RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5093
(662 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 160 bits (407), Expect = 6e-45
Identities = 60/187 (32%), Positives = 91/187 (48%), Gaps = 6/187 (3%)
Query: 74 IAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDV 133
+ ++R + L T TN F+++LA+AD L L + P++ Y + W FG C L V
Sbjct: 1 LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGD-WPFGDALCKLVGFLFV 59
Query: 134 LFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRA 193
+ ASIL L IS+DRY AI PL Y + RRA + I +VW+ + +S P +L+
Sbjct: 60 VNGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWL 119
Query: 194 VRNEEVPKNKCPFTD-----SKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKV 248
EE C + Y + S+ + F LPLLV++ Y I R + +S
Sbjct: 120 RTVEEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGAS 179
Query: 249 GTKQVMS 255
+ S
Sbjct: 180 QARAKRS 186
Score = 76.6 bits (189), Expect = 2e-15
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 304 VSNTRIIHK--GHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAV 361
V T I+ S +R +KE+KAAK L +V+ VF++CWLP+ +V LL ++
Sbjct: 161 VCYTLILRTLRKRARSGASQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSL 220
Query: 362 CTKCFWSEQDEELISAVVTWLGWINSGMNPVIY 394
C W + + WL ++NS +NP+IY
Sbjct: 221 CPLSIW--RLLPTALLITLWLAYVNSCLNPIIY 251
Score = 76.6 bits (189), Expect = 2e-15
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 563 VSNTRIIHK--GHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAV 620
V T I+ S +R +KE+KAAK L +V+ VF++CWLP+ +V LL ++
Sbjct: 161 VCYTLILRTLRKRARSGASQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSL 220
Query: 621 CTKCFWSEQDEELISAVVTWLGWINSGMNPVIY 653
C W + + WL ++NS +NP+IY
Sbjct: 221 CPLSIW--RLLPTALLITLWLAYVNSCLNPIIY 251
Score = 46.5 bits (111), Expect = 2e-05
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 428 LVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTD-----SKGYLIFSSTISFYL 482
VLI + + + L+ P + W EE C + Y + S+ + F L
Sbjct: 96 KVLILVVWVLALLLSLPPLLFSWL-RTVEEGNVTTCLIDFPEESTKRSYTLLSTLLGFVL 154
Query: 483 PLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMS 514
PLLV++ Y I R + +S + S
Sbjct: 155 PLLVILVCYTLILRTLRKRARSGASQARAKRS 186
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 67.9 bits (166), Expect = 3e-12
Identities = 48/191 (25%), Positives = 90/191 (47%), Gaps = 11/191 (5%)
Query: 52 TLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALY 111
L+V ++F + GN +V I V+ + + T + ++++LA++D L+ ++ +PF Y
Sbjct: 42 ILIVVYSTIFFF-GLVGNIIV-IYVLTKTKIKTPMDIYLLNLAVSD-LLFVMTLPFQIYY 98
Query: 112 ELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYI 171
+L W FG C L + S+ + V+S+DRY AI P+ + + YI
Sbjct: 99 YILF-QWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYI 157
Query: 172 WIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYL------IFSSTISFYLPL 225
++WI S + P IL+ + + C F ++K + I +PL
Sbjct: 158 VSLVIWIISIIETTP-ILFVYTTKKDHETLICCMFYNNKTMNWKLFINFEINIIGMLIPL 216
Query: 226 LVMVFTYFKIY 236
++++ Y KI
Sbjct: 217 TILLYCYSKIL 227
Score = 31.7 bits (72), Expect = 1.3
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 323 RKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDE----ELISAV 378
+ ++K K KKA K + I++ +F++ WLPF V + ++ F S + V
Sbjct: 231 KGINKSKKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHV 290
Query: 379 VTWLGWINSGMNPVIYACWSRDFRSKEK 406
+ + +NP+IYA S F +K
Sbjct: 291 TEIISLSHCCINPLIYAFVSEFFNKHKK 318
Score = 30.5 bits (69), Expect = 2.6
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 582 RKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDE----ELISAV 637
+ ++K K KKA K + I++ +F++ WLPF V + ++ F S + V
Sbjct: 231 KGINKSKKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHV 290
Query: 638 VTWLGWINSGMNPVIYACWSRDF 660
+ + +NP+IYA S F
Sbjct: 291 TEIISLSHCCINPLIYAFVSEFF 313
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 47.3 bits (112), Expect = 2e-05
Identities = 62/275 (22%), Positives = 122/275 (44%), Gaps = 33/275 (12%)
Query: 2 ELLPADFINNVDFFSNSSNWTYIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVST---L 58
E++P + + NS++ + +TYD+ + L + + + S +
Sbjct: 42 EIIPTEIPTSESPSPNSNSSSSSSSSSSSITYDYEYENNITYELINIKNKCMYPSISEYI 101
Query: 59 SLFSLVT----VFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELL 114
+F ++ +FGNA + I ++ + + T T+ +I +LA++D L+ ++ PF +Y
Sbjct: 102 KIFYIIIFILGLFGNAAI-IMILFCKKIKTITDIYIFNLAISD-LIFVIDFPF-IIYNEF 158
Query: 115 DHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIA 174
D WIFG C + + +++ + ++S+DRY+AI P+++ + I
Sbjct: 159 DQ-WIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCI 217
Query: 175 IVWICSGGISFPA--------ILWWRAVRNEEVPKNKCPFTDS---------KGYLIFSS 217
I WI S I+ PA I++ NE + +C + L F
Sbjct: 218 ISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQCTLIEDNEKNNISFLGRILQFEI 277
Query: 218 TI-SFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTK 251
I ++P+++ F Y KI +++ K LK K
Sbjct: 278 NILGMFIPIIIFAFCYIKI----ILKLKQLKKSKK 308
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 41.4 bits (97), Expect = 0.001
Identities = 40/190 (21%), Positives = 93/190 (48%), Gaps = 17/190 (8%)
Query: 53 LLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYE 112
+ L +F L+ GN LV+ ++ +R++ + ++ ++A++D ++ + PF +
Sbjct: 33 VFYILLFIFGLI---GNVLVIAVLIVKRFMFV-VDVYLFNIAMSDLML-VFSFPFIIHND 87
Query: 113 LLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIW 172
L + WIFG C + + +++ + +IS+DRY + + ++ + +
Sbjct: 88 L--NEWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKNKSISLSVLLS 145
Query: 173 IAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISF-------YLPL 225
+A W+CS +S PA++ + + + +C F D +S+ +F +PL
Sbjct: 146 VA-AWVCSVILSMPAMVLYYVDNTDNL--KQCIFNDYHENFSWSAFFNFEINIFGIVIPL 202
Query: 226 LVMVFTYFKI 235
+++++ Y KI
Sbjct: 203 IILIYCYSKI 212
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 38.7 bits (91), Expect = 0.005
Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 21/185 (11%)
Query: 62 SLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALAD--CLVGLVVMPFSALYELLDHNWI 119
S++ +FGN +++I +++ L + +Y I LAD CL G ++
Sbjct: 1 SVIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLSGEIIFVVLLFTGTQLTR-- 58
Query: 120 FGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWI--AIVW 177
N C + TA + +I +DR A+ P+ Y R+ + Y++I
Sbjct: 59 ---NECFLIIIPYIFGQTAQSPLMLMIGIDRLIAVKFPIFY--RLLSSSKYLFIQLIFPV 113
Query: 178 ICSGGISFPAILWWRAVRNEEVPKNKC--PF---TDSKGYLIFSSTISFYLPLLVMVFTY 232
I S I L R++E C P + SS I + L+V +
Sbjct: 114 IYSSFILVYGFL----ERDDETI-IVCAPPLALNGTAFRIFTLSSVIINVIVLIVYIILI 168
Query: 233 FKIYR 237
+
Sbjct: 169 IIFKK 173
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 34.5 bits (80), Expect = 0.12
Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 4/128 (3%)
Query: 60 LFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWI 119
L SL + N L+ ++ L S + A+++ ++ + + + LLD +
Sbjct: 2 LISLFGIILNWLIFYIFLKLPSLKNSFGILCANKAISNAIICTIFLFYVVPMTLLDLS-- 59
Query: 120 FGLNWCDSWRSLDVLFSTASILNLC--VISLDRYWAITDPLTYPSRMSTRRAYIWIAIVW 177
F +S +L I L +ISL+R+ A+ P Y S + I I +W
Sbjct: 60 FLPELLNSHIGGLILLGLYEISPLTHLLISLNRFCAVFFPFKYKKIFSIKNTKIIITFIW 119
Query: 178 ICSGGISF 185
I + IS
Sbjct: 120 IIAIIIST 127
>gnl|CDD|183012 PRK11172, dkgB, 2,5-diketo-D-gluconate reductase B; Provisional.
Length = 267
Score = 34.6 bits (80), Expect = 0.12
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 24/90 (26%)
Query: 272 GTDHRHMTLHHTPS--DDVEMDNVMSG-----HNGITRQ--VSNTRI---------IHKG 313
TD+ +TL H PS D+V ++ M G+TR+ +SN I +
Sbjct: 87 RTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGAE 146
Query: 314 HIVKN-FSLS-----RKLSKFAKEKKAAKT 337
+I N LS RK+ FAKE T
Sbjct: 147 NIATNQIELSPYLQNRKVVAFAKEHGIHVT 176
Score = 34.6 bits (80), Expect = 0.12
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 24/90 (26%)
Query: 531 GTDHRHMTLHHTPS--DDVEMDNVMSG-----HNGITRQ--VSNTRI---------IHKG 572
TD+ +TL H PS D+V ++ M G+TR+ +SN I +
Sbjct: 87 RTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGAE 146
Query: 573 HIVKN-FSLS-----RKLSKFAKEKKAAKT 596
+I N LS RK+ FAKE T
Sbjct: 147 NIATNQIELSPYLQNRKVVAFAKEHGIHVT 176
>gnl|CDD|223043 PHA03323, PHA03323, nuclear egress membrane protein UL34;
Provisional.
Length = 272
Score = 29.3 bits (66), Expect = 6.3
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 149 DRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAV 194
+ ++ PL P + T R I+ I G+ A LWW
Sbjct: 229 RGWASLASPLRAPRSVPTVRISAAPIILVIL--GVLLGARLWWAYG 272
>gnl|CDD|131167 TIGR02112, cyd_oper_ybgE, cyd operon protein YbgE. This model
describes a small protein of unknown function, about 100
amino acids in length, essentially always found in an
operon with CydAB, subunits of the cytochrome d terminal
oxidase. It appears to be an integral membrane protein.
It is found so far only in the Proteobacteria [Energy
metabolism, Electron transport].
Length = 93
Score = 26.9 bits (60), Expect = 9.8
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 16/73 (21%)
Query: 156 DPLTYPSRMSTRRAYIWIAIVW-ICSG---GISF-PAILWWRAVRNEEVPKNKCPFTDSK 210
DP + + + A + + ++W +C G+ F P W+ + F+
Sbjct: 31 DPNRFAAAIGGFNAVLALLMIWAVCILWIHGVGFRPRSTLWQLL-----------FSPIL 79
Query: 211 GYLIFSSTISFYL 223
GY+I + +
Sbjct: 80 GYIILIYLLIVFF 92
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.137 0.437
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 33,697,010
Number of extensions: 3280148
Number of successful extensions: 4281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4267
Number of HSP's successfully gapped: 65
Length of query: 662
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 559
Effective length of database: 6,369,140
Effective search space: 3560349260
Effective search space used: 3560349260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (27.6 bits)