGYLIFSST 477
+I++C+ ++ + P +L W + KN C F D Y+++ +
Sbjct: 149 IIAICWVLSFAIGLTP-MLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNF 207
Query: 478 ISFYL-PLLVMVFTYFKIYRAAVVQT-------KSLKVGTKQVMSGSTSGE-KELTLRIH 528
+ L PLL+M+ Y +I+ AA Q ++L K + + + K+ ++
Sbjct: 208 FACVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTKMR 267
Query: 529 RGGTDHRHMT---LHHTPSDDVEMDNVMSGHNGITRQVSNT-RIIHKGHIVKNFS----- 579
D + T L D EM + G + + Q+ + ++ ++G + + +
Sbjct: 268 AAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQL 327
Query: 580 -----------LSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSE 628
L R S KE AAK+L I++G+F +CWLP ++N + C C
Sbjct: 328 KTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC---- 383
Query: 629 QDEELISAVVTWLGWI-------NSGMNPVIYACWSRDFRR 662
S WL ++ NS +NP IYA R+FR+
Sbjct: 384 ------SHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQ 418
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 98/173 (56%), Gaps = 4/173 (2%)
Query: 69 NALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSW 128
N LV+ AV ER LHT N +I+SL++AD +VG VVMP + LY LL W G C W
Sbjct: 26 NLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILY-LLMSKWSLGRPLCLFW 84
Query: 129 RSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAI 188
S+D + STASI ++ ++ +DRY ++ PL Y + RA I W S P +
Sbjct: 85 LSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIPIL 144
Query: 189 LWWRAVRNEEVPK-NKCP--FTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRA 238
W ++ V + +KC F D + + ++ I+FYLP L+M++ Y KIY+A
Sbjct: 145 GWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKA 197
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 330 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 389
+E+KAAK LG +M FI+CW+P+F+ ++ A C C E + WLG+INS +
Sbjct: 367 RERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCC-----NEHLHMFTIWLGYINSTL 421
Query: 390 NPVIYACWSRDFRSKEKILNH 410
NP+IY + +F+ K + H
Sbjct: 422 NPLIYPLCNENFKKTFKRILH 442
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
Query: 589 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 648
+E+KAAK LG +M FI+CW+P+F+ ++ A C C E + WLG+INS +
Sbjct: 367 RERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCC-----NEHLHMFTIWLGYINSTL 421
Query: 649 NPVIYACWSRDFRR 662
NP+IY + +F++
Sbjct: 422 NPLIYPLCNENFKK 435
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 452 AVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRA 497
+VR E+ K + F D + + ++ I+FYLP L+M++ Y KIY+A
Sbjct: 154 SVRRED--KCETDFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKA 197
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 134/337 (39%), Gaps = 63/337 (18%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LV AV L TNYF++S A AD LVG++ +PF+ + + + C
Sbjct: 23 GNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIA---ISTGFCAACHGCLF 79
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
++ + +SI +L I++DRY AI PL Y ++ RA IAI W+ S I
Sbjct: 80 IACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTP 139
Query: 188 ILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLK 247
+L W N PK + G + +P+ MV YF + A V+ L
Sbjct: 140 MLGWN---NCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMV--YFNFF-ACVLVPLLLM 193
Query: 248 VGTKQVMSGSTSGEKELTLRIHRGGTDH-RHMTLHHTPSDDVEMDNVMSGHNGITRQVSN 306
+G + LRI + M P +
Sbjct: 194 LG--------------VYLRIFLAARRQLKQMESQPLPGE-------------------- 219
Query: 307 TRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCF 366
R S KE AAK+L I++G+F +CWLP ++N + C C
Sbjct: 220 ----------------RARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC- 262
Query: 367 WSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRS 403
S L+ + L NS +NP IYA R+FR
Sbjct: 263 -SHAPLWLMYLAIV-LSHTNSVVNPFIYAYRIREFRQ 297
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 581 SRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTW 640
R S KE AAK+L I++G+F +CWLP ++N + C C S L+ +
Sbjct: 219 ERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC--SHAPLWLMYLAIV- 275
Query: 641 LGWINSGMNPVIYACWSRDFRR 662
L NS +NP IYA R+FR+
Sbjct: 276 LSHTNSVVNPFIYAYRIREFRQ 297
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 134/337 (39%), Gaps = 63/337 (18%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LV AV L TNYF++SLA AD VG++ +PF+ + + + C
Sbjct: 23 GNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT---ISTGFCAACHGCLF 79
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
++ + +SI +L I++DRY AI PL Y ++ RA IAI W+ S I
Sbjct: 80 IACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTP 139
Query: 188 ILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLK 247
+L W N PK + G + +P+ MV YF + A V+ L
Sbjct: 140 MLGWN---NCGQPKEGKQHSQGCGEGQVACLFEDVVPMNYMV--YFNFF-ACVLVPLLLM 193
Query: 248 VGTKQVMSGSTSGEKELTLRIHRGGTDH-RHMTLHHTPSDDVEMDNVMSGHNGITRQVSN 306
+G + LRI + M P +
Sbjct: 194 LG--------------VYLRIFLAARRQLKQMESQPLPGE-------------------- 219
Query: 307 TRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCF 366
R S KE AAK+L I++G+F +CWLP ++N + C C
Sbjct: 220 ----------------RARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC- 262
Query: 367 WSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRS 403
S L+ + L NS +NP IYA R+FR
Sbjct: 263 -SHAPLWLMYLAIV-LSHTNSVVNPFIYAYRIREFRQ 297
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 581 SRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTW 640
R S KE AAK+L I++G+F +CWLP ++N + C C S L+ +
Sbjct: 219 ERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC--SHAPLWLMYLAIV- 275
Query: 641 LGWINSGMNPVIYACWSRDFRR 662
L NS +NP IYA R+FR+
Sbjct: 276 LSHTNSVVNPFIYAYRIREFRQ 297
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 133/337 (39%), Gaps = 63/337 (18%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LV AV L TNYF++SLA AD LVG++ +PF+ + + + C
Sbjct: 23 GNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFAIT---ISTGFCAACHGCLF 79
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
++ + +SI +L I++DRY AI PL Y ++ RA IAI W+ S I
Sbjct: 80 IACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSFAIGLTP 139
Query: 188 ILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLK 247
+L W N PK + G + +P+ MV YF + A V+ L
Sbjct: 140 MLGWN---NCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMV--YFNFF-ACVLVPLLLM 193
Query: 248 VGTKQVMSGSTSGEKELTLRIHRGGTDH-RHMTLHHTPSDDVEMDNVMSGHNGITRQVSN 306
+G + LRI + M P +
Sbjct: 194 LG--------------VYLRIFAAARRQLKQMESQPLPGE-------------------- 219
Query: 307 TRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCF 366
R S KE AAK+ I+ G+F +CWLP ++N + C C
Sbjct: 220 ----------------RARSTLQKEVHAAKSAAIIAGLFALCWLPLHIINCFTFFCPDC- 262
Query: 367 WSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRS 403
S L+ + L NS +NP IYA R+FR
Sbjct: 263 -SHAPLWLMYLAIV-LAHTNSVVNPFIYAYRIREFRQ 297
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 581 SRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTW 640
R S KE AAK+ I+ G+F +CWLP ++N + C C S L+ +
Sbjct: 219 ERARSTLQKEVHAAKSAAIIAGLFALCWLPLHIINCFTFFCPDC--SHAPLWLMYLAIV- 275
Query: 641 LGWINSGMNPVIYACWSRDFRR 662
L NS +NP IYA R+FR+
Sbjct: 276 LAHTNSVVNPFIYAYRIREFRQ 297
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 16/188 (8%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LV AV L TNYF++SLA AD VG++ +PF+ + + + C
Sbjct: 38 GNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT---ISTGFCAACHGCLF 94
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
++ + +SI +L I++DRY AI PL Y ++ RA IAI W+ S I
Sbjct: 95 IACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTP 154
Query: 188 ILWWRAVRNEEVPKN----------KCPFTD--SKGYLIFSSTISFYL-PLLVMVFTYFK 234
+L W + KN C F D Y+++ + + L PLL+M+ Y +
Sbjct: 155 MLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLR 214
Query: 235 IYRAAVVQ 242
I+ AA Q
Sbjct: 215 IFLAARRQ 222
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 585 SKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWI 644
S KE AAK+L I++G+F +CWLP ++N + C C S L+ + L
Sbjct: 385 STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC--SHAPLWLMYLAIV-LSHT 441
Query: 645 NSGMNPVIYACWSRDFRR 662
NS +NP IYA R+FR+
Sbjct: 442 NSVVNPFIYAYRIREFRQ 459
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 326 SKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWI 385
S KE AAK+L I++G+F +CWLP ++N + C C S L+ + L
Sbjct: 385 STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC--SHAPLWLMYLAIV-LSHT 441
Query: 386 NSGMNPVIYACWSRDFRS 403
NS +NP IYA R+FR
Sbjct: 442 NSVVNPFIYAYRIREFRQ 459
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 91/201 (45%), Gaps = 14/201 (6%)
Query: 78 RERYLHTSTNYFIMSLALADCLVGLV-VMPFSALYELLDHNWIFGLNWCDSWRSLDVLFS 136
+ + L T N FI++LA +D LV P + L WIFG C + + +F
Sbjct: 60 KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLK-KWIFGFAACKVYGFIGGIFG 118
Query: 137 TASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRN 196
SI+ + +IS+DRY I P+ +MS RRA+I I VW+ S + I W A
Sbjct: 119 FMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTL 178
Query: 197 EEVPKNKCPF------TDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSL---- 246
E V N C F + ++ ++ + F+ P+L++ F YF I + K +
Sbjct: 179 EGVLCN-CSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMA 237
Query: 247 -KVGTKQVMSGSTSGEKELTL 266
++ K++ E+ L
Sbjct: 238 KRLNAKELRKAQAGANAEMRL 258
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 91/201 (45%), Gaps = 14/201 (6%)
Query: 78 RERYLHTSTNYFIMSLALADCLVGLV-VMPFSALYELLDHNWIFGLNWCDSWRSLDVLFS 136
+ + L T N FI++LA +D LV P + L WIFG C + + +F
Sbjct: 61 KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLK-KWIFGFAACKVYGFIGGIFG 119
Query: 137 TASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRN 196
SI+ + +IS+DRY I P+ +MS RRA+I I VW+ S + I W A
Sbjct: 120 FMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTL 179
Query: 197 EEVPKNKCPF------TDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSL---- 246
E V N C F + ++ ++ + F+ P+L++ F YF I + K +
Sbjct: 180 EGVLCN-CSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMA 238
Query: 247 -KVGTKQVMSGSTSGEKELTL 266
++ K++ E+ L
Sbjct: 239 KRLNAKELRKAQAGANAEMRL 259
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 7/219 (3%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN+LVM ++R + T+TN +I +LALAD LV MPF + L+ ++W FG C
Sbjct: 39 GNSLVMFVIIRYTKMKTATNIYIFNLALADALVT-TTMPFQSTVYLM-NSWPFGDVLCKI 96
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
S+D SI L ++S+DRY A+ P+ + +A I +W+ S + A
Sbjct: 97 VLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLSSSVGISA 156
Query: 188 ILWWRAVRNEEVPKNKC----PFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQT 243
I+ E+V +C P D + +F F ++ V Y +++
Sbjct: 157 IVLGGTKVREDVDVIECSLQFPDDDYSWWDLFMKICVFIFAFVIPVLIIIVCYTLMILRL 216
Query: 244 KSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHH 282
KS+++ + + E L L+I++ + + + H
Sbjct: 217 KSVRLLSGNIFEMLRIDEG-LRLKIYKDTEGYYTIGIGH 254
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 607 CWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR 662
CW P + L+ A+ + + + LG+ NS +NP++YA +F+R
Sbjct: 408 CWTPIHIFILVEALGSTSHSTAALSSYYFCIA--LGYTNSSLNPILYAFLDENFKR 461
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LVM +VR + T+TN +I +LALAD L +PF ++ L+ W FG C
Sbjct: 34 GNFLVMYVIVRYTKMKTATNIYIFNLALADAL-ATSTLPFQSVNYLMG-TWPFGNILCKI 91
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
S+D SI LC +S+DRY A+ P+ + R A I WI S I P
Sbjct: 92 VISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPV 151
Query: 188 IL 189
+
Sbjct: 152 MF 153
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 606 VCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTW-----LGWINSGMNPVIYACWSRDF 660
VCW P + ++ A+ T E V+W LG+ NS +NPV+YA +F
Sbjct: 394 VCWTPIHIYVIIKALITI-------PETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENF 446
Query: 661 RR 662
+R
Sbjct: 447 KR 448
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 12/61 (19%)
Query: 347 VCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTW-----LGWINSGMNPVIYACWSRDF 401
VCW P + ++ A+ T E V+W LG+ NS +NPV+YA +F
Sbjct: 394 VCWTPIHIYVIIKALITI-------PETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENF 446
Query: 402 R 402
+
Sbjct: 447 K 447
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 102/212 (48%), Gaps = 25/212 (11%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LVM ++R + T+TN +I +LALAD LV L+ +PF LL W FG C +
Sbjct: 142 GNCLVMYVILRHTKMKTATNIYIFNLALADTLV-LLTLPFQGTDILLGF-WPFGNALCKT 199
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPL-TYPSRMSTRRAYIWIAIVWICSGGISFP 186
++D S L +S+DRY AI P+ R S++ + +AI W + + P
Sbjct: 200 VIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAI-WALASVVGVP 258
Query: 187 -AILWWRAVRNEEVPKNKC----PFTDSKGYLIFSSTI---SFYLPLLVMVFTYFKIYRA 238
AI+ V +EE+ +C P +F+ I SF +P+LV+ Y + R
Sbjct: 259 VAIMGSAQVEDEEI---ECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIR- 314
Query: 239 AVVQTKSLKVGTKQVMSGSTSGEKELTLRIHR 270
++ +++SGS ++ L RI R
Sbjct: 315 --------RLRGVRLLSGSREKDRNLR-RITR 337
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 348 CWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRS 403
CW P V L + + S + I T LG++NS +NP++YA +F++
Sbjct: 349 CWTPVQVFVLAQGLGVQ--PSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKA 402
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 607 CWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 661
CW P V L + + S + I T LG++NS +NP++YA +F+
Sbjct: 349 CWTPVQVFVLAQGLGVQ--PSSETAVAILRFCTALGYVNSCLNPILYAFLDENFK 401
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LVM +VR L T+TN +I +LALAD L +PF + L++ W FG C +
Sbjct: 31 GNVLVMFGIVRYTKLKTATNIYIFNLALADAL-ATSTLPFQSAKYLME-TWPFGELLCKA 88
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFP 186
S+D SI L ++S+DRY A+ P+ + +A + +W+ + G+ P
Sbjct: 89 VLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVP 147
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 607 CWLPFFVVNLLSAVCTKCFWSEQDEELISAV--VTWLGWINSGMNPVIYACWSRDFRR 662
CW P +++ V T + +D +++A+ LG+ NS +NPV+YA +F+R
Sbjct: 392 CWAP---IHIFVIVWTLVDINRRDPLVVAALHLCIALGYANSSLNPVLYAFLDENFKR 446
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 348 CWLPFFVVNLLSAVCTKCFWSEQDEELISAV--VTWLGWINSGMNPVIYACWSRDFR 402
CW P +++ V T + +D +++A+ LG+ NS +NPV+YA +F+
Sbjct: 392 CWAP---IHIFVIVWTLVDINRRDPLVVAALHLCIALGYANSSLNPVLYAFLDENFK 445
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 26/210 (12%)
Query: 69 NALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPF-SALYELLDHNWIFGLNWCDS 127
N L + V+ + L T NY +++LA+AD +V F + LY L ++FG C+
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLF--MVFGGFTTTLYTSLHGYFVFGPTGCNL 113
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
L ++ +L V++++RY + P++ R A + +A W+ + + P
Sbjct: 114 QGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGVAFTWVMALACAAPP 172
Query: 188 ILWWRAVRNEEVPKNKCPF--------TDSKGYLIFSSTISFYLPLLVMVFTY----FKI 235
++ W E + + C T+++ ++I+ + F +PL+V+ F Y F +
Sbjct: 173 LVGWSRYIPEGM-QCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV 231
Query: 236 YRAAVVQTKSLKVGTKQVMSGSTSGEKELT 265
AA Q +S + + EKE+T
Sbjct: 232 KEAAAQQQES---------ATTQKAEKEVT 252
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 26/210 (12%)
Query: 69 NALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPF-SALYELLDHNWIFGLNWCDS 127
N L + V+ + L T NY +++LA+AD +V F + LY L ++FG C+
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLF--MVFGGFTTTLYTSLHGYFVFGPTGCNL 113
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
L ++ +L V++++RY + P++ R A + +A W+ + + P
Sbjct: 114 EGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGVAFTWVMALACAAPP 172
Query: 188 ILWWRAVRNEEVPKNKCPF--------TDSKGYLIFSSTISFYLPLLVMVFTY----FKI 235
++ W E + + C T+++ ++I+ + F +PL+V+ F Y F +
Sbjct: 173 LVGWSRYIPEGM-QCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV 231
Query: 236 YRAAVVQTKSLKVGTKQVMSGSTSGEKELT 265
AA Q +S + + EKE+T
Sbjct: 232 KEAAAQQQES---------ATTQKAEKEVT 252
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 331 EKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDE--ELISAVVTWLGWINSG 388
EK+ + + I++ F++CWLP+ + V F + + + + + ++
Sbjct: 248 EKEVTRMVIIMVIAFLICWLPY------AGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV 301
Query: 389 MNPVIYACWSRDFRS 403
NPVIY ++ FR+
Sbjct: 302 YNPVIYIMMNKQFRN 316
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 590 EKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDE--ELISAVVTWLGWINSG 647
EK+ + + I++ F++CWLP+ + V F + + + + + ++
Sbjct: 248 EKEVTRMVIIMVIAFLICWLPY------AGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV 301
Query: 648 MNPVIYACWSRDFRR 662
NPVIY ++ FR
Sbjct: 302 YNPVIYIMMNKQFRN 316
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 26/210 (12%)
Query: 69 NALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPF-SALYELLDHNWIFGLNWCDS 127
N L + V+ + L T NY +++LA+AD +V F + LY L ++FG C+
Sbjct: 55 NFLTLYVTVQHKKLRTPLNYILLNLAVADLF--MVFGGFTTTLYTSLHGYFVFGPTGCNL 112
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
L ++ +L V++++RY + P++ R A + +A W+ + + P
Sbjct: 113 EGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGVAFTWVMALACAAPP 171
Query: 188 ILWWRAVRNEEVPKNKCPF--------TDSKGYLIFSSTISFYLPLLVMVFTY----FKI 235
++ W E + + C T+++ ++I+ + F +PL+V+ F Y F +
Sbjct: 172 LVGWSRYIPEGM-QCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV 230
Query: 236 YRAAVVQTKSLKVGTKQVMSGSTSGEKELT 265
AA Q +S + + EKE+T
Sbjct: 231 KEAAAQQQES---------ATTQKAEKEVT 251
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 331 EKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDE--ELISAVVTWLGWINSG 388
EK+ + + I++ F++CWLP+ + V F + + + + + ++
Sbjct: 247 EKEVTRMVIIMVIAFLICWLPY------AGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV 300
Query: 389 MNPVIYACWSRDFRS 403
NPVIY ++ FR+
Sbjct: 301 YNPVIYIMMNKQFRN 315
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 590 EKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDE--ELISAVVTWLGWINSG 647
EK+ + + I++ F++CWLP+ + V F + + + + + ++
Sbjct: 247 EKEVTRMVIIMVIAFLICWLPY------AGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV 300
Query: 648 MNPVIYACWSRDFRR 662
NPVIY ++ FR
Sbjct: 301 YNPVIYIMMNKQFRN 315
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 26/210 (12%)
Query: 69 NALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPF-SALYELLDHNWIFGLNWCDS 127
N L + V+ + L T NY +++LA+AD +V F + LY L ++FG C+
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLF--MVFGGFTTTLYTSLHGYFVFGPTGCNL 113
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
L ++ +L V++++RY + P++ R A + +A W+ + + P
Sbjct: 114 EGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGVAFTWVMALACAAPP 172
Query: 188 ILWWRAVRNEEVPKNKCPF--------TDSKGYLIFSSTISFYLPLLVMVFTY----FKI 235
++ W E + + C T+++ ++I+ + F +PL+V+ F Y F +
Sbjct: 173 LVGWSRYIPEGM-QCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV 231
Query: 236 YRAAVVQTKSLKVGTKQVMSGSTSGEKELT 265
AA Q +S + + EKE+T
Sbjct: 232 KEAAAQQQES---------ATTQKAEKEVT 252
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 26/210 (12%)
Query: 69 NALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPF-SALYELLDHNWIFGLNWCDS 127
N L + V+ + L T NY +++LA+AD +V F + LY L ++FG C+
Sbjct: 55 NFLTLYVTVQHKKLRTPLNYILLNLAVADLF--MVFGGFTTTLYTSLHGYFVFGPTGCNL 112
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
L ++ +L V++++RY + P++ R A + +A W+ + + P
Sbjct: 113 EGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGVAFTWVMALACAAPP 171
Query: 188 ILWWRAVRNEEVPKNKCPF--------TDSKGYLIFSSTISFYLPLLVMVFTY----FKI 235
++ W E + + C T+++ ++I+ + F +PL+V+ F Y F +
Sbjct: 172 LVGWSRYIPEGM-QCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV 230
Query: 236 YRAAVVQTKSLKVGTKQVMSGSTSGEKELT 265
AA Q +S + + EKE+T
Sbjct: 231 KEAAAQQQES---------ATTQKAEKEVT 251
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 26/210 (12%)
Query: 69 NALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPF-SALYELLDHNWIFGLNWCDS 127
N L + V+ + L T NY +++LA+AD +V F + LY L ++FG C+
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLF--MVFGGFTTTLYTSLHGYFVFGPTGCNL 113
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
L ++ +L V++++RY + P++ R A + +A W+ + + P
Sbjct: 114 EGFFATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGVAFTWVMALACAAPP 172
Query: 188 ILWWRAVRNEEVPKNKCPF--------TDSKGYLIFSSTISFYLPLLVMVFTY----FKI 235
++ W E + + C T+++ ++I+ + F +PL+V+ F Y F +
Sbjct: 173 LVGWSRYIPEGM-QCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV 231
Query: 236 YRAAVVQTKSLKVGTKQVMSGSTSGEKELT 265
AA Q +S + + EKE+T
Sbjct: 232 KEAAAQQQES---------ATTQKAEKEVT 252
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 13/165 (7%)
Query: 76 VVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHN-WIFGLNWCDSWRSLDVL 134
++ + + T TNYF+++LA A+ + + Y + HN W +GL +C +
Sbjct: 57 ILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAV--HNEWYYGLFYCKFHNFFPIA 114
Query: 135 FSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILW---- 190
ASI ++ ++ DRY AI PL R+S + I ++W+ + ++FP +
Sbjct: 115 AVFASIYSMTAVAFDRYMAIIHPLQ--PRLSATATKVVICVIWVLALLLAFPQGYYSTTE 172
Query: 191 ---WRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTY 232
R V E P++ + K Y I + + ++LPLLV+ + Y
Sbjct: 173 TMPSRVVCMIEWPEHPNKIYE-KVYHICVTVLIYFLPLLVIGYAY 216
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 345 FIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
F +CWLPF + LL + + + +++ A++ WL ++ NP+IY C + FR
Sbjct: 257 FAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIM-WLAMSSTMYNPIIYCCLNDRFR 313
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 604 FIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 661
F +CWLPF + LL + + + +++ A++ WL ++ NP+IY C + FR
Sbjct: 257 FAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIM-WLAMSSTMYNPIIYCCLNDRFR 313
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 68 GNALVMIAVVRERYLHT---STNYFIMSLALADCLVGLVVMPFSALYELL--DHNWIFGL 122
GN++ + + R++ L + + +Y + SLAL+D L+ L+ MP LY + H W FG
Sbjct: 49 GNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVE-LYNFIWVHHPWAFGD 107
Query: 123 NWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGG 182
C + L + A+ LN+ +S+ RY AI P + MS R +I+ +W+ S
Sbjct: 108 AGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASAL 167
Query: 183 ISFPAILWWRAVRNEEVPKNK------CPFTDS---KGYLIFSSTISFYLPLLVM 228
++ P +L+ ++N P D+ K + ++ +SF P+LV+
Sbjct: 168 LAIP-MLFTMGLQNRSADGTHPGGLVCTPIVDTATVKVVIQVNTFMSFLFPMLVI 221
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 600 VMGVFIVCWLPFFVVNLLSAVCTKCFWSE---QDEELISAVVTWLGWINSGMNPVIYACW 656
V+ F+VCWLP+ V L+ + W+ + L + +S +NP++Y
Sbjct: 414 VVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLV 473
Query: 657 SRDFRR 662
S +FR+
Sbjct: 474 SANFRQ 479
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 341 VMGVFIVCWLPFFVVNLLSAVCTKCFWSE---QDEELISAVVTWLGWINSGMNPVIYACW 397
V+ F+VCWLP+ V L+ + W+ + L + +S +NP++Y
Sbjct: 414 VVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLV 473
Query: 398 SRDFRS 403
S +FR
Sbjct: 474 SANFRQ 479
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 595 KTLGIVMGVFIVCWLPFFVVNLLSAVC--TKCFWSEQDEELISAVVTWLGWINSGMNPVI 652
KT+ IV+ VFI CW P F++ LL C C + E + L +NSG NP+I
Sbjct: 421 KTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLV-----LAVLNSGTNPII 475
Query: 653 YACWSRDFRR 662
Y +++ RR
Sbjct: 476 YTLTNKEMRR 485
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 336 KTLGIVMGVFIVCWLPFFVVNLLSAVC--TKCFWSEQDEELISAVVTWLGWINSGMNPVI 393
KT+ IV+ VFI CW P F++ LL C C + E + L +NSG NP+I
Sbjct: 421 KTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLV-----LAVLNSGTNPII 475
Query: 394 YACWSRDFR 402
Y +++ R
Sbjct: 476 YTLTNKEMR 484
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 69 NALVMIAVVRERYLHTSTNYFIMSLALADCLVGL-----VVMPFSALYELLDHNWIFGLN 123
N V++ + + + H YFI +LAL+D L G+ +++ + Y+L W
Sbjct: 81 NIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGATTYKLTPAQWFL--- 137
Query: 124 WCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGI 183
S+ V S AS+ +L I+++RY + + + + R ++ I+ W+ S +
Sbjct: 138 ---REGSMFVALS-ASVFSLLAIAIERYITMLK-MKLHNGSNNFRLFLLISACWVISLIL 192
Query: 184 SFPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQT 243
I+ W + P K Y++F +T+ F L LL +V Y +IY ++V+T
Sbjct: 193 GGLPIMGWNCISALSSCSTVLPLYH-KHYILFCTTV-FTLLLLSIVILYCRIY--SLVRT 248
Query: 244 KSL 246
+++
Sbjct: 249 RNI 251
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LV++ + ++ L + T+ + + L++AD L ++ +PF A+ + NW FG C +
Sbjct: 65 GNGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWAVDAV--ANWYFGNFLCKA 121
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
+ + +S+ L ISLDRY AI + + R + +V++ G+ PA
Sbjct: 122 VHVIYTVNLYSSVWILAFISLDRYLAI----VHATNSQRPRKLLAEKVVYV---GVWIPA 174
Query: 188 IL 189
+L
Sbjct: 175 LL 176
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 326 SKFAKEKKAAKTLGIVMGVFIVCWLPFFV------VNLLSAVCTKCFWSEQDEELISAVV 379
SK +++KA KT I++ F CWLP+++ LL + C + + IS +
Sbjct: 403 SKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWIS-IT 461
Query: 380 TWLGWINSGMNPVIYACWSRDFRSKEK 406
L + + +NP++YA F++ +
Sbjct: 462 EALAFFHCCLNPILYAFLGAKFKTSAQ 488
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 585 SKFAKEKKAAKTLGIVMGVFIVCWLPFFV------VNLLSAVCTKCFWSEQDEELISAVV 638
SK +++KA KT I++ F CWLP+++ LL + C + + IS +
Sbjct: 403 SKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWIS-IT 461
Query: 639 TWLGWINSGMNPVIYACWSRDFR 661
L + + +NP++YA F+
Sbjct: 462 EALAFFHCCLNPILYAFLGAKFK 484
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LV++ + ++ L + T+ + + L++AD L ++ +PF A+ + NW FG C +
Sbjct: 65 GNGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWAVDAV--ANWYFGNFLCKA 121
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
+ + +S+ L ISLDRY AI + + R + +V++ G+ PA
Sbjct: 122 VHVIYTVNLYSSVWILAFISLDRYLAI----VHATNSQRPRKLLAEKVVYV---GVWIPA 174
Query: 188 IL 189
+L
Sbjct: 175 LL 176
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 326 SKFAKEKKAAKTLGIVMGVFIVCWLPFFV------VNLLSAVCTKCFWSEQDEELISAVV 379
SK +++KA KT I++ F CWLP+++ LL + C + + IS +
Sbjct: 403 SKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWIS-IT 461
Query: 380 TWLGWINSGMNPVIYACWSRDFRSKEK 406
L + + +NP++YA F++ +
Sbjct: 462 EALAFFHCCLNPILYAFLGAKFKTSAQ 488
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 585 SKFAKEKKAAKTLGIVMGVFIVCWLPFFV------VNLLSAVCTKCFWSEQDEELISAVV 638
SK +++KA KT I++ F CWLP+++ LL + C + + IS +
Sbjct: 403 SKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWIS-IT 461
Query: 639 TWLGWINSGMNPVIYACWSRDFR 661
L + + +NP++YA F+
Sbjct: 462 EALAFFHCCLNPILYAFLGAKFK 484
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN LV++ + ++ L + T+ + + L++AD L ++ +PF A+ + NW FG C +
Sbjct: 65 GNGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWAVDAV--ANWYFGNFLCKA 121
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPA 187
+ + +S+ L ISLDRY AI + + R + +V++ G+ PA
Sbjct: 122 VHVIYTVNLYSSVWILAFISLDRYLAI----VHATNSQRPRKLLAEKVVYV---GVWIPA 174
Query: 188 IL 189
+L
Sbjct: 175 LL 176
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 330 KEKKAAKTLGIVMGVFIVCWLPFFV------VNLLSAVCTKCFWSEQDEELISAVVTWLG 383
+++KA K I++ F CWLP+++ LL + C + + IS + L
Sbjct: 404 QKRKALKPTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWIS-ITEALA 462
Query: 384 WINSGMNPVIYACWSRDFRSKEK 406
+ + +NP++YA F++ +
Sbjct: 463 FFHCCLNPILYAFLGAKFKTSAQ 485
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 589 KEKKAAKTLGIVMGVFIVCWLPFFV------VNLLSAVCTKCFWSEQDEELISAVVTWLG 642
+++KA K I++ F CWLP+++ LL + C + + IS + L
Sbjct: 404 QKRKALKPTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWIS-ITEALA 462
Query: 643 WINSGMNPVIYACWSRDFR 661
+ + +NP++YA F+
Sbjct: 463 FFHCCLNPILYAFLGAKFK 481
>pdb|1HLL|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
Alpha- 2a Adrenergic Receptor
Length = 32
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 137 TASILNLCVISLDRYWAITDPLTYPSRMSTRR 168
T+SI++LC ISLDRYW+IT + Y + + RR
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 22/177 (12%)
Query: 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDS 127
GN+LVM+ ++ R + T+ ++++LALAD L+ + +P A ++ + WIFG C
Sbjct: 28 GNSLVMLVILYSRVGRSVTDVYLLNLALAD-LLFALTLPIWAASKV--NGWIFGTFLCKV 84
Query: 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSG--GISF 185
L + + IL L IS+DRY AI + +R T++ ++ + ++C G G+S
Sbjct: 85 VSLLKEVNFYSGILLLACISVDRYLAI----VHATRTLTQKRHL---VKFVCLGCWGLSM 137
Query: 186 PAILWWRAVRNEEVPKNKCPF------TDSKGY----LIFSSTISFYLPLLVMVFTY 232
L + R P N P D+ + I T F +PL VM+F Y
Sbjct: 138 NLSLPFFLFRQAYHPNNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCY 194
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 326 SKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISA-----VVT 380
+ ++ +A + + V+ +F++CWLP+ +V L + E E +
Sbjct: 204 AHMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATE 263
Query: 381 WLGWINSGMNPVIYACWSRDFR 402
LG+++S +NP+IYA ++FR
Sbjct: 264 ILGFLHSCLNPIIYAFIGQNFR 285
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 585 SKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISA-----VVT 639
+ ++ +A + + V+ +F++CWLP+ +V L + E E +
Sbjct: 204 AHMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATE 263
Query: 640 WLGWINSGMNPVIYACWSRDFR 661
LG+++S +NP+IYA ++FR
Sbjct: 264 ILGFLHSCLNPIIYAFIGQNFR 285
>pdb|1HOF|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
Alpha- 2a Adrenergic Receptor
Length = 32
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 138 ASILNLCVISLDRYWAITDPLTYPSRMSTRR 168
+SI++LC ISLDRYW+IT + Y + + RR
Sbjct: 2 SSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 89 FIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISL 148
+++ LA AD L + V+PF Y +W FG C + ASIL + VIS+
Sbjct: 58 YMLHLATADVLF-VSVLPFKISYYFSGSDWQFGSELCRFVTAAFYCNMYASILLMTVISI 116
Query: 149 DRYWAITDPLTYPS-RMSTRRAYIWIAIVWICSGGI 183
DR+ A+ P+ S R R ++ +AI + G+
Sbjct: 117 DRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGV 152
>pdb|1HO9|A Chain A, Best 20 Nmr Conformers Of D130i Mutant T3-I2, A 32 Residue
Peptide From The Alpha 2a Adrenergic Receptor
pdb|1HOD|A Chain A, Nmr Structure Of D130i Mutant T3-I2, A 32 Residue Peptide
From The Alpha 2a Adrenergic Receptor
Length = 32
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 138 ASILNLCVISLDRYWAITDPLTYPSRMSTRR 168
+SI++LC ISL RYW+IT + Y + + RR
Sbjct: 2 SSIVHLCAISLIRYWSITQAIEYNLKRTPRR 32
>pdb|2KI9|A Chain A, Human Cannabinoid Receptor-2 Helix 6
Length = 33
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 333 KAAKTLGIVMGVFIVCWLPFFVV 355
+ AKTLG+V+ V ++CW P +
Sbjct: 3 RLAKTLGLVLAVLLICWFPVLAL 25
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 592 KAAKTLGIVMGVFIVCWLPFFVV 614
+ AKTLG+V+ V ++CW P +
Sbjct: 3 RLAKTLGLVLAVLLICWFPVLAL 25
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,712,115
Number of Sequences: 62578
Number of extensions: 732038
Number of successful extensions: 1749
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1482
Number of HSP's gapped (non-prelim): 147
length of query: 662
length of database: 14,973,337
effective HSP length: 105
effective length of query: 557
effective length of database: 8,402,647
effective search space: 4680274379
effective search space used: 4680274379
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)