RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5093
(662 letters)
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 344 bits (884), Expect = e-112
Identities = 92/418 (22%), Positives = 154/418 (36%), Gaps = 47/418 (11%)
Query: 26 IDDDVVTYDFVSNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTS 85
+ F + ++ ++ +++ + GN LV AV L
Sbjct: 6 ALSYIFCLVFADYKDDDDGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNV 65
Query: 86 TNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCV 145
TNYF++SLA AD VG++ +PF+ + + C ++ + +SI +L
Sbjct: 66 TNYFVVSLAAADIAVGVLAIPFAITIST---GFCAACHGCLFIACFVLVLTQSSIFSLLA 122
Query: 146 ISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCP 205
I++DRY AI PL Y ++ RA IAI W+ S I +L W + KN
Sbjct: 123 IAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQ 182
Query: 206 -------------FTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQ 252
+ F+ +PLL+M+ Y +I+ AA Q L+ +
Sbjct: 183 GCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLEDNWET 242
Query: 253 VMSGSTSGEKELTLRIHRGGTDHRHMTL------------HHTPSDDVEMDNVMSGHNGI 300
+ EK + +P D +
Sbjct: 243 LNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILV 302
Query: 301 TRQVSNTRIIHKGHI----------------VKNFSLSRKLSKFAKEKKAAKTLGIVMGV 344
+ ++ ++G + L R S KE AAK+L I++G+
Sbjct: 303 GQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGL 362
Query: 345 FIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
F +CWLP ++N + C C + + + L NS +NP IYA R+FR
Sbjct: 363 FALCWLPLHIINCFTFFCPDCSHA---PLWLMYLAIVLSHTNSVVNPFIYAYRIREFR 417
Score = 144 bits (363), Expect = 2e-37
Identities = 53/276 (19%), Positives = 94/276 (34%), Gaps = 45/276 (16%)
Query: 428 LVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCP-------------FTDSKGYLIF 474
+I++C+ V + + +L W + KN + F
Sbjct: 147 KGIIAICW-VLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYF 205
Query: 475 SSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDH 534
+ +PLL+M+ Y +I+ AA Q L+ + + EK +
Sbjct: 206 NFFACVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTK 265
Query: 535 RHMTL------------HHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHI-------- 574
+P D + + ++ ++G +
Sbjct: 266 MRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAE 325
Query: 575 --------VKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFW 626
L R S KE AAK+L I++G+F +CWLP ++N + C C
Sbjct: 326 QLKTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSH 385
Query: 627 SEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR 662
+ + + L NS +NP IYA R+FR+
Sbjct: 386 A---PLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQ 418
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 342 bits (878), Expect = e-110
Identities = 128/392 (32%), Positives = 178/392 (45%), Gaps = 63/392 (16%)
Query: 17 NSSNWTYIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAV 76
S W + T + + + +SL L VFGN LV+ A+
Sbjct: 148 AKSRWYNQTPNRAKRVITTFRTGTWDAYAADEVWVVGMGIVMSLIVLAIVFGNVLVITAI 207
Query: 77 VRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFS 136
+ L T TNYFI SLA AD ++GL V+PF A + L W FG WC+ W S+DVL
Sbjct: 208 AKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKT-WTFGNFWCEFWTSIDVLCV 266
Query: 137 TASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISF-PAILWWRAVR 195
TASI LCVI++DRY+AIT P Y S ++ +A + I +VWI SG SF P + W
Sbjct: 267 TASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRAT 326
Query: 196 NEEVPK-----NKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGT 250
++E C F ++ Y I SS +SFY+PL++MVF Y ++++ A Q + +
Sbjct: 327 HQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKI---- 382
Query: 251 KQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRII 310
D H VE D
Sbjct: 383 -----------------------DKSEGRFHVQNLSQVEQDGRTGHGL------------ 407
Query: 311 HKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQ 370
R KE KA KTLGI+MG F +CWLPFF+VN++ + E
Sbjct: 408 -----------RRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE- 455
Query: 371 DEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
+ ++ W+G++NSG NP+IY S DFR
Sbjct: 456 ----VYILLNWIGYVNSGFNPLIYC-RSPDFR 482
Score = 141 bits (356), Expect = 6e-36
Identities = 64/240 (26%), Positives = 96/240 (40%), Gaps = 61/240 (25%)
Query: 428 LVLISLCYYVTTLVLTAPAILWWRAVRNEEVPK-----NKCPFTDSKGYLIFSSTISFYL 482
V+I + + V+ L P + W ++E C F ++ Y I SS +SFY+
Sbjct: 300 RVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYV 359
Query: 483 PLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHT 542
PL++MVF Y ++++ A Q + + D H
Sbjct: 360 PLVIMVFVYSRVFQEAKRQLQKI---------------------------DKSEGRFHVQ 392
Query: 543 PSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMG 602
VE D R KE KA KTLGI+MG
Sbjct: 393 NLSQVEQDGRTGHGL-----------------------RRSSKFCLKEHKALKTLGIIMG 429
Query: 603 VFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR 662
F +CWLPFF+VN++ + E + ++ W+G++NSG NP+IY S DFR
Sbjct: 430 TFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGFNPLIYC-RSPDFRI 483
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 288 bits (738), Expect = 4e-90
Identities = 92/321 (28%), Positives = 145/321 (45%), Gaps = 12/321 (3%)
Query: 10 NNVDFFSNSSNWTYIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVSTLSLFSLVTVFGN 69
+ D N + + + + + + + +SL L VFGN
Sbjct: 3 KDDDAMGQPGNGSAFLLAP---NRSHAPDHDVTQQRDEVW-VVGMGIVMSLIVLAIVFGN 58
Query: 70 ALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWR 129
LV+ A+ + L T TNYFI SLA AD ++GL V+PF A + L+ W FG WC+ W
Sbjct: 59 VLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEFWT 117
Query: 130 SLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISF-PAI 188
S+DVL TASI LCVI++DRY+AIT P Y S ++ +A + I +VWI SG SF P
Sbjct: 118 SIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ 177
Query: 189 LWWRAVRNEEVPKN-----KCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQT 243
+ W ++E C F ++ Y I SS +SFY+PL++MVF Y ++++ A Q
Sbjct: 178 MHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQL 237
Query: 244 KSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQ 303
++ K+ G + + + NG+ +
Sbjct: 238 NIFEMLRIDEGL-RLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITK 296
Query: 304 VSNTRIIHKGHIVKNFSLSRK 324
++ ++ + R
Sbjct: 297 DEAEKLFNQDVDAAVRGILRN 317
Score = 97.5 bits (242), Expect = 2e-21
Identities = 38/149 (25%), Positives = 56/149 (37%), Gaps = 6/149 (4%)
Query: 514 SGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGH 573
+ + + G T T D +
Sbjct: 327 LDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVI 386
Query: 574 IVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEEL 633
KE KA KTLGI+MG F +CWLPFF+VN++ + +
Sbjct: 387 TTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIR-----KE 441
Query: 634 ISAVVTWLGWINSGMNPVIYACWSRDFRR 662
+ ++ W+G++NSG NP+IY C S DFR
Sbjct: 442 VYILLNWIGYVNSGFNPLIY-CRSPDFRI 469
Score = 95.9 bits (238), Expect = 5e-21
Identities = 38/148 (25%), Positives = 56/148 (37%), Gaps = 6/148 (4%)
Query: 255 SGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGH 314
+ + + G T T D +
Sbjct: 327 LDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVI 386
Query: 315 IVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEEL 374
KE KA KTLGI+MG F +CWLPFF+VN++ + +
Sbjct: 387 TTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIR-----KE 441
Query: 375 ISAVVTWLGWINSGMNPVIYACWSRDFR 402
+ ++ W+G++NSG NP+IY C S DFR
Sbjct: 442 VYILLNWIGYVNSGFNPLIY-CRSPDFR 468
Score = 79.4 bits (195), Expect = 1e-15
Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 6/161 (3%)
Query: 428 LVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKN-----KCPFTDSKGYLIFSSTISFYL 482
V+I + + V+ L P + W ++E C F ++ Y I SS +SFY+
Sbjct: 158 RVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYV 217
Query: 483 PLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHT 542
PL++MVF Y ++++ A Q ++ K+ G +
Sbjct: 218 PLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGL-RLKIYKDTEGYYTIGIGHLLTKSPSLN 276
Query: 543 PSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSLSRK 583
+ + NG+ + ++ ++ + R
Sbjct: 277 AAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRN 317
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 285 bits (731), Expect = 2e-89
Identities = 79/268 (29%), Positives = 134/268 (50%), Gaps = 13/268 (4%)
Query: 50 QRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSA 109
+ +V SLVT+ GN LVM+++ R+L T NYF+ SLA AD ++G+ M
Sbjct: 22 EVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYT 81
Query: 110 LYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRA 169
LY ++ + W G CD W +LD + S AS++NL +IS DRY+ +T PLTYP + +T+ A
Sbjct: 82 LYTVIGY-WPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMA 140
Query: 170 YIWIAIVWICSGGISFPAILWWR---AVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLL 226
+ IA W+ S + PAIL+W+ VR E + F + ++ +FYLP++
Sbjct: 141 GMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYIQFFSNAAVTFGTAIAAFYLPVI 200
Query: 227 VMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSD 286
+M Y+ I RA+ + + ++ L L+I++ + + + H +
Sbjct: 201 IMTVLYWHISRASKSRINIFE---------MLRIDEGLRLKIYKDTEGYYTIGIGHLLTK 251
Query: 287 DVEMDNVMSGHNGITRQVSNTRIIHKGH 314
++ S + + +N I
Sbjct: 252 SPSLNAAKSELDKAIGRNTNGVITKDEA 279
Score = 100 bits (250), Expect = 1e-22
Identities = 27/157 (17%), Positives = 50/157 (31%), Gaps = 5/157 (3%)
Query: 506 KVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSN 565
K+ + + + G T T D
Sbjct: 299 KLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQT 358
Query: 566 TRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCF 625
+ ++EKK +T+ ++ FI+ W P+ V+ L++ C C
Sbjct: 359 PNRAKRVITTFRTGTWDAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCI 418
Query: 626 WSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR 662
+ + WL +INS +NP YA + F++
Sbjct: 419 -----PNTVWTIGYWLCYINSTINPACYALCNATFKK 450
Score = 99.0 bits (246), Expect = 3e-22
Identities = 27/156 (17%), Positives = 49/156 (31%), Gaps = 5/156 (3%)
Query: 247 KVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSN 306
K+ + + + G T T D
Sbjct: 299 KLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQT 358
Query: 307 TRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCF 366
+ ++EKK +T+ ++ FI+ W P+ V+ L++ C C
Sbjct: 359 PNRAKRVITTFRTGTWDAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCI 418
Query: 367 WSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
+ + WL +INS +NP YA + F+
Sbjct: 419 -----PNTVWTIGYWLCYINSTINPACYALCNATFK 449
Score = 77.1 bits (189), Expect = 4e-15
Identities = 27/137 (19%), Positives = 56/137 (40%), Gaps = 12/137 (8%)
Query: 440 LVLTAPAILWWR---AVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYR 496
+L APAIL+W+ VR E + F + ++ +FYLP+++M Y+ I R
Sbjct: 152 FILWAPAILFWQFIVGVRTVEDGECYIQFFSNAAVTFGTAIAAFYLPVIIMTVLYWHISR 211
Query: 497 AAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGH 556
A+ + + ++ L L+I++ + + + H + ++ S
Sbjct: 212 ASKSRINIFE---------MLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSEL 262
Query: 557 NGITRQVSNTRIIHKGH 573
+ + +N I
Sbjct: 263 DKAIGRNTNGVITKDEA 279
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 280 bits (716), Expect = 2e-87
Identities = 78/243 (32%), Positives = 116/243 (47%), Gaps = 7/243 (2%)
Query: 50 QRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSA 109
Q LV LS LVTV N LV+ AV ER LHT N +I+SL++AD +VG VVMP +
Sbjct: 7 QLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNI 66
Query: 110 LYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRA 169
LY L+ W G C W S+D + STASI ++ ++ +DRY ++ PL Y + RA
Sbjct: 67 LYLLMSK-WSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRA 125
Query: 170 YIWIAIVWICSGGISFPAILWWRAVRNEEVPKN---KCPFTDSKGYLIFSSTISFYLPLL 226
I W S P + W ++ V + + F D + + ++ I+FYLP L
Sbjct: 126 SATILGAWFLSFLWVIPILGWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINFYLPTL 185
Query: 227 VMVFTYFKIYRAAVVQTKSL---KVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHT 283
+M++ Y KIY+A ++ + E T+ I T + +
Sbjct: 186 LMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKS 245
Query: 284 PSD 286
D
Sbjct: 246 ELD 248
Score = 100 bits (249), Expect = 2e-22
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 579 SLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVV 638
+E+KAAK LG +M FI+CW+P+F+ ++ A C C E +
Sbjct: 357 GTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCCN-----EHLHMFT 411
Query: 639 TWLGWINSGMNPVIYACWSRDFRR 662
WLG+INS +NP+IY + +F++
Sbjct: 412 IWLGYINSTLNPLIYPLCNENFKK 435
Score = 98.6 bits (245), Expect = 5e-22
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 320 SLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVV 379
+E+KAAK LG +M FI+CW+P+F+ ++ A C C E +
Sbjct: 357 GTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCCN-----EHLHMFT 411
Query: 380 TWLGWINSGMNPVIYACWSRDFR 402
WLG+INS +NP+IY + +F+
Sbjct: 412 IWLGYINSTLNPLIYPLCNENFK 434
Score = 75.5 bits (185), Expect = 1e-14
Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 7/124 (5%)
Query: 428 LVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKN---KCPFTDSKGYLIFSSTISFYLPL 484
I + + + P + W ++ V + + F D + + ++ I+FYLP
Sbjct: 126 SATILGAW-FLSFLWVIPILGWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINFYLPT 184
Query: 485 LVMVFTYFKIYRAAVVQTKSL---KVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHH 541
L+M++ Y KIY+A ++ + E T+ I T +
Sbjct: 185 LLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAK 244
Query: 542 TPSD 545
+ D
Sbjct: 245 SELD 248
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 279 bits (715), Expect = 5e-87
Identities = 85/287 (29%), Positives = 130/287 (45%), Gaps = 16/287 (5%)
Query: 23 YIDIDD----DVVTYDFVSNFTLER----WLELAQQRTLLVSTLSLFSLVTVFGNALVMI 74
Y D DD + N+T A+ + L VFGN LV +
Sbjct: 2 YKDDDDGAPASLSQLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCM 61
Query: 75 AVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVL 134
AV++ER L T+TNY ++SLA+AD LV +VMP+ E+ W F CD + +LDV+
Sbjct: 62 AVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVM 121
Query: 135 FSTASILNLCVISLDRYWAITDPLTYP---SRMSTRRAYIWIAIVWICSGGISFPAILWW 191
TASI NLC IS+DRY A+ P+ Y + S RR + I VW+ + +S P + +
Sbjct: 122 MCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGF 181
Query: 192 RAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTK 251
+ V C ++ ++I+SS +SFYLP V V Y +IY + +
Sbjct: 182 NTTGDPTV----CSISN-PDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEML 236
Query: 252 QVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHN 298
++ G + T + G H + E+D + +
Sbjct: 237 RIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNT 283
Score = 102 bits (256), Expect = 3e-23
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 579 SLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVV 638
+EKKA + + IV+G FIVCWLPFF+ ++L+ C C S + + +
Sbjct: 385 GTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPE----LYSAT 440
Query: 639 TWLGWINSGMNPVIYACWSRDFRR 662
TWLG++NS +NPVIY ++ +FR+
Sbjct: 441 TWLGYVNSALNPVIYTTFNIEFRK 464
Score = 101 bits (252), Expect = 7e-23
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 320 SLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVV 379
+EKKA + + IV+G FIVCWLPFF+ ++L+ C C S + + +
Sbjct: 385 GTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPE----LYSAT 440
Query: 380 TWLGWINSGMNPVIYACWSRDFRS 403
TWLG++NS +NPVIY ++ +FR
Sbjct: 441 TWLGYVNSALNPVIYTTFNIEFRK 464
Score = 72.9 bits (178), Expect = 1e-13
Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 6/130 (4%)
Query: 428 LVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVM 487
++I+ + V ++ P + + + V C ++ ++I+SS +SFYLP V
Sbjct: 160 ALMITAVW-VLAFAVSCPLLFGFNTTGDPTV----CSISN-PDFVIYSSVVSFYLPFGVT 213
Query: 488 VFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDV 547
V Y +IY + + ++ G + T + G H +
Sbjct: 214 VLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKS 273
Query: 548 EMDNVMSGHN 557
E+D + +
Sbjct: 274 ELDKAIGRNT 283
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 266 bits (681), Expect = 7e-82
Identities = 63/253 (24%), Positives = 103/253 (40%), Gaps = 19/253 (7%)
Query: 50 QRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSA 109
++ ++ +++ + GN LV AV L TNYF++SLA AD VG++ +PF+
Sbjct: 20 GSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAI 79
Query: 110 LYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRA 169
+ + C ++ + +SI +L I++DRY AI PL Y ++ RA
Sbjct: 80 TIST---GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRA 136
Query: 170 YIWIAIVWICSGGISFPAILWWRAVRNEEVPKNK----------CPFTDS---KGYLIFS 216
IAI W+ S I +L W + KN C F D + F+
Sbjct: 137 KGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFN 196
Query: 217 STISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSG---EKELTLRIHRGGT 273
+PLL+M+ Y +I+ AA Q ++ E T+ I T
Sbjct: 197 FFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLT 256
Query: 274 DHRHMTLHHTPSD 286
+ + D
Sbjct: 257 KSPSLNAAKSELD 269
Score = 110 bits (275), Expect = 1e-25
Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 4/149 (2%)
Query: 514 SGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGH 573
+ + + ++ G +L + V + Q N R
Sbjct: 315 AVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPN-RAKRVIT 373
Query: 574 IVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEEL 633
+ + S KE AAK+L I++G+F +CWLP ++N + C C
Sbjct: 374 TFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC---SHAPLW 430
Query: 634 ISAVVTWLGWINSGMNPVIYACWSRDFRR 662
+ + L NS +NP IYA R+FR+
Sbjct: 431 LMYLAIVLSHTNSVVNPFIYAYRIREFRQ 459
Score = 108 bits (271), Expect = 3e-25
Identities = 34/148 (22%), Positives = 56/148 (37%), Gaps = 4/148 (2%)
Query: 255 SGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGH 314
+ + + ++ G +L + V + Q N R
Sbjct: 315 AVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPN-RAKRVIT 373
Query: 315 IVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEEL 374
+ + S KE AAK+L I++G+F +CWLP ++N + C C
Sbjct: 374 TFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC---SHAPLW 430
Query: 375 ISAVVTWLGWINSGMNPVIYACWSRDFR 402
+ + L NS +NP IYA R+FR
Sbjct: 431 LMYLAIVLSHTNSVVNPFIYAYRIREFR 458
Score = 65.1 bits (158), Expect = 3e-11
Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 17/134 (12%)
Query: 428 LVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNK----------CPFTDS---KGYLIF 474
+I++C+ V + + +L W + KN C F D + F
Sbjct: 137 KGIIAICW-VLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYF 195
Query: 475 SSTISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSG---EKELTLRIHRGG 531
+ +PLL+M+ Y +I+ AA Q ++ E T+ I
Sbjct: 196 NFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLL 255
Query: 532 TDHRHMTLHHTPSD 545
T + + D
Sbjct: 256 TKSPSLNAAKSELD 269
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 257 bits (658), Expect = 1e-80
Identities = 87/213 (40%), Positives = 120/213 (56%), Gaps = 7/213 (3%)
Query: 49 QQRTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFS 108
Q + ++L L+ V GN LV+ A+ + L T TN FI SLA AD +VGL+V+PF
Sbjct: 9 QWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFG 68
Query: 109 ALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRR 168
A + W++G C+ W SLDVL TASI LCVI++DRY AIT P Y S M+ R
Sbjct: 69 ATLVVRGT-WLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRAR 127
Query: 169 AYIWIAIVWICSGGISFPAIL--WWRAVRNEEV----PKNKCPFTDSKGYLIFSSTISFY 222
A + I VW S +SF I+ WWR + + C F ++ Y I SS ISFY
Sbjct: 128 AKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFY 187
Query: 223 LPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMS 255
+PLL+M+F ++YR A Q + + +K+ S
Sbjct: 188 IPLLIMIFVALRVYREAKEQIRKIDRASKRKTS 220
Score = 89.8 bits (223), Expect = 7e-20
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 570 HKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQ 629
I + +E KA KTLGI+MGVF +CWLPFF+VN+++
Sbjct: 207 QIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLV---- 262
Query: 630 DEELISAVVTWLGWINSGMNPVIYACWSRDFRR 662
+ + WLG+ NS MNP+IY S DFR+
Sbjct: 263 -PDWLFVAFNWLGYANSAMNPIIYC-RSPDFRK 293
Score = 88.6 bits (220), Expect = 2e-19
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 311 HKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQ 370
I + +E KA KTLGI+MGVF +CWLPFF+VN+++
Sbjct: 207 QIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLV---- 262
Query: 371 DEELISAVVTWLGWINSGMNPVIYACWSRDFRS 403
+ + WLG+ NS MNP+IY S DFR
Sbjct: 263 -PDWLFVAFNWLGYANSAMNPIIYC-RSPDFRK 293
Score = 65.1 bits (159), Expect = 1e-11
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 428 LVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKN-----KCPFTDSKGYLIFSSTISFYL 482
V+I + ++ LV P ++ W + + K C F ++ Y I SS ISFY+
Sbjct: 129 KVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYI 188
Query: 483 PLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMS 514
PLL+M+F ++YR A Q + + +K+ S
Sbjct: 189 PLLIMIFVALRVYREAKEQIRKIDRASKRKTS 220
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 211 bits (537), Expect = 8e-61
Identities = 51/274 (18%), Positives = 94/274 (34%), Gaps = 9/274 (3%)
Query: 15 FSNSSNWTYIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMI 74
SS Y++ D V Y++ + E L L + N V++
Sbjct: 29 AHRSSVSDYVNYDIIVRHYNYTGKLNISADKE--NSIKLTSVVFILICCFIILENIFVLL 86
Query: 75 AVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVL 134
+ + + H YFI +LAL+D L G+ L + +
Sbjct: 87 TIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGA--TTYKLTPAQWFLREGSMFV 144
Query: 135 FSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAV 194
+AS+ +L I+++RY + + + R ++ I+ W+ S + I+ W +
Sbjct: 145 ALSASVFSLLAIAIERYITMLKMK-LHNGSNNFRLFLLISACWVISLILGGLPIMGWNCI 203
Query: 195 RNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKI--YRAAVVQTKSLKVGTKQ 252
K Y++F T F L LL +V Y +I + L++
Sbjct: 204 SALSSCST-VLPLYHKHYILF-CTTVFTLLLLSIVILYCRIYSLVRTRNIFEMLRIDEGL 261
Query: 253 VMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSD 286
+ E T+ I T + + D
Sbjct: 262 RLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELD 295
Score = 101 bits (252), Expect = 9e-23
Identities = 31/142 (21%), Positives = 50/142 (35%), Gaps = 4/142 (2%)
Query: 521 KELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSL 580
+ ++ G +L + V + Q N
Sbjct: 348 INMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTW- 406
Query: 581 SRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTW 640
S+ ++ KT+ IV+ VFI CW P F++ LL C D +
Sbjct: 407 DAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVK---TCDILFRAEYFLV 463
Query: 641 LGWINSGMNPVIYACWSRDFRR 662
L +NSG NP+IY +++ RR
Sbjct: 464 LAVLNSGTNPIIYTLTNKEMRR 485
Score = 99 bits (248), Expect = 3e-22
Identities = 30/141 (21%), Positives = 49/141 (34%), Gaps = 4/141 (2%)
Query: 262 KELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKNFSL 321
+ ++ G +L + V + Q N
Sbjct: 348 INMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTW- 406
Query: 322 SRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTW 381
S+ ++ KT+ IV+ VFI CW P F++ LL C D +
Sbjct: 407 DAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVK---TCDILFRAEYFLV 463
Query: 382 LGWINSGMNPVIYACWSRDFR 402
L +NSG NP+IY +++ R
Sbjct: 464 LAVLNSGTNPIIYTLTNKEMR 484
Score = 48.7 bits (115), Expect = 4e-06
Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 5/120 (4%)
Query: 428 LVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVM 487
+LIS C+ V +L+L I+ W + K Y++F T F L LL +
Sbjct: 179 FLLISACW-VISLILGGLPIMGWNCISALSSCST-VLPLYHKHYILFC-TTVFTLLLLSI 235
Query: 488 VFTYFKI--YRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSD 545
V Y +I + L++ + E T+ I T + + D
Sbjct: 236 VILYCRIYSLVRTRNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELD 295
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 149 bits (379), Expect = 4e-40
Identities = 48/222 (21%), Positives = 97/222 (43%), Gaps = 9/222 (4%)
Query: 22 TYIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRERY 81
+ +D D+ + ++++ A Q L + ++ + +V GN +VM ++ +
Sbjct: 3 NVLPVDSDLSPNISTNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKR 62
Query: 82 LHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASIL 141
+ T TNYF+++LA A+ + + Y + + W +GL +C + ASI
Sbjct: 63 MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNE-WYYGLFYCKFHNFFPIAAVFASIY 121
Query: 142 NLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNE---- 197
++ ++ DRY AI PL R+S + I ++W+ + ++FP +
Sbjct: 122 SMTAVAFDRYMAIIHPLQ--PRLSATATKVVICVIWVLALLLAFPQGYYSTTETMPSRVV 179
Query: 198 --EVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYR 237
K Y I + + ++LPLLV+ + Y +
Sbjct: 180 CMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGI 221
Score = 65.5 bits (160), Expect = 2e-11
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 566 TRIIHK--GHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTK 623
T + + S R + + ++K K + +V+ F +CWLPF + LL +
Sbjct: 217 TVVGITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPD 276
Query: 624 CFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR 662
+ + + + + WL ++ NP+IY C + FR
Sbjct: 277 LYLKKF-IQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRL 314
Score = 64.3 bits (157), Expect = 3e-11
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 307 TRIIHK--GHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTK 364
T + + S R + + ++K K + +V+ F +CWLPF + LL +
Sbjct: 217 TVVGITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPD 276
Query: 365 CFWSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
+ + + + + WL ++ NP+IY C + FR
Sbjct: 277 LYLKKF-IQQVYLAIMWLAMSSTMYNPIIYCCLNDRFR 313
Score = 32.3 bits (74), Expect = 0.53
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 469 KGYLIFSSTISFYLPLLVMVFTYFKIYR 496
K Y I + + ++LPLLV+ + Y +
Sbjct: 194 KVYHICVTVLIYFLPLLVIGYAYTVVGI 221
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 143 bits (362), Expect = 3e-37
Identities = 56/225 (24%), Positives = 96/225 (42%), Gaps = 8/225 (3%)
Query: 52 TLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALY 111
L + + ++ GN +V+ + + L T N FI++LA +D LV
Sbjct: 35 YSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTI 94
Query: 112 ELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYI 171
WIFG C + + +F SI+ + +IS+DRY I P+ +MS RRA+I
Sbjct: 95 SCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFI 154
Query: 172 WIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPF------TDSKGYLIFSSTISFYLPL 225
I VW+ S + I W A E V N C F + ++ ++ + F+ P+
Sbjct: 155 MIIFVWLWSVLWAIGPIFGWGAYTLEGVLCN-CSFDYISRDSTTRSNILCMFILGFFGPI 213
Query: 226 LVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHR 270
L++ F YF I + K + K+ ++ + +
Sbjct: 214 LIIFFCYFNIVMSVSNHEKEMAAMAKR-LNAKELRKAQAGANAEM 257
Score = 56.9 bits (137), Expect = 1e-08
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 579 SLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVV 638
L + + E + AK +++ F++ W P+ VV LL+ + + + +
Sbjct: 245 ELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVT----PYAAQLP 300
Query: 639 TWLGWINSGMNPVIYACWSRDFRR 662
++ NP+IY+ FR
Sbjct: 301 VMFAKASAIHNPMIYSVSHPKFRE 324
Score = 55.7 bits (134), Expect = 2e-08
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 320 SLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVV 379
L + + E + AK +++ F++ W P+ VV LL+ + + + +
Sbjct: 245 ELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVT----PYAAQLP 300
Query: 380 TWLGWINSGMNPVIYACWSRDFR 402
++ NP+IY+ FR
Sbjct: 301 VMFAKASAIHNPMIYSVSHPKFR 323
Score = 43.0 bits (101), Expect = 2e-04
Identities = 17/107 (15%), Positives = 42/107 (39%), Gaps = 8/107 (7%)
Query: 429 VLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPF------TDSKGYLIFSSTISFYL 482
++ + ++ +++ I W A E V N C F + ++ ++ + F+
Sbjct: 153 FIMIIFVWLWSVLWAIGPIFGWGAYTLEGVLCN-CSFDYISRDSTTRSNILCMFILGFFG 211
Query: 483 PLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGEKELTLRIHR 529
P+L++ F YF I + K + K+ ++ + +
Sbjct: 212 PILIIFFCYFNIVMSVSNHEKEMAAMAKR-LNAKELRKAQAGANAEM 257
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 137 bits (348), Expect = 5e-36
Identities = 46/234 (19%), Positives = 100/234 (42%), Gaps = 20/234 (8%)
Query: 13 DFFSNSSNWTYIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALV 72
+F+ SN T + ++ + E W Q ++L + + L ++ N L
Sbjct: 9 NFYVPFSNKTGVVRSP----FEAPQYYLAEPW-----QFSMLAAYMFLLIMLGFPINFLT 59
Query: 73 MIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLD 132
+ V+ + L T NY +++LA+AD + + L ++FG C+
Sbjct: 60 LYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLH-GYFVFGPTGCNLEGFFA 118
Query: 133 VLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWR 192
L ++ +L V++++RY + P+ R A + +A W+ + + P ++ W
Sbjct: 119 TLGGEIALWSLVVLAIERYVVVCKPM-SNFRFGENHAIMGVAFTWVMALACAAPPLVGWS 177
Query: 193 AVRNEEVPKNKC--------PFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRA 238
E + + C T+++ ++I+ + F +PL+V+ F Y ++
Sbjct: 178 RYIPEGM-QCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFT 230
Score = 49.3 bits (118), Expect = 2e-06
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 590 EKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMN 649
EK+ + + I++ F++CWLP+ V + + + + ++ N
Sbjct: 248 EKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFG----PIFMTIPAFFAKTSAVYN 303
Query: 650 PVIYACWSRDFRR 662
PVIY ++ FR
Sbjct: 304 PVIYIMMNKQFRN 316
Score = 48.5 bits (116), Expect = 4e-06
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 331 EKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMN 390
EK+ + + I++ F++CWLP+ V + + + + ++ N
Sbjct: 248 EKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFG----PIFMTIPAFFAKTSAVYN 303
Query: 391 PVIYACWSRDFRS 403
PVIY ++ FR+
Sbjct: 304 PVIYIMMNKQFRN 316
Score = 37.0 bits (86), Expect = 0.019
Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 429 VLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKC--------PFTDSKGYLIFSSTISF 480
++ +V L AP ++ W E + + C T+++ ++I+ + F
Sbjct: 155 IMGVAFTWVMALACAAPPLVGWSRYIPEGM-QCSCGIDYYTPHEETNNESFVIYMFVVHF 213
Query: 481 YLPLLVMVFTYFKIYRA 497
+PL+V+ F Y ++
Sbjct: 214 IIPLIVIFFCYGQLVFT 230
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 138 bits (350), Expect = 2e-35
Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 7/192 (3%)
Query: 51 RTLLVSTLSLFSLVTVFGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSAL 110
+++ S+ +V +FGN LVM +VR + T+TN +I +LALAD + +PF ++
Sbjct: 17 AITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALAD-ALATSTLPFQSV 75
Query: 111 YELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAY 170
L+ W FG C S+D SI LC +S+DRY A+ P+ + R A
Sbjct: 76 NYLMGT-WPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAK 134
Query: 171 IWIAIVWICSGGISFPAILWWRAVRNEEVPKNKCPFTDS-----KGYLIFSSTISFYLPL 225
I WI S I P + + F+ I +F +P+
Sbjct: 135 IVNVCNWILSSAIGLPVMFMATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPV 194
Query: 226 LVMVFTYFKIYR 237
L++ Y +
Sbjct: 195 LIITVCYGLMIL 206
Score = 64.6 bits (157), Expect = 4e-11
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 567 RIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFW 626
R+I + + + ++ + + +V+ VFIVCW P + ++ A+ T
Sbjct: 359 RVITTFRTGTWDAYEKDRNL----RRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPET 414
Query: 627 SEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR 662
+ Q + LG+ NS +NPV+YA +F+R
Sbjct: 415 TFQT--VSWHFCIALGYTNSCLNPVLYAFLDENFKR 448
Score = 63.5 bits (154), Expect = 9e-11
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 308 RIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFW 367
R+I + + + ++ + + +V+ VFIVCW P + ++ A+ T
Sbjct: 359 RVITTFRTGTWDAYEKDRNL----RRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPET 414
Query: 368 SEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
+ Q + LG+ NS +NPV+YA +F+
Sbjct: 415 TFQT--VSWHFCIALGYTNSCLNPVLYAFLDENFK 447
Score = 40.4 bits (94), Expect = 0.002
Identities = 9/77 (11%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 425 PQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTDS-----KGYLIFSSTIS 479
P+ ++++C ++ + + P + + F+ I +
Sbjct: 130 PRNAKIVNVCNWILSSAIGLPVMFMATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFA 189
Query: 480 FYLPLLVMVFTYFKIYR 496
F +P+L++ Y +
Sbjct: 190 FIMPVLIITVCYGLMIL 206
Score = 29.6 bits (66), Expect = 3.6
Identities = 4/56 (7%), Positives = 15/56 (26%)
Query: 323 RKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAV 378
+L + + + ++ + + + + EL A+
Sbjct: 206 LRLKSVRNIFEMLRIDEGLRLKIYKNTEGYYTIGIGHLLTKSPSLNAAKSELDKAI 261
Score = 29.6 bits (66), Expect = 3.6
Identities = 4/56 (7%), Positives = 15/56 (26%)
Query: 582 RKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAV 637
+L + + + ++ + + + + EL A+
Sbjct: 206 LRLKSVRNIFEMLRIDEGLRLKIYKNTEGYYTIGIGHLLTKSPSLNAAKSELDKAI 261
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 134 bits (340), Expect = 3e-34
Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 12/230 (5%)
Query: 16 SNSSNWTYIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVSTLSLFSLVTVF---GNALV 72
+N + + N ++++L L V+ + L+ V V GN LV
Sbjct: 89 ANEGKVKEAQAAAEQLKTT--RNAYIQKYLGAFLPLGLKVTIVGLYLAVCVGGLLGNCLV 146
Query: 73 MIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLD 132
M ++R + T+TN +I +LALAD LV L+ +PF LL W FG C + ++D
Sbjct: 147 MYVILRHTKMKTATNIYIFNLALADTLV-LLTLPFQGTDILLGF-WPFGNALCKTVIAID 204
Query: 133 VLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWR 192
S L +S+DRY AI P+ ++ +A +W + + P +
Sbjct: 205 YYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGS 264
Query: 193 AVRNEEVPKNKCPFTDS-----KGYLIFSSTISFYLPLLVMVFTYFKIYR 237
A +E + + I SF +P+LV+ Y + R
Sbjct: 265 AQVEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIR 314
Score = 69.5 bits (170), Expect = 1e-12
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 566 TRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCF 625
+ +I + V+ S SR+ + ++ + + +V+ VF+ CW P V L + +
Sbjct: 310 SLMIRRLRGVRLLSGSREKDR--NLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPS 367
Query: 626 WSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFRR 662
I T LG++NS +NP++YA +F+
Sbjct: 368 SETAV--AILRFCTALGYVNSCLNPILYAFLDENFKA 402
Score = 68.3 bits (167), Expect = 3e-12
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 307 TRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCF 366
+ +I + V+ S SR+ + ++ + + +V+ VF+ CW P V L + +
Sbjct: 310 SLMIRRLRGVRLLSGSREKDR--NLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPS 367
Query: 367 WSEQDEELISAVVTWLGWINSGMNPVIYACWSRDFR 402
I T LG++NS +NP++YA +F+
Sbjct: 368 SETAV--AILRFCTALGYVNSCLNPILYAFLDENFK 401
Score = 36.7 bits (85), Expect = 0.021
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Query: 425 PQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTDS-----KGYLIFSSTIS 479
+++ + V+ P + A +E + + I S
Sbjct: 238 SSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEEIECLVEIPTPQDYWGPVFAICIFLFS 297
Query: 480 FYLPLLVMVFTYFKIYR 496
F +P+LV+ Y + R
Sbjct: 298 FIVPVLVISVCYSLMIR 314
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 131 bits (332), Expect = 6e-33
Identities = 46/234 (19%), Positives = 96/234 (41%), Gaps = 7/234 (2%)
Query: 10 NNVDFFSNSSNWTYIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVSTL-SLFSLVTVFG 68
++ S +T + +++ + D+ S E A + + T+ S+ L + G
Sbjct: 6 DDAGAPEGISIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVG 65
Query: 69 NALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSW 128
N LV++ + ++ L + T+ + + L++AD L ++ +PF A+ + NW FG C +
Sbjct: 66 NGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWAVDAV--ANWYFGNFLCKAV 122
Query: 129 RSLDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAI 188
+ + +S+ L ISLDRY AI + VWI + ++ P
Sbjct: 123 HVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDF 182
Query: 189 LWWRAVRNEEVPKNKCPFTDS---KGYLIFSSTISFYLPLLVMVFTYFKIYRAA 239
++ ++ + + + + LP +V++ Y I
Sbjct: 183 IFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKL 236
Score = 49.1 bits (117), Expect = 3e-06
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 590 EKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVC------TKCFWSEQDEELISAVVTWLGW 643
++KA KT I++ F CWLP+++ + + C + + IS + L +
Sbjct: 408 KRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWIS-ITEALAF 466
Query: 644 INSGMNPVIYACWSRDFRR 662
+ +NP++YA F+
Sbjct: 467 FHCCLNPILYAFLGAKFKT 485
Score = 48.4 bits (115), Expect = 6e-06
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 331 EKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVC------TKCFWSEQDEELISAVVTWLGW 384
++KA KT I++ F CWLP+++ + + C + + IS + L +
Sbjct: 408 KRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWIS-ITEALAF 466
Query: 385 INSGMNPVIYACWSRDFRSK 404
+ +NP++YA F++
Sbjct: 467 FHCCLNPILYAFLGAKFKTS 486
Score = 36.4 bits (84), Expect = 0.028
Identities = 9/77 (11%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 425 PQYLVLISLCYYVTTLVLTAPAILWWRAVRNEEVPKNKCPFTDS---KGYLIFSSTISFY 481
++ + ++ L+LT P ++ ++ + + + +
Sbjct: 160 LLAEKVVYVGVWIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLI 219
Query: 482 LPLLVMVFTYFKIYRAA 498
LP +V++ Y I
Sbjct: 220 LPGIVILSCYCIIISKL 236
Score = 29.5 bits (66), Expect = 3.7
Identities = 4/58 (6%), Positives = 17/58 (29%)
Query: 321 LSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAV 378
+S+ + + + + ++ + + + + EL A+
Sbjct: 233 ISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAI 290
Score = 29.5 bits (66), Expect = 3.7
Identities = 4/58 (6%), Positives = 17/58 (29%)
Query: 580 LSRKLSKFAKEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAV 637
+S+ + + + + ++ + + + + EL A+
Sbjct: 233 ISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAI 290
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein;
NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Length = 32
Score = 66.3 bits (162), Expect = 2e-14
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 137 TASILNLCVISLDRYWAITDPLTYPSRMSTRR 168
T+SI++LC ISLDRYW+IT + Y + + RR
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 6e-07
Identities = 77/516 (14%), Positives = 148/516 (28%), Gaps = 182/516 (35%)
Query: 2 ELLPADFINNV-DFFSNSSNWTYIDI--------------DDDVVTYDFVSNFTLERWLE 46
EL+ F+ V S + + +D+ + + E
Sbjct: 59 ELV-GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI--HALAAKLLQENDTT 115
Query: 47 LAQQRTLLVSTL----------------SLF--------SLVTVF---GNALVMIAVVRE 79
L + + L+ + + +LF LV +F GN E
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD---YFEE 172
Query: 80 -RYLHTSTNYFIMSL--ALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFS 136
R L+ + + + L A+ L L+ A +F + L++L
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA-------EKVFT-------QGLNIL-- 216
Query: 137 TASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAI-----LWW 191
W + +P P + Y+ S IS P I +
Sbjct: 217 --------------EW-LENPSNTPDK-----DYL-------LSIPISCPLIGVIQLAHY 249
Query: 192 RAVRN------EEVPKNKCPFTDSKGYLIFSSTI-------SFYLPLLVMVFTYFKI-YR 237
E+ T L+ + I SF++ + + F I R
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 238 A-----------AVVQTKSLKVGTKQ-----VMSGSTSGEKELTLRI-----HRGGTDHR 276
++++ SL+ +S T ++++ + H
Sbjct: 310 CYEAYPNTSLPPSILE-DSLENNEGVPSPMLSISNLT--QEQVQDYVNKTNSHLPAGKQV 366
Query: 277 HMTLHHTPSDDVEMDN-VMSGH----NGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKE 331
++L + N V+SG G+ + K SR F++
Sbjct: 367 EISLVNGA------KNLVVSGPPQSLYGLNLTL------RKAKAPSGLDQSRI--PFSER 412
Query: 332 KKAAKTLGIVMGVFIVCWL----PFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINS 387
K F +L PF L+ A +++L+ V++
Sbjct: 413 KL----------KFSNRFLPVASPFHSHLLVPAS------DLINKDLVKNNVSFNA---K 453
Query: 388 GMN-PVIYACWS-RDFRSKEKILNHKISPVVFLLPM 421
+ PV Y + D R ++ +I + LP+
Sbjct: 454 DIQIPV-YDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Score = 50.8 bits (121), Expect = 2e-06
Identities = 67/381 (17%), Positives = 106/381 (27%), Gaps = 130/381 (34%)
Query: 13 DFFSNSSN--WTYIDIDDDVVTYDFVSNFTLERWLELAQQR----TLLVSTLSLFSLVTV 66
D S+ I D F + WLE LL +S L+ V
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKV-FTQGLNILEWLENPSNTPDKDYLLSIPIS-CPLIGV 243
Query: 67 FGNALVMIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCD 126
L V + T GLV A D
Sbjct: 244 I--QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE--------------TD 287
Query: 127 SWRS--------LDVLF--------------STASILN-------------LCVISLDRY 151
SW S + VLF SIL L + +L +
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 152 WAITDPLTYPSRMSTRRAYIWIAIV-----WICSGGISFPAILWW--RAVRNEEVP---- 200
+ D + + + I++V + SG P L+ +R + P
Sbjct: 348 -QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG---PPQSLYGLNLTLRKAKAPSGLD 403
Query: 201 KNKCPFTDSKGYLIFSS---TIS--FYLPLL------------------------VMVF- 230
+++ PF++ K L FS+ ++ F+ LL + V+
Sbjct: 404 QSRIPFSERK--LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 231 TY-------------FKIYRAAVVQ----TKSLKVGTKQVMS---GSTSGEKELTLRIHR 270
T+ +I + + + ++ G SG LT R +
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN-K 520
Query: 271 GGTDHRHM---TLHHTPSDDV 288
GT R + TL P DD
Sbjct: 521 DGTGVRVIVAGTLDINPDDDY 541
Score = 49.3 bits (117), Expect = 4e-06
Identities = 103/617 (16%), Positives = 184/617 (29%), Gaps = 194/617 (31%)
Query: 43 RWLELAQ---QRTLLVSTLSLFSLVTVFGNALVMIAVVRERY---LHTSTNYFIMSLALA 96
R L L+ + LLV T + F + + ++E++ L T A
Sbjct: 7 RPLTLSHGSLEHVLLVPT-ASFFIASQ----------LQEQFNKILPEPTE----GFAAD 51
Query: 97 DCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLDVLFSTASILNLCVISLDR-YWAIT 155
D + EL+ F L + S + +LNLC+ + Y
Sbjct: 52 D--------EPTTPAELVGK---F-LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN 99
Query: 156 D------------PLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWRAVRNEEVPKNK 203
D T + YI I+ + L+ RAV
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF-RAVGEGNA---- 154
Query: 204 CPFTDSKGYLIFS--STISFYLPLLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSGSTSGE 261
+ IF Y L ++ + Y V L + + +S
Sbjct: 155 ------QLVAIFGGQGNTDDYFEELRDLY---QTYHVLV---GDLIKFSAETLSELIRTT 202
Query: 262 KELTLRIHRGGTDHRHMTLHH---TPSDDVEMDNVMSGHNGITRQVSNTRIIHKGHIVKN 318
+ ++ G + L + TP D + ++ +S
Sbjct: 203 LDAE-KVFTQGLNILEW-LENPSNTPDKDY-LLSI---------PIS------------- 237
Query: 319 FSLSRKLSKFAKEKKAAKTLGIVMGVF--IVCWLPFFVVNLLSAVCTKCFWSEQD-EELI 375
L + + A AK LG G + L++AV S + +
Sbjct: 238 CPLI-GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 376 SAVVTWLGWI---------NSGMNPVIYA-CWS------------RDFRSKEKILNHKIS 413
+T L +I N+ + P I + ++E++ ++ ++
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL-TQEQVQDY-VN 354
Query: 414 PVVFLLPMCMYPQYLVLISLCYYV---TTLVLTAPAI-LWW--RAVRNEEVP----KNKC 463
LP V ISL V LV++ P L+ +R + P +++
Sbjct: 355 KTNSHLP----AGKQVEISL---VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 464 PFTDSKGYLIFSS---TIS--FYLPLL------------------------VMVF-TY-- 491
PF++ K L FS+ ++ F+ LL + V+ T+
Sbjct: 408 PFSERK--LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 492 -----------FKIYRAAVVQ----TKSLKVGTKQVMS---GSTSGEKELTLRIHRGGTD 533
+I + + + ++ G SG LT R + GT
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN-KDGTG 524
Query: 534 HRHM---TLHHTPSDDV 547
R + TL P DD
Sbjct: 525 VRVIVAGTLDINPDDDY 541
Score = 47.7 bits (113), Expect = 1e-05
Identities = 88/541 (16%), Positives = 167/541 (30%), Gaps = 163/541 (30%)
Query: 205 PFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQ---TKSLKVGTKQVMSGS-TSG 260
P T S G S +P ++F A+ +Q K L T+ + +
Sbjct: 8 PLTLSHG----SLEHVLLVPTA----SFF---IASQLQEQFNKILPEPTEGFAADDEPTT 56
Query: 261 EKELTLR--------IHRGGTDHRHMTLHHTPSDDVEMDNVMSG---HNGITR--QVSNT 307
EL + + L+ + E + + G H + Q ++T
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLC-LTEFE-NCYLEGNDIHALAAKLLQENDT 114
Query: 308 RIIHKGHIVKNFSLSRKLSKFAKEK-------KAAKTLGI-VMGVF------IVCW--L- 350
++ ++KN+ +R ++K +K +A ++ +F + L
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
Query: 351 ------PFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACW--SRDFR 402
V +L+ +E ELI + G+N I W +
Sbjct: 175 DLYQTYHVLVGDLIKFS------AETLSELIRTTLDAEKVFTQGLN--ILE-WLENPSNT 225
Query: 403 SKEKILNHKISPVVFLLPMCMYPQYLVLISLCYYVTTLVLT--APAILWWRAVRNEEVPK 460
+ L P+ P+ + +I L +YV T L P L
Sbjct: 226 PDKDYLLS--IPISC--PL------IGVIQLAHYVVTAKLLGFTPGEL---------RSY 266
Query: 461 NKCPFTDSKGYLIFSSTI-------SFYLPLLVMVFTYFKI-YRA-----------AVVQ 501
K S+G L+ + I SF++ + + F I R ++++
Sbjct: 267 LKGATGHSQG-LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE 325
Query: 502 TKSLKVGTKQ-----VMSGSTSGEKELTLRI-----HRGGTDHRHMTLHHTPSDDVEMDN 551
SL+ +S T ++++ + H ++L + N
Sbjct: 326 -DSLENNEGVPSPMLSISNLT--QEQVQDYVNKTNSHLPAGKQVEISLVNGA------KN 376
Query: 552 -VMSGH----NGITRQVSNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIV 606
V+SG G+ + K SR F++ K F
Sbjct: 377 LVVSGPPQSLYGLNLTL------RKAKAPSGLDQSRI--PFSERKL----------KFSN 418
Query: 607 CWL----PFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMN-PVIYACWS-RDF 660
+L PF L+ A +++L+ V++ + PV Y + D
Sbjct: 419 RFLPVASPFHSHLLVPAS------DLINKDLVKNNVSFNA---KDIQIPV-YDTFDGSDL 468
Query: 661 R 661
R
Sbjct: 469 R 469
Score = 38.1 bits (88), Expect = 0.011
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 32/100 (32%)
Query: 25 DIDDDVVTYDFVS-----NFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALVMIAVVRE 79
+I++ +Y F S + T + Q L+ + F ++
Sbjct: 1709 EINEHSTSYTFRSEKGLLSAT-----QFTQPALTLME-KAAF-------------EDLKS 1749
Query: 80 RYLHTSTNYFI-MSL----ALADCLVGLVVMPFSALYELL 114
+ L + F SL ALA L VM +L E++
Sbjct: 1750 KGLIPADATFAGHSLGEYAALA-SLAD--VMSIESLVEVV 1786
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 2e-04
Identities = 80/580 (13%), Positives = 177/580 (30%), Gaps = 170/580 (29%)
Query: 154 ITDPLTYPSRMSTRRAYIWI------AIVWICSGGISFPAILW-WRAVRNEEVPKNKCPF 206
I + +S W +V + + ++ E + P
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE----QRQPS 106
Query: 207 TDSKGYLIFSSTISFYLPLL--VMVFTYFKIYRAAVVQT-----KSLKVGTKQV---MSG 256
++ Y I L VF + + R L+ + + G
Sbjct: 107 MMTRMY------IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 257 STSGEKELTLRIHRGGTDHRHMTLH---------HTPSDDVEMDNVMSGH---NGITRQV 304
S G+ + L + M ++P +EM + N +R
Sbjct: 161 S--GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 305 SNTRIIHKGHIVKNFSLSRKLSKFAKEKKAAKTLGIVMGVFIV-CWLPF----------- 352
++ I + H ++ +L + K K L +++ V W F
Sbjct: 219 HSSNIKLRIHSIQA-----ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 353 --FVVNLLSAVCTKCFWSEQ------DEELISAVVTWLGWINS-------GMNP-VIYAC 396
V + LSA T + +E+ S ++ +L NP +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 397 WS--RDFRSK----EKILNHKISPVV-----FLLPMCMYPQY--LVLISLCYYVTTLVLT 443
RD + + + K++ ++ L P + L + ++ T++L
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL- 392
Query: 444 APAILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTK 503
+++W+ ++++ ++V+ K+++ ++V+
Sbjct: 393 --SLIWFDVIKSD--------------------------VMVVVN----KLHKYSLVE-- 418
Query: 504 SLKVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQV 563
KQ KE T+ I ++ L ++ + + H I +
Sbjct: 419 ------KQ--------PKESTISIP-----SIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 564 SNTRII----------HKGHIVKNFSLSRKLSKFAK--------EKKAAKTLGIVMGVFI 605
+ +I H GH +KN +++ F E+K +
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK-------IRHDST 512
Query: 606 VCWLPFFVVNLLSAVCT-KCFWSEQD---EELISAVVTWL 641
++N L + K + + D E L++A++ +L
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Score = 41.0 bits (95), Expect = 0.001
Identities = 57/398 (14%), Positives = 128/398 (32%), Gaps = 135/398 (33%)
Query: 41 LERWLELAQ-QRTLLV-------STLSLFS-----LVTVFGNALVMIAVVRERYLHTSTN 87
L R L+ + LLV + F+ L+T V + H S +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT-RFKQVTDFLSAATTTHISLD 292
Query: 88 YFIMSLA-------LADCL---------VGLVVMPFS-ALYELLDHNWIFGLNWCDSWRS 130
+ M+L L L L P ++ + + W D+W+
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL--ATW-DNWKH 349
Query: 131 LDVLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAI----VWICSGGISFP 186
++ +I+ + L+ P+ R+ + +++ I + +S
Sbjct: 350 VN-CDKLTTIIESSLNVLE-----------PAEY--RKMFDRLSVFPPSAHIPTILLS-- 393
Query: 187 AILWWRAVRNEEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRAAVVQTKSL 246
++W+ ++++ ++V+ K+++ ++V+
Sbjct: 394 -LIWFDVIKSD--------------------------VMVVVN----KLHKYSLVE---- 418
Query: 247 KVGTKQVMSGSTSGEKELTLRIHRGGTDHRHMTLHHTPSDDVEMDNVMSGHNGITRQVSN 306
KQ KE T+ I ++ L ++ + + H I + +
Sbjct: 419 ----KQ--------PKESTISIP-----SIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 307 TRII----------HKGHIVKNFSLSRKLSKFAK--------EKKAAKTLGIVMGVFIVC 348
+I H GH +KN +++ F E+K +
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK-------IRHDSTAW 514
Query: 349 WLPFFVVNLLSAVCT-KCFWSEQD---EELISAVVTWL 382
++N L + K + + D E L++A++ +L
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane
protein; NMR {Synthetic}
Length = 33
Score = 30.8 bits (69), Expect = 0.077
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 333 KAAKTLGIVMGVFIVCWLPFFVVNLLSAVCT 363
+ AKTLG+V+ V ++CW P + S T
Sbjct: 3 RLAKTLGLVLAVLLICWFPVLALMAHSLATT 33
Score = 30.8 bits (69), Expect = 0.077
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 592 KAAKTLGIVMGVFIVCWLPFFVVNLLSAVCT 622
+ AKTLG+V+ V ++CW P + S T
Sbjct: 3 RLAKTLGLVLAVLLICWFPVLALMAHSLATT 33
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1,
membrane protein, signaling protein; NMR {Homo sapiens}
Length = 40
Score = 27.8 bits (61), Expect = 1.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 375 ISAVVTWLGWINSGMNPVIYACWSRDFRSK 404
+ A + L +NS +NP+IYA S+D R
Sbjct: 2 VFAFASMLCLLNSTVNPIIYALRSKDLRHA 31
Score = 27.4 bits (60), Expect = 1.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 634 ISAVVTWLGWINSGMNPVIYACWSRDFRR 662
+ A + L +NS +NP+IYA S+D R
Sbjct: 2 VFAFASMLCLLNSTVNPIIYALRSKDLRH 30
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.137 0.437
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,303,120
Number of extensions: 610110
Number of successful extensions: 1669
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1586
Number of HSP's successfully gapped: 80
Length of query: 662
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 562
Effective length of database: 3,909,693
Effective search space: 2197247466
Effective search space used: 2197247466
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.3 bits)