Query psy5093
Match_columns 662
No_of_seqs 366 out of 4017
Neff 10.6
Searched_HMMs 46136
Date Fri Aug 16 17:08:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5093.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5093hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 100.0 1.8E-42 3.9E-47 326.8 18.3 293 44-412 28-336 (423)
2 KOG4220|consensus 100.0 7.7E-42 1.7E-46 320.8 14.9 356 51-412 30-488 (503)
3 PHA03234 DNA packaging protein 100.0 6.8E-39 1.5E-43 319.6 25.2 281 46-416 27-321 (338)
4 PHA03235 DNA packaging protein 100.0 9E-37 1.9E-41 310.9 26.7 283 41-411 22-323 (409)
5 PHA02834 chemokine receptor-li 100.0 1.9E-36 4.2E-41 302.9 23.3 275 50-415 27-313 (323)
6 PHA02638 CC chemokine receptor 100.0 2.9E-35 6.4E-40 301.5 27.5 276 50-413 97-399 (417)
7 PHA03087 G protein-coupled che 100.0 6.7E-33 1.4E-37 280.9 25.0 281 46-414 35-326 (335)
8 PF00001 7tm_1: 7 transmembran 100.0 2E-30 4.4E-35 253.6 20.0 253 68-394 1-257 (257)
9 KOG4220|consensus 99.9 2.9E-26 6.3E-31 216.3 13.4 294 349-662 83-479 (503)
10 KOG2087|consensus 99.9 8.9E-25 1.9E-29 205.3 4.4 274 51-413 24-308 (363)
11 PF10320 7TM_GPCR_Srsx: Serpen 99.9 1.5E-21 3.3E-26 187.4 11.8 254 63-409 2-257 (257)
12 KOG4219|consensus 99.8 3.7E-21 8E-26 182.9 10.1 167 423-662 145-327 (423)
13 PHA03234 DNA packaging protein 99.8 1.4E-19 2.9E-24 181.0 20.2 147 430-662 149-308 (338)
14 PHA03235 DNA packaging protein 99.8 4.5E-19 9.7E-24 181.2 22.3 154 424-662 144-315 (409)
15 PF10324 7TM_GPCR_Srw: Serpent 99.8 2.8E-19 6.1E-24 179.6 20.3 278 60-412 5-318 (318)
16 PHA02834 chemokine receptor-li 99.8 3.6E-18 7.9E-23 171.1 18.5 151 426-662 139-301 (323)
17 PHA02638 CC chemokine receptor 99.8 2.3E-17 5.1E-22 169.6 20.8 157 422-662 206-389 (417)
18 PF10328 7TM_GPCR_Srx: Serpent 99.7 1.9E-16 4.2E-21 154.7 19.6 268 60-409 2-273 (274)
19 PHA03087 G protein-coupled che 99.7 4.5E-16 9.7E-21 157.8 19.5 160 418-662 145-315 (335)
20 PF00001 7tm_1: 7 transmembran 99.7 4.4E-15 9.5E-20 144.9 21.3 163 418-653 91-257 (257)
21 PF05296 TAS2R: Mammalian tast 99.7 4E-14 8.7E-19 138.9 24.6 285 49-412 4-302 (303)
22 PF10323 7TM_GPCR_Srv: Serpent 99.6 1.9E-14 4.2E-19 140.1 14.0 270 62-410 5-282 (283)
23 PF05462 Dicty_CAR: Slime mold 99.6 7.4E-13 1.6E-17 128.0 22.5 259 52-407 7-266 (303)
24 PF10321 7TM_GPCR_Srt: Serpent 99.5 7.1E-13 1.5E-17 128.9 18.0 273 48-413 29-309 (313)
25 PF03402 V1R: Vomeronasal orga 99.1 3.1E-10 6.7E-15 106.6 10.1 243 83-405 8-263 (265)
26 PF10317 7TM_GPCR_Srd: Serpent 99.1 9.9E-09 2.2E-13 101.2 21.1 263 56-407 3-292 (292)
27 KOG2087|consensus 98.9 3.1E-11 6.7E-16 114.6 -5.9 150 424-662 144-298 (363)
28 PF11710 Git3: G protein-coupl 98.8 9.7E-08 2.1E-12 87.2 14.7 161 80-245 30-200 (201)
29 KOG4193|consensus 98.7 8.3E-07 1.8E-11 94.0 17.9 263 51-413 319-583 (610)
30 PF10327 7TM_GPCR_Sri: Serpent 98.6 4E-06 8.7E-11 82.6 19.2 264 53-404 10-302 (303)
31 PF10292 7TM_GPCR_Srab: Serpen 98.6 2.5E-05 5.4E-10 78.2 25.1 110 54-163 19-134 (324)
32 PF02118 Srg: Srg family chemo 98.6 2.3E-06 5E-11 84.1 16.1 183 59-243 5-199 (275)
33 PF02101 Ocular_alb: Ocular al 98.5 1.2E-05 2.6E-10 77.5 19.4 142 87-242 68-219 (405)
34 PF10324 7TM_GPCR_Srw: Serpent 98.5 2.1E-06 4.6E-11 86.3 13.4 174 415-662 111-309 (318)
35 PF10326 7TM_GPCR_Str: Serpent 98.3 1.3E-07 2.8E-12 94.5 0.7 263 59-406 6-307 (307)
36 PF04789 DUF621: Protein of un 98.2 0.00015 3.2E-09 66.7 17.9 248 68-405 31-292 (305)
37 KOG4564|consensus 98.2 8.6E-05 1.9E-09 75.4 18.1 264 56-415 149-423 (473)
38 PF10318 7TM_GPCR_Srh: Serpent 98.2 0.0002 4.4E-09 71.3 20.6 273 54-411 6-302 (302)
39 PF10319 7TM_GPCR_Srj: Serpent 98.2 0.00026 5.6E-09 67.8 19.3 69 330-404 240-309 (310)
40 PF10316 7TM_GPCR_Srbc: Serpen 98.2 0.00026 5.5E-09 67.9 19.2 132 51-182 5-138 (273)
41 PF05296 TAS2R: Mammalian tast 98.0 0.001 2.2E-08 65.7 20.8 112 473-662 182-293 (303)
42 PF00002 7tm_2: 7 transmembran 98.0 2.5E-06 5.5E-11 82.0 1.9 131 55-191 4-134 (242)
43 PF03125 Sre: C. elegans Sre G 97.7 0.014 3E-07 59.6 22.8 42 372-413 282-323 (365)
44 PF10321 7TM_GPCR_Srt: Serpent 97.6 0.0032 7E-08 61.9 16.5 63 589-662 237-299 (313)
45 PF02117 7TM_GPCR_Sra: Serpent 97.6 0.012 2.7E-07 58.7 20.4 110 51-160 20-136 (328)
46 PF10323 7TM_GPCR_Srv: Serpent 97.5 0.00078 1.7E-08 66.0 10.2 165 418-662 110-275 (283)
47 PF10322 7TM_GPCR_Sru: Serpent 97.4 0.026 5.7E-07 55.2 19.6 121 122-243 100-226 (307)
48 PF10320 7TM_GPCR_Srsx: Serpen 97.2 0.0013 2.8E-08 63.5 8.6 71 589-662 181-251 (257)
49 PF02076 STE3: Pheromone A rec 97.2 0.044 9.6E-07 53.1 18.2 126 64-196 3-131 (283)
50 PF05462 Dicty_CAR: Slime mold 97.0 0.27 5.8E-06 48.3 22.5 58 597-661 204-261 (303)
51 PF01534 Frizzled: Frizzled/Sm 96.7 0.67 1.5E-05 46.0 22.3 150 54-207 11-172 (328)
52 PF10328 7TM_GPCR_Srx: Serpent 96.2 0.045 9.7E-07 53.6 10.8 66 587-662 202-267 (274)
53 PF06681 DUF1182: Protein of u 96.1 0.044 9.6E-07 48.5 8.8 96 59-159 48-151 (226)
54 PF11970 Git3_C: G protein-cou 95.8 0.058 1.3E-06 40.2 7.3 70 588-661 5-75 (76)
55 PF10327 7TM_GPCR_Sri: Serpent 95.6 0.37 8E-06 47.7 14.4 70 587-662 232-301 (303)
56 PF11970 Git3_C: G protein-cou 95.0 0.078 1.7E-06 39.5 5.7 71 327-401 3-74 (76)
57 PF03402 V1R: Vomeronasal orga 94.3 0.12 2.5E-06 49.3 6.6 66 589-661 195-260 (265)
58 PF02101 Ocular_alb: Ocular al 94.2 0.52 1.1E-05 46.4 10.6 25 595-619 244-268 (405)
59 PF02175 7TM_GPCR_Srb: Serpent 94.0 5 0.00011 37.1 16.2 49 116-164 76-124 (236)
60 PF04789 DUF621: Protein of un 92.8 8.8 0.00019 36.3 18.4 31 468-499 184-214 (305)
61 PF03383 Serpentine_r_xa: Caen 92.3 0.1 2.3E-06 44.6 2.5 61 129-189 48-108 (153)
62 PF13853 7tm_4: Olfactory rece 89.4 0.0052 1.1E-07 53.2 -8.2 75 427-501 2-87 (144)
63 PF10317 7TM_GPCR_Srd: Serpent 88.3 3.6 7.9E-05 40.5 10.0 69 588-662 220-288 (292)
64 KOG4289|consensus 78.5 18 0.00039 42.3 10.7 62 121-188 2222-2283(2531)
65 PF02118 Srg: Srg family chemo 73.9 89 0.0019 30.3 18.4 22 641-662 252-273 (275)
66 PF10326 7TM_GPCR_Str: Serpent 69.0 1.1 2.5E-05 44.6 -1.0 67 589-662 237-304 (307)
67 KOG4193|consensus 62.0 40 0.00087 36.8 8.8 73 425-502 424-496 (610)
68 PF10325 7TM_GPCR_Srz: Serpent 61.7 1E+02 0.0022 29.8 11.1 113 129-245 86-199 (267)
69 PF10318 7TM_GPCR_Srh: Serpent 59.6 1.8E+02 0.004 28.6 14.3 68 588-662 226-294 (302)
70 PF11710 Git3: G protein-coupl 56.7 77 0.0017 29.1 8.7 49 456-504 151-200 (201)
71 PF10292 7TM_GPCR_Srab: Serpen 55.1 2.3E+02 0.005 28.3 14.2 75 585-661 223-297 (324)
72 PF10319 7TM_GPCR_Srj: Serpent 52.5 1.3E+02 0.0028 29.7 9.6 47 59-105 12-59 (310)
73 PF02076 STE3: Pheromone A rec 49.8 1.1E+02 0.0023 30.0 8.8 26 592-618 196-221 (283)
74 KOG2575|consensus 39.1 34 0.00074 34.4 3.5 26 590-615 254-279 (510)
75 PF13853 7tm_4: Olfactory rece 38.9 3.1 6.8E-05 35.9 -3.2 73 171-243 5-88 (144)
76 KOG4564|consensus 38.1 32 0.00069 36.0 3.4 62 589-661 348-410 (473)
77 PF00002 7tm_2: 7 transmembran 38.1 11 0.00023 36.0 0.0 21 592-612 195-215 (242)
78 KOG1056|consensus 37.6 3E+02 0.0066 31.5 10.8 45 52-96 559-610 (878)
79 PF00003 7tm_3: 7 transmembran 36.2 45 0.00097 31.6 4.0 24 121-144 52-75 (238)
80 PF09889 DUF2116: Uncharacteri 32.9 76 0.0017 22.4 3.5 21 589-609 34-54 (59)
81 PF05399 EVI2A: Ectropic viral 29.4 4.5E+02 0.0097 24.1 8.8 21 332-352 128-148 (227)
82 PF15050 SCIMP: SCIMP protein 28.7 1.4E+02 0.0031 24.2 4.8 33 209-241 5-37 (133)
83 PF10322 7TM_GPCR_Sru: Serpent 26.2 6.5E+02 0.014 25.0 19.2 22 481-502 205-226 (307)
84 PF05915 DUF872: Eukaryotic pr 25.0 3.9E+02 0.0085 22.0 7.6 29 48-76 40-68 (115)
85 PF06454 DUF1084: Protein of u 23.0 7.1E+02 0.015 24.3 21.9 52 49-103 26-78 (281)
86 PF15086 UPF0542: Uncharacteri 21.4 2.3E+02 0.005 20.8 4.2 37 470-506 19-56 (74)
87 COG2322 Predicted membrane pro 20.2 3E+02 0.0066 24.1 5.5 103 324-448 68-171 (177)
88 PF15069 FAM163: FAM163 family 20.1 5.5E+02 0.012 21.9 7.4 24 220-243 15-38 (143)
No 1
>KOG4219|consensus
Probab=100.00 E-value=1.8e-42 Score=326.80 Aligned_cols=293 Identities=26% Similarity=0.446 Sum_probs=245.8
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhcccccccccc
Q psy5093 44 WLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLN 123 (662)
Q Consensus 44 ~~~~~~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~ 123 (662)
+....+.+.+.+++++++.+++++||.+|++++..+|++|+.+|+|++|||+||++.+++..++.....+ ..+|.+|.+
T Consensus 28 f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal-~~~W~~G~f 106 (423)
T KOG4219|consen 28 FVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYAL-HQEWYFGSF 106 (423)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH-Hhccccccc
Confidence 4456667899999999999999999999999999999999999999999999999999999998777665 468999999
Q ss_pred chhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCC---C
Q psy5093 124 WCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEV---P 200 (662)
Q Consensus 124 ~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~---~ 200 (662)
+|++..|+..+...+|++++++||+|||.||.+|++. +.+++...++++++|++++++++|..+.......... .
T Consensus 107 ~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~--r~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~ 184 (423)
T KOG4219|consen 107 YCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQP--RPSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGES 184 (423)
T ss_pred eeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhccc--CCCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcc
Confidence 9999999999999999999999999999999999984 3899999999999999999999999987655533221 1
Q ss_pred CCcc---------ccCC----CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceee
Q psy5093 201 KNKC---------PFTD----SKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLR 267 (662)
Q Consensus 201 ~~~c---------~~~~----~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (662)
...| .... ...|.....++.+++|++++.++|..|.+++|..+.....
T Consensus 185 ~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~------------------- 245 (423)
T KOG4219|consen 185 RVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQ------------------- 245 (423)
T ss_pred eEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccch-------------------
Confidence 1222 2111 2337888899999999999999999999999975421100
Q ss_pred eccCCCCCCCCccCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHh
Q psy5093 268 IHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIV 347 (662)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i 347 (662)
..+..+..+..+|+.||++++++.|.+
T Consensus 246 -----------------------------------------------------~d~~~~~~kak~K~vkmliiVV~~Fai 272 (423)
T KOG4219|consen 246 -----------------------------------------------------QDRKHEQLKAKKKVVKMLIIVVVIFAI 272 (423)
T ss_pred -----------------------------------------------------hchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 002223445788999999999999999
Q ss_pred hhhhHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccC
Q psy5093 348 CWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKI 412 (662)
Q Consensus 348 ~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~ 412 (662)
||+|+.+..++....++.. ........+....||+..|+++||+||++.|++||.++++.||.|
T Consensus 273 cWlPyh~y~il~~~~~~i~-~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~c 336 (423)
T KOG4219|consen 273 CWLPYHIYFILNATNPEIN-RKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWC 336 (423)
T ss_pred hccChhHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhhee
Confidence 9999999999987654422 344556678899999999999999999999999999999999775
No 2
>KOG4220|consensus
Probab=100.00 E-value=7.7e-42 Score=320.79 Aligned_cols=356 Identities=32% Similarity=0.497 Sum_probs=252.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHHHH
Q psy5093 51 RTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRS 130 (662)
Q Consensus 51 ~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~~~ 130 (662)
.+.++++.++++++.++||++|++.+--+|++++..|+|+++||+|||+.|++.+|+...+.+ -+.|++|...|.+...
T Consensus 30 ~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~l-mg~W~LG~~~CdlWLa 108 (503)
T KOG4220|consen 30 VVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTL-MGYWPLGPLVCDLWLA 108 (503)
T ss_pred EEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHH-HcccccchHHHHHHHH
Confidence 456777888999999999999999999999999999999999999999999999997776655 5789999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhcccc-CCCCCCcc--ccC
Q psy5093 131 LDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRN-EEVPKNKC--PFT 207 (662)
Q Consensus 131 ~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~-~~~~~~~c--~~~ 207 (662)
+.++...+|++.+..|++|||+.|.+|+.|+.+.|++++..++++.|++++++-.|.+++|..... .....+.| ++-
T Consensus 109 lDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~iQFl 188 (503)
T KOG4220|consen 109 LDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECYIQFL 188 (503)
T ss_pred HHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCCceEEEee
Confidence 999999999999999999999999999999999999999999999999999999999999876643 34555666 444
Q ss_pred CCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccC--------C------------CCCCcc--c-
Q psy5093 208 DSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSG--------S------------TSGEKE--L- 264 (662)
Q Consensus 208 ~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~--------~------------~~~~~~--~- 264 (662)
.......-..+..|.+|+++|.+.|.+|++..+++.+.....+....+. + .+++.. .
T Consensus 189 snp~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~~p~~~~~~~~~ 268 (503)
T KOG4220|consen 189 SNPAITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRSSPSEEGKREPL 268 (503)
T ss_pred cCceeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCcccccccccCCCCCCCccccccccC
Confidence 4555556667788999999999999999999998877544222111000 0 000000 0
Q ss_pred -e--eeeccCCCCCCCCccC---CCCCCccc--------------------------------ccc-----------ccc
Q psy5093 265 -T--LRIHRGGTDHRHMTLH---HTPSDDVE--------------------------------MDN-----------VMS 295 (662)
Q Consensus 265 -~--~~~~~~~~~~~~~~~~---~~~~~~~~--------------------------------~~~-----------~~~ 295 (662)
. .+..+.....+..... ..++++.. .+. .+.
T Consensus 269 ~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~se~~~~~~v~~~~~~~~~~~D~~~~~~~i~i~~~~~ 348 (503)
T KOG4220|consen 269 TNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGSELSEIEAVVAKMPANQRKVDEEGLNTLIQIPTDQM 348 (503)
T ss_pred CCCccccccCcccCCccCCCCccccccccccccccccCCccccccccccccceeccCCCCcCCCCccccccccccccccC
Confidence 0 0000000000000000 00000000 000 000
Q ss_pred cCC-Cccc-------cccccccccccccccc--------------------cccccchhhHHhhhhhHHHHHHHHHHHHh
Q psy5093 296 GHN-GITR-------QVSNTRIIHKGHIVKN--------------------FSLSRKLSKFAKEKKAAKTLGIVMGVFIV 347 (662)
Q Consensus 296 ~~~-~~~~-------~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~l~~i~~~f~i 347 (662)
.+. +... ........+.....++ ...++++....+|+|+++++.+|.+.|++
T Consensus 349 ~p~s~sc~p~~~~t~~~~~s~~ns~~gk~r~~~~~~~~~~~~kkf~~~~r~q~~k~k~~~~~rErKAAkTLsAILlAFIi 428 (503)
T KOG4220|consen 349 LPKSDSCVPIFSATDTDKTTDTNSGAGKRRAGPVARKTGLDYKKFAKRARSQSRKKKKMSLVRERKAAKTLSAILLAFIL 428 (503)
T ss_pred CCCCCcccccccccccccCCccCccccccccCccccccchhhhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHH
Confidence 000 0000 0000000000000000 01111222347899999999999999999
Q ss_pred hhhhHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccC
Q psy5093 348 CWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKI 412 (662)
Q Consensus 348 ~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~ 412 (662)
+|.||.|+.++..++.+|. +..+..+..||.|+||-+||++|.+.|..||+.+|+++.+.
T Consensus 429 TWtPYNImVlv~tFC~~Ci-----P~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~Cr 488 (503)
T KOG4220|consen 429 TWTPYNIMVLVNTFCKNCI-----PETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLLCR 488 (503)
T ss_pred HcccceeeeehHhhccccc-----chhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhheee
Confidence 9999999999999987654 67888999999999999999999999999999998865443
No 3
>PHA03234 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=6.8e-39 Score=319.61 Aligned_cols=281 Identities=19% Similarity=0.236 Sum_probs=212.2
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHhhHhhhhhee--ccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhcccccccccc
Q psy5093 46 ELAQQRTLLVSTLSLFSLVTVFGNALVMIAVV--RERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLN 123 (662)
Q Consensus 46 ~~~~~~~i~~~~~~ii~i~gl~gN~~vi~~i~--~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~ 123 (662)
..+..+.+..++|.+++++|++||+++++++. +++++|+++|+|++|||++|++.++ .+|+.+... ...|.+|+.
T Consensus 27 ~~~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~~--~~~w~fG~~ 103 (338)
T PHA03234 27 TLKKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHML-CVFFLTLNR--EALFNFNQA 103 (338)
T ss_pred HHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHHHHHH--hCCccCchh
Confidence 44557788999999999999999999999554 5566789999999999999999965 466555433 357999999
Q ss_pred chhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCc
Q psy5093 124 WCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNK 203 (662)
Q Consensus 124 ~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~ 203 (662)
+|++..++..+...+|++++++||+|||++|++|.+++. ++++....+++.|+.+++.++|.++....... +.....
T Consensus 104 lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~-~~~~~~ 180 (338)
T PHA03234 104 FCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAALFVKTEGK-KGNYGK 180 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeec-CCCCCc
Confidence 999999999999999999999999999999999987642 33444455666799999999998865433222 112245
Q ss_pred cccCCC--cchhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCC
Q psy5093 204 CPFTDS--KGYLIF------SSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDH 275 (662)
Q Consensus 204 c~~~~~--~~~~~~------~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (662)
|..... ..+..+ ..++++++|++++++||.+|.+++++.++
T Consensus 181 C~~~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~~------------------------------- 229 (338)
T PHA03234 181 CNIHISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALTE------------------------------- 229 (338)
T ss_pred CcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------------------------------
Confidence 644332 222221 22335689999999999999988865211
Q ss_pred CCCccCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHH
Q psy5093 276 RHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVV 355 (662)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~ 355 (662)
++++|++|++++++++|++||+|+++.
T Consensus 230 -----------------------------------------------------~~~~k~~k~i~~vv~vF~iCWlPy~iv 256 (338)
T PHA03234 230 -----------------------------------------------------KKHKKTLFFIRILILSFLCIQIPNIAI 256 (338)
T ss_pred -----------------------------------------------------hhhhhhhhHHHHHHHHHHHHHhHHHHH
Confidence 056789999999999999999999998
Q ss_pred HHHHHhhccc----cCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCCccc
Q psy5093 356 NLLSAVCTKC----FWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPVV 416 (662)
Q Consensus 356 ~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~~~~ 416 (662)
.++....... ............++..++++||++||+||++.+++||+++++++++..+.+
T Consensus 257 ~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~~~~~~~~ 321 (338)
T PHA03234 257 LICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACFQDFFKCN 321 (338)
T ss_pred HHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHhhhh
Confidence 8765432110 001112334567888999999999999999999999999888776654443
No 4
>PHA03235 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=9e-37 Score=310.89 Aligned_cols=283 Identities=18% Similarity=0.204 Sum_probs=212.5
Q ss_pred hhhhHhHHhHHHHHHHHHHHHHHHHHHhhHhhhhheeccccc--cchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccc
Q psy5093 41 LERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYL--HTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNW 118 (662)
Q Consensus 41 ~~~~~~~~~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~l--r~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~ 118 (662)
++..+..+..+.+..+++.+++++|++||+++++++.++++. ++..++|++|||++|++. ++.+|+.+... ...|
T Consensus 22 c~~~~~~~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~~--~~~~ 98 (409)
T PHA03235 22 CVPTEGLSAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLSN--QGLL 98 (409)
T ss_pred CCchhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHhc--Cccc
Confidence 334445566778899999999999999999999875533332 356689999999999987 56788765432 2233
Q ss_pred cccccchhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhcc----
Q psy5093 119 IFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAV---- 194 (662)
Q Consensus 119 ~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~---- 194 (662)
..++..|++..++..+...+|++++++||+|||++|++|.++ +..+++++..+++++|+.+++.++|..+.....
T Consensus 99 ~~g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~-~~~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~ 177 (409)
T PHA03235 99 SGSVAGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRA-RSSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDD 177 (409)
T ss_pred cCCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhc-cCcccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 445789999999999999999999999999999999999764 445788899999999999999999976543221
Q ss_pred -ccCCCCCCccccCCCc--------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccce
Q psy5093 195 -RNEEVPKNKCPFTDSK--------GYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELT 265 (662)
Q Consensus 195 -~~~~~~~~~c~~~~~~--------~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (662)
.........|...... .|.....++.+++|++++++||.+|+++++++.++
T Consensus 178 ~~~~~~~~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~~-------------------- 237 (409)
T PHA03235 178 VDPEAPGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASYK-------------------- 237 (409)
T ss_pred cCcCCCCcceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------------------
Confidence 1112234457432211 13334556678999999999999999998865321
Q ss_pred eeeccCCCCCCCCccCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHH
Q psy5093 266 LRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVF 345 (662)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f 345 (662)
+++|..++++++++.|
T Consensus 238 ----------------------------------------------------------------~~~k~~~~v~iivv~F 253 (409)
T PHA03235 238 ----------------------------------------------------------------KRSRTLTFVCILLLSF 253 (409)
T ss_pred ----------------------------------------------------------------cchhhhhhHHHHHHHH
Confidence 3346678888999999
Q ss_pred HhhhhhHHHHHHHHHhhccc----cCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhccc
Q psy5093 346 IVCWLPFFVVNLLSAVCTKC----FWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHK 411 (662)
Q Consensus 346 ~i~~~P~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~ 411 (662)
++||+|+.++.++..+.... .........+..+..+++++|+++||+||++++++||+++++.+++
T Consensus 254 ~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~ 323 (409)
T PHA03235 254 LCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRG 323 (409)
T ss_pred HHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhh
Confidence 99999999998876543210 0011223456678889999999999999999999999999887754
No 5
>PHA02834 chemokine receptor-like protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=302.87 Aligned_cols=275 Identities=18% Similarity=0.380 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHHH
Q psy5093 50 QRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWR 129 (662)
Q Consensus 50 ~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~~ 129 (662)
...+..+++.++.++|++||+++++++.++++ +++.++|++|||++|++. ++.+|+.+.... ++|.+|+..|++..
T Consensus 27 ~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~~--~~w~~g~~~C~~~~ 102 (323)
T PHA02834 27 VNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHNDL--NEWIFGEFMCKLVL 102 (323)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHHc--CCcCCcchHHHhHH
Confidence 35567899999999999999999998887665 457899999999999987 667887654432 46999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccCCC
Q psy5093 130 SLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDS 209 (662)
Q Consensus 130 ~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 209 (662)
++......+|++++++||+|||++|++|++++. .+.+++..+++++|+++++.++|+.+.+..... .....|.....
T Consensus 103 ~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~~--~~~~~C~~~~~ 179 (323)
T PHA02834 103 GVYFVGFFSNMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMVLYYVDNT--DNLKQCIFNDY 179 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhHHHHHHhccC--CCceEEeccCC
Confidence 999999999999999999999999999998644 455677788889999999999998776543211 12234642221
Q ss_pred -cc---h---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCC
Q psy5093 210 -KG---Y---LIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHH 282 (662)
Q Consensus 210 -~~---~---~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (662)
.. + .....++.+++|+++++++|.+|.+.+++++++
T Consensus 180 ~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~~------------------------------------- 222 (323)
T PHA02834 180 HENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKNK------------------------------------- 222 (323)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-------------------------------------
Confidence 11 1 112346788999999999999999988753210
Q ss_pred CCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q psy5093 283 TPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVC 362 (662)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~ 362 (662)
+++|.+|+++++++.|++||+|+.+..++..+.
T Consensus 223 -----------------------------------------------~~~k~~k~~~~vv~~F~icWlPy~i~~~l~~~~ 255 (323)
T PHA02834 223 -----------------------------------------------NKTRSIKIILTVVTFTVVFWVPFNIVLFINSLQ 255 (323)
T ss_pred -----------------------------------------------ccceEEeehhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345678899999999999999999998876553
Q ss_pred ccccCC--Cc---hhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCCcc
Q psy5093 363 TKCFWS--EQ---DEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPV 415 (662)
Q Consensus 363 ~~~~~~--~~---~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~~~ 415 (662)
...... .. .......+..+++++|+++||+||++.+++||+++++++|+..+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~~~~~~~~ 313 (323)
T PHA02834 256 SVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMFCRTNNI 313 (323)
T ss_pred HhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHHHHHHHhhhhh
Confidence 211101 01 111234577889999999999999999999999999998776554
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=100.00 E-value=2.9e-35 Score=301.47 Aligned_cols=276 Identities=21% Similarity=0.400 Sum_probs=217.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHHH
Q psy5093 50 QRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWR 129 (662)
Q Consensus 50 ~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~~ 129 (662)
......+++.+++++|++||+++++++.+ |++|++++++++|||++|++. ++.+|+++... .++|.+|+..|++..
T Consensus 97 ~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~-~l~lPf~i~~~--~~~W~fg~~~Ck~~~ 172 (417)
T PHA02638 97 ISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIF-VIDFPFIIYNE--FDQWIFGDFMCKVIS 172 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHH-HHHHHHHHHHH--hccccccccchhhHH
Confidence 45678888999999999999999977654 778999999999999999988 55788776544 357999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccc------cCC--CCC
Q psy5093 130 SLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVR------NEE--VPK 201 (662)
Q Consensus 130 ~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~------~~~--~~~ 201 (662)
++......++++.++++++|||++|++|.++++..+++...+.++++|+++++.++|+++..+... ..+ ...
T Consensus 173 ~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~ 252 (417)
T PHA02638 173 ASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISN 252 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccC
Confidence 999999999999999999999999999999877778788888899999999999999988765331 111 112
Q ss_pred CccccCCC--c---c-----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccC
Q psy5093 202 NKCPFTDS--K---G-----YLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRG 271 (662)
Q Consensus 202 ~~c~~~~~--~---~-----~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (662)
..|..... . . +.....++.+++|++++++||.+|++++++.+++
T Consensus 253 ~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~~-------------------------- 306 (417)
T PHA02638 253 YQCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKKS-------------------------- 306 (417)
T ss_pred CeeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------------------------
Confidence 35533221 1 1 1222346678899999999999999998764221
Q ss_pred CCCCCCCccCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhh
Q psy5093 272 GTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLP 351 (662)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P 351 (662)
+++|.+|+++++++.|++||+|
T Consensus 307 ----------------------------------------------------------~k~k~~rli~~ivi~f~lcW~P 328 (417)
T PHA02638 307 ----------------------------------------------------------KKTKSIIIVSIIIICSLICWIP 328 (417)
T ss_pred ----------------------------------------------------------ccchhhhhHHHHHHHHHHHHhh
Confidence 3557789999999999999999
Q ss_pred HHHHHHHHHhhccccC-------CC--chhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCC
Q psy5093 352 FFVVNLLSAVCTKCFW-------SE--QDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKIS 413 (662)
Q Consensus 352 ~~i~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~ 413 (662)
+.+..++..+...... +. ........++..++++|+++||+||++.+++||+++++++++..
T Consensus 329 y~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~l~~~~~~~~ 399 (417)
T PHA02638 329 LNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGENFRMHLLMIFRNIF 399 (417)
T ss_pred HHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHHHHHHHHHhc
Confidence 9999888765421110 00 12334556788999999999999999999999999988886655
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=100.00 E-value=6.7e-33 Score=280.85 Aligned_cols=281 Identities=25% Similarity=0.385 Sum_probs=219.2
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccch
Q psy5093 46 ELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWC 125 (662)
Q Consensus 46 ~~~~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C 125 (662)
..+..+.+..+++.+++++|++||+++++++.++ ++|++.++++.|||++|++.++ ..|..+... ....|..++..|
T Consensus 35 ~~~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~~~~~~~-~~~~~~~~~~~C 111 (335)
T PHA03087 35 GYDTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYY-ILFQWSFGEFAC 111 (335)
T ss_pred cccchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHHHHHHHH-hCCCCCCCcHHH
Confidence 4456678889999999999999999999998887 8899999999999999998855 466555333 346788899999
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCcc-
Q psy5093 126 DSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKC- 204 (662)
Q Consensus 126 ~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c- 204 (662)
++..++......+|.+++++||+|||++|++|++|+...+.+++..+++++|+++++.++|+...+....... ...|
T Consensus 112 ~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~~--~~~C~ 189 (335)
T PHA03087 112 KIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDHE--TLICC 189 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccCC--CceEE
Confidence 9999999999999999999999999999999999999999999999999999999999998877654432222 2233
Q ss_pred ccCCCc--chh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCC
Q psy5093 205 PFTDSK--GYL----IFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHM 278 (662)
Q Consensus 205 ~~~~~~--~~~----~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (662)
...... .+. ....++.+++|.++++++|.+|.+.++++.++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~~--------------------------------- 236 (335)
T PHA03087 190 MFYNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINKS--------------------------------- 236 (335)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------------------------------
Confidence 222211 111 12345668899999999999998887654220
Q ss_pred ccCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHH
Q psy5093 279 TLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLL 358 (662)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~ 358 (662)
++++|++|++.++++.|++||+|+.+..++
T Consensus 237 --------------------------------------------------~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~ 266 (335)
T PHA03087 237 --------------------------------------------------KKNKKAIKLVLIIVILFVIFWLPFNVSVFV 266 (335)
T ss_pred --------------------------------------------------hhcchHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 156688999999999999999999998776
Q ss_pred HHhhccccCC----CchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCCc
Q psy5093 359 SAVCTKCFWS----EQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISP 414 (662)
Q Consensus 359 ~~~~~~~~~~----~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~~ 414 (662)
.......... ......+..+...+..+|+++||+||++++++||+++|++++...+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~~~~~ 326 (335)
T PHA03087 267 YSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLKLMFT 326 (335)
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHHHHhh
Confidence 5432111101 1122345567788999999999999999999999998888755443
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.97 E-value=2e-30 Score=253.65 Aligned_cols=253 Identities=35% Similarity=0.596 Sum_probs=213.5
Q ss_pred hhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHHHHhhHHHHHHHHHHHHHHH
Q psy5093 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVIS 147 (662)
Q Consensus 68 gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia 147 (662)
||+++++++.++|++|++.++|++|||++|++.++...|....... .+.|..++..|++..++..+....+.+++++++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~-~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is 79 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLL-FDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAIS 79 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999999998887775554443 367888999999999999999999999999999
Q ss_pred HHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccCCCc----chhhhhHHHHHHH
Q psy5093 148 LDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSK----GYLIFSSTISFYL 223 (662)
Q Consensus 148 idRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~----~~~~~~~~~~~~i 223 (662)
+|||++|++|.+|++..+++++..+++++|+++++.++|+.+..............|...... .+.....++.+++
T Consensus 80 ~dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~ 159 (257)
T PF00001_consen 80 IDRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSSSQIYFIYFFIVFFIL 159 (257)
T ss_dssp HHHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSHHHHHHHHHHHHHTHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999988755444433335677665543 3667778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCCCCCCccccccccccCCCcccc
Q psy5093 224 PLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQ 303 (662)
Q Consensus 224 p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (662)
|+++++++|.+|++.++++.++.+....
T Consensus 160 p~~~~~~~~~~i~~~~~~~~~~~~~~~~---------------------------------------------------- 187 (257)
T PF00001_consen 160 PLIIILICYIRILRKLRRQRKRIKSQSS---------------------------------------------------- 187 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTCCHTS----------------------------------------------------
T ss_pred ceeeeeeecccccccccccccccccccc----------------------------------------------------
Confidence 9999999999999999998875432110
Q ss_pred ccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccCCCchhHHHHHHHHHHH
Q psy5093 304 VSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLG 383 (662)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 383 (662)
+..+++.++++|.++++.+++++|++||+|+.+..++....+.. .. .......+..++.
T Consensus 188 ------------------~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~--~~-~~~~~~~~~~~l~ 246 (257)
T PF00001_consen 188 ------------------SSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSS--SL-ISSILFYISYFLA 246 (257)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTS--TC-SHHHHHHHHHHHH
T ss_pred ------------------cccccccccccccccccccccccccccCCceeHHHHHHHHcCcc--ch-hhHHHHHHHHHHH
Confidence 22334455899999999999999999999999999988876543 11 5778889999999
Q ss_pred Hhhccccchhh
Q psy5093 384 WINSGMNPVIY 394 (662)
Q Consensus 384 ~~ns~~nP~IY 394 (662)
++|+++||+||
T Consensus 247 ~~~s~~nP~iY 257 (257)
T PF00001_consen 247 FLNSCLNPIIY 257 (257)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhhCcEEC
Confidence 99999999998
No 9
>KOG4220|consensus
Probab=99.94 E-value=2.9e-26 Score=216.29 Aligned_cols=294 Identities=22% Similarity=0.312 Sum_probs=178.4
Q ss_pred hhhHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCCcccccCCccccccee
Q psy5093 349 WLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPVVFLLPMCMYPQYL 428 (662)
Q Consensus 349 ~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~~~~~~y~~~~~~~~~ 428 (662)
-+|.+..+++....+- ......+......++.-.|++|-+|..+ -|.|+-- +...|+-.++.+++
T Consensus 83 SMnl~t~Y~lmg~W~L----G~~~CdlWLalDYvaSNASVmNLLiISF---------DRYFsVT--rPLtYrakRTtkrA 147 (503)
T KOG4220|consen 83 SMNLYTTYTLMGYWPL----GPLVCDLWLALDYVASNASVMNLLIISF---------DRYFSVT--RPLTYRAKRTTKRA 147 (503)
T ss_pred echHHHHHHHHccccc----chHHHHHHHHHHHHhhhhhhhhhheeee---------ecceeec--ccccccccccchHH
Confidence 4677666666544321 1122223344455555667777777654 2223332 33469999999999
Q ss_pred eeehhhHHHHHHhhchhhhhhcccccC-CccCCCCc--eecCCchhHhhhhhHHHHHhHHHHHHHHHHHHHHHHHhhhcc
Q psy5093 429 VLISLCYYVTTLVLTAPAILWWRAVRN-EEVPKNKC--PFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSL 505 (662)
Q Consensus 429 ~~~~~~~w~~~~~~~~p~~~~~~~~~~-~~~~~~~C--~~~~~~~y~~~~~~~~f~lP~~ii~~~Y~~I~~~~~~~~~~~ 505 (662)
.++++++|+++++++.|.+++|....+ ...+..+| .|.++.+...-..+..|.+|..||.+.|.|||+..+++.+..
T Consensus 148 ~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~iQFlsnp~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~ 227 (503)
T KOG4220|consen 148 GLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECYIQFLSNPAITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKEL 227 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCCceEEEeecCceeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998754 34566789 566677777888899999999999999999999999877654
Q ss_pred ccCcccc------cCCCCC-------Cccc-ccc--------------cccCCCCCCC----CCcccCCCCC--------
Q psy5093 506 KVGTKQV------MSGSTS-------GEKE-LTL--------------RIHRGGTDHR----HMTLHHTPSD-------- 545 (662)
Q Consensus 506 ~~~~~~~------~~~~~~-------~~~~-~~~--------------~~~~~~~~~~----~~~~~~~~~~-------- 545 (662)
...+... ...... +.++ ... ...+...+.+ +..++.++..
T Consensus 228 ~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~~p~~~~~~~~~~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~ 307 (503)
T KOG4220|consen 228 AKLQASLPSFSAIKLSPESPKGDSKSSGRSSPSEEGKREPLTNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSP 307 (503)
T ss_pred hhcccccccccccccCcccccccccCCCCCCCccccccccCCCCccccccCcccCCccCCCCccccccccccccccccCC
Confidence 4322211 000000 0000 000 0000000000 0000000000
Q ss_pred --Ccccc--------ccccC----------CCC---cc--------ccc---C----Cccc-----ccccccc-------
Q psy5093 546 --DVEMD--------NVMSG----------HNG---IT--------RQV---S----NTRI-----IHKGHIV------- 575 (662)
Q Consensus 546 --~~~~~--------~~~~~----------~~~---~~--------~~~---~----~~~~-----~~~~~~~------- 575 (662)
+...+ ..+.+ .+. .+ .+. + ++.. ..+....
T Consensus 308 ~~~~~se~~~~~~v~~~~~~~~~~~D~~~~~~~i~i~~~~~~p~s~sc~p~~~~t~~~~~s~~ns~~gk~r~~~~~~~~~ 387 (503)
T KOG4220|consen 308 LERPGSELSEIEAVVAKMPANQRKVDEEGLNTLIQIPTDQMLPKSDSCVPIFSATDTDKTTDTNSGAGKRRAGPVARKTG 387 (503)
T ss_pred ccccccccccccceeccCCCCcCCCCccccccccccccccCCCCCCcccccccccccccCCccCccccccccCccccccc
Confidence 00000 00000 000 00 000 0 0000 0000000
Q ss_pred --------cc--cchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHh
Q psy5093 576 --------KN--FSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWIN 645 (662)
Q Consensus 576 --------~~--~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~n 645 (662)
+. ....+++....+|+|++|++..+++.|++||.||+|+.++..||++|. +..++.++.||.|.|
T Consensus 388 ~~~kkf~~~~r~q~~k~k~~~~~rErKAAkTLsAILlAFIiTWtPYNImVlv~tFC~~Ci-----P~tlW~~gYwLCYIN 462 (503)
T KOG4220|consen 388 LDYKKFAKRARSQSRKKKKMSLVRERKAAKTLSAILLAFILTWTPYNIMVLVNTFCKNCI-----PETLWTFGYWLCYIN 462 (503)
T ss_pred hhhhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHcccceeeeehHhhccccc-----chhHhhhhhheeeec
Confidence 00 111122223478999999999999999999999999999999998875 778889999999999
Q ss_pred hhhhHHHHHhccccccC
Q psy5093 646 SGMNPVIYACWSRDFRR 662 (662)
Q Consensus 646 s~iNPiiY~~~~~~fR~ 662 (662)
|.+||+.|+++|..||+
T Consensus 463 STiNP~CYALCNatFrk 479 (503)
T KOG4220|consen 463 STINPLCYALCNATFRK 479 (503)
T ss_pred ccccHHHHHHHhHHHHH
Confidence 99999999999999995
No 10
>KOG2087|consensus
Probab=99.90 E-value=8.9e-25 Score=205.30 Aligned_cols=274 Identities=20% Similarity=0.308 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccc------cccccccc
Q psy5093 51 RTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDH------NWIFGLNW 124 (662)
Q Consensus 51 ~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~------~~~~~~~~ 124 (662)
..++-+...++.+++++||.+|+......+...++..+++.|||.+|++.++....+...+....+ .|..+...
T Consensus 24 ~~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~g 103 (363)
T KOG2087|consen 24 YWILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLG 103 (363)
T ss_pred cceeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCC
Confidence 455667778899999999999999998888877899999999999999998876655555443322 23346678
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCcc
Q psy5093 125 CDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKC 204 (662)
Q Consensus 125 C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c 204 (662)
|++.+|+..+..-.|++.++.+++||++.|++|++-++....+....+++..|+.+++.++.|.++...+. ....|
T Consensus 104 C~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y~----~~~vC 179 (363)
T KOG2087|consen 104 CPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSYG----ASSVC 179 (363)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCCCc----cccee
Confidence 99999999999999999999999999999999999888888888999999999999999999998743332 22344
Q ss_pred -cc----CCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCc
Q psy5093 205 -PF----TDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMT 279 (662)
Q Consensus 205 -~~----~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (662)
+. .....|....++....+.++++.++|++++..+++.......
T Consensus 180 lPL~~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~~~------------------------------- 228 (363)
T KOG2087|consen 180 LPLHIEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSATL------------------------------- 228 (363)
T ss_pred eecccCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCcccc-------------------------------
Confidence 22 222226667777888889999999999999887653221100
Q ss_pred cCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy5093 280 LHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLS 359 (662)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~ 359 (662)
...+.+|-+..+++.-.+||.|..++.+..
T Consensus 229 --------------------------------------------------~~~~~akr~a~LvfTd~icw~Pi~f~~~~a 258 (363)
T KOG2087|consen 229 --------------------------------------------------ISTSVAKRMAFLVFTDCICWCPIAFFKFSA 258 (363)
T ss_pred --------------------------------------------------chhhhhhCeeEEEEccccccCchheeeeHH
Confidence 223677888889999999999999999888
Q ss_pred HhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCC
Q psy5093 360 AVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKIS 413 (662)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~ 413 (662)
.++...... .....+..++.-+|+++||++|.+.++.||+.++.+..|..
T Consensus 259 l~~~~li~~----~~sk~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~k~~ 308 (363)
T KOG2087|consen 259 LIGVELISV----SYSKWLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLSKVG 308 (363)
T ss_pred hcCCcccCh----hhceeEEEEEEEcccccCchhHHHcCHHHHHHHHHHHhhcc
Confidence 775432211 11112233445589999999999999999999888876653
No 11
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.86 E-value=1.5e-21 Score=187.39 Aligned_cols=254 Identities=19% Similarity=0.221 Sum_probs=184.7
Q ss_pred HHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHHHHhhHHHHHHHHHH
Q psy5093 63 LVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILN 142 (662)
Q Consensus 63 i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~ 142 (662)
++|++||+.+++.+.++|++|++.++++..+|++|++.++..+|... ..+ . +.......|-...+...++.......
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~-~~~-~-~~~i~~~~Cf~~~~~~~f~~~~qs~~ 78 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFML-FLF-R-DHQITRSECFWQIFFYIFFQCAQSVI 78 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHH-HHH-h-heeccHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999887777433 222 2 23446667999999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccCC--CcchhhhhHHHH
Q psy5093 143 LCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTD--SKGYLIFSSTIS 220 (662)
Q Consensus 143 l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~--~~~~~~~~~~~~ 220 (662)
+.+|++||++||+.|.+|++..+.+..........+.+....+. +....++.....|.... ............
T Consensus 79 ~l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~~-----~~~~~~~~~~~~C~pp~a~~~~~~~~~~~~~ 153 (257)
T PF10320_consen 79 MLAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFTVI-----GFLYRDDETIVICNPPLAFHGTASQIWSYSN 153 (257)
T ss_pred HHHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHHhh-----eeEecCCcccccCCCccccCccHHHHHHHHH
Confidence 99999999999999999999888885555545544444443322 22222333455664332 222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCCCCCCccccccccccCCCc
Q psy5093 221 FYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGI 300 (662)
Q Consensus 221 ~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (662)
.++ -+++++.|...+..++++.++.
T Consensus 154 ~~i-nv~tvivY~i~~~~~~~k~~~~------------------------------------------------------ 178 (257)
T PF10320_consen 154 III-NVITVIVYIITIIIFKRKSRSN------------------------------------------------------ 178 (257)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHcccc------------------------------------------------------
Confidence 233 3445677777777776654420
Q ss_pred cccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccCCCchhHHHHHHHH
Q psy5093 301 TRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVT 380 (662)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (662)
..+++|+.|.+..+++.|+.+|.-..+...+....+. +.+....+.....
T Consensus 179 ---------------------------~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~---~~~~~~~i~~~~~ 228 (257)
T PF10320_consen 179 ---------------------------SSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGL---DGETIAIIQMYAG 228 (257)
T ss_pred ---------------------------chhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHH
Confidence 0168899999999999999999887777766654332 2333455677888
Q ss_pred HHHHhhccccchhhhhcChhHHHHHHHhc
Q psy5093 381 WLGWINSGMNPVIYACWSRDFRSKEKILN 409 (662)
Q Consensus 381 ~l~~~ns~~nP~IY~~~~~~fR~~~~~l~ 409 (662)
++..++.+.|.+||.++|+|||+++|++|
T Consensus 229 i~v~~~~s~~ffV~~~~S~EYR~af~~~~ 257 (257)
T PF10320_consen 229 IFVNISYSQNFFVYYWRSSEYRKAFRELF 257 (257)
T ss_pred HHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence 99999999999999999999999999875
No 12
>KOG4219|consensus
Probab=99.84 E-value=3.7e-21 Score=182.91 Aligned_cols=167 Identities=23% Similarity=0.399 Sum_probs=128.3
Q ss_pred cccceeeeehhhHHHHHHhhchhhhhhcccccCCc---cCCCCc---------eecC----CchhHhhhhhHHHHHhHHH
Q psy5093 423 MYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEE---VPKNKC---------PFTD----SKGYLIFSSTISFYLPLLV 486 (662)
Q Consensus 423 ~~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~---~~~~~C---------~~~~----~~~y~~~~~~~~f~lP~~i 486 (662)
.+++...++++++|+.|+++++|..+..+..+.+. .....| .-.. .+.|.....++.+++|++|
T Consensus 145 ~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliV 224 (423)
T KOG4219|consen 145 PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIV 224 (423)
T ss_pred CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHH
Confidence 67888999999999999999999998876553221 112334 1111 1348888889999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCcccccCCc
Q psy5093 487 MVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNT 566 (662)
Q Consensus 487 i~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (662)
+.++|.+|.+++|+.+.....+
T Consensus 225 l~~~Yt~iav~LW~~~~~gd~~---------------------------------------------------------- 246 (423)
T KOG4219|consen 225 LGLAYTVIAVTLWGRRIPGDQQ---------------------------------------------------------- 246 (423)
T ss_pred HHHHHHHHHHHHHhccCccchh----------------------------------------------------------
Confidence 9999999999999754111000
Q ss_pred ccccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhh
Q psy5093 567 RIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINS 646 (662)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns 646 (662)
-++.+..+.++|+.||+++|++.|.+||+||++..++....+... ..+.....+....||++.|+
T Consensus 247 --------------d~~~~~~kak~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~-~~k~i~~vyl~~~WLaMSst 311 (423)
T KOG4219|consen 247 --------------DRKHEQLKAKKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEIN-RKKFIQQVYLAIYWLAMSST 311 (423)
T ss_pred --------------chhhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 022334568889999999999999999999999999987655322 33556677888999999999
Q ss_pred hhhHHHHHhccccccC
Q psy5093 647 GMNPVIYACWSRDFRR 662 (662)
Q Consensus 647 ~iNPiiY~~~~~~fR~ 662 (662)
|.||+||+++|++||.
T Consensus 312 ~yNPiIY~~lN~Rfr~ 327 (423)
T KOG4219|consen 312 CYNPIIYCFLNKRFRG 327 (423)
T ss_pred hhccHhhhhhHHHHHH
Confidence 9999999999999983
No 13
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.84 E-value=1.4e-19 Score=181.03 Aligned_cols=147 Identities=21% Similarity=0.315 Sum_probs=103.8
Q ss_pred eehhhHHHHHHhhchhhhhhcccccCCccCCCCceecC--CchhHhh------hhhHHHHHhHHHHHHHHHHHHHHHHHh
Q psy5093 430 LISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTD--SKGYLIF------SSTISFYLPLLVMVFTYFKIYRAAVVQ 501 (662)
Q Consensus 430 ~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~--~~~y~~~------~~~~~f~lP~~ii~~~Y~~I~~~~~~~ 501 (662)
..+.++|+.+++.++|.++...... .+.+...|.... +..|..+ ..++.|++|+++|++||.+|.++++++
T Consensus 149 ~~i~~~Wi~s~l~~~P~l~~~~~~~-~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~ 227 (338)
T PHA03234 149 RNIGILFLASAMCAIPAALFVKTEG-KKGNYGKCNIHISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHAL 227 (338)
T ss_pred HHHHHHHHHHHHHHhhHhHeeeeee-cCCCCCcCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456679999999999876544321 111224684322 2233222 223357899999999999999888642
Q ss_pred hhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCcccccCCcccccccccccccchh
Q psy5093 502 TKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLS 581 (662)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (662)
..
T Consensus 228 ~~------------------------------------------------------------------------------ 229 (338)
T PHA03234 228 TE------------------------------------------------------------------------------ 229 (338)
T ss_pred hh------------------------------------------------------------------------------
Confidence 10
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhc-----ccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhc
Q psy5093 582 RKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCT-----KCFWSEQDEELISAVVTWLGWINSGMNPVIYACW 656 (662)
Q Consensus 582 ~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~ 656 (662)
++++|++|++++++++|++||+||++..++..+.. +|. .....+..+.++.+|+++|||+||+||++.
T Consensus 230 ------~~~~k~~k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~-~~~~~~~~~~v~~~La~~nsclNPiIY~f~ 302 (338)
T PHA03234 230 ------KKHKKTLFFIRILILSFLCIQIPNIAILICEIAFLYIANNSCF-GLAQREILQIIIRLMPEIHCFSNPLVYAFT 302 (338)
T ss_pred ------hhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcch-HHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Confidence 24678999999999999999999999987755421 121 112234567888999999999999999999
Q ss_pred cccccC
Q psy5093 657 SRDFRR 662 (662)
Q Consensus 657 ~~~fR~ 662 (662)
+++||+
T Consensus 303 ~~~FR~ 308 (338)
T PHA03234 303 GGDFRL 308 (338)
T ss_pred hHHHHH
Confidence 999995
No 14
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.83 E-value=4.5e-19 Score=181.22 Aligned_cols=154 Identities=17% Similarity=0.277 Sum_probs=111.0
Q ss_pred ccceeeeehhhHHHHHHhhchhhhhhcccc--cC---CccCCCCceecC--Cc------hhHhhhhhHHHHHhHHHHHHH
Q psy5093 424 YPQYLVLISLCYYVTTLVLTAPAILWWRAV--RN---EEVPKNKCPFTD--SK------GYLIFSSTISFYLPLLVMVFT 490 (662)
Q Consensus 424 ~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~--~~---~~~~~~~C~~~~--~~------~y~~~~~~~~f~lP~~ii~~~ 490 (662)
+++.+.+++++.|+.++++.+|+.+..... .+ ...+...|.... +. .|.+...++.|++|+++|++|
T Consensus 144 ~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~ 223 (409)
T PHA03235 144 AYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWF 223 (409)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCcceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777788999999999999976543211 11 112345684321 11 244556667799999999999
Q ss_pred HHHHHHHHHHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCcccccCCccccc
Q psy5093 491 YFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIH 570 (662)
Q Consensus 491 Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (662)
|.+|+++++++.+
T Consensus 224 Y~~I~~~l~~~~~------------------------------------------------------------------- 236 (409)
T PHA03235 224 YTFFYRTLKRASY------------------------------------------------------------------- 236 (409)
T ss_pred HHHHHHHHHhhhh-------------------------------------------------------------------
Confidence 9999999886432
Q ss_pred ccccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhc-----ccccCCcchhHHHHHHHHHHHHh
Q psy5093 571 KGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCT-----KCFWSEQDEELISAVVTWLGWIN 645 (662)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~n 645 (662)
++++|+.+++++++++|++||+||+++.++..+.. .+. .......+..++.+|+++|
T Consensus 237 -----------------~~~~k~~~~v~iivv~F~iCWlPy~v~~l~~~~~~~~~~~~~~-~~~~~~~~~~i~~~La~~n 298 (409)
T PHA03235 237 -----------------KKRSRTLTFVCILLLSFLCLQTPFVAIMIFDSYATLIWPSDCE-HINLRDAVSTLSRLVPNLH 298 (409)
T ss_pred -----------------hcchhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCch-hhhHHHHHHHHHHHHHHHH
Confidence 12456778899999999999999999988865432 111 1123445677889999999
Q ss_pred hhhhHHHHHhccccccC
Q psy5093 646 SGMNPVIYACWSRDFRR 662 (662)
Q Consensus 646 s~iNPiiY~~~~~~fR~ 662 (662)
||+||+||++++++||+
T Consensus 299 s~lNPiIY~~~~~~FRk 315 (409)
T PHA03235 299 CLLNPILYAFLGNDFLK 315 (409)
T ss_pred HhHhHHHHHHhhHHHHH
Confidence 99999999999999995
No 15
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.83 E-value=2.8e-19 Score=179.59 Aligned_cols=278 Identities=21% Similarity=0.217 Sum_probs=202.7
Q ss_pred HHHHHHHHhhHhhhhheeccccccc-hhhHHHHHHHHHHHhhhhhcccHHHHHhhcc--cc--c----cccccchhHHHH
Q psy5093 60 LFSLVTVFGNALVMIAVVRERYLHT-STNYFIMSLALADCLVGLVVMPFSALYELLD--HN--W----IFGLNWCDSWRS 130 (662)
Q Consensus 60 ii~i~gl~gN~~vi~~i~~~~~lr~-~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~--~~--~----~~~~~~C~~~~~ 130 (662)
++.++|+++|++-++++.| |.+|+ +.|.+++++|++|++..+..++......... .. . ........+...
T Consensus 5 ~~~~~g~~~N~~h~~VLtr-k~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~ 83 (318)
T PF10324_consen 5 ILSIFGLFINIFHLIVLTR-KSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMES 83 (318)
T ss_pred EEeHHHHHHHHHHhhhcCC-hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHH
Confidence 3568999999999776655 67776 8999999999999999887776544333322 11 1 111122345577
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCC--CccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccC--CCCCCccc-
Q psy5093 131 LDVLFSTASILNLCVISLDRYWAITDPLTY--PSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNE--EVPKNKCP- 205 (662)
Q Consensus 131 ~~~~~~~~s~~~l~~iaidRy~~I~~P~~y--~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~--~~~~~~c~- 205 (662)
+...+...|.|..++||+.|++++.+|++. +...+++.+..++.++++++.+...+..+........ -.+...|.
T Consensus 84 l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~ 163 (318)
T PF10324_consen 84 LSDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSG 163 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceee
Confidence 888999999999999999999999999864 3456788888889999999999999888765544322 11233453
Q ss_pred cC---CCc-------------------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCcc
Q psy5093 206 FT---DSK-------------------GYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKE 263 (662)
Q Consensus 206 ~~---~~~-------------------~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 263 (662)
.. ... .+..+..++.-++|.++..+..+.+.+.+|+.+++.++..++.
T Consensus 164 ~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~~---------- 233 (318)
T PF10324_consen 164 FPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSSK---------- 233 (318)
T ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcccccc----------
Confidence 10 000 0112223344688999999999999999998777544322110
Q ss_pred ceeeeccCCCCCCCCccCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHH
Q psy5093 264 LTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMG 343 (662)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 343 (662)
.+++.+.+++++.+++
T Consensus 234 ----------------------------------------------------------------~~~~~~tt~li~~~ti 249 (318)
T PF10324_consen 234 ----------------------------------------------------------------SKKSDRTTKLILFMTI 249 (318)
T ss_pred ----------------------------------------------------------------cccccchHHHHHHHHH
Confidence 1156788999999999
Q ss_pred HHHhhhhhHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccC
Q psy5093 344 VFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKI 412 (662)
Q Consensus 344 ~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~ 412 (662)
.|+++.+|..+..++.....+..........+..+...+..+|+..|++||+.++.+||+++|++++++
T Consensus 250 ~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f~~k 318 (318)
T PF10324_consen 250 SFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKLFGCK 318 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHhccC
Confidence 999999999999999876443222234455677888899999999999999999999999999998763
No 16
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.79 E-value=3.6e-18 Score=171.08 Aligned_cols=151 Identities=19% Similarity=0.396 Sum_probs=106.4
Q ss_pred ceeeeehhhHHHHHHhhchhhhhhcccccCCccCCCCceecC---C-chh---HhhhhhHHHHHhHHHHHHHHHHHHHHH
Q psy5093 426 QYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTD---S-KGY---LIFSSTISFYLPLLVMVFTYFKIYRAA 498 (662)
Q Consensus 426 ~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~---~-~~y---~~~~~~~~f~lP~~ii~~~Y~~I~~~~ 498 (662)
+...+++.+.|+.+++.++|+.+++.... ..+...|.+.. + .++ .....+..|++|+++|+++|.+|++.+
T Consensus 139 ~~~~~~i~~iWi~s~l~~~P~~~~~~~~~--~~~~~~C~~~~~~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l 216 (323)
T PHA02834 139 SLSVLLSVAAWVCSVILSMPAMVLYYVDN--TDNLKQCIFNDYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTL 216 (323)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHhcc--CCCceEEeccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678899999999999887654321 11234674321 1 112 223346789999999999999999988
Q ss_pred HHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCcccccCCccccccccccccc
Q psy5093 499 VVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNF 578 (662)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (662)
+++.+
T Consensus 217 ~~~~~--------------------------------------------------------------------------- 221 (323)
T PHA02834 217 KNCKN--------------------------------------------------------------------------- 221 (323)
T ss_pred HhccC---------------------------------------------------------------------------
Confidence 76421
Q ss_pred chhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCC-----cchhHHHHHHHHHHHHhhhhhHHHH
Q psy5093 579 SLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSE-----QDEELISAVVTWLGWINSGMNPVIY 653 (662)
Q Consensus 579 ~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~ns~iNPiiY 653 (662)
++++|++|++++++++|++||+||++..++..+.+...... ........++.+++++|||+||+||
T Consensus 222 ---------~~~~k~~k~~~~vv~~F~icWlPy~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY 292 (323)
T PHA02834 222 ---------KNKTRSIKIILTVVTFTVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIY 292 (323)
T ss_pred ---------cccceEEeehhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHH
Confidence 12457789999999999999999999998876543211000 1111234578899999999999999
Q ss_pred HhccccccC
Q psy5093 654 ACWSRDFRR 662 (662)
Q Consensus 654 ~~~~~~fR~ 662 (662)
++++++||+
T Consensus 293 ~~~~~~fR~ 301 (323)
T PHA02834 293 AFVGKNFKK 301 (323)
T ss_pred HHhcHHHHH
Confidence 999999995
No 17
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.77 E-value=2.3e-17 Score=169.57 Aligned_cols=157 Identities=17% Similarity=0.383 Sum_probs=111.4
Q ss_pred ccccceeeeehhhHHHHHHhhchhhhhhccccc------CCc--cCCCCceecC--Cc--------hhHhhhhhHHHHHh
Q psy5093 422 CMYPQYLVLISLCYYVTTLVLTAPAILWWRAVR------NEE--VPKNKCPFTD--SK--------GYLIFSSTISFYLP 483 (662)
Q Consensus 422 ~~~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~------~~~--~~~~~C~~~~--~~--------~y~~~~~~~~f~lP 483 (662)
.++.+...++++..|+.++++++|+.+..+... +.+ .....|.... +. .+.+...+++|++|
T Consensus 206 ~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lP 285 (417)
T PHA02638 206 YRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQCTLIEDNEKNNISFLGRILQFEINILGMFIP 285 (417)
T ss_pred eecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCCeeeeeccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 344555667888999999999999988654321 111 1234673221 11 12333456778999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCccccc
Q psy5093 484 LLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQV 563 (662)
Q Consensus 484 ~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (662)
+++|++||.+|++++++..+
T Consensus 286 l~vmi~cY~~I~~~L~~~~~------------------------------------------------------------ 305 (417)
T PHA02638 286 IIIFAFCYIKIILKLKQLKK------------------------------------------------------------ 305 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhc------------------------------------------------------------
Confidence 99999999999998865321
Q ss_pred CCcccccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhccccc---------CCcchhHH
Q psy5093 564 SNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFW---------SEQDEELI 634 (662)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~---------~~~~~~~~ 634 (662)
++++|++|++++++++|++||+||++..++..+...... .....+.+
T Consensus 306 ------------------------~~k~k~~rli~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~ 361 (417)
T PHA02638 306 ------------------------SKKTKSIIIVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYA 361 (417)
T ss_pred ------------------------cccchhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHH
Confidence 135677899999999999999999999988765421000 01123455
Q ss_pred HHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093 635 SAVVTWLGWINSGMNPVIYACWSRDFRR 662 (662)
Q Consensus 635 ~~~~~~l~~~ns~iNPiiY~~~~~~fR~ 662 (662)
..++.+++++|||+||+||++.+++|||
T Consensus 362 ~~vt~~la~~~sclNPiIY~f~~~~FR~ 389 (417)
T PHA02638 362 MMLAEAISLTHCCINPLIYTLIGENFRM 389 (417)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhCHHHHH
Confidence 6778899999999999999999999996
No 18
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.73 E-value=1.9e-16 Score=154.73 Aligned_cols=268 Identities=16% Similarity=0.133 Sum_probs=186.9
Q ss_pred HHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhcccccccccc-chhHHHHhhHHHHHH
Q psy5093 60 LFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLN-WCDSWRSLDVLFSTA 138 (662)
Q Consensus 60 ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~~~ 138 (662)
++.++|++.|.++++.+.+.+++|++.+.+..+.|++|.+.+++.+. +.......+.....+. .-.+.+.........
T Consensus 2 ~~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~-~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~ 80 (274)
T PF10328_consen 2 LISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLF-WVVPMTLLDISFLPSSLNSIIFGFIGMFCYFI 80 (274)
T ss_pred eeeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcccccCchHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999876443 3333222222222222 234457888888889
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccC---CCcchhhh
Q psy5093 139 SILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFT---DSKGYLIF 215 (662)
Q Consensus 139 s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~---~~~~~~~~ 215 (662)
+.++.++||++|++||..|.+|++..+.+.+..++++.|++++....+..+..+.......+...-..+ .-..+...
T Consensus 81 ~~~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~~~~~~C~~~~~~ 160 (274)
T PF10328_consen 81 GPLSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSYPTDPPCGNYSWY 160 (274)
T ss_pred HHHHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeecCCCCccchhhhH
Confidence 999999999999999999999999999999999999999999977766655433221111111110101 11112222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCCCCCCccccccccc
Q psy5093 216 SSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMS 295 (662)
Q Consensus 216 ~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (662)
.......+-.+++.++++.+..++++.+++..
T Consensus 161 ~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~~------------------------------------------------ 192 (274)
T PF10328_consen 161 FDFYKNFILVIISNILNIITFIKLRKFRKKIS------------------------------------------------ 192 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc------------------------------------------------
Confidence 23333444466777788888888888766531
Q ss_pred cCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccCCCchhHHH
Q psy5093 296 GHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELI 375 (662)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~ 375 (662)
......++++++|.+..+........|++.++-+.+...+. +...+.
T Consensus 193 -----------------------~~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~~----------~~~~~~ 239 (274)
T PF10328_consen 193 -----------------------VSSSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPLS----------SNRWWQ 239 (274)
T ss_pred -----------------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------cccHHH
Confidence 01112334455899999999999999999887766664442 113334
Q ss_pred HHHHHHHHHhhccccchhhhhcChhHHHHHHHhc
Q psy5093 376 SAVVTWLGWINSGMNPVIYACWSRDFRSKEKILN 409 (662)
Q Consensus 376 ~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~ 409 (662)
+..+.....+.+++|++|+...|+|+|+.+++..
T Consensus 240 F~~~t~~w~~~h~~DG~i~l~fN~~~r~~~~~~~ 273 (274)
T PF10328_consen 240 FFCTTFSWVLVHALDGLIMLIFNSEIRRKIRKKK 273 (274)
T ss_pred HHHHHHHHHHHHHhcceeEeEEcHHHHHHHHhcc
Confidence 4455555677888999999999999999987654
No 19
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.71 E-value=4.5e-16 Score=157.85 Aligned_cols=160 Identities=23% Similarity=0.338 Sum_probs=114.0
Q ss_pred cCCcccccceeeeehhhHHHHHHhhchhhhhhcccccCCccCCCCceecCC---chh----HhhhhhHHHHHhHHHHHHH
Q psy5093 418 LLPMCMYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTDS---KGY----LIFSSTISFYLPLLVMVFT 490 (662)
Q Consensus 418 ~y~~~~~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~---~~y----~~~~~~~~f~lP~~ii~~~ 490 (662)
.|...++.++..+++.++|+.+++..+|+...+....+. +...|..... ..+ .+...++.+++|+++++++
T Consensus 145 ~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~--~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~ 222 (335)
T PHA03087 145 KSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDH--ETLICCMFYNNKTMNWKLFINFEINIIGMLIPLTILLYC 222 (335)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccC--CCceEEecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567778888889999999999999988876554322 2345632221 111 1223456789999999999
Q ss_pred HHHHHHHHHHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCcccccCCccccc
Q psy5093 491 YFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIH 570 (662)
Q Consensus 491 Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (662)
|.+|++.++++.++
T Consensus 223 y~~i~~~l~~~~~~------------------------------------------------------------------ 236 (335)
T PHA03087 223 YSKILITLKGINKS------------------------------------------------------------------ 236 (335)
T ss_pred HHHHHHHHHhcccc------------------------------------------------------------------
Confidence 99998887654210
Q ss_pred ccccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccC----CcchhHHHHHHHHHHHHhh
Q psy5093 571 KGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWS----EQDEELISAVVTWLGWINS 646 (662)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~----~~~~~~~~~~~~~l~~~ns 646 (662)
++++|++|++.+++++|++||+|+.+..++..+....... .........++.+++.+||
T Consensus 237 -----------------~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns 299 (335)
T PHA03087 237 -----------------KKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHC 299 (335)
T ss_pred -----------------hhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 2466889999999999999999999988776432110000 1122344567888999999
Q ss_pred hhhHHHHHhccccccC
Q psy5093 647 GMNPVIYACWSRDFRR 662 (662)
Q Consensus 647 ~iNPiiY~~~~~~fR~ 662 (662)
|+||+||++++++||+
T Consensus 300 ~~NPiIY~~~~~~fr~ 315 (335)
T PHA03087 300 CINPLIYAFVSEFFNK 315 (335)
T ss_pred hhhhhHHHHcCHHHHH
Confidence 9999999999999995
No 20
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.68 E-value=4.4e-15 Score=144.89 Aligned_cols=163 Identities=25% Similarity=0.480 Sum_probs=125.8
Q ss_pred cCCcccccceeeeehhhHHHHHHhhchhhhhhcccccCCccCCCCceecCCc----hhHhhhhhHHHHHhHHHHHHHHHH
Q psy5093 418 LLPMCMYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTDSK----GYLIFSSTISFYLPLLVMVFTYFK 493 (662)
Q Consensus 418 ~y~~~~~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~----~y~~~~~~~~f~lP~~ii~~~Y~~ 493 (662)
.|+..++++....+++..|+.+++..+|+.+..............|...... .|.....+..+++|+++++++|.+
T Consensus 91 ~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 170 (257)
T PF00001_consen 91 RYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSSSQIYFIYFFIVFFILPLIIILICYIR 170 (257)
T ss_dssp THHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccc
Confidence 3445556777888899999999999999987754433222224568554432 477888888999999999999999
Q ss_pred HHHHHHHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCcccccCCcccccccc
Q psy5093 494 IYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGH 573 (662)
Q Consensus 494 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (662)
|++.++++.++......
T Consensus 171 i~~~~~~~~~~~~~~~~--------------------------------------------------------------- 187 (257)
T PF00001_consen 171 ILRKLRRQRKRIKSQSS--------------------------------------------------------------- 187 (257)
T ss_dssp HHHHHHHHHHCTCCHTS---------------------------------------------------------------
T ss_pred ccccccccccccccccc---------------------------------------------------------------
Confidence 99999998876432110
Q ss_pred cccccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHH
Q psy5093 574 IVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIY 653 (662)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY 653 (662)
...+.+.++++|.++++++++++|++||+|+.+..++....+.. +. .......++.++.++||++||+||
T Consensus 188 -------~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~--~~-~~~~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 188 -------SSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSS--SL-ISSILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTS--TC-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------cccccccccccccccccccccccccccCCceeHHHHHHHHcCcc--ch-hhHHHHHHHHHHHHHHHhhCcEEC
Confidence 12233446788999999999999999999999999998877643 11 577888999999999999999999
No 21
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=99.65 E-value=4e-14 Score=138.88 Aligned_cols=285 Identities=12% Similarity=0.111 Sum_probs=189.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHhhhhheeccc---cccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccch
Q psy5093 49 QQRTLLVSTLSLFSLVTVFGNALVMIAVVRER---YLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWC 125 (662)
Q Consensus 49 ~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~---~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C 125 (662)
..+.+..++..+..++|++||++++++...+. +.-++.+..+.+||+++++...+... ..............+..+
T Consensus 4 ~~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (303)
T PF05296_consen 4 SLEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILL-NSFLSFFFPNIYFSENVY 82 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcchhhhhhhHH
Confidence 34567788889999999999999988876432 22359999999999999998665443 233333333444466678
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCC-Cccccc---hhhhHHHHHHHHHHHhhhhhHHHhhhcccc----C
Q psy5093 126 DSWRSLDVLFSTASILNLCVISLDRYWAITDPLTY-PSRMST---RRAYIWIAIVWICSGGISFPAILWWRAVRN----E 197 (662)
Q Consensus 126 ~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y-~~~~t~---~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~----~ 197 (662)
+...++..+....|.|..+++++.-++.|+...+. -.++++ +.+..++.+.++++++..++....+..... .
T Consensus 83 ~~~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~~~~~~ 162 (303)
T PF05296_consen 83 KIIDFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFIDNHINNNNTN 162 (303)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccccc
Confidence 89999999999999999999999999999875321 111121 223345566667777333333333322111 1
Q ss_pred CCCCCccccCCCcc---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCC
Q psy5093 198 EVPKNKCPFTDSKG---YLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTD 274 (662)
Q Consensus 198 ~~~~~~c~~~~~~~---~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (662)
...+.......... +......+..++|+++++++...+...++||.|+++.......+.
T Consensus 163 ~~~N~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~p------------------ 224 (303)
T PF05296_consen 163 NSRNSTSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDP------------------ 224 (303)
T ss_pred CCCcceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC------------------
Confidence 11111111111111 222233478889999999999999999999999887543322111
Q ss_pred CCCCccCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHH
Q psy5093 275 HRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFV 354 (662)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i 354 (662)
+.+++.|++|++....+.|+++++-..+
T Consensus 225 ----------------------------------------------------s~~aH~~a~k~~~sfl~ly~~~~~~~~~ 252 (303)
T PF05296_consen 225 ----------------------------------------------------STEAHIRAIKTMISFLILYIIYFLSLIL 252 (303)
T ss_pred ----------------------------------------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1128899999999888888776654333
Q ss_pred HHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccC
Q psy5093 355 VNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKI 412 (662)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~ 412 (662)
...-... ........+...+..+.+..+|+|..+.|+++|+++++++++.
T Consensus 253 ~~~~~~~--------~~~~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~~~ 302 (303)
T PF05296_consen 253 SFLSFFF--------PENSIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILWCL 302 (303)
T ss_pred HHHHHHh--------ccccHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhc
Confidence 2222211 1133455778889999999999999999999999999988765
No 22
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.58 E-value=1.9e-14 Score=140.14 Aligned_cols=270 Identities=16% Similarity=0.167 Sum_probs=175.0
Q ss_pred HHHHHHhhHhhhhheecccc----ccchhhHHHHHHHHHHHhhhhhcccHHHHHhh--ccc-cccccccchhHHHHhhHH
Q psy5093 62 SLVTVFGNALVMIAVVRERY----LHTSTNYFIMSLALADCLVGLVVMPFSALYEL--LDH-NWIFGLNWCDSWRSLDVL 134 (662)
Q Consensus 62 ~i~gl~gN~~vi~~i~~~~~----lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~--~~~-~~~~~~~~C~~~~~~~~~ 134 (662)
+++.++-.+.+++++.+.|+ .+++.+.++++-+++|++..+........... ..+ -...++..-++.......
T Consensus 5 ~~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~ 84 (283)
T PF10323_consen 5 SIVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYY 84 (283)
T ss_pred EeehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHH
Confidence 34566677777777766554 45899999999999999996654432222221 000 011233335566666777
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCC-CCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccCCCcchh
Q psy5093 135 FSTASILNLCVISLDRYWAITDPL-TYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYL 213 (662)
Q Consensus 135 ~~~~s~~~l~~iaidRy~~I~~P~-~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 213 (662)
.........+++|++||.+|++|. ++.+..++.+.+.++++-|+.+++.++|.+...............-.........
T Consensus 85 ~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~~~~~~~~d~~~~~~~ 164 (283)
T PF10323_consen 85 FLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDNEENMSLFVDPEFIQRN 164 (283)
T ss_pred HHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccCceeeecccceeeecCHHHHHHH
Confidence 777888899999999999999999 8888889999999999999999999999655433322222111111111111122
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCCCCCCccccccc
Q psy5093 214 IFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNV 293 (662)
Q Consensus 214 ~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (662)
.........+.++..+++|+.+...+||+.|...
T Consensus 165 ~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k~~s---------------------------------------------- 198 (283)
T PF10323_consen 165 FLIAFIFVSVTCVICIVCYGIIFIFIRKRNKKKS---------------------------------------------- 198 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----------------------------------------------
Confidence 2334455566788999999999999997764110
Q ss_pred cccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccCCCchhH
Q psy5093 294 MSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEE 373 (662)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~ 373 (662)
++.+++.++|.+.+.+..++..++++...=+ +...+..... +.+...
T Consensus 199 ----------------------------~~~s~~~~rE~~L~~~~~i~~~a~~~~~~~~-~~~~~~~~~~----~~~~~~ 245 (283)
T PF10323_consen 199 ----------------------------KSSSRSRRREIRLAIQVFILFCAFFVILVYY-IFSNYFAQNF----NTDPIF 245 (283)
T ss_pred ----------------------------HhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcc----cchHHH
Confidence 1112334488888888877777665544333 3333222211 111122
Q ss_pred HHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcc
Q psy5093 374 LISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNH 410 (662)
Q Consensus 374 ~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~ 410 (662)
....+...+..+.+.+||+...+.|+++||++++..+
T Consensus 246 ~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~~~ 282 (283)
T PF10323_consen 246 YLRAFYPILNGLLSFINPWMLLIFNKDLRKQVRRMLK 282 (283)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHHHcC
Confidence 3334677788899999999999999999999877654
No 23
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=99.56 E-value=7.4e-13 Score=127.99 Aligned_cols=259 Identities=15% Similarity=0.143 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHHHHh
Q psy5093 52 TLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSL 131 (662)
Q Consensus 52 ~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~~~~ 131 (662)
....++..+..+++++|-+++++.+...|++|++.+-++.-++++|++..+..+... . ..+...++..|++++++
T Consensus 7 ~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~----~-~~~~~~~s~lC~~Qafl 81 (303)
T PF05462_consen 7 RTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMT----L-SPSAGENSFLCQFQAFL 81 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH----h-cccCCCCCcchhhHhHH
Confidence 345566677789999999999999999999999999999999999999876543211 1 12223457789999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccCCCcc
Q psy5093 132 DVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKG 211 (662)
Q Consensus 132 ~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 211 (662)
..++..++.+..++||++=|+.+.+... -.++.-....+++|.++++.++.++... ..+.....|.......
T Consensus 82 iq~f~~as~lWt~~iA~nly~~~~~~~~----~~~k~e~~Y~l~~wGiPli~a~i~l~~~----~~g~~G~WCWI~~~~~ 153 (303)
T PF05462_consen 82 IQFFMLASFLWTLCIAFNLYLTFVKRYD----ELEKLEKYYHLVCWGIPLIPAVIPLIGN----DYGPAGNWCWIKPEWD 153 (303)
T ss_pred HHHhhHHHHHHHHHHHHHhhheeEEcCc----cHHHHHHHHHHHHHHHHHHHHHHHHHcc----CCCCCCCceeecCCCc
Confidence 9999999999999999999999886422 2355556788889999999888766432 2233345786654422
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCCCCCCcccc
Q psy5093 212 YLIFSSTISFYLPLLVMVFTYFK-IYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEM 290 (662)
Q Consensus 212 ~~~~~~~~~~~ip~~ii~~~y~~-I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (662)
. .-...+.+|+.+++..... +....+...+..+...
T Consensus 154 ~---~r~~lfY~Pl~ii~~~~~ilv~i~~~~~y~~~~~~~---------------------------------------- 190 (303)
T PF05462_consen 154 V---WRFALFYIPLWIIIIISAILVGITMRYIYRVIRNGV---------------------------------------- 190 (303)
T ss_pred c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc----------------------------------------
Confidence 1 1123344554332222211 1111111111111000
Q ss_pred ccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccCCCc
Q psy5093 291 DNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQ 370 (662)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~ 370 (662)
+.+ .+++.+....+..=.++|++||+|..+..+....+.
T Consensus 191 -------------------------------sd~---~~~~~~~~~kL~~Yp~ifiicw~fa~INRI~~~~~~------- 229 (303)
T PF05462_consen 191 -------------------------------SDN---KDKHLKYQLKLVNYPLIFIICWIFATINRIYNFIGK------- 229 (303)
T ss_pred -------------------------------chh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------
Confidence 000 002223333355688899999999999999887632
Q ss_pred hhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHH
Q psy5093 371 DEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKI 407 (662)
Q Consensus 371 ~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~ 407 (662)
.+.++..+-..+..+...+|.++|++.++-.+|-+..
T Consensus 230 ~~~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~ 266 (303)
T PF05462_consen 230 NPFWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGS 266 (303)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 2345556666778889999999999999988888543
No 24
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.51 E-value=7.1e-13 Score=128.95 Aligned_cols=273 Identities=12% Similarity=0.133 Sum_probs=177.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchh-
Q psy5093 48 AQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCD- 126 (662)
Q Consensus 48 ~~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~- 126 (662)
...+.+.++.+.+.+++-.+..+.++.++.+++..|.+.+-++.-||+.|++...+....+-. .... |...|.
T Consensus 29 g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~-l~i~-----G~vfC~~ 102 (313)
T PF10321_consen 29 GVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGI-LAIF-----GAVFCSY 102 (313)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhH-HHhc-----CccccCC
Confidence 566788899999999999999999999998888778899999999999999996543221111 1112 333344
Q ss_pred -----HHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHH--HhhhhhHHHhhhccccCCC
Q psy5093 127 -----SWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICS--GGISFPAILWWRAVRNEEV 199 (662)
Q Consensus 127 -----~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s--~~~~~~~~~~~~~~~~~~~ 199 (662)
+.+.+....-..+......+|++|..-+..|......+..++..+.+.+..+.+ ..+..++..+...+..-.-
T Consensus 103 P~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fns~~~sw~f 182 (313)
T PF10321_consen 103 PRFIYIMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFNSEYMSWFF 182 (313)
T ss_pred chHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccCCCCcceEec
Confidence 445555666677888889999999999999877666666666554444333222 2222333332211110000
Q ss_pred CCCccccCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCc
Q psy5093 200 PKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMT 279 (662)
Q Consensus 200 ~~~~c~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (662)
++..-+....+.|.-....+..++-.+.+.++|+.+...++++.+....
T Consensus 183 DP~i~~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~~s------------------------------- 231 (313)
T PF10321_consen 183 DPMIFEGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYSTS------------------------------- 231 (313)
T ss_pred CccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-------------------------------
Confidence 0000011122234434444445555778889999999999887553210
Q ss_pred cCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy5093 280 LHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLS 359 (662)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~ 359 (662)
....+.+++......++.+.+.+.++-|.....+
T Consensus 232 ---------------------------------------------~~~~k~~~qI~iQs~iIC~f~~i~a~iyv~m~f~- 265 (313)
T PF10321_consen 232 ---------------------------------------------SQLSKAQRQIFIQSVIICFFHAIAAVIYVYMQFF- 265 (313)
T ss_pred ---------------------------------------------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHeeeee-
Confidence 1122367788888888877777665444322221
Q ss_pred HhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCC
Q psy5093 360 AVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKIS 413 (662)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~ 413 (662)
..+.++..+.....-+++..+|+||...|+..|++++++++..+
T Consensus 266 ----------~~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~~k~ 309 (313)
T PF10321_consen 266 ----------PPPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLGPKK 309 (313)
T ss_pred ----------cccHHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHcccc
Confidence 23667888889999999999999999999999999776665433
No 25
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=99.12 E-value=3.1e-10 Score=106.58 Aligned_cols=243 Identities=13% Similarity=0.088 Sum_probs=160.7
Q ss_pred cchhhHHHHHHHHHHHhhhhh-cccHHHHHhhccccccccccchhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCC--C
Q psy5093 83 HTSTNYFIMSLALADCLVGLV-VMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPL--T 159 (662)
Q Consensus 83 r~~~~~ll~~Lai~Dll~~l~-~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~--~ 159 (662)
.+|.+..+.+||+++++..+. .+| ...... ... .+++.+||+..|+..+.-..|+.+.+++++.+.+.|.-.. +
T Consensus 8 ~kp~dlIl~hLa~aN~lvLl~rGip-~~~~~~-~~~-~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItISP~~s~w 84 (265)
T PF03402_consen 8 LKPIDLILIHLALANILVLLSRGIP-QTMAFF-GWK-FFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITISPSNSRW 84 (265)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhHH-HHHHHh-hcc-cCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEecCCchh
Confidence 579999999999999988543 344 222222 222 3589999999999999999999999999997777776322 1
Q ss_pred -CCccccchhhhHHHHHHHHHHHhhhhhHHHhhhcccc-----CCCCCCccccCCCcch----hhhhHHHHHHHHHHHHH
Q psy5093 160 -YPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRN-----EEVPKNKCPFTDSKGY----LIFSSTISFYLPLLVMV 229 (662)
Q Consensus 160 -y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~-----~~~~~~~c~~~~~~~~----~~~~~~~~~~ip~~ii~ 229 (662)
.-+...++.+...+...|++.+++.....+....... .......|........ ......+-=++.+.+|+
T Consensus 85 ~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~~~~~~~~~~~~~D~~fvgLM~ 164 (265)
T PF03402_consen 85 AELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYIVSSLFATLLSFRDVLFVGLMI 164 (265)
T ss_pred hhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchhhhhhhhhHHHhhHHHHHHHHH
Confidence 1122345566677888899888776543332211111 1112345643222111 11122222355677888
Q ss_pred HHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCCCCCCccccccccccCCCcccccccccc
Q psy5093 230 FTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRI 309 (662)
Q Consensus 230 ~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (662)
...+.+...+.||+++.+.-+....+.+.+
T Consensus 165 ~aSgyMV~~L~RH~q~VqhIhs~~~s~r~S-------------------------------------------------- 194 (265)
T PF03402_consen 165 WASGYMVFLLYRHHQQVQHIHSSSLSPRSS-------------------------------------------------- 194 (265)
T ss_pred hhhhhheeeeeecccccccCcCCCCCCCCC--------------------------------------------------
Confidence 888999999999988766543332222111
Q ss_pred ccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhccc
Q psy5093 310 IHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 389 (662)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~ 389 (662)
.|.|+++++++++..|+..+..-.++..+..... + ..++..+..++....+.+
T Consensus 195 --------------------pE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~------~-~~~~~~~~~~ls~cfpti 247 (265)
T PF03402_consen 195 --------------------PETRATKTILLLVSTFVSFYGLSSILFIYLTSFK------N-SPWLLNISVFLSSCFPTI 247 (265)
T ss_pred --------------------hhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhc------C-CcceeEHHHHHhHHhHhh
Confidence 7999999999999999999888777655443321 1 223345677889999999
Q ss_pred cchhhhhcChhHHHHH
Q psy5093 390 NPVIYACWSRDFRSKE 405 (662)
Q Consensus 390 nP~IY~~~~~~fR~~~ 405 (662)
.|++....+++..+-+
T Consensus 248 sPfvLI~~d~~i~~~~ 263 (265)
T PF03402_consen 248 SPFVLISSDKRIIKFL 263 (265)
T ss_pred ChHHhhccCchHHHHh
Confidence 9999999999887654
No 26
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=99.11 E-value=9.9e-09 Score=101.17 Aligned_cols=263 Identities=14% Similarity=0.171 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHhhHhhhhheecc-ccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccc----------cccccccc
Q psy5093 56 STLSLFSLVTVFGNALVMIAVVRE-RYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDH----------NWIFGLNW 124 (662)
Q Consensus 56 ~~~~ii~i~gl~gN~~vi~~i~~~-~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~----------~~~~~~~~ 124 (662)
++..+.+++|++.|+++++.+.++ ++.-+...+++.|-|+.|++.++.... ........+ ...+|+..
T Consensus 3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~-~q~R~i~~~~~~~~~~~GpC~~~~~~~ 81 (292)
T PF10317_consen 3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFL-TQPRIIPNGTSIAVISYGPCRYFGPWF 81 (292)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhccCCCCcEEEEeeecceecCcHH
Confidence 356788999999999998877655 444467889999999999999765432 222222111 12346777
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccc--------c
Q psy5093 125 CDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVR--------N 196 (662)
Q Consensus 125 C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~--------~ 196 (662)
|.....+...+...+.+.+.+--..||..+.++.. ++++....+++.+..++...+...+...... .
T Consensus 82 C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-----~~~~~i~~~~l~~~p~~~~~i~~~~~~~~~~~~~~~~~~~ 156 (292)
T PF10317_consen 82 CFFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP-----SRKRIIFICILIYIPSFSMLIFFFFSPTDSEPVEAELNQF 156 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHh
Confidence 88888888888899999999999999999997532 6677777777888877777665444322110 0
Q ss_pred CCC----CCCccccCCCcchhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeee
Q psy5093 197 EEV----PKNKCPFTDSKGYLIFSSTISFYLPLL----VMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRI 268 (662)
Q Consensus 197 ~~~----~~~~c~~~~~~~~~~~~~~~~~~ip~~----ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (662)
.+. +...-+..+..........+...++.. ++.++--+|.+.++++..++.
T Consensus 157 ~p~y~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~R~ki~~~L~~~~~~~S--------------------- 215 (292)
T PF10317_consen 157 HPEYNLENYSISGFSDISSPPSLINILIMTIPIFPIPIVIFFLRRKILKFLNKKSSSMS--------------------- 215 (292)
T ss_pred CcccccccceeeeecchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhcC---------------------
Confidence 000 000001111111111112222222222 222222333333333211111
Q ss_pred ccCCCCCCCCccCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhh
Q psy5093 269 HRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVC 348 (662)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~ 348 (662)
++.++.+++.+|.+.+-++.=+++
T Consensus 216 --------------------------------------------------------~~tk~~h~~lv~~Lt~Q~~lP~~~ 239 (292)
T PF10317_consen 216 --------------------------------------------------------ERTKSMHRQLVKGLTIQALLPLFF 239 (292)
T ss_pred --------------------------------------------------------HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 122337888999999999988889
Q ss_pred hhhHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHH
Q psy5093 349 WLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKI 407 (662)
Q Consensus 349 ~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~ 407 (662)
..|.....++.... .........+...+..+-+.+||++....-+.||++++|
T Consensus 240 ~~p~~~~~~~~~~~------~~~~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r 292 (292)
T PF10317_consen 240 YIPGVIIYFLSQFT------GYEHPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAILR 292 (292)
T ss_pred HHHHHHHHHHHHHh------ccccHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence 99888877776663 333566777888889999999999999999999999764
No 27
>KOG2087|consensus
Probab=98.90 E-value=3.1e-11 Score=114.65 Aligned_cols=150 Identities=19% Similarity=0.284 Sum_probs=103.5
Q ss_pred ccceeeeehhhHHHHHHhhchhhhhhcccccCCccCCCCce-----ecCCchhHhhhhhHHHHHhHHHHHHHHHHHHHHH
Q psy5093 424 YPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCP-----FTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAA 498 (662)
Q Consensus 424 ~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~C~-----~~~~~~y~~~~~~~~f~lP~~ii~~~Y~~I~~~~ 498 (662)
+.+...++++..|+.+++.++.|+++.+.+. ....|. ...+..|.+..++..-.+-+++|.++|.+|+..+
T Consensus 144 ~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y~----~~~vClPL~~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l 219 (363)
T KOG2087|consen 144 KLRPLVLILLLGWLFAFLMALLPLFGISSYG----ASSVCLPLHIEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSL 219 (363)
T ss_pred cccHHHHHHHHHHHHHHHHHhccccCCCCCc----ccceeeecccCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheee
Confidence 4455788899999999999998888744432 335782 2223336666667777889999999999999887
Q ss_pred HHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCcccccCCccccccccccccc
Q psy5093 499 VVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNF 578 (662)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (662)
++......
T Consensus 220 ~~~~~~~~------------------------------------------------------------------------ 227 (363)
T KOG2087|consen 220 RKGDLSAT------------------------------------------------------------------------ 227 (363)
T ss_pred ecCCCccc------------------------------------------------------------------------
Confidence 65322110
Q ss_pred chhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhccc
Q psy5093 579 SLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSR 658 (662)
Q Consensus 579 ~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~ 658 (662)
....+.+|-+..++.+-++||.|..+..+...+..... .....-.+...+.-.|||+||++|+++++
T Consensus 228 ---------~~~~~~akr~a~LvfTd~icw~Pi~f~~~~al~~~~li----~~~~sk~llv~flPlns~~NP~LYa~fT~ 294 (363)
T KOG2087|consen 228 ---------LISTSVAKRMAFLVFTDCICWCPIAFFKFSALIGVELI----SVSYSKWLLVFFLPLNSCLNPFLYAFFTP 294 (363)
T ss_pred ---------cchhhhhhCeeEEEEccccccCchheeeeHHhcCCccc----ChhhceeEEEEEEEcccccCchhHHHcCH
Confidence 01125667778888899999999999998877653211 11111112223445799999999999999
Q ss_pred cccC
Q psy5093 659 DFRR 662 (662)
Q Consensus 659 ~fR~ 662 (662)
.||+
T Consensus 295 ~fk~ 298 (363)
T KOG2087|consen 295 VFKE 298 (363)
T ss_pred HHHH
Confidence 9985
No 28
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=98.83 E-value=9.7e-08 Score=87.20 Aligned_cols=161 Identities=12% Similarity=0.098 Sum_probs=105.5
Q ss_pred ccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy5093 80 RYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLT 159 (662)
Q Consensus 80 ~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~ 159 (662)
+++|.-.+.+++||.++|++-++..+...+.... ++.-..+...|..++++..+...++.+.+.+||++=|+.|.+|-.
T Consensus 30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~-~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~~ 108 (201)
T PF11710_consen 30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLA-RGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPNW 108 (201)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3445666779999999999998765442333332 333344677899999999999999999999999999999999822
Q ss_pred CCc---c------ccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccCCCc-chhhhhHHHHHHHHHHHHH
Q psy5093 160 YPS---R------MSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSK-GYLIFSSTISFYLPLLVMV 229 (662)
Q Consensus 160 y~~---~------~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~~~~~~~~~ip~~ii~ 229 (662)
.++ . ..+..+..+..+.|++ .+...++.. ...........|....+. .+.....-+...+-.+.++
T Consensus 109 ~~~~~~~~~~gl~~~~~~v~~~~~~~~~~---~~~la~i~~-~~~~Y~~~g~WCWi~~~~~~~Rl~l~y~~~~~~~~~~i 184 (201)
T PF11710_consen 109 KRKRSKNVEGGLYPYRYWVWVIWILVPLL---LASLAFIGL-GGPGYGPAGAWCWIPSRYEWYRLWLHYIWRFIIIFAII 184 (201)
T ss_pred ccccccccccceEEeeeeeehHHHHHHHH---HHHHHHhcc-ccCcccccCcEEEECCCcHHHHHHHHHHHHHHHHHHHH
Confidence 111 0 1112222233334443 333333321 122334456788665543 3555556666666788999
Q ss_pred HHHHHHHHHHHHHhhc
Q psy5093 230 FTYFKIYRAAVVQTKS 245 (662)
Q Consensus 230 ~~y~~I~~~l~~~~~~ 245 (662)
+.|+.|+..+||+.|+
T Consensus 185 ~iY~~if~~lrr~~~~ 200 (201)
T PF11710_consen 185 IIYIAIFFYLRRRIRR 200 (201)
T ss_pred HHHHHHHHHHhhhhcc
Confidence 9999999999998764
No 29
>KOG4193|consensus
Probab=98.68 E-value=8.3e-07 Score=93.97 Aligned_cols=263 Identities=10% Similarity=0.064 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccc-ccc-chhHH
Q psy5093 51 RTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIF-GLN-WCDSW 128 (662)
Q Consensus 51 ~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~-~~~-~C~~~ 128 (662)
..+..++--+-+++++++=.+.++++.--|++++-.+...++|+++=++.-++++ -+.|.. ... .|...
T Consensus 319 ~~~l~~i~~VG~~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~~l~fL---------~~~~~~~~~~~~C~~~ 389 (610)
T KOG4193|consen 319 TLLLDILSTVGCIISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLAELLFL---------LGIDRTSTSVVLCIAA 389 (610)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh---------cccccccCcccccHHH
Confidence 3344444455556666666666666666666666557788888887333222111 122221 223 79999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccCC
Q psy5093 129 RSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTD 208 (662)
Q Consensus 129 ~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 208 (662)
+++..++..+..+.+.++++.-|..++. ..+....++........|..++++...........+........|....
T Consensus 390 a~llhff~LaaF~Wm~leg~hl~~~~v~---vf~~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~CWl~~ 466 (610)
T KOG4193|consen 390 AILLHFFFLAAFFWMLLEGFHLYLLLVE---VFRSRPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRVCWLDT 466 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccccchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCCceEEec
Confidence 9999999999999999999999996554 2333455555555568999888776665554333322233334476665
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCCCCCCcc
Q psy5093 209 SKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDV 288 (662)
Q Consensus 209 ~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (662)
.....+. |+.|+.+++.+++.++...-.+-.+.......
T Consensus 467 ~~~~~~~-----F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~------------------------------------ 505 (610)
T KOG4193|consen 467 QNGFIWS-----FLGPVTLIILVNIVMFVVTLKKLLRRLSKLQP------------------------------------ 505 (610)
T ss_pred CCceEEE-----EehHHHHHHHHHHHHHHHHHHHHhhcccccCc------------------------------------
Confidence 5544443 66777777777755544333322211100000
Q ss_pred ccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccCC
Q psy5093 289 EMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWS 368 (662)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~ 368 (662)
..+..+..+..+..++++.++-+.|.--+....
T Consensus 506 ------------------------------------~~~~~~~~~~~~~~l~L~~lLGlTW~fgi~s~~----------- 538 (610)
T KOG4193|consen 506 ------------------------------------IASKLENISLIRSALALLFLLGLTWIFGIFSWL----------- 538 (610)
T ss_pred ------------------------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 000002226677777788888888864322221
Q ss_pred CchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCC
Q psy5093 369 EQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKIS 413 (662)
Q Consensus 369 ~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~ 413 (662)
......+.++..++..+..++-.+.|++++++.|++.++.+|+.+
T Consensus 539 ~~~~~v~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~~~~ 583 (610)
T KOG4193|consen 539 PGTSVVFAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLCCGR 583 (610)
T ss_pred cccchHHHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhcccC
Confidence 113455667777788888888899999999999999888877443
No 30
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=98.60 E-value=4e-06 Score=82.64 Aligned_cols=264 Identities=14% Similarity=0.158 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHHHHhhHhhhhheec-cccccchhhHHH----HHHHHHHHhhhhhcccHHHHHhhccccccccccchh-
Q psy5093 53 LLVSTLSLFSLVTVFGNALVMIAVVR-ERYLHTSTNYFI----MSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCD- 126 (662)
Q Consensus 53 i~~~~~~ii~i~gl~gN~~vi~~i~~-~~~lr~~~~~ll----~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~- 126 (662)
++...+-++++++++.|.+.++.+.. .+++.+ ..+++ +...++|+-.+.+.-|+.+.... +.+..| ..|+
T Consensus 10 ~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~-fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~--agy~~G-~l~~~ 85 (303)
T PF10327_consen 10 WLINYYHIIGVISFILNSLGIYLIIFKSPKLDN-FRYYLLYFQISCTLTDIHLTFLMQPIPLFPIP--AGYCVG-FLARY 85 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeEEEecCCccc-hhhHHHHHHHHHHHhhhhhhhhccchhhccee--EEEEEe-ehhhc
Confidence 45677888899999999999887664 455544 32233 34568899888888886555433 222222 2233
Q ss_pred ------HHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccc----c
Q psy5093 127 ------SWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVR----N 196 (662)
Q Consensus 127 ------~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~----~ 196 (662)
....+..+......-.++.--+-|..+|.+..+.+ ..++..-........+..+.............+ .
T Consensus 86 f~i~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~-~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~eeq~~y 164 (303)
T PF10327_consen 86 FGISSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKH-VLPKWFYIFFYFFCILFPFFIFICFYFSGMSREEQMEY 164 (303)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-cCcHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 33344444444455555666678999999876532 234444334444444444444332221111100 0
Q ss_pred CCCCCCcc--cc---------CCCcch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCcc
Q psy5093 197 EEVPKNKC--PF---------TDSKGY--LIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKE 263 (662)
Q Consensus 197 ~~~~~~~c--~~---------~~~~~~--~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 263 (662)
-......| .+ +.+..+ ......++..+..++..+++..+++.+++.+++..+
T Consensus 165 I~~nyP~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS~--------------- 229 (303)
T PF10327_consen 165 IRENYPEYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKISK--------------- 229 (303)
T ss_pred HHhhCCchhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH---------------
Confidence 00111111 11 111111 122233445556777888888999888887765432
Q ss_pred ceeeeccCCCCCCCCccCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHH
Q psy5093 264 LTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMG 343 (662)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 343 (662)
+..++++++.+.+.+-.+
T Consensus 230 --------------------------------------------------------------~ty~kHk~av~SLi~Q~~ 247 (303)
T PF10327_consen 230 --------------------------------------------------------------QTYQKHKEAVRSLIAQFA 247 (303)
T ss_pred --------------------------------------------------------------HHHHHHHHHHHHHHHHHH
Confidence 234488999999999999
Q ss_pred HHHhhhhhHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHH
Q psy5093 344 VFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSK 404 (662)
Q Consensus 344 ~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~ 404 (662)
+-.+|-+|..+...+.... ......+.........++|.+|-++..+.++.||+-
T Consensus 248 ~~~i~~~P~~~~~~~~~~~------~~~~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f 302 (303)
T PF10327_consen 248 TSSICILPPFIFVVVVIFE------FEDAQVISEICLAIFSSHSSVNMIVLIITTPPYRKF 302 (303)
T ss_pred HHHHHHHHHHHhhhhheec------CCCcHHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence 9999999998887765542 333556677888888999999999999999999984
No 31
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=98.60 E-value=2.5e-05 Score=78.20 Aligned_cols=110 Identities=9% Similarity=-0.004 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHH---HHhhc---cccccccccchhH
Q psy5093 54 LVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSA---LYELL---DHNWIFGLNWCDS 127 (662)
Q Consensus 54 ~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~---~~~~~---~~~~~~~~~~C~~ 127 (662)
...+-.+++++|++.++..+..+..++..|.-..+++....++.++.++..+.... ..+.. +.+...+...|-+
T Consensus 19 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~ 98 (324)
T PF10292_consen 19 SLIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFI 98 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHH
Confidence 44456777788888888888888888888888888899899999888764333222 11211 2233345667988
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcc
Q psy5093 128 WRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSR 163 (662)
Q Consensus 128 ~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~ 163 (662)
......++......+..++++||++|-.+.-+|.+.
T Consensus 99 lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~ 134 (324)
T PF10292_consen 99 LRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKS 134 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC
Confidence 899999999999999999999999999998888654
No 32
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=98.55 E-value=2.3e-06 Score=84.11 Aligned_cols=183 Identities=13% Similarity=0.144 Sum_probs=105.4
Q ss_pred HHHHHHHHHhhHhhhhheecccc--c-cchhhHHHHHHHHHHHhhhhhcccHHHHHhhccc------c-ccccccchhHH
Q psy5093 59 SLFSLVTVFGNALVMIAVVRERY--L-HTSTNYFIMSLALADCLVGLVVMPFSALYELLDH------N-WIFGLNWCDSW 128 (662)
Q Consensus 59 ~ii~i~gl~gN~~vi~~i~~~~~--l-r~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~------~-~~~~~~~C~~~ 128 (662)
.+-++.|++.+..+++++.++++ . +++.+.+...=++.|++.-+...+..=....... . ....+...++.
T Consensus 5 ~~Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (275)
T PF02118_consen 5 LIYGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIF 84 (275)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHH
Confidence 45567788888888888887776 3 6677777777777777764433221000000000 0 11234557777
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCcccc-C
Q psy5093 129 RSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPF-T 207 (662)
Q Consensus 129 ~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~-~ 207 (662)
.++...+..+.....+.++++|+-++..|.++++..++.. ..+++++.++++....+... ...+.....+...-.. +
T Consensus 85 ~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~-~~~i~~i~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 162 (275)
T PF02118_consen 85 YFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYY-WIIIIIIFLLPFSFTWNIFI-SPTYVVYDNGGFSYSYND 162 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhh-hhheeeeeehhHHHHHHHHc-cccEEEEECCceEEEEEe
Confidence 8888889999999999999999999999999877666433 34555555555544443333 2222111111111111 1
Q ss_pred C-CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5093 208 D-SKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQT 243 (662)
Q Consensus 208 ~-~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~ 243 (662)
. ............+++..++.++++....+++++.+
T Consensus 163 ~~~~~~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~ 199 (275)
T PF02118_consen 163 TVSWASLSIFSLIYFIIIIIITIITNIITYRRLRKLS 199 (275)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1 11112222334444455566667777777776544
No 33
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=98.53 E-value=1.2e-05 Score=77.47 Aligned_cols=142 Identities=18% Similarity=0.238 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHhhhhhcccHHHHHhhccccc----------cccccchhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcC
Q psy5093 87 NYFIMSLALADCLVGLVVMPFSALYELLDHNW----------IFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITD 156 (662)
Q Consensus 87 ~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~----------~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~ 156 (662)
.-.+..||++|++.++-.+.-...+....... ......|-.......+++.++.|.+.+-|+|-|+.+.+
T Consensus 68 ~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~ 147 (405)
T PF02101_consen 68 RRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRR 147 (405)
T ss_pred chhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeec
Confidence 46888999999999775443333332221111 01235688888777889999999999999999998865
Q ss_pred CCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q psy5093 157 PLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIY 236 (662)
Q Consensus 157 P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~ 236 (662)
.- .+.....--.++|..+.++..--.... +. + ....|..... ..+-..+...+|++++.+.+=.++
T Consensus 148 ~a------g~~~~~lYH~~aWgl~~lL~~~Gl~~L--y~--P-s~~~Ce~~l~---~alphYvttY~PlllVlvaNPiLy 213 (405)
T PF02101_consen 148 SA------GRSTIWLYHMMAWGLPALLCAEGLAML--YY--P-SISRCESGLE---HALPHYVTTYIPLLLVLVANPILY 213 (405)
T ss_pred cC------CCcchhHHHHHHHHHHHHHHHhcccee--ec--C-CHHhhhhhhh---hcchhHHHHHHHHHHHHHhccHHH
Confidence 21 122334566778888877665433321 11 1 1124543221 233444555667777777766666
Q ss_pred HHHHHH
Q psy5093 237 RAAVVQ 242 (662)
Q Consensus 237 ~~l~~~ 242 (662)
++.-+.
T Consensus 214 ~~a~~~ 219 (405)
T PF02101_consen 214 IKAVRA 219 (405)
T ss_pred HHHHHH
Confidence 555443
No 34
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=98.46 E-value=2.1e-06 Score=86.34 Aligned_cols=174 Identities=16% Similarity=0.201 Sum_probs=119.6
Q ss_pred ccccCCcccccceeeeehhhHHHHHHhhchhhhhhcccccCC--ccCCCCce-ec---CCc-------------------
Q psy5093 415 VVFLLPMCMYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNE--EVPKNKCP-FT---DSK------------------- 469 (662)
Q Consensus 415 ~~~~y~~~~~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~--~~~~~~C~-~~---~~~------------------- 469 (662)
.+...+...+++....++.+.++.+.+...+..+.....+.. ..+...|. ++ ...
T Consensus 111 ~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~ 190 (318)
T PF10324_consen 111 MSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSGFPENYTFPRYMLNISELFTENDCLFFR 190 (318)
T ss_pred ccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceeeccccccccccchhhhhhhhhhHHHHHH
Confidence 334445556678888888888888888888887766554322 12334573 11 111
Q ss_pred hhHhhhhhHHHHHhHHHHHHHHHHHHHHHHHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccc
Q psy5093 470 GYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEM 549 (662)
Q Consensus 470 ~y~~~~~~~~f~lP~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (662)
.|.....++.-++|.++..+..+.+.+.+||..++.+...+.
T Consensus 191 ~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~-------------------------------------- 232 (318)
T PF10324_consen 191 IYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSS-------------------------------------- 232 (318)
T ss_pred HHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhccccc--------------------------------------
Confidence 122222333467899999999999998888766554322100
Q ss_pred cccccCCCCcccccCCcccccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCc
Q psy5093 550 DNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQ 629 (662)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~ 629 (662)
...++.|.++++..+++.|+++=+|..+..++..+.++......
T Consensus 233 ------------------------------------~~~~~~~tt~li~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~ 276 (318)
T PF10324_consen 233 ------------------------------------KSKKSDRTTKLILFMTISFLISELPQGIIFLLESFFEEDSGLIF 276 (318)
T ss_pred ------------------------------------ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence 01245678999999999999999999999999886443111223
Q ss_pred chhHHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093 630 DEELISAVVTWLGWINSGMNPVIYACWSRDFRR 662 (662)
Q Consensus 630 ~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~ 662 (662)
.......+...|..+|+..|++||.+++.+||+
T Consensus 277 ~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~ 309 (318)
T PF10324_consen 277 IIIQLSIIFNILITINSSIHFFICCFMSSQYRK 309 (318)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHH
Confidence 345667788889999999999999999999995
No 35
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=98.33 E-value=1.3e-07 Score=94.51 Aligned_cols=263 Identities=15% Similarity=0.205 Sum_probs=152.4
Q ss_pred HHHHHHHHHhhHhhhhheecc-ccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhc---------cccccccccchhHH
Q psy5093 59 SLFSLVTVFGNALVMIAVVRE-RYLHTSTNYFIMSLALADCLVGLVVMPFSALYELL---------DHNWIFGLNWCDSW 128 (662)
Q Consensus 59 ~ii~i~gl~gN~~vi~~i~~~-~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~---------~~~~~~~~~~C~~~ 128 (662)
-+..+++++.|++.++.+.++ ++.-.....++...|+.|++.+++-....-..... .+.+..+....+..
T Consensus 6 ~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (307)
T PF10326_consen 6 YIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQIL 85 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheeeh
Confidence 456788999999998887654 33334566788888999998877644322211111 12223344456666
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhcc------------cc
Q psy5093 129 RSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAV------------RN 196 (662)
Q Consensus 129 ~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~------------~~ 196 (662)
..+...+...+...++.-=+.||.++++|.+- +....++..+.++..-+.++.......+..... +.
T Consensus 86 ~~~y~~~f~~~~~llaihFiYRY~av~~~~~l-~~f~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~lr~~~~~~ 164 (307)
T PF10326_consen 86 LAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKL-RYFSGWRFIIWFLIPIIFGIIWFLLVYFFFSPDEESDEYLREELLEN 164 (307)
T ss_pred hhhhhhhHHHHHHHHHhHhhhheeeeccchhh-ccccccceeeeehhhhhhcccceEEEeehhccchhhhhhhccccccc
Confidence 66777777777888888888999999999753 344444443332222222222222111111110 00
Q ss_pred CCCCCCcc----------ccCC------CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCC
Q psy5093 197 EEVPKNKC----------PFTD------SKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSG 260 (662)
Q Consensus 197 ~~~~~~~c----------~~~~------~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~ 260 (662)
.+.+.... +.+. ..............+.+.++++|-.++++++++..+...
T Consensus 165 y~~~i~~~~y~~~~~y~~~~nG~~~~~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~S------------- 231 (307)
T PF10326_consen 165 YGLDIDEIPYVGFVYYPKDENGSKELNWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIMS------------- 231 (307)
T ss_pred cCCCccceeEEEEEEeeeccCCceeechhhheeeeecchhHHhHHHHHHHHHhhhHHHHhccccccC-------------
Confidence 00000000 0011 111122233455567888888888888888854322110
Q ss_pred CccceeeeccCCCCCCCCccCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHH
Q psy5093 261 EKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGI 340 (662)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 340 (662)
++.++-++|..+.+.+
T Consensus 232 ----------------------------------------------------------------~~~~~lq~QLf~aLv~ 247 (307)
T PF10326_consen 232 ----------------------------------------------------------------SKTRKLQKQLFKALVI 247 (307)
T ss_pred ----------------------------------------------------------------hhhHHHHHHHHHHHHH
Confidence 0112256777777765
Q ss_pred HHH-HHHhhhhhHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHH
Q psy5093 341 VMG-VFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEK 406 (662)
Q Consensus 341 i~~-~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~ 406 (662)
-++ =.++..+|..+..+...++-+ ......+...+..+.+++||++-.+.-++||++++
T Consensus 248 Qt~iP~i~~~~P~~~~~~~p~~~i~-------~~~~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i~ 307 (307)
T PF10326_consen 248 QTIIPFIFMYIPVFIVFILPFFGID-------LGFFSNIISILISLYPAIDPLPVIFIIKDYRKAIK 307 (307)
T ss_pred HhhhhheeeecchhheeeeeccCCC-------CCccccHhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence 544 455668998888877766422 22334456667789999999999999999999864
No 36
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=98.23 E-value=0.00015 Score=66.74 Aligned_cols=248 Identities=15% Similarity=0.236 Sum_probs=151.7
Q ss_pred hhHhhhhheeccccccchhhHHHHHHHHHHHhhhhh----cccHHHHHhhccccccccccchhHHHHhhHHHHHHHHHHH
Q psy5093 68 GNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLV----VMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNL 143 (662)
Q Consensus 68 gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~----~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l 143 (662)
|-.+++.++.-..-.+-+...|+..|.++-.+.+.+ ..|-++... ...+.. .+..-.+..+...++.++-.+.=
T Consensus 31 ~~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl-~t~~~~-~s~~f~~~Sy~idf~h~siLfsN 108 (305)
T PF04789_consen 31 GAFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSL-ITKEFV-QSELFIFMSYLIDFCHYSILFSN 108 (305)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHh-hhHHHh-ccchhhHHHHHHHHHHHHHHHHH
Confidence 333444444333333457889999999998887654 345322222 222222 23334556778888888889999
Q ss_pred HHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccC---CCCCCccccC-------CCcchh
Q psy5093 144 CVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNE---EVPKNKCPFT-------DSKGYL 213 (662)
Q Consensus 144 ~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~---~~~~~~c~~~-------~~~~~~ 213 (662)
..||+.|....-+-....+.+...-..+-+..+|++++..-....-..-.+..+ ......|+.. ....-.
T Consensus 109 lviaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y~L~C~~~~~~v~~~~P~~Iq 188 (305)
T PF04789_consen 109 LVIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHYQLNCETCNSVVDISPPRGIQ 188 (305)
T ss_pred HHHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccEEEEcCCCCeeEeeCCCCchh
Confidence 999999988776433333455677788888999999988766554433222221 2222345333 233445
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCCCCCCccccccc
Q psy5093 214 IFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNV 293 (662)
Q Consensus 214 ~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (662)
.+-.++.+.+|+.+. +.|+.+..++...++...
T Consensus 189 iiE~ilQ~~IPi~Il-~iYiAIIiKI~~MKkssL---------------------------------------------- 221 (305)
T PF04789_consen 189 IIEIILQFGIPIFIL-VIYIAIIIKIIKMKKSSL---------------------------------------------- 221 (305)
T ss_pred HHHHHHHHhHHHHHH-HHHHHHHHHHHHHhhccC----------------------------------------------
Confidence 677888999997655 457777666654443211
Q ss_pred cccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccCCCchhH
Q psy5093 294 MSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEE 373 (662)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~ 373 (662)
.+.|.+..|..+.+.+.| ..+-.++.+-.... .......
T Consensus 222 ----------------------------------nK~Ei~ILKQAifIFvlF---Q~ss~VFl~~qt~~----~~~~tAF 260 (305)
T PF04789_consen 222 ----------------------------------NKNEITILKQAIFIFVLF---QASSCVFLLCQTFK----FNVATAF 260 (305)
T ss_pred ----------------------------------CchhHHHHHHHHHHHHHH---HHHHHHHHhheeee----ecchHHH
Confidence 015777777776655544 44443333332221 1233344
Q ss_pred HHHHHHHHHHHhhccccchhhhhcChhHHHHH
Q psy5093 374 LISAVVTWLGWINSGMNPVIYACWSRDFRSKE 405 (662)
Q Consensus 374 ~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~ 405 (662)
.+..+...+-.+..+..|-.+...++|.||-+
T Consensus 261 lIKR~iNT~ei~agaatP~ffffTs~eirk~~ 292 (305)
T PF04789_consen 261 LIKRIINTMEIFAGAATPCFFFFTSKEIRKLV 292 (305)
T ss_pred HHHHHHHHHHHHhhccCCeEEEEehHHHHHHH
Confidence 56677777888889999999999999999874
No 37
>KOG4564|consensus
Probab=98.22 E-value=8.6e-05 Score=75.36 Aligned_cols=264 Identities=13% Similarity=0.101 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccc-------c----ccccccc
Q psy5093 56 STLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDH-------N----WIFGLNW 124 (662)
Q Consensus 56 ~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~-------~----~~~~~~~ 124 (662)
+++.+--.++++.=++.+.++..-|++|-..|+.=.||-++=++-++..+........... . -..+...
T Consensus 149 ~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 228 (473)
T KOG4564|consen 149 ILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVG 228 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchh
Confidence 4555555555555555556666677888889999999999998887764442222221111 0 1246678
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCcc
Q psy5093 125 CDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKC 204 (662)
Q Consensus 125 C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c 204 (662)
|+...++...+..+..+.+.+=+++=+-.+.--... .++.....+.+.|.+++++..+-.+......+ ..|
T Consensus 229 Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~s----er~~~~~y~~iGWG~P~v~v~~Wai~r~~~~d-----~~C 299 (473)
T KOG4564|consen 229 CKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFFS----ERRYFWLYLLIGWGVPAVFVVVWAIVRLYLED-----TGC 299 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeecc----CccHHHHHHHHhhCCcHHHhhhHHhHheeecc-----ccc
Confidence 999999999999999988888887766666543221 25667778889999999988887776522211 157
Q ss_pred ccCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeeccCCCCCCCCccCCCC
Q psy5093 205 PFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTP 284 (662)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (662)
...........+.-.-.++.+++-.+..+.|++.+-++-|......
T Consensus 300 W~~~~~~~~~WIi~gPi~~ai~vNf~flinIvrILv~KLr~~~~~~---------------------------------- 345 (473)
T KOG4564|consen 300 WDSNDTGHIWWIIRGPILLAILVNFIFLINIVRILVTKLRASNASE---------------------------------- 345 (473)
T ss_pred cccCCCcceEEEEeccHHHHHHHHHHHHHHHHHHHHHHhcCccccc----------------------------------
Confidence 6555432222222222334455555556666666655443211100
Q ss_pred CCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhcc
Q psy5093 285 SDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTK 364 (662)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~ 364 (662)
...-+|++|..++++=+|-+-.+. ..+.++
T Consensus 346 -------------------------------------------~~~y~K~vKaTLvLIPLfGI~~il-------f~~~P~ 375 (473)
T KOG4564|consen 346 -------------------------------------------TDQYRKLVKATLVLIPLFGIHYIL-------FAFRPD 375 (473)
T ss_pred -------------------------------------------hHHHHHHHHHHHHHHHHcCCeeEE-------EEecCc
Confidence 003556666666555554433221 111121
Q ss_pred ccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCCcc
Q psy5093 365 CFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKISPV 415 (662)
Q Consensus 365 ~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~~~ 415 (662)
. .........+-..|..++.++--++|++.|+|.|.++|+.+.+.+..
T Consensus 376 ~---~~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r~~~~ 423 (473)
T KOG4564|consen 376 E---DTLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWSRWRLS 423 (473)
T ss_pred h---HHHHHHHHHHHHHHHhccchheehheeecCHHHHHHHHHHHHhcChh
Confidence 0 01233344566678888999999999999999999999988776544
No 38
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=98.21 E-value=0.0002 Score=71.34 Aligned_cols=273 Identities=11% Similarity=0.075 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHHhhHhhhhheecc-ccccchhhHHHHH----HHHHHHhhhhhcccHHHHHhhc---cccccccccch
Q psy5093 54 LVSTLSLFSLVTVFGNALVMIAVVRE-RYLHTSTNYFIMS----LALADCLVGLVVMPFSALYELL---DHNWIFGLNWC 125 (662)
Q Consensus 54 ~~~~~~ii~i~gl~gN~~vi~~i~~~-~~lr~~~~~ll~~----Lai~Dll~~l~~~p~~~~~~~~---~~~~~~~~~~C 125 (662)
+....=++.+++++-|++.++.+.++ ++.-+.....+++ ..+.|+..+.+..|+....... .|-...-..-.
T Consensus 6 ~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~ 85 (302)
T PF10318_consen 6 YSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPT 85 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccCh
Confidence 45566677888999999988877665 3322333333333 3467888887777744433221 11111112346
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccc--------cC
Q psy5093 126 DSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVR--------NE 197 (662)
Q Consensus 126 ~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~--------~~ 197 (662)
.++.++..........++..+=-+||.++....+ +...++......+..++++....+|........+ ..
T Consensus 86 ~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~--~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~pdQ~~~k~~~~~~~ 163 (302)
T PF10318_consen 86 PIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS--RSLWKKIRIIFIIFNYIIAFLFFIPIYLSIPDQEEAKQEVLKKY 163 (302)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc--cccchhhHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhc
Confidence 6777777777778888888888999999996533 2222333334455556666666666655433210 01
Q ss_pred CCCC--Ccc-c----cCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccCCCCCCccceeeecc
Q psy5093 198 EVPK--NKC-P----FTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHR 270 (662)
Q Consensus 198 ~~~~--~~c-~----~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (662)
+... ..+ + ...+..+......+..++....+++....+.+.++++.+.
T Consensus 164 pc~~~~~~~~~~~fv~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~------------------------- 218 (302)
T PF10318_consen 164 PCPPPEFFDNPPVFVLSTDSWYILIIIIIFLLIIFIQIIFFAFLIIYYLLKSQKK------------------------- 218 (302)
T ss_pred cCCchhhcCCCCeEEEcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh-------------------------
Confidence 1111 011 0 0111222223333333333333444444444444443321
Q ss_pred CCCCCCCCccCCCCCCccccccccccCCCccccccccccccccccccccccccchhhHHhhhhhHHHHHHHHHHHHhh-h
Q psy5093 271 GGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVC-W 349 (662)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~f~i~-~ 349 (662)
+..++..+.++|..+.+.+-+++.++. -
T Consensus 219 ---------------------------------------------------~~S~~T~k~Qkkfl~~l~iQ~~ip~~~l~ 247 (302)
T PF10318_consen 219 ---------------------------------------------------TMSKKTRKMQKKFLIALIIQVLIPFIFLF 247 (302)
T ss_pred ---------------------------------------------------hhCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 011122336777777777666655554 4
Q ss_pred hhHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhccc
Q psy5093 350 LPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHK 411 (662)
Q Consensus 350 ~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~ 411 (662)
.|..........+. ....+..+...+...++...-++..+.++.+|+.+++++||
T Consensus 248 ~P~~~~~~~~~~~~-------~~q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~~ 302 (302)
T PF10318_consen 248 IPLIYFIISIIFGY-------YNQALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFRC 302 (302)
T ss_pred hhHHHHHHHHhccc-------cccccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhcC
Confidence 56665555443321 12345567777888999999999999999999999988875
No 39
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=98.18 E-value=0.00026 Score=67.76 Aligned_cols=69 Identities=10% Similarity=-0.012 Sum_probs=54.0
Q ss_pred hhhhhHHHHHHHHHH-HHhhhhhHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhHHHH
Q psy5093 330 KEKKAAKTLGIVMGV-FIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRSK 404 (662)
Q Consensus 330 ~~~~~~~~l~~i~~~-f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~ 404 (662)
-+++..|.+.+-+++ .+++..|-.+......++ .+...+...+.......-++++|+.-.+.-+.||++
T Consensus 240 lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif~------i~~~~~~n~~~~iAls~FPf~DPlAii~~lP~~R~r 309 (310)
T PF10319_consen 240 LQRQLFKALIVQTVIPICVSFSPCVLSWYGPIFG------IDLGRWNNYFSVIALSAFPFLDPLAIILCLPAFRNR 309 (310)
T ss_pred HHHHHHHHHHHHHHhHHHHhhccHHHHHhHHHHc------CChhHHHHHHHHHHHHHccccCchHhheecHHhhcc
Confidence 577778877766554 567888988887665553 445677888888888899999999999999999985
No 40
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=98.17 E-value=0.00026 Score=67.88 Aligned_cols=132 Identities=16% Similarity=0.119 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhh--ccccccccccchhHH
Q psy5093 51 RTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYEL--LDHNWIFGLNWCDSW 128 (662)
Q Consensus 51 ~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~--~~~~~~~~~~~C~~~ 128 (662)
..+...+-.+..++..+.|..++..+...|+.+++.-.++--..+.|.+.+....+....... ...+....+..--..
T Consensus 5 ~~iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~ 84 (273)
T PF10316_consen 5 AIIVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYI 84 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeeh
Confidence 345566667778888999999999888777744555556666799999998876553322222 111111011122233
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHh
Q psy5093 129 RSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGG 182 (662)
Q Consensus 129 ~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~ 182 (662)
++...............||+||.+|+..|..|++...+-....+++.+-..++.
T Consensus 85 ~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~~~I~~~~~~~~~~ 138 (273)
T PF10316_consen 85 GWPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRKKIPNFIIIIIALSYGLF 138 (273)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCccccHHHHHHHHHHHHHH
Confidence 444455556678889999999999999999887765555544444444333333
No 41
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=98.01 E-value=0.001 Score=65.68 Aligned_cols=112 Identities=11% Similarity=0.126 Sum_probs=81.2
Q ss_pred hhhhhHHHHHhHHHHHHHHHHHHHHHHHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCcccccc
Q psy5093 473 IFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNV 552 (662)
Q Consensus 473 ~~~~~~~f~lP~~ii~~~Y~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (662)
.....+..++|+++++++-..+...++||.|+++...++..
T Consensus 182 ~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~--------------------------------------- 222 (303)
T PF05296_consen 182 FILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFR--------------------------------------- 222 (303)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC---------------------------------------
Confidence 33344788999999999999999999999999875432210
Q ss_pred ccCCCCcccccCCcccccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchh
Q psy5093 553 MSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEE 632 (662)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~ 632 (662)
.-+.+++.|++|++...++.|+++++-..+...-..+. ..+
T Consensus 223 -------------------------------~ps~~aH~~a~k~~~sfl~ly~~~~~~~~~~~~~~~~~--------~~~ 263 (303)
T PF05296_consen 223 -------------------------------DPSTEAHIRAIKTMISFLILYIIYFLSLILSFLSFFFP--------ENS 263 (303)
T ss_pred -------------------------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccc
Confidence 00125789999999988888888776544432222221 123
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093 633 LISAVVTWLGWINSGMNPVIYACWSRDFRR 662 (662)
Q Consensus 633 ~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~ 662 (662)
.+..+...+.++.+...|+|=.+-|+++||
T Consensus 264 ~~~~~~~~i~~~yps~hs~iLIlgn~KLr~ 293 (303)
T PF05296_consen 264 IWFWVCEIIIALYPSGHSIILILGNPKLRQ 293 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 445667778899999999999999999885
No 42
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=97.99 E-value=2.5e-06 Score=82.01 Aligned_cols=131 Identities=17% Similarity=0.103 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHHHHhhHH
Q psy5093 55 VSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVL 134 (662)
Q Consensus 55 ~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 134 (662)
.++..+-+.+++++-.+.++++...|++|+..+....||++++++..+..+. ... ....+.....+..|...+.+..+
T Consensus 4 ~~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~-~~~-~~~~~~~~~~~~~C~~~a~~~hy 81 (242)
T PF00002_consen 4 SIISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLI-GIS-QTFSPISTTNHCLCRAIAILLHY 81 (242)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHhe-ehh-hccccccccccccchhhhhHhHH
Confidence 3445555666677766666666666788887788899999999988765443 111 11111111112249999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhh
Q psy5093 135 FSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWW 191 (662)
Q Consensus 135 ~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~ 191 (662)
+..++...+.+.+++-|..+..+.. ..+++.....+..|.++.++........
T Consensus 82 ~~la~f~Wm~~~~~~l~~~~~~~~~----~~~~~~~~~~~~gwg~P~~iv~i~~~~~ 134 (242)
T PF00002_consen 82 FFLASFFWMLVEAFYLYRLLVKVFN----SSRRRFWWYYLIGWGIPALIVVISVAVN 134 (242)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhheeEEEeec----ccchhhheeeeeeecCcceeeeeeeeec
Confidence 9999999999999999999987632 1244556677788999888777766554
No 43
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.66 E-value=0.014 Score=59.56 Aligned_cols=42 Identities=12% Similarity=0.025 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHhhccccchhhhhcChhHHHHHHHhcccCC
Q psy5093 372 EELISAVVTWLGWINSGMNPVIYACWSRDFRSKEKILNHKIS 413 (662)
Q Consensus 372 ~~~~~~~~~~l~~~ns~~nP~IY~~~~~~fR~~~~~l~~~~~ 413 (662)
......+......+++.+-|.+-....+..|+++++.+.+.+
T Consensus 282 ~~~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~~~ 323 (365)
T PF03125_consen 282 RTILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPKIR 323 (365)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhhhh
Confidence 445667777888899999999999999999999888776544
No 44
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=97.60 E-value=0.0032 Score=61.89 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093 589 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR 662 (662)
Q Consensus 589 ~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~ 662 (662)
.++++..-..++-..+++.++=|..+..+ ..++....+++..-.+|+..||+||-.+||..|+
T Consensus 237 ~~~qI~iQs~iIC~f~~i~a~iyv~m~f~-----------~~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~ 299 (313)
T PF10321_consen 237 AQRQIFIQSVIICFFHAIAAVIYVYMQFF-----------PPPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRN 299 (313)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHeeeee-----------cccHHHHHHHHHHHhccCCccceEEEEECHHHHH
Confidence 45555555555555556665555444322 2356677777878889999999999999999885
No 45
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.56 E-value=0.012 Score=58.65 Aligned_cols=110 Identities=11% Similarity=0.119 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhhheeccccccc-hhhHHHHHHHHHHHhhhhhcc-cHH-HHHhhc----ccccccccc
Q psy5093 51 RTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHT-STNYFIMSLALADCLVGLVVM-PFS-ALYELL----DHNWIFGLN 123 (662)
Q Consensus 51 ~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~-~~~~ll~~Lai~Dll~~l~~~-p~~-~~~~~~----~~~~~~~~~ 123 (662)
..+..++..++.++++++....+-.+.++.-..+ ...+++.+|..+++=-..... -.. +...+. ..+..+...
T Consensus 20 ~~~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~~~~~~~lyrsf~~~~dpC~i~f~~~ 99 (328)
T PF02117_consen 20 FRINQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYAIIQIWSLYRSFFYSDDPCSILFTSS 99 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeEeecC
Confidence 3445556667777888888888777777665554 556677777766644322211 111 112221 113445666
Q ss_pred chhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy5093 124 WCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTY 160 (662)
Q Consensus 124 ~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y 160 (662)
.|.....+..++.....+..+++.+||.+|-..|-.|
T Consensus 100 eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~ 136 (328)
T PF02117_consen 100 ECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYY 136 (328)
T ss_pred ceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhh
Confidence 7998888888888888999999999999999887544
No 46
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=97.46 E-value=0.00078 Score=65.96 Aligned_cols=165 Identities=14% Similarity=0.108 Sum_probs=97.5
Q ss_pred cCCcccccceeeeehhhHHHHHHhhchhhhhhcccccCCccCCCCceecCC-chhHhhhhhHHHHHhHHHHHHHHHHHHH
Q psy5093 418 LLPMCMYPQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTDS-KGYLIFSSTISFYLPLLVMVFTYFKIYR 496 (662)
Q Consensus 418 ~y~~~~~~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~-~~y~~~~~~~~f~lP~~ii~~~Y~~I~~ 496 (662)
.+....++.....+++.-|+.+.+..+|.+......-+.+++ -.-..+.+ .............+-+++.+++|..++.
T Consensus 110 ~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~cv~~iv~Y~~i~~ 188 (283)
T PF10323_consen 110 RHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDNEEN-MSLFVDPEFIQRNFLIAFIFVSVTCVICIVCYGIIFI 188 (283)
T ss_pred HHhhhccccchhheeeeeehhhhhheeeeeccCceeeecccc-eeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777788899999999999999955543322111111 11111111 1122233344455677788999999999
Q ss_pred HHHHhhhccccCcccccCCCCCCcccccccccCCCCCCCCCcccCCCCCCccccccccCCCCcccccCCccccccccccc
Q psy5093 497 AAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVK 576 (662)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (662)
.+||+.+...
T Consensus 189 ~iRk~~k~~s---------------------------------------------------------------------- 198 (283)
T PF10323_consen 189 FIRKRNKKKS---------------------------------------------------------------------- 198 (283)
T ss_pred HHHHhhhhhh----------------------------------------------------------------------
Confidence 9987763110
Q ss_pred ccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhc
Q psy5093 577 NFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACW 656 (662)
Q Consensus 577 ~~~~~~~~~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~ 656 (662)
.+..++.++|.|.+.+.+++++++++.- =|.+.....+...+ .........+...+.-..|.+||+.=-++
T Consensus 199 ----~~~s~~~~rE~~L~~~~~i~~~a~~~~~-~~~~~~~~~~~~~~----~~~~~~~r~~y~~~~~~~s~inP~~LLi~ 269 (283)
T PF10323_consen 199 ----KSSSRSRRREIRLAIQVFILFCAFFVIL-VYYIFSNYFAQNFN----TDPIFYLRAFYPILNGLLSFINPWMLLIF 269 (283)
T ss_pred ----HhhhhhhhHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccc----chHHHHHHHHHHHHHHHHHhhhhHHhhhc
Confidence 0112233577788777766665544433 34444444333221 11122333366677888999999999999
Q ss_pred cccccC
Q psy5093 657 SRDFRR 662 (662)
Q Consensus 657 ~~~fR~ 662 (662)
|+++||
T Consensus 270 n~~lr~ 275 (283)
T PF10323_consen 270 NKDLRK 275 (283)
T ss_pred cHHHHH
Confidence 999986
No 47
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=97.39 E-value=0.026 Score=55.22 Aligned_cols=121 Identities=12% Similarity=0.060 Sum_probs=79.7
Q ss_pred ccchhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCC
Q psy5093 122 LNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPK 201 (662)
Q Consensus 122 ~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~ 201 (662)
+..=++..++...+.+.+....++.++-|.+.+..|.++ +...++-.....-++.++++..+.|.+...+....-+.+.
T Consensus 100 n~~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~-~~i~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql~~Pf 178 (307)
T PF10322_consen 100 NHFLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNH-KKICRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQLDPPF 178 (307)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccch-hHHHHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeCCCCC
Confidence 344677788888999999999999999999999999765 3445555566777777788887777666544332211111
Q ss_pred Ccc------ccCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5093 202 NKC------PFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQT 243 (662)
Q Consensus 202 ~~c------~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~ 243 (662)
... ...+..........+....-.+.++++++.+++++|+.+
T Consensus 179 ~fGAI~I~~~~~~~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k 226 (307)
T PF10322_consen 179 PFGAIIITSTGSWFNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLK 226 (307)
T ss_pred CCCEEEEEEEcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 111222222333444455557788888999999998876
No 48
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=97.22 E-value=0.0013 Score=63.48 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093 589 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR 662 (662)
Q Consensus 589 ~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~ 662 (662)
+++|+.|.+.++++.|+.+|.=..+...+....+. +.+....+.....++...|.+.|-++|.++|+|||+
T Consensus 181 ~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~---~~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~ 251 (257)
T PF10320_consen 181 RSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGL---DGETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRK 251 (257)
T ss_pred hHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHH
Confidence 57889999999999999999888877777554432 233444566777889999999999999999999996
No 49
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=97.16 E-value=0.044 Score=53.07 Aligned_cols=126 Identities=16% Similarity=0.090 Sum_probs=72.0
Q ss_pred HHHHhhHhhhhheecccccc-chhhHHHHHHHHHHHhhhhhcccHHHHHhhccccccccccchhHHHHhhHHHHHHHHHH
Q psy5093 64 VTVFGNALVMIAVVRERYLH-TSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILN 142 (662)
Q Consensus 64 ~gl~gN~~vi~~i~~~~~lr-~~~~~ll~~Lai~Dll~~l~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~ 142 (662)
++++|..+++.-+.-+-+-| .++-.++.-+.++++...+=. +++.-...+|. +..|.+...+.......-...
T Consensus 3 ~s~i~~~l~i~Pl~wH~ra~N~~~~~li~Wl~l~nl~~~INa----iIW~~n~~~~~--~~wCDI~~kl~~~~~~g~~~a 76 (283)
T PF02076_consen 3 FSFIAFVLLIVPLPWHWRARNIGTCSLIFWLFLSNLIYFINA----IIWRDNDINWW--PVWCDISTKLIIGSSVGIPAA 76 (283)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhh----hhcCCCCCccC--ceeeeehHHHHHHHHHHHHHH
Confidence 34555555544443332223 477788889999998884432 22221122222 378999988877766665444
Q ss_pred HHHHHHHHhhhhcCCCCC--CccccchhhhHHHHHHHHHHHhhhhhHHHhhhcccc
Q psy5093 143 LCVISLDRYWAITDPLTY--PSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRN 196 (662)
Q Consensus 143 l~~iaidRy~~I~~P~~y--~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~ 196 (662)
.++|+-.=| .|..+... .+.-++|+..+=+.+++.+.++......+.......
T Consensus 77 ~lcI~r~L~-~I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~ 131 (283)
T PF02076_consen 77 SLCIMRRLY-RIASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIVQGHRFD 131 (283)
T ss_pred HHHHHHHHH-HHhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccee
Confidence 444444333 23333221 112236777778888888888887777776554433
No 50
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=97.04 E-value=0.27 Score=48.26 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhcccccc
Q psy5093 597 LGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 661 (662)
Q Consensus 597 ~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR 661 (662)
+..=.++|++||+|-.+-.+...+.+. +..+..+=..++-+.-.+|.++|++-++..+
T Consensus 204 L~~Yp~ifiicw~fa~INRI~~~~~~~-------~~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~ 261 (303)
T PF05462_consen 204 LVNYPLIFIICWIFATINRIYNFIGKN-------PFWLSVLHVGFSPLQGFFNSIVYGYNNSLMW 261 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-------chHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 445677999999999999998876421 2222222234566677889999998887543
No 51
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=96.70 E-value=0.67 Score=45.98 Aligned_cols=150 Identities=11% Similarity=0.110 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHhhHhhhhheeccccccchhhHHHHHHHHHHHhhhhhcccHHHH-Hhhcc--c---------ccccc
Q psy5093 54 LVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSAL-YELLD--H---------NWIFG 121 (662)
Q Consensus 54 ~~~~~~ii~i~gl~gN~~vi~~i~~~~~lr~~~~~ll~~Lai~Dll~~l~~~p~~~~-~~~~~--~---------~~~~~ 121 (662)
.-....+...+.++.+++.++++...++.-+-...-++-|+++-++.++..+.-.+. ..... . ....+
T Consensus 11 ~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~~~~~~~ 90 (328)
T PF01534_consen 11 ARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERILVQDGLE 90 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeEeecCCC
Confidence 344455555666666667666665554432333444555666665555443321111 01000 0 01224
Q ss_pred ccchhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCC
Q psy5093 122 LNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPK 201 (662)
Q Consensus 122 ~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~ 201 (662)
...|.+...+.+++..++...-+.+++.-|++-..... ..--.++....-++.|.++.+..+..+...... .+...
T Consensus 91 ~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~--~e~i~~~s~yfH~~aW~iP~~~ti~vL~~~~Vd--gD~lt 166 (328)
T PF01534_consen 91 NSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWG--SEAIEKKSSYFHLVAWGIPAVLTIAVLALRKVD--GDELT 166 (328)
T ss_pred CCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccC--cchhhhhcchhhhHHhhhhHHHHHHHHHhcccc--ccccc
Confidence 56799999999998888887778889999998876433 223345666778999999999888777654333 23344
Q ss_pred CccccC
Q psy5093 202 NKCPFT 207 (662)
Q Consensus 202 ~~c~~~ 207 (662)
+.|...
T Consensus 167 GiC~Vg 172 (328)
T PF01534_consen 167 GICFVG 172 (328)
T ss_pred ceeEEe
Confidence 556443
No 52
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=96.16 E-value=0.045 Score=53.56 Aligned_cols=66 Identities=15% Similarity=0.122 Sum_probs=44.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093 587 FAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR 662 (662)
Q Consensus 587 ~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~ 662 (662)
.++|.+..+-.+.--+.|++.++=|++..-+.. + ....+..+...-.+.-++|++|+..+|+++|+
T Consensus 202 ~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~~~--------~--~~~~F~~~t~~w~~~h~~DG~i~l~fN~~~r~ 267 (274)
T PF10328_consen 202 RRKEIRFFIQSFIQDLLYLIDLIFYFFIPPLSS--------N--RWWQFFCTTFSWVLVHALDGLIMLIFNSEIRR 267 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------c--cHHHHHHHHHHHHHHHHhcceeEeEEcHHHHH
Confidence 356888888888888888888887777754311 1 12222222222345677899999999999984
No 53
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=96.06 E-value=0.044 Score=48.49 Aligned_cols=96 Identities=10% Similarity=0.093 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhHhhhhheeccccccc--hhhHHHHHHHHHHHhhhhhcccHHHHH-----hhccc-cccccccchhHHHH
Q psy5093 59 SLFSLVTVFGNALVMIAVVRERYLHT--STNYFIMSLALADCLVGLVVMPFSALY-----ELLDH-NWIFGLNWCDSWRS 130 (662)
Q Consensus 59 ~ii~i~gl~gN~~vi~~i~~~~~lr~--~~~~ll~~Lai~Dll~~l~~~p~~~~~-----~~~~~-~~~~~~~~C~~~~~ 130 (662)
.++-..+.+.+.+.+..+.++|++.. ...+ ..+-+..-++.+|+.+.. .++.+ +-..+-..|.+..-
T Consensus 48 ~~v~~~s~~~s~~L~ifi~~rk~l~~~~ksTI-----vFaT~g~fvLtlP~~lf~~wl~~~l~~~~ep~ytI~vCSflk~ 122 (226)
T PF06681_consen 48 FIVNTVSWLFSYFLCIFIWRRKNLIRSYKSTI-----VFATFGQFVLTLPLYLFQTWLVFFLWFGHEPQYTIFVCSFLKN 122 (226)
T ss_pred HHHHhHHHHHHHHHHHHHhhhHHHHHhhcCeE-----EEeeHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeehHHHh
Confidence 34455566666666555666665321 1111 112222223345544332 22222 23346678998877
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy5093 131 LDVLFSTASILNLCVISLDRYWAITDPLT 159 (662)
Q Consensus 131 ~~~~~~~~s~~~l~~iaidRy~~I~~P~~ 159 (662)
+............+++|++||+.|..-.|
T Consensus 123 f~S~t~s~~~vip~aVAIyRy~~VV~k~r 151 (226)
T PF06681_consen 123 FTSSTTSCAQVIPVAVAIYRYLIVVLKKR 151 (226)
T ss_pred HHHHHhhhhccchhhhhhhhhheeeeccc
Confidence 77766666666677899999999997433
No 54
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=95.81 E-value=0.058 Score=40.19 Aligned_cols=70 Identities=14% Similarity=0.245 Sum_probs=53.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhhh-hHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhcccccc
Q psy5093 588 AKEKKAAKTLGIVMGVFIVCWL-PFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 661 (662)
Q Consensus 588 ~~~~k~~~~~~~vv~~f~icw~-P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR 661 (662)
++-+|.+|.+++==++|+++|+ |+.+-.+...... .+..+.++..++..+..+|..+|=++|++.-+.-|
T Consensus 5 ~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~----~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erpw~ 75 (76)
T PF11970_consen 5 KRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEI----GHGPSFWLFCIAGFMQPSQGFVDCLVFTLRERPWR 75 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCCCchHHHHHHHHHHHccCHHHhhheeeecccCC
Confidence 4566788899999999999999 8877666554221 23455677788888999999999999998876544
No 55
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=95.58 E-value=0.37 Score=47.69 Aligned_cols=70 Identities=20% Similarity=0.318 Sum_probs=55.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093 587 FAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR 662 (662)
Q Consensus 587 ~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~ 662 (662)
.+++|++.+.+++=.++-.+|-+|..+...+..... +.......+...+..++|.+|=++--+.++.|||
T Consensus 232 y~kHk~av~SLi~Q~~~~~i~~~P~~~~~~~~~~~~------~~~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~ 301 (303)
T PF10327_consen 232 YQKHKEAVRSLIAQFATSSICILPPFIFVVVVIFEF------EDAQVISEICLAIFSSHSSVNMIVLIITTPPYRK 301 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecC------CCcHHHHHHHHHHHHHhhHhhheeeeEcCcchhh
Confidence 358889999999888899999999999887655432 2233455666777888999999999999999996
No 56
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=95.03 E-value=0.078 Score=39.51 Aligned_cols=71 Identities=13% Similarity=0.245 Sum_probs=53.4
Q ss_pred hHHhhhhhHHHHHHHHHHHHhhhh-hHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhccccchhhhhcChhH
Q psy5093 327 KFAKEKKAAKTLGIVMGVFIVCWL-PFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDF 401 (662)
Q Consensus 327 ~~~~~~~~~~~l~~i~~~f~i~~~-P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~IY~~~~~~f 401 (662)
++++-+|.++.+++=-++|+++|+ |..+-.+ ....+. ......++..+...+..+|.++|-++|.++-+.-
T Consensus 3 ~r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~-~~~~~~---~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erpw 74 (76)
T PF11970_consen 3 RRKRIRRQLRSMFIYPLVYIVLWLFPFAAHRM-QYMYEI---GHGPSFWLFCIAGFMQPSQGFVDCLVFTLRERPW 74 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcc---CCCCchHHHHHHHHHHHccCHHHhhheeeecccC
Confidence 344677888999999999999999 6554444 333221 2444678889999999999999999999876543
No 57
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=94.30 E-value=0.12 Score=49.33 Aligned_cols=66 Identities=11% Similarity=0.178 Sum_probs=48.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhcccccc
Q psy5093 589 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 661 (662)
Q Consensus 589 ~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR 661 (662)
.|.||++++++++.+|+..+.--.++........+ ...+..+...++.+-+.+=|++---.+++..
T Consensus 195 pE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~~-------~~~~~~~~~~ls~cfptisPfvLI~~d~~i~ 260 (265)
T PF03402_consen 195 PETRATKTILLLVSTFVSFYGLSSILFIYLTSFKN-------SPWLLNISVFLSSCFPTISPFVLISSDKRII 260 (265)
T ss_pred hhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhcC-------CcceeEHHHHHhHHhHhhChHHhhccCchHH
Confidence 58899999999999999999988887654332221 1233445667788888999998777776654
No 58
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=94.16 E-value=0.52 Score=46.43 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Q psy5093 595 KTLGIVMGVFIVCWLPFFVVNLLSA 619 (662)
Q Consensus 595 ~~~~~vv~~f~icw~P~~i~~l~~~ 619 (662)
+..+.+.++|.+||+|..+-.++-.
T Consensus 244 ~kFf~I~lVF~iCWlpNIINg~LL~ 268 (405)
T PF02101_consen 244 IKFFKIMLVFYICWLPNIINGSLLF 268 (405)
T ss_pred HHHHHHHHHHHHHhhhhhHhHHHHH
Confidence 4477888999999999988877543
No 59
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=94.03 E-value=5 Score=37.10 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=41.4
Q ss_pred ccccccccchhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccc
Q psy5093 116 HNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRM 164 (662)
Q Consensus 116 ~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~ 164 (662)
.+-..++..+|.......+....+++.-..+++||++|...--+|.+..
T Consensus 76 CdLiI~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r 124 (236)
T PF02175_consen 76 CDLIIDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENTR 124 (236)
T ss_pred ceEEEchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCc
Confidence 4455677789999999999999999999999999999999877776543
No 60
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=92.83 E-value=8.8 Score=36.33 Aligned_cols=31 Identities=23% Similarity=0.552 Sum_probs=22.2
Q ss_pred CchhHhhhhhHHHHHhHHHHHHHHHHHHHHHH
Q psy5093 468 SKGYLIFSSTISFYLPLLVMVFTYFKIYRAAV 499 (662)
Q Consensus 468 ~~~y~~~~~~~~f~lP~~ii~~~Y~~I~~~~~ 499 (662)
..+.++...++.+.+|++|.+ .|+.|..++.
T Consensus 184 P~~IqiiE~ilQ~~IPi~Il~-iYiAIIiKI~ 214 (305)
T PF04789_consen 184 PRGIQIIEIILQFGIPIFILV-IYIAIIIKII 214 (305)
T ss_pred CCchhHHHHHHHHhHHHHHHH-HHHHHHHHHH
Confidence 456788999999999987754 4655555443
No 61
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=92.29 E-value=0.1 Score=44.57 Aligned_cols=61 Identities=11% Similarity=0.161 Sum_probs=49.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHHH
Q psy5093 129 RSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAIL 189 (662)
Q Consensus 129 ~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~~ 189 (662)
..+.++++....+...+|+++|...|.+|.+...++|.++.++-+++..++.+..-+.+.+
T Consensus 48 TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~ 108 (153)
T PF03383_consen 48 TLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYF 108 (153)
T ss_pred eeeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 4566777888889999999999999999998666899999998888777776665555544
No 62
>PF13853 7tm_4: Olfactory receptor
Probab=89.41 E-value=0.0052 Score=53.21 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=47.1
Q ss_pred eeeeehhhHHHHHHhhchhhhhhcccccCCc-cCCCCce---------e-cCCchhHhhhhhHHHHHhHHHHHHHHHHHH
Q psy5093 427 YLVLISLCYYVTTLVLTAPAILWWRAVRNEE-VPKNKCP---------F-TDSKGYLIFSSTISFYLPLLVMVFTYFKIY 495 (662)
Q Consensus 427 ~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~-~~~~~C~---------~-~~~~~y~~~~~~~~f~lP~~ii~~~Y~~I~ 495 (662)
....+...+|+.+++..+|.........+.+ .+...|+ + ..+..+.........+.|+++++++|++|.
T Consensus 2 ~c~~l~~~~~~~~~~~~l~~~~~~~~l~~~nii~~f~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il 81 (144)
T PF13853_consen 2 CCLLLAAGSWLSGLLNSLPHTLLTLSLCFCNIIHHFCCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRIL 81 (144)
T ss_pred EEehhhHHHHHHHHHHHHHHHHHHeeCCCCCCCcceeeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEE
Confidence 3456677899999988887665433332222 2222332 2 112334445555667899999999999999
Q ss_pred HHHHHh
Q psy5093 496 RAAVVQ 501 (662)
Q Consensus 496 ~~~~~~ 501 (662)
..+.|.
T Consensus 82 ~avlki 87 (144)
T PF13853_consen 82 RAVLKI 87 (144)
T ss_pred ehhhcc
Confidence 887654
No 63
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=88.28 E-value=3.6 Score=40.54 Aligned_cols=69 Identities=16% Similarity=0.299 Sum_probs=50.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093 588 AKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR 662 (662)
Q Consensus 588 ~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~ 662 (662)
+.+++.+|.+.+=.+.-+++..|-....++..+.+. + ....-.+...++.+-+.+||+++-.+-+-|||
T Consensus 220 ~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~~---~---~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~ 288 (292)
T PF10317_consen 220 SMHRQLVKGLTIQALLPLFFYIPGVIIYFLSQFTGY---E---HPFLEYLIFMLASLPPLIDPLITLYFVRPYRK 288 (292)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc---c---cHHHHHHHHHHHHHHHHhchHhheeeeHhHHH
Confidence 467788899998899999999988888877655432 1 12222334456778889999999998888875
No 64
>KOG4289|consensus
Probab=78.48 E-value=18 Score=42.31 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=39.7
Q ss_pred cccchhHHHHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccchhhhHHHHHHHHHHHhhhhhHH
Q psy5093 121 GLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAI 188 (662)
Q Consensus 121 ~~~~C~~~~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y~~~~t~~~~~~~i~~~w~~s~~~~~~~~ 188 (662)
..+.|.+...+..+.+.+..-.+.+-++.-|.....-. .........++.|.+..++....+
T Consensus 2222 nq~~CtvvailLhf~~~stFaWlfl~gLhlYRml~e~v------~tg~mrfy~~vGwgvPa~itglav 2283 (2531)
T KOG4289|consen 2222 NQFYCTVVAILLHFTYLSTFAWLFLEGLHLYRMLTENV------DTGPMRFYYLVGWGVPALITGLAV 2283 (2531)
T ss_pred CchhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC------CCCceeEEEEeecchhhheeeeee
Confidence 56789999988888888887777777777776666422 222222334456776666554433
No 65
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=73.95 E-value=89 Score=30.26 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=17.4
Q ss_pred HHHHhhhhhHHHHHhccccccC
Q psy5093 641 LGWINSGMNPVIYACWSRDFRR 662 (662)
Q Consensus 641 l~~~ns~iNPiiY~~~~~~fR~ 662 (662)
..=+-+...|++=-+++++.||
T Consensus 252 ~sD~ltl~~P~iLl~fs~~vR~ 273 (275)
T PF02118_consen 252 ASDLLTLSQPYILLIFSKNVRR 273 (275)
T ss_pred HHHHHHHHHHHHHheECHhhhc
Confidence 3335677789999999999986
No 66
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=69.01 E-value=1.1 Score=44.56 Aligned_cols=67 Identities=22% Similarity=0.370 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHH-HHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093 589 KEKKAAKTLGIV-MGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR 662 (662)
Q Consensus 589 ~~~k~~~~~~~v-v~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~ 662 (662)
-+++..+.+++= ++=++...+|..+..+...++-+. .....+...+..+-+++||++=-+.-|+||+
T Consensus 237 lq~QLf~aLv~Qt~iP~i~~~~P~~~~~~~p~~~i~~-------~~~~~~~~~~~~~yP~iDpl~~i~~ik~yR~ 304 (307)
T PF10326_consen 237 LQKQLFKALVIQTIIPFIFMYIPVFIVFILPFFGIDL-------GFFSNIISILISLYPAIDPLPVIFIIKDYRK 304 (307)
T ss_pred HHHHHHHHHHHHhhhhheeeecchhheeeeeccCCCC-------CccccHhhhhEEEEeehhhheeeEeeHHHHH
Confidence 345566655443 344567888999888775544221 1122234456667899999999999999996
No 67
>KOG4193|consensus
Probab=61.97 E-value=40 Score=36.85 Aligned_cols=73 Identities=12% Similarity=0.197 Sum_probs=39.1
Q ss_pred cceeeeehhhHHHHHHhhchhhhhhcccccCCccCCCCceecCCchhHhhhhhHHHHHhHHHHHHHHHHHHHHHHHhh
Q psy5093 425 PQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQT 502 (662)
Q Consensus 425 ~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~y~~~~~~~~f~lP~~ii~~~Y~~I~~~~~~~~ 502 (662)
+++........|..+++......+.....++.......|....+.+.... |+.|+.+++.+++.++..+-++.
T Consensus 424 ~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~CWl~~~~~~~~~-----F~GPv~~ii~~Ni~~Fv~t~~~l 496 (610)
T KOG4193|consen 424 RRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRVCWLDTQNGFIWS-----FLGPVTLIILVNIVMFVVTLKKL 496 (610)
T ss_pred chHHHHHHHHHhhhhHHHHhheeEEeccCccccccCCceEEecCCceEEE-----EehHHHHHHHHHHHHHHHHHHHH
Confidence 33334443466766666555544433332111112234855544432222 88999999999977776654443
No 68
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=61.71 E-value=1e+02 Score=29.83 Aligned_cols=113 Identities=12% Similarity=0.104 Sum_probs=57.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhhcCCCCC-CccccchhhhHHHHHHHHHHHhhhhhHHHhhhccccCCCCCCccccC
Q psy5093 129 RSLDVLFSTASILNLCVISLDRYWAITDPLTY-PSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFT 207 (662)
Q Consensus 129 ~~~~~~~~~~s~~~l~~iaidRy~~I~~P~~y-~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~~~~~~~~c~~~ 207 (662)
.+.......+--+.+.++|++|++.--.|-.- ....+.+.....+.....+.++..+................. .+
T Consensus 86 ~~~l~i~~~v~~lllsLLAIqRFllyFfP~~Ek~v~~~~k~~~~~I~~lY~~~~~k~i~~~~~~~~~~~~~~~~~---~~ 162 (267)
T PF10325_consen 86 IFILYIITQVFHLLLSLLAIQRFLLYFFPSSEKYVNFSQKNIKKIIWFLYIFFILKDIVFFIWYFISFNNESTEE---IE 162 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchh---hh
Confidence 33444444555667899999999999999631 222445555445555555444443333332211111110000 11
Q ss_pred CCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5093 208 DSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKS 245 (662)
Q Consensus 208 ~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~ 245 (662)
.............. +-..+..+.|+-|...+||.++-
T Consensus 163 ~~~~~~~~~~~~~~-~ll~~S~lLYIPI~isirK~~~l 199 (267)
T PF10325_consen 163 TFSYIYVIFYIILN-ILLFLSALLYIPIFISIRKLSHL 199 (267)
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHhhcc
Confidence 11111111222222 23566678899999999887653
No 69
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=59.62 E-value=1.8e+02 Score=28.58 Aligned_cols=68 Identities=12% Similarity=0.159 Sum_probs=42.9
Q ss_pred hhhhHHHHHHHHHHHH-HHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhccccccC
Q psy5093 588 AKEKKAAKTLGIVMGV-FIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR 662 (662)
Q Consensus 588 ~~~~k~~~~~~~vv~~-f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~ 662 (662)
+.+||..+.+.+=+++ +++.-.|............. ...+..+...+.-.+..+.-++.-+.++-+|+
T Consensus 226 k~Qkkfl~~l~iQ~~ip~~~l~~P~~~~~~~~~~~~~-------~q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~ 294 (302)
T PF10318_consen 226 KMQKKFLIALIIQVLIPFIFLFIPLIYFIISIIFGYY-------NQALNNISFIIISLHGIASTIVMILVHKPYRK 294 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-------ccccchHHHHHHHhccHHHHHHHhhccHHHHH
Confidence 3455666655544333 34555688777765443321 12344456667778888999999999998885
No 70
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=56.66 E-value=77 Score=29.11 Aligned_cols=49 Identities=10% Similarity=0.185 Sum_probs=36.3
Q ss_pred CccCCCCceecCC-chhHhhhhhHHHHHhHHHHHHHHHHHHHHHHHhhhc
Q psy5093 456 EEVPKNKCPFTDS-KGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKS 504 (662)
Q Consensus 456 ~~~~~~~C~~~~~-~~y~~~~~~~~f~lP~~ii~~~Y~~I~~~~~~~~~~ 504 (662)
+......|-.+.+ .++.+...-+--++-.+.+++.|..|+..+||+.|+
T Consensus 151 Y~~~g~WCWi~~~~~~~Rl~l~y~~~~~~~~~~i~iY~~if~~lrr~~~~ 200 (201)
T PF11710_consen 151 YGPAGAWCWIPSRYEWYRLWLHYIWRFIIIFAIIIIYIAIFFYLRRRIRR 200 (201)
T ss_pred ccccCcEEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3334567955443 356676666667788888999999999999998875
No 71
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=55.08 E-value=2.3e+02 Score=28.33 Aligned_cols=75 Identities=8% Similarity=0.090 Sum_probs=42.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHhhhhhHHHHHhcccccc
Q psy5093 585 SKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 661 (662)
Q Consensus 585 ~~~~~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR 661 (662)
-+.+++.|+.+++..++.+..+.-+-+.+..+......... +......+..+. ...-..+.+=|++.....++.|
T Consensus 223 YQl~ENl~slr~L~p~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~y~al~e~~-~~~P~Y~ii~~~~~~~~~k~~r 297 (324)
T PF10292_consen 223 YQLEENLRSLRLLKPFIILSSIFIFFYIFASIFLRLFNPSM-SKPNYFALAELN-HIFPLYSIISPLILYRKIKKIR 297 (324)
T ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-ChhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888899888888777777777766666554332211 111111122222 2333467777777776666554
No 72
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=52.53 E-value=1.3e+02 Score=29.68 Aligned_cols=47 Identities=13% Similarity=0.368 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhHhhhhheecccccc-chhhHHHHHHHHHHHhhhhhcc
Q psy5093 59 SLFSLVTVFGNALVMIAVVRERYLH-TSTNYFIMSLALADCLVGLVVM 105 (662)
Q Consensus 59 ~ii~i~gl~gN~~vi~~i~~~~~lr-~~~~~ll~~Lai~Dll~~l~~~ 105 (662)
-+.++++.+.|.+.++.+..+|+.+ ....++++.-|+-|++.+++-+
T Consensus 12 k~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~ 59 (310)
T PF10319_consen 12 KIFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDL 59 (310)
T ss_pred HHHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999888765 3778899999999999987643
No 73
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=49.80 E-value=1.1e+02 Score=29.99 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy5093 592 KAAKTLGIVMGVFIVCWLPFFVVNLLS 618 (662)
Q Consensus 592 k~~~~~~~vv~~f~icw~P~~i~~l~~ 618 (662)
|-.| ++.+.++.+++.+|..+..++.
T Consensus 196 Rf~R-L~~la~~~i~~~~P~~i~~~v~ 221 (283)
T PF02076_consen 196 RFFR-LLALALVIILIYLPLSIYYLVS 221 (283)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344 6677778899999999999983
No 74
>KOG2575|consensus
Probab=39.08 E-value=34 Score=34.39 Aligned_cols=26 Identities=31% Similarity=0.676 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhHHHHH
Q psy5093 590 EKKAAKTLGIVMGVFIVCWLPFFVVN 615 (662)
Q Consensus 590 ~~k~~~~~~~vv~~f~icw~P~~i~~ 615 (662)
-.|.++.-++|+++|++||+|+....
T Consensus 254 f~ri~~ia~~Vv~TF~iiw~P~~~~~ 279 (510)
T KOG2575|consen 254 FARIIKIALAVVGTFVIIWLPFLLSG 279 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56788889999999999999996654
No 75
>PF13853 7tm_4: Olfactory receptor
Probab=38.90 E-value=3.1 Score=35.90 Aligned_cols=73 Identities=21% Similarity=0.255 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhhhhHHHhhhccccCC-CCCCc---------cccCC-CcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5093 171 IWIAIVWICSGGISFPAILWWRAVRNEE-VPKNK---------CPFTD-SKGYLIFSSTISFYLPLLVMVFTYFKIYRAA 239 (662)
Q Consensus 171 ~~i~~~w~~s~~~~~~~~~~~~~~~~~~-~~~~~---------c~~~~-~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l 239 (662)
.+.+..|..+++.+++............ .+... |.+.. .+.+......+..+.|+.+++++|+.|.+.+
T Consensus 5 ~l~~~~~~~~~~~~l~~~~~~~~l~~~nii~~f~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~av 84 (144)
T PF13853_consen 5 LLAAGSWLSGLLNSLPHTLLTLSLCFCNIIHHFCCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRILRAV 84 (144)
T ss_pred hhhHHHHHHHHHHHHHHHHHHeeCCCCCCCcceeeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEEehh
Confidence 4566778888887777665432221111 11222 32222 2333444455556779999999999999988
Q ss_pred HHHh
Q psy5093 240 VVQT 243 (662)
Q Consensus 240 ~~~~ 243 (662)
.|..
T Consensus 85 lki~ 88 (144)
T PF13853_consen 85 LKIP 88 (144)
T ss_pred hccc
Confidence 7754
No 76
>KOG4564|consensus
Probab=38.11 E-value=32 Score=35.96 Aligned_cols=62 Identities=16% Similarity=0.234 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcccccCCcc-hhHHHHHHHHHHHHhhhhhHHHHHhcccccc
Q psy5093 589 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQD-EELISAVVTWLGWINSGMNPVIYACWSRDFR 661 (662)
Q Consensus 589 ~~~k~~~~~~~vv~~f~icw~P~~i~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR 661 (662)
..+|++|-.++++=+|-|-.+. ..+.++ +.. ......+-..|.-+.-.+==++|+|.|++.|
T Consensus 348 ~y~K~vKaTLvLIPLfGI~~il-------f~~~P~----~~~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq 410 (473)
T KOG4564|consen 348 QYRKLVKATLVLIPLFGIHYIL-------FAFRPD----EDTLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQ 410 (473)
T ss_pred HHHHHHHHHHHHHHHcCCeeEE-------EEecCc----hHHHHHHHHHHHHHHHhccchheehheeecCHHHH
Confidence 4677777777776565544222 222221 111 1222233344555666677789999998754
No 77
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=38.10 E-value=11 Score=35.98 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHH
Q psy5093 592 KAAKTLGIVMGVFIVCWLPFF 612 (662)
Q Consensus 592 k~~~~~~~vv~~f~icw~P~~ 612 (662)
+..+..+.+..++.++|+...
T Consensus 195 ~~~~~~~~L~~llg~~w~~~~ 215 (242)
T PF00002_consen 195 KILRASLILLPLLGITWLFGI 215 (242)
T ss_dssp ---------------------
T ss_pred hHHHHHHHHHHHHHHHheeee
Confidence 366777777888889998743
No 78
>KOG1056|consensus
Probab=37.56 E-value=3e+02 Score=31.49 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhheeccccc-------cchhhHHHHHHHHH
Q psy5093 52 TLLVSTLSLFSLVTVFGNALVMIAVVRERYL-------HTSTNYFIMSLALA 96 (662)
Q Consensus 52 ~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~l-------r~~~~~ll~~Lai~ 96 (662)
....++..++.++|++.-++++.++.+..+. |.-.++++.++.+.
T Consensus 559 ~~~~i~~l~lA~LGii~tl~vlv~fvr~~~TpvVkasgreLsyiLL~gi~l~ 610 (878)
T KOG1056|consen 559 SPWSIAPLLLAILGIIATLFVLVLFVRYNDTPVVKASGRELSYILLLGIFLC 610 (878)
T ss_pred ccccHHHHHHHHHHHHHHHHhheeEEEecCCceEEecCcEehHHHHHHHHHH
Confidence 3455788888899999998888888877543 34556766666543
No 79
>PF00003 7tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR; InterPro: IPR017978 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents the C-terminal region of family 3 GPCR receptor proteins, which contains the seven transmembrane region. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness []. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=36.18 E-value=45 Score=31.56 Aligned_cols=24 Identities=25% Similarity=-0.036 Sum_probs=14.7
Q ss_pred cccchhHHHHhhHHHHHHHHHHHH
Q psy5093 121 GLNWCDSWRSLDVLFSTASILNLC 144 (662)
Q Consensus 121 ~~~~C~~~~~~~~~~~~~s~~~l~ 144 (662)
++..|....++.........-.+.
T Consensus 52 s~~~C~~r~~~~~l~f~l~~~~ll 75 (238)
T PF00003_consen 52 SDILCTLRRWLFSLGFTLIFSALL 75 (238)
T ss_pred CCcEEEEeeeeeeeehHhhhhHHH
Confidence 466799887776665544444443
No 80
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=32.86 E-value=76 Score=22.36 Aligned_cols=21 Identities=14% Similarity=0.406 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhh
Q psy5093 589 KEKKAAKTLGIVMGVFIVCWL 609 (662)
Q Consensus 589 ~~~k~~~~~~~vv~~f~icw~ 609 (662)
+.+|.-.+++.++++|++-|+
T Consensus 34 ~~~~~~~i~~~~~i~~l~v~~ 54 (59)
T PF09889_consen 34 RMRKTQYIFFGIFILFLAVWI 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666655553
No 81
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=29.38 E-value=4.5e+02 Score=24.09 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHHHHhhhhhH
Q psy5093 332 KKAAKTLGIVMGVFIVCWLPF 352 (662)
Q Consensus 332 ~~~~~~l~~i~~~f~i~~~P~ 352 (662)
.-+..-+++|.++|+||-+-+
T Consensus 128 ~amLIClIIIAVLfLICT~Lf 148 (227)
T PF05399_consen 128 MAMLICLIIIAVLFLICTLLF 148 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344455556667777775543
No 82
>PF15050 SCIMP: SCIMP protein
Probab=28.71 E-value=1.4e+02 Score=24.23 Aligned_cols=33 Identities=6% Similarity=0.093 Sum_probs=16.1
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5093 209 SKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVV 241 (662)
Q Consensus 209 ~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~ 241 (662)
...+.++..+...++.+++=++.|..-.+.+|+
T Consensus 5 r~nFWiiLAVaII~vS~~lglIlyCvcR~~lRq 37 (133)
T PF15050_consen 5 RDNFWIILAVAIILVSVVLGLILYCVCRWQLRQ 37 (133)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555555555555555545555444444443
No 83
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=26.18 E-value=6.5e+02 Score=24.95 Aligned_cols=22 Identities=0% Similarity=0.022 Sum_probs=14.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHhh
Q psy5093 481 YLPLLVMVFTYFKIYRAAVVQT 502 (662)
Q Consensus 481 ~lP~~ii~~~Y~~I~~~~~~~~ 502 (662)
..-++.+++.+...++++|+..
T Consensus 205 ~~~~~~iii~N~lm~~Klr~~k 226 (307)
T PF10322_consen 205 IFWMISIIILNILMFFKLRKLK 226 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556777778888887654
No 84
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=25.03 E-value=3.9e+02 Score=21.96 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=19.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhHhhhhhe
Q psy5093 48 AQQRTLLVSTLSLFSLVTVFGNALVMIAV 76 (662)
Q Consensus 48 ~~~~~i~~~~~~ii~i~gl~gN~~vi~~i 76 (662)
++..+++++++.+++.+.++...++.+--
T Consensus 40 pwK~I~la~~Lli~G~~li~~g~l~~~~~ 68 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVLIIIGLLLFFGH 68 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46667777777777777777776665443
No 85
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=23.05 E-value=7.1e+02 Score=24.30 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHhhhhheecccc-ccchhhHHHHHHHHHHHhhhhh
Q psy5093 49 QQRTLLVSTLSLFSLVTVFGNALVMIAVVRERY-LHTSTNYFIMSLALADCLVGLV 103 (662)
Q Consensus 49 ~~~~i~~~~~~ii~i~gl~gN~~vi~~i~~~~~-lr~~~~~ll~~Lai~Dll~~l~ 103 (662)
.....++.++.+++++|++= ++....|.++ ..++...|.+-+.++.++-++.
T Consensus 26 ~~~~~La~iy~~v~~~aliQ---l~ri~~r~~~~~~t~qkvf~ll~~l~~~~R~iy 78 (281)
T PF06454_consen 26 GLFYALAAIYLLVALVALIQ---LIRIQYRVPKYGWTTQKVFHLLIFLANLVRAIY 78 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhheeEeccccCccHHHHHHHHHHHHHHHHeEE
Confidence 34455666666666666554 2233334333 2355556666566666666554
No 86
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=21.36 E-value=2.3e+02 Score=20.80 Aligned_cols=37 Identities=16% Similarity=0.359 Sum_probs=24.0
Q ss_pred hhHhhhhhHHHHHhHHHH-HHHHHHHHHHHHHhhhccc
Q psy5093 470 GYLIFSSTISFYLPLLVM-VFTYFKIYRAAVVQTKSLK 506 (662)
Q Consensus 470 ~y~~~~~~~~f~lP~~ii-~~~Y~~I~~~~~~~~~~~~ 506 (662)
+|..+..++.-+.|+.++ .++-.+....+.++.++.+
T Consensus 19 P~~Fl~~vll~LtPlfiisa~lSwkLaK~ie~~ere~K 56 (74)
T PF15086_consen 19 PYEFLTTVLLILTPLFIISAVLSWKLAKAIEKEEREKK 56 (74)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777887776 4555667777766665543
No 87
>COG2322 Predicted membrane protein [Function unknown]
Probab=20.19 E-value=3e+02 Score=24.10 Aligned_cols=103 Identities=17% Similarity=0.033 Sum_probs=0.0
Q ss_pred chhhHHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHhhcccc-chhhhhcChhHH
Q psy5093 324 KLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMN-PVIYACWSRDFR 402 (662)
Q Consensus 324 ~~~~~~~~~~~~~~l~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~n-P~IY~~~~~~fR 402 (662)
++++.++++++..+.......|+++++-.....-=..+++ .......+.+..+.-.+-+++| |+.+.. .-
T Consensus 68 krg~i~~Hk~aMltA~~l~l~FlvlYltr~~l~~~t~f~~-----~G~~k~~Y~~iL~~Hi~LA~i~vPLal~a----l~ 138 (177)
T COG2322 68 KRGNIEKHKRAMLTAFTLALVFLVLYLTRHGLGGETAFGG-----TGIYKGIYFFILITHIILAAINVPLALYA----LI 138 (177)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC-----CeeeehHHHHHHHHHHHHHHHhhhHHHHH----HH
Q ss_pred HHHHHhcccCCcccccCCcccccceeeeehhhHHHHHHhhchhhhh
Q psy5093 403 SKEKILNHKISPVVFLLPMCMYPQYLVLISLCYYVTTLVLTAPAIL 448 (662)
Q Consensus 403 ~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~w~~~~~~~~p~~~ 448 (662)
.++++...| ++++.-.....|+...+......+
T Consensus 139 ~a~~~~~~r-------------Hrki~r~ta~~Wlyva~tGv~VYL 171 (177)
T COG2322 139 LAWKGLYER-------------HRKIGRWTAPLWLYVALTGVVVYL 171 (177)
T ss_pred HHhcchhhh-------------hheeeehhhHHHHHHHHHHHHHhh
No 88
>PF15069 FAM163: FAM163 family
Probab=20.14 E-value=5.5e+02 Score=21.92 Aligned_cols=24 Identities=13% Similarity=0.263 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy5093 220 SFYLPLLVMVFTYFKIYRAAVVQT 243 (662)
Q Consensus 220 ~~~ip~~ii~~~y~~I~~~l~~~~ 243 (662)
.+++-+++.++||.++.+.-.|+.
T Consensus 15 tVILLcIIaVLCYCRLQYYCCKK~ 38 (143)
T PF15069_consen 15 TVILLCIIAVLCYCRLQYYCCKKN 38 (143)
T ss_pred HHHHHHHHHHHHHHhhHHHHhhcc
Confidence 344557788899999888766543
Done!