RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5093
         (662 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 84.6 bits (208), Expect = 2e-18
 Identities = 41/232 (17%), Positives = 91/232 (39%), Gaps = 16/232 (6%)

Query: 13  DFFSNSSNWTYIDIDDDVVTYDFVSNFTLERWLELAQQRTLLVSTLSLFSLVTVFGNALV 72
           +F+   SN T +        ++    +  E W     Q ++L + + L  ++    N L 
Sbjct: 8   NFYVPFSNKTGVVRS----PFEAPQYYLAEPW-----QFSMLAAYMFLLIMLGFPINFLT 58

Query: 73  MIAVVRERYLHTSTNYFIMSLALADCLVGLVVMPFSALYELLDHNWIFGLNWCDSWRSLD 132
           +   V+ + L T  NY +++LA+AD  +       +     L   ++FG   C+      
Sbjct: 59  LYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYT-SLHGYFVFGPTGCNLEGFFA 117

Query: 133 VLFSTASILNLCVISLDRYWAITDPLTYPSRMSTRRAYIWIAIVWICSGGISFPAILWWR 192
            L    ++ +L V++++RY  +  P++                  +     + P + W R
Sbjct: 118 TLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSR 177

Query: 193 AVRN------EEVPKNKCPFTDSKGYLIFSSTISFYLPLLVMVFTYFKIYRA 238
            +                  T+++ ++I+   + F +PL+V+ F Y ++   
Sbjct: 178 YIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFT 229



 Score = 56.9 bits (136), Expect = 3e-09
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 589 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 648
            EK+  + + I++  F++CWLP+  V           +      +   +  +    ++  
Sbjct: 246 AEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGP----IFMTIPAFFAKTSAVY 301

Query: 649 NPVIYACWSRDFRR 662
           NPVIY   ++ FR 
Sbjct: 302 NPVIYIMMNKQFRN 315



 Score = 55.7 bits (133), Expect = 8e-09
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 330 KEKKAAKTLGIVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGM 389
            EK+  + + I++  F++CWLP+  V           +      +   +  +    ++  
Sbjct: 246 AEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGP----IFMTIPAFFAKTSAVY 301

Query: 390 NPVIYACWSRDFR 402
           NPVIY   ++ FR
Sbjct: 302 NPVIYIMMNKQFR 314


>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 366

 Score = 27.6 bits (60), Expect = 4.8
 Identities = 21/203 (10%), Positives = 50/203 (24%), Gaps = 14/203 (6%)

Query: 340 IVMGVFIVCWLPFFVVNLLSAVCTKCFWSEQDEELISAVVTWLGWINSGMNPVIYACWSR 399
           ++        + F      + V          +     VVT    +  G    + A    
Sbjct: 156 VINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKKE 215

Query: 400 DFRSKEKILNHKISPVVFLLPMCMYPQYLVLISLCY-YVTTLVLTAPAILWWRAVRNEEV 458
                +KI        +   P  +   Y  L +     +      A      +  +  + 
Sbjct: 216 LV---DKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKE 272

Query: 459 PKNKCPFTDSKGYLIFSSTISFYLP---LLVMVFTYFKIYRAAVVQTKSLKVGTKQVMSG 515
            K           +++  T + ++             K+        K+  +     ++ 
Sbjct: 273 LKAIDDN----INIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGI---ITITV 325

Query: 516 STSGEKELTLRIHRGGTDHRHMT 538
           +       +LRI     D   + 
Sbjct: 326 AGMPGASKSLRIDLTSRDAERID 348


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0460    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,554,486
Number of extensions: 117554
Number of successful extensions: 326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 6
Length of query: 662
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 571
Effective length of database: 1,158,166
Effective search space: 661312786
Effective search space used: 661312786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.0 bits)