BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5094
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UNB|D Chain D, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|R Chain R, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|FF Chain f, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|TT Chain t, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|D Chain D, Mouse Constitutive 20s Proteasome
pdb|3UNE|R Chain R, Mouse Constitutive 20s Proteasome
pdb|3UNE|FF Chain f, Mouse Constitutive 20s Proteasome
pdb|3UNE|TT Chain t, Mouse Constitutive 20s Proteasome
pdb|3UNF|D Chain D, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|R Chain R, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|D Chain D, Mouse 20s Immunoproteasome
pdb|3UNH|R Chain R, Mouse 20s Immunoproteasome
Length = 241
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/229 (76%), Positives = 197/229 (86%), Gaps = 1/229 (0%)
Query: 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLME 60
MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGI TSEGV LA EKRITS LME
Sbjct: 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME 60
Query: 61 PSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLA 120
PSSI+KIVEID HIGCA SGLIAD++ L D+ARVE NHWFTY+E M +ESV QAVSNLA
Sbjct: 61 PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLA 120
Query: 121 IQFGDSD-EESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQS 179
+QFG+ D + AMSRPFGVA+LF G+D KGPQLFH+DPSGT+ Q DA+AIGS SEGAQ S
Sbjct: 121 LQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSS 180
Query: 180 LQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLY 228
LQEVYH+SMTLKEAI L ILKQVMEEKLN+TN+EL TV + +H++
Sbjct: 181 LQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMF 229
>pdb|1IRU|E Chain E, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|S Chain S, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 241
Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/229 (75%), Positives = 196/229 (85%), Gaps = 1/229 (0%)
Query: 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLME 60
MFLTRSEYDRGVNTFSPEGRLFQVEY IEAIKLGSTAIGI TSEGV LA EKRITS LME
Sbjct: 1 MFLTRSEYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME 60
Query: 61 PSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLA 120
PSSI+KIVEID HIGCA SGLIAD++ L D+ARVE NHWFTY+E M +ESV QAVSNLA
Sbjct: 61 PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLA 120
Query: 121 IQFGDSD-EESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQS 179
+QFG+ D + AMSRPFGVA+LF G+D KGPQLFH+DPSGT+ Q DA+AIGS SEGAQ S
Sbjct: 121 LQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSS 180
Query: 180 LQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLY 228
LQE+YH+SMTLKEAI L ILKQVMEEKLN+TN+EL TV + +H++
Sbjct: 181 LQELYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMF 229
>pdb|1VSY|E Chain E, Proteasome Activator Complex
pdb|1VSY|S Chain S, Proteasome Activator Complex
pdb|3L5Q|J Chain J, Proteasome Activator Complex
pdb|3L5Q|V Chain V, Proteasome Activator Complex
pdb|3MG6|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 250
Score = 283 bits (725), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 143/231 (61%), Positives = 176/231 (76%), Gaps = 3/231 (1%)
Query: 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLME 60
MFLTRSEYDRGV+TFSPEGRLFQVEY++EAIKLGSTAIGI+T EGVVL EKR TS L+E
Sbjct: 1 MFLTRSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE 60
Query: 61 PSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLA 120
SI+KIVEID+HIGCA SGL AD+R + + AR H YDE +++ES+ Q+V +LA
Sbjct: 61 SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLA 120
Query: 121 IQFGD--SDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQFDAKAIGSGSEGAQ 177
++FG+ S EE MSRPFGVA+L AG D+ G QLFH +PSGT+ +++AKAIGSGSEGAQ
Sbjct: 121 LRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQ 180
Query: 178 QSLQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLY 228
L +H S+TLKEA VL ILKQVMEEKL+ N +L +T + +Y
Sbjct: 181 AELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIY 231
>pdb|2Z5C|C Chain C, Crystal Structure Of A Novel Chaperone Complex For Yeast
20s Proteasome Assembly
pdb|2Z5C|F Chain F, Crystal Structure Of A Novel Chaperone Complex For Yeast
20s Proteasome Assembly
Length = 262
Score = 283 bits (724), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 143/231 (61%), Positives = 176/231 (76%), Gaps = 3/231 (1%)
Query: 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLME 60
MFLTRSEYDRGV+TFSPEGRLFQVEY++EAIKLGSTAIGI+T EGVVL EKR TS L+E
Sbjct: 3 MFLTRSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE 62
Query: 61 PSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLA 120
SI+KIVEID+HIGCA SGL AD+R + + AR H YDE +++ES+ Q+V +LA
Sbjct: 63 SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLA 122
Query: 121 IQFGD--SDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQFDAKAIGSGSEGAQ 177
++FG+ S EE MSRPFGVA+L AG D+ G QLFH +PSGT+ +++AKAIGSGSEGAQ
Sbjct: 123 LRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQ 182
Query: 178 QSLQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLY 228
L +H S+TLKEA VL ILKQVMEEKL+ N +L +T + +Y
Sbjct: 183 AELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIY 233
>pdb|4G4S|E Chain E, Structure Of Proteasome-Pba1-Pba2 Complex
Length = 261
Score = 283 bits (724), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 143/231 (61%), Positives = 176/231 (76%), Gaps = 3/231 (1%)
Query: 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLME 60
MFLTRSEYDRGV+TFSPEGRLFQVEY++EAIKLGSTAIGI+T EGVVL EKR TS L+E
Sbjct: 2 MFLTRSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE 61
Query: 61 PSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLA 120
SI+KIVEID+HIGCA SGL AD+R + + AR H YDE +++ES+ Q+V +LA
Sbjct: 62 SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLA 121
Query: 121 IQFGD--SDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQFDAKAIGSGSEGAQ 177
++FG+ S EE MSRPFGVA+L AG D+ G QLFH +PSGT+ +++AKAIGSGSEGAQ
Sbjct: 122 LRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQ 181
Query: 178 QSLQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLY 228
L +H S+TLKEA VL ILKQVMEEKL+ N +L +T + +Y
Sbjct: 182 AELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIY 232
>pdb|1FNT|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|D Chain D, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|R Chain R, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|D Chain D, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|R Chain R, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3OEU|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3UN4|D Chain D, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|R Chain R, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|D Chain D, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|R Chain R, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4B4T|E Chain E, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4INR|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 260
Score = 283 bits (724), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 143/231 (61%), Positives = 176/231 (76%), Gaps = 3/231 (1%)
Query: 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLME 60
MFLTRSEYDRGV+TFSPEGRLFQVEY++EAIKLGSTAIGI+T EGVVL EKR TS L+E
Sbjct: 1 MFLTRSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE 60
Query: 61 PSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLA 120
SI+KIVEID+HIGCA SGL AD+R + + AR H YDE +++ES+ Q+V +LA
Sbjct: 61 SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLA 120
Query: 121 IQFGD--SDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQFDAKAIGSGSEGAQ 177
++FG+ S EE MSRPFGVA+L AG D+ G QLFH +PSGT+ +++AKAIGSGSEGAQ
Sbjct: 121 LRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQ 180
Query: 178 QSLQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLY 228
L +H S+TLKEA VL ILKQVMEEKL+ N +L +T + +Y
Sbjct: 181 AELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIY 231
>pdb|1G0U|D Chain D, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|R Chain R, A Gated Channel Into The Proteasome Core Particle
Length = 241
Score = 273 bits (697), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 139/229 (60%), Positives = 170/229 (74%), Gaps = 8/229 (3%)
Query: 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLME 60
MFLTRSEYDRGV+TFSPEGRLFQVEY++EAIKLGSTAIGI+T EGVVL EKR TS L+E
Sbjct: 1 MFLTRSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE 60
Query: 61 PSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLA 120
SI+KIVEID+HIGCA SGL AD+R + + AR H YDE +++ES+ Q+V +LA
Sbjct: 61 SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLA 120
Query: 121 IQFGDSDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQS 179
+AMSRPFGVA+L AG D+ G QLFH +PSGT+ +++AKAIGSGSEGAQ
Sbjct: 121 AA-------AAMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAE 173
Query: 180 LQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLY 228
L +H S+TLKEA VL ILKQVMEEKL+ N +L +T + +Y
Sbjct: 174 LLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIY 222
>pdb|1RYP|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|D Chain D, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|R Chain R, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|D Chain D, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|D Chain D, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|R Chain R, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|D Chain D, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|R Chain R, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|D Chain D, Proteasome Inhibition By Fellutamide B
pdb|3D29|R Chain R, Proteasome Inhibition By Fellutamide B
pdb|3E47|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|D Chain D, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|R Chain R, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|D Chain D, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|R Chain R, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|D Chain D, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|R Chain R, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|D Chain D, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|R Chain R, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|D Chain D, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|R Chain R, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|D Chain D, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|R Chain R, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|D Chain D, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|R Chain R, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|D Chain D, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|R Chain R, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|D Chain D, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|R Chain R, 20s Yeast Proteasome In Complex With Glidobactin
Length = 242
Score = 266 bits (681), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 135/223 (60%), Positives = 168/223 (75%), Gaps = 3/223 (1%)
Query: 9 DRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIV 68
DRGV+TFSPEGRLFQVEY++EAIKLGSTAIGI+T EGVVL EKR TS L+E SI+KIV
Sbjct: 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIV 60
Query: 69 EIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGD--S 126
EID+HIGCA SGL AD+R + + AR H YDE +++ES+ Q+V +LA++FG+ S
Sbjct: 61 EIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGAS 120
Query: 127 DEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYH 185
EE MSRPFGVA+L AG D+ G QLFH +PSGT+ +++AKAIGSGSEGAQ L +H
Sbjct: 121 GEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWH 180
Query: 186 ESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLY 228
S+TLKEA VL ILKQVMEEKL+ N +L +T + +Y
Sbjct: 181 SSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIY 223
>pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|B Chain B, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|C Chain C, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|D Chain D, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|E Chain E, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|F Chain F, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|G Chain G, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|H Chain H, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|I Chain I, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|J Chain J, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|K Chain K, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|L Chain L, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|M Chain M, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|N Chain N, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 264
Score = 187 bits (476), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 140/215 (65%), Gaps = 5/215 (2%)
Query: 6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIK 65
S YDR + FSPEGRL+QVEYA EA++ G+TAIGI+ +GVVLA ++RITS L++ SI+
Sbjct: 10 SAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIE 69
Query: 66 KIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGD 125
KI +ID H+ A SGL+AD+R+L DRAR+E + TY E++ IE +A+ + ++ +
Sbjct: 70 KIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAY-- 127
Query: 126 SDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYH 185
+ RPFGV++L AG+D +LF DPSG ++ A AIGSG + L++ Y
Sbjct: 128 --TQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYR 185
Query: 186 ESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVT 220
+ +TL E + +T L + E+ + NV++C +T
Sbjct: 186 DDITLDEGLELAITALTKANED-IKPENVDVCIIT 219
>pdb|3JRM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 227
Score = 177 bits (448), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 137/221 (61%), Gaps = 4/221 (1%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKI 67
YDR + FSP+GRLFQVEYA EA+K GSTA+G+ + GV+L ++K++ S L+E +SI+KI
Sbjct: 2 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKI 61
Query: 68 VEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSD 127
ID ++ SGL+AD+R+L D AR+ TY ++IE++ + V++ Q+
Sbjct: 62 QLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQY---- 117
Query: 128 EESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHES 187
+ RP+GV+++FAG+D GP+LF DP+GT ++ A AIGSG + L+ Y E+
Sbjct: 118 TQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKEN 177
Query: 188 MTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLY 228
+ KEA+ + LK +EE E+ ++T Y +Y
Sbjct: 178 LPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIY 218
>pdb|2KU1|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 176 bits (447), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 137/221 (61%), Gaps = 4/221 (1%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKI 67
YDR + FSP+GRLFQVEYA EA+K GSTA+G+ + GV+L ++K++ S L+E +SI+KI
Sbjct: 12 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKI 71
Query: 68 VEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSD 127
ID ++ SGL+AD+R+L D AR+ TY ++IE++ + V++ Q+
Sbjct: 72 QLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQY---- 127
Query: 128 EESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHES 187
+ RP+GV+++FAG+D GP+LF DP+GT ++ A AIGSG + L+ Y E+
Sbjct: 128 TQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKEN 187
Query: 188 MTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLY 228
+ KEA+ + LK +EE E+ ++T Y +Y
Sbjct: 188 LPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIY 228
>pdb|1PMA|A Chain A, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|C Chain C, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|D Chain D, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|E Chain E, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|F Chain F, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|G Chain G, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|H Chain H, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|I Chain I, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|J Chain J, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|K Chain K, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|L Chain L, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|M Chain M, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|N Chain N, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|O Chain O, Proteasome From Thermoplasma Acidophilum
pdb|1YA7|A Chain A, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|B Chain B, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|C Chain C, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|D Chain D, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|E Chain E, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|F Chain F, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|G Chain G, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|3C91|A Chain A, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|B Chain B, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|C Chain C, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|D Chain D, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|E Chain E, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|F Chain F, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|G Chain G, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|O Chain O, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|P Chain P, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|R Chain R, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|S Chain S, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|T Chain T, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|U Chain U, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C92|A Chain A, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|B Chain B, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|C Chain C, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|D Chain D, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|E Chain E, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|F Chain F, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|G Chain G, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|O Chain O, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|P Chain P, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|R Chain R, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|S Chain S, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|T Chain T, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|U Chain U, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3IPM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 233
Score = 176 bits (447), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 137/221 (61%), Gaps = 4/221 (1%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKI 67
YDR + FSP+GRLFQVEYA EA+K GSTA+G+ + GV+L ++K++ S L+E +SI+KI
Sbjct: 8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKI 67
Query: 68 VEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSD 127
ID ++ SGL+AD+R+L D AR+ TY ++IE++ + V++ Q+
Sbjct: 68 QLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQY---- 123
Query: 128 EESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHES 187
+ RP+GV+++FAG+D GP+LF DP+GT ++ A AIGSG + L+ Y E+
Sbjct: 124 TQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKEN 183
Query: 188 MTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLY 228
+ KEA+ + LK +EE E+ ++T Y +Y
Sbjct: 184 LPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIY 224
>pdb|1YAR|A Chain A, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|B Chain B, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|C Chain C, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|D Chain D, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|E Chain E, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|F Chain F, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|G Chain G, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
Length = 233
Score = 174 bits (440), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 136/221 (61%), Gaps = 4/221 (1%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKI 67
Y R + FSP+GRLFQVEYA EA+K GSTA+G+ + GV+L ++K++ S L+E +SI+KI
Sbjct: 8 YSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKI 67
Query: 68 VEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSD 127
ID ++ SGL+AD+R+L D AR+ TY ++IE++ + V++ Q+
Sbjct: 68 QLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQY---- 123
Query: 128 EESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHES 187
+ RP+GV+++FAG+D GP+LF DP+GT ++ A AIGSG + L+ Y E+
Sbjct: 124 TQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKEN 183
Query: 188 MTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLY 228
+ KEA+ + LK +EE E+ ++T Y +Y
Sbjct: 184 LPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIY 224
>pdb|1J2P|A Chain A, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|B Chain B, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|C Chain C, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|D Chain D, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|E Chain E, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|F Chain F, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|G Chain G, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
Length = 246
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 137/222 (61%), Gaps = 5/222 (2%)
Query: 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLME 60
M L + YDR + FSP+GRLFQVEYA EA+K G+TAIGI EGV+L A+KR+ S L+E
Sbjct: 1 MHLPQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLE 60
Query: 61 PSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLA 120
+I+KI +ID+HI A SGL+AD+R+L DRAR+E + TYD + ++ +A+ + +
Sbjct: 61 KDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFK 120
Query: 121 IQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSL 180
Q+ + RPFGV++L AG++ P+L+ DPSG ++ A AIG G +
Sbjct: 121 QQY----TQYGGVRPFGVSLLIAGVNEV-PKLYETDPSGALLEYKATAIGMGRMAVTEFF 175
Query: 181 QEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTAD 222
++ Y + ++ +A+ L + +E +L N+E+ V D
Sbjct: 176 EKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVD 217
>pdb|1J2Q|A Chain A, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|B Chain B, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|C Chain C, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|D Chain D, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|E Chain E, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|F Chain F, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|G Chain G, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 237
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 133/213 (62%), Gaps = 5/213 (2%)
Query: 10 RGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVE 69
R + FSP+GRLFQVEYA EA+K G+TAIGI EGV+L A+KR+ S L+E +I+KI +
Sbjct: 1 RAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYK 60
Query: 70 IDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEE 129
ID+HI A SGL+AD+R+L DRAR+E + TYDE + ++ +A+ + + Q+ +
Sbjct: 61 IDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQY----TQ 116
Query: 130 SAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMT 189
RPFGV++L AG+D P+L+ DPSG ++ A AIG G + ++ Y + ++
Sbjct: 117 YGGVRPFGVSLLIAGVDEV-PKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLS 175
Query: 190 LKEAINHVLTILKQVMEEKLNSTNVELCTVTAD 222
+A+ L + +E +L N+E+ V D
Sbjct: 176 FDDAMVLGLVAMGLSIESELVPENIEVGYVKVD 208
>pdb|1YAU|A Chain A, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|B Chain B, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|C Chain C, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|D Chain D, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|E Chain E, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|F Chain F, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|G Chain G, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
Length = 233
Score = 171 bits (434), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 135/219 (61%), Gaps = 4/219 (1%)
Query: 10 RGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVE 69
R + FSP+GRLFQVEYA EA+K GSTA+G+ + GV+L ++K++ S L+E +SI+KI
Sbjct: 10 RAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQL 69
Query: 70 IDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEE 129
ID ++ SGL+AD+R+L D AR+ TY ++IE++ + V++ Q+ +
Sbjct: 70 IDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQY----TQ 125
Query: 130 SAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMT 189
RP+GV+++FAG+D GP+LF DP+GT ++ A AIGSG + L+ Y E++
Sbjct: 126 YGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLP 185
Query: 190 LKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLY 228
KEA+ + LK +EE E+ ++T Y +Y
Sbjct: 186 EKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIY 224
>pdb|2KU2|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 171 bits (433), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 135/219 (61%), Gaps = 4/219 (1%)
Query: 10 RGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVE 69
R + FSP+GRLFQVEYA EA+K GSTA+G+ + GV+L ++K++ S L+E +SI+KI
Sbjct: 14 RAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQL 73
Query: 70 IDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEE 129
ID ++ SGL+AD+R+L D AR+ TY ++IE++ + V++ Q+ +
Sbjct: 74 IDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQY----TQ 129
Query: 130 SAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMT 189
RP+GV+++FAG+D GP+LF DP+GT ++ A AIGSG + L+ Y E++
Sbjct: 130 YGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLP 189
Query: 190 LKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLY 228
KEA+ + LK +EE E+ ++T Y +Y
Sbjct: 190 EKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIY 228
>pdb|3UNE|C Chain C, Mouse Constitutive 20s Proteasome
pdb|3UNE|Q Chain Q, Mouse Constitutive 20s Proteasome
pdb|3UNE|EE Chain e, Mouse Constitutive 20s Proteasome
pdb|3UNE|SS Chain s, Mouse Constitutive 20s Proteasome
pdb|3UNF|C Chain C, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Q Chain Q, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|C Chain C, Mouse 20s Immunoproteasome
pdb|3UNH|Q Chain Q, Mouse 20s Immunoproteasome
Length = 248
Score = 154 bits (389), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 133/223 (59%), Gaps = 17/223 (7%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKI 67
YDR + FSP+G LFQVEYA EA+K GSTA+G+ + VVL EK+ + L + +++KI
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKI 62
Query: 68 VEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSD 127
+D ++ A +GL AD+RI+ +RARVEC +H T ++ + +E + + +++L ++ S+
Sbjct: 63 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
Query: 128 EESAMSRPFGVAMLFAGLDSKG-PQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVY-- 184
RPFG++ L G D G P+L+ DPSGTY + A AIG G++ ++ L++ Y
Sbjct: 123 GR----RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTD 178
Query: 185 ----HESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADK 223
+ +T+K I +L +++ N+EL + D+
Sbjct: 179 DAIETDDLTIKLVIKALLEVVQS------GGKNIELAVMRRDQ 215
>pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|R Chain R, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 248
Score = 154 bits (389), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 133/223 (59%), Gaps = 17/223 (7%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKI 67
YDR + FSP+G LFQVEYA EA+K GSTA+G+ + VVL EK+ + L + +++KI
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKI 62
Query: 68 VEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSD 127
+D ++ A +GL AD+RI+ +RARVEC +H T ++ + +E + + +++L ++ S+
Sbjct: 63 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
Query: 128 EESAMSRPFGVAMLFAGLDSKG-PQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVY-- 184
RPFG++ L G D G P+L+ DPSGTY + A AIG G++ ++ L++ Y
Sbjct: 123 GR----RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTD 178
Query: 185 ----HESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADK 223
+ +T+K I +L +++ N+EL + D+
Sbjct: 179 EAIETDDLTIKLVIKALLEVVQS------GGKNIELAVMRRDQ 215
>pdb|3UNB|C Chain C, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Q Chain Q, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|EE Chain e, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|SS Chain s, Mouse Constitutive 20s Proteasome In Complex With Pr-957
Length = 248
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 132/223 (59%), Gaps = 17/223 (7%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKI 67
YDR + FSP+G LFQVEYA EA+K GSTA+G+ + VVL K+ + L + +++KI
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVAKKSVAKLQDERTVRKI 62
Query: 68 VEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSD 127
+D ++ A +GL AD+RI+ +RARVEC +H T ++ + +E + + +++L ++ S+
Sbjct: 63 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
Query: 128 EESAMSRPFGVAMLFAGLDSKG-PQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVY-- 184
RPFG++ L G D G P+L+ DPSGTY + A AIG G++ ++ L++ Y
Sbjct: 123 GR----RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTD 178
Query: 185 ----HESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADK 223
+ +T+K I +L +++ N+EL + D+
Sbjct: 179 DAIETDDLTIKLVIKALLEVVQS------GGKNIELAVMRRDQ 215
>pdb|1Z7Q|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|B Chain B, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|P Chain P, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|B Chain B, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|P Chain P, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|C Chain C, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|C Chain C, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 258
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 129/216 (59%), Gaps = 7/216 (3%)
Query: 7 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEP-SSIK 65
YD FSPEGRL+QVEYA+E+I TAIGI S+G+VLAAE+++TS L+E +S +
Sbjct: 5 RYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTE 64
Query: 66 KIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGD 125
K+ +++ I A +GL AD+ IL + AR+ N+ TY+E + +E + + +S++ +
Sbjct: 65 KLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGY-- 122
Query: 126 SDEESAMSRPFGVAMLFAGLDSK-GPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVY 184
+ RPFGV+ ++AG D + G QL+ +PSG YT + A ++G+ + AQ LQ Y
Sbjct: 123 --TQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDY 180
Query: 185 HESMTLKEAINHVLTILKQVMEEK-LNSTNVELCTV 219
+ M + +AI L L + + L +E T+
Sbjct: 181 KDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATI 216
>pdb|1G0U|B Chain B, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|P Chain P, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3MG6|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 245
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 129/216 (59%), Gaps = 7/216 (3%)
Query: 7 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEP-SSIK 65
YD FSPEGRL+QVEYA+E+I TAIGI S+G+VLAAE+++TS L+E +S +
Sbjct: 5 RYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTE 64
Query: 66 KIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGD 125
K+ +++ I A +GL AD+ IL + AR+ N+ TY+E + +E + + +S++ +
Sbjct: 65 KLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGY-- 122
Query: 126 SDEESAMSRPFGVAMLFAGLDSK-GPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVY 184
+ RPFGV+ ++AG D + G QL+ +PSG YT + A ++G+ + AQ LQ Y
Sbjct: 123 --TQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDY 180
Query: 185 HESMTLKEAINHVLTILKQVMEEK-LNSTNVELCTV 219
+ M + +AI L L + + L +E T+
Sbjct: 181 KDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATI 216
>pdb|1RYP|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|B Chain B, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|P Chain P, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|B Chain B, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|W Chain W, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|B Chain B, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|P Chain P, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|B Chain B, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|P Chain P, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|B Chain B, Proteasome Inhibition By Fellutamide B
pdb|3D29|P Chain P, Proteasome Inhibition By Fellutamide B
pdb|3E47|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|B Chain B, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|P Chain P, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|B Chain B, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|P Chain P, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|B Chain B, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|P Chain P, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|B Chain B, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|P Chain P, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|B Chain B, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|P Chain P, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|B Chain B, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|P Chain P, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|B Chain B, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|P Chain P, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|B Chain B, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|P Chain P, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|B Chain B, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|P Chain P, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 129/216 (59%), Gaps = 7/216 (3%)
Query: 7 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEP-SSIK 65
YD FSPEGRL+QVEYA+E+I TAIGI S+G+VLAAE+++TS L+E +S +
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTE 63
Query: 66 KIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGD 125
K+ +++ I A +GL AD+ IL + AR+ N+ TY+E + +E + + +S++ +
Sbjct: 64 KLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGY-- 121
Query: 126 SDEESAMSRPFGVAMLFAGLDSK-GPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVY 184
+ RPFGV+ ++AG D + G QL+ +PSG YT + A ++G+ + AQ LQ Y
Sbjct: 122 --TQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDY 179
Query: 185 HESMTLKEAINHVLTILKQVMEEK-LNSTNVELCTV 219
+ M + +AI L L + + L +E T+
Sbjct: 180 KDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATI 215
>pdb|3OEU|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 235
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 127/208 (61%), Gaps = 7/208 (3%)
Query: 15 FSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEP-SSIKKIVEIDKH 73
FSPEGRL+QVEYA+E+I TAIGI S+G+VLAAE+++TS L+E +S +K+ +++
Sbjct: 3 FSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDK 62
Query: 74 IGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMS 133
I A +GL AD+ IL + AR+ N+ TY+E + +E + + +S++ + +
Sbjct: 63 IAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGY----TQHGGL 118
Query: 134 RPFGVAMLFAGLDSK-GPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKE 192
RPFGV+ ++AG D + G QL+ +PSG YT + A ++G+ + AQ LQ Y + M + +
Sbjct: 119 RPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDD 178
Query: 193 AINHVLTILKQVMEEK-LNSTNVELCTV 219
AI L L + + L +E T+
Sbjct: 179 AIELALKTLSKTTDSSALTYDRLEFATI 206
>pdb|3OEU|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 242
Score = 143 bits (360), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 10/227 (4%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKI 67
YD + FSP+GR FQVEYA++A++ G+T+IGI ++GVV A EK ITS L+ P KI
Sbjct: 2 YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKI 61
Query: 68 VEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSD 127
+D+HIGC SGLI D R L +R R E A+ Y + I + A + Q+ +
Sbjct: 62 QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLG----QYVQAH 117
Query: 128 EESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEV---Y 184
RPFGV+ +F G+D G L+ L+PSG+Y + A G G + A+ L+++ +
Sbjct: 118 TLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHH 177
Query: 185 HESMTLKEAINHVLTILKQVME---EKLNSTNVELCTVTADKMYHLY 228
E ++ +EA+ I+ E EK + C+++ H +
Sbjct: 178 PEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKF 224
>pdb|1RYP|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|F Chain F, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|T Chain T, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|F Chain F, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|F Chain F, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|T Chain T, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|F Chain F, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|T Chain T, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|F Chain F, Proteasome Inhibition By Fellutamide B
pdb|3D29|T Chain T, Proteasome Inhibition By Fellutamide B
pdb|3E47|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|F Chain F, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|T Chain T, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|G Chain G, Proteasome Activator Complex
pdb|1VSY|U Chain U, Proteasome Activator Complex
pdb|3L5Q|L Chain L, Proteasome Activator Complex
pdb|3L5Q|X Chain X, Proteasome Activator Complex
pdb|3MG4|F Chain F, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|T Chain T, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|F Chain F, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|T Chain T, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|F Chain F, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|T Chain T, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|F Chain F, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|T Chain T, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|F Chain F, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|T Chain T, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|F Chain F, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|T Chain T, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|F Chain F, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|T Chain T, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|F Chain F, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|T Chain T, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 10/227 (4%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKI 67
YD + FSP+GR FQVEYA++A++ G+T+IGI ++GVV A EK ITS L+ P KI
Sbjct: 4 YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKI 63
Query: 68 VEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSD 127
+D+HIGC SGLI D R L +R R E A+ Y + I + A + Q+ +
Sbjct: 64 QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLG----QYVQAH 119
Query: 128 EESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEV---Y 184
RPFGV+ +F G+D G L+ L+PSG+Y + A G G + A+ L+++ +
Sbjct: 120 TLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHH 179
Query: 185 HESMTLKEAINHVLTILKQVME---EKLNSTNVELCTVTADKMYHLY 228
E ++ +EA+ I+ E EK + C+++ H +
Sbjct: 180 PEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKF 226
>pdb|1G0U|F Chain F, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|T Chain T, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 248
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 10/227 (4%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKI 67
YD + FSP+GR FQVEYA++A++ G+T+IGI ++GVV A EK ITS L+ P KI
Sbjct: 8 YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKI 67
Query: 68 VEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSD 127
+D+HIGC SGLI D R L +R R E A+ Y + I + A + Q+ +
Sbjct: 68 QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLG----QYVQAH 123
Query: 128 EESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEV---Y 184
RPFGV+ +F G+D G L+ L+PSG+Y + A G G + A+ L+++ +
Sbjct: 124 TLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHH 183
Query: 185 HESMTLKEAINHVLTILKQVME---EKLNSTNVELCTVTADKMYHLY 228
E ++ +EA+ I+ E EK + C+++ H +
Sbjct: 184 PEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKF 230
>pdb|3UNB|A Chain A, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|O Chain O, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|CC Chain c, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|QQ Chain q, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|A Chain A, Mouse Constitutive 20s Proteasome
pdb|3UNE|O Chain O, Mouse Constitutive 20s Proteasome
pdb|3UNE|CC Chain c, Mouse Constitutive 20s Proteasome
pdb|3UNE|QQ Chain q, Mouse Constitutive 20s Proteasome
pdb|3UNF|A Chain A, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|O Chain O, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|A Chain A, Mouse 20s Immunoproteasome
pdb|3UNH|O Chain O, Mouse 20s Immunoproteasome
Length = 234
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 120/214 (56%), Gaps = 4/214 (1%)
Query: 3 LTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPS 62
+ + Y + TFSP G+L Q+EYA+ A+ G+ ++GI + GVVLA EK+ S+L +
Sbjct: 1 MAKRGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDER 60
Query: 63 SIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQ 122
S+ K+ I KHIG SG+ D R+L RAR ++ Y E + + Q V+++ +
Sbjct: 61 SVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQE 120
Query: 123 FGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQE 182
+ +S RPFGV++L G + P LF DPSG Y + A A+G + L++
Sbjct: 121 Y----TQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEK 176
Query: 183 VYHESMTLKEAINHVLTILKQVMEEKLNSTNVEL 216
Y+E + L++AI+ + LK+ E ++ N+E+
Sbjct: 177 RYNEDLELEDAIHTAILTLKESFEGQMTEDNIEV 210
>pdb|1Z7Q|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3NZJ|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|G Chain G, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|G Chain G, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 288
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 10/227 (4%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKI 67
YD + FSP+GR FQVEYA++A++ G+T+IGI ++GVV A EK ITS L+ P KI
Sbjct: 8 YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKI 67
Query: 68 VEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSD 127
+D+HIGC SGLI D R L +R R E A+ Y + I + A + Q+ +
Sbjct: 68 QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLG----QYVQAH 123
Query: 128 EESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEV---Y 184
RPFGV+ +F G+D G L+ L+PSG+Y + A G G + A+ L+++ +
Sbjct: 124 TLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHH 183
Query: 185 HESMTLKEAINHVLTILKQVME---EKLNSTNVELCTVTADKMYHLY 228
E ++ +EA+ I+ E EK + C+++ H +
Sbjct: 184 PEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKF 230
>pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|F Chain F, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|T Chain T, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|F Chain F, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|T Chain T, Yeast 20s Proteasome:glidobactin A-Complex
Length = 287
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 10/227 (4%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKI 67
YD + FSP+GR FQVEYA++A++ G+T+IGI ++GVV A EK ITS L+ P KI
Sbjct: 7 YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKI 66
Query: 68 VEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSD 127
+D+HIGC SGLI D R L +R R E A+ Y + I + A + Q+ +
Sbjct: 67 QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLG----QYVQAH 122
Query: 128 EESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEV---Y 184
RPFGV+ +F G+D G L+ L+PSG+Y + A G G + A+ L+++ +
Sbjct: 123 TLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHH 182
Query: 185 HESMTLKEAINHVLTILKQVME---EKLNSTNVELCTVTADKMYHLY 228
E ++ +EA+ I+ E EK + C+++ H +
Sbjct: 183 PEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKF 229
>pdb|1VSY|C Chain C, Proteasome Activator Complex
pdb|1VSY|Q Chain Q, Proteasome Activator Complex
pdb|3L5Q|H Chain H, Proteasome Activator Complex
pdb|3L5Q|T Chain T, Proteasome Activator Complex
Length = 232
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 126/207 (60%), Gaps = 7/207 (3%)
Query: 16 SPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEP-SSIKKIVEIDKHI 74
SPEGRL+QVEYA+E+I TAIGI S+G+VLAAE+++TS L+E +S +K+ +++ I
Sbjct: 1 SPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKI 60
Query: 75 GCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSR 134
A +GL AD+ IL + AR+ N+ TY+E + +E + + +S++ + + R
Sbjct: 61 AVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGY----TQHGGLR 116
Query: 135 PFGVAMLFAGLDSK-GPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEA 193
PFGV+ ++AG D + G QL+ +PSG YT + A ++G+ + AQ LQ Y + M + +A
Sbjct: 117 PFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDA 176
Query: 194 INHVLTILKQVMEEK-LNSTNVELCTV 219
I L L + + L +E T+
Sbjct: 177 IELALKTLSKTTDSSALTYDRLEFATI 203
>pdb|1IRU|B Chain B, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|P Chain P, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 233
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 118/209 (56%), Gaps = 4/209 (1%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKI 67
Y + TFSP G+L Q+EYA+ A+ G+ ++GI + GVVLA EK+ S+L + S+ K+
Sbjct: 5 YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKV 64
Query: 68 VEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSD 127
I KHIG SG+ D R+L RAR ++ Y E + + Q V+++ ++
Sbjct: 65 EPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEY---- 120
Query: 128 EESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHES 187
+S RPFGV++L G + P LF DPSG Y + A A+G + L++ Y+E
Sbjct: 121 TQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNED 180
Query: 188 MTLKEAINHVLTILKQVMEEKLNSTNVEL 216
+ L++AI+ + LK+ E ++ N+E+
Sbjct: 181 LELEDAIHTAILTLKESFEGQMTEDNIEV 209
>pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|C Chain C, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Q Chain Q, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|C Chain C, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Q Chain Q, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|C Chain C, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Q Chain Q, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|C Chain C, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Q Chain Q, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|D Chain D, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|D Chain D, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 254
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 131/226 (57%), Gaps = 18/226 (7%)
Query: 6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLME----P 61
S YDR ++ FSP+G +FQVEYA+EA+K G+ A+G+ VVL E+R T L + P
Sbjct: 2 SGYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITP 61
Query: 62 SSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAI 121
S + K ID H+ + SGL ADSRIL ++ARVE +H T ++ + +E + + V+ +
Sbjct: 62 SKVSK---IDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQ 118
Query: 122 QFGDSDEESAMSRPFGVAMLFAGLDSKG--PQLFHLDPSGTYTQFDAKAIGSGSEGAQQS 179
++ +S RPFGV+ L AG D + P+L+ +PSG Y+ + A+ IG S+ ++
Sbjct: 119 RY----TQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREF 174
Query: 180 LQEVYHES---MTLKEAINHVLTILKQVMEEKLNSTNVELCTVTAD 222
L++ Y T++E + + L +V++ + N+E+ V D
Sbjct: 175 LEKNYDRKEPPATVEECVKLTVRSLLEVVQ--TGAKNIEITVVKPD 218
>pdb|1G0U|C Chain C, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Q Chain Q, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 243
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 131/226 (57%), Gaps = 18/226 (7%)
Query: 6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLME----P 61
S YDR ++ FSP+G +FQVEYA+EA+K G+ A+G+ VVL E+R T L + P
Sbjct: 2 SGYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITP 61
Query: 62 SSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAI 121
S + K ID H+ + SGL ADSRIL ++ARVE +H T ++ + +E + + V+ +
Sbjct: 62 SKVSK---IDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQ 118
Query: 122 QFGDSDEESAMSRPFGVAMLFAGLDSKG--PQLFHLDPSGTYTQFDAKAIGSGSEGAQQS 179
++ +S RPFGV+ L AG D + P+L+ +PSG Y+ + A+ IG S+ ++
Sbjct: 119 RY----TQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREF 174
Query: 180 LQEVYHES---MTLKEAINHVLTILKQVMEEKLNSTNVELCTVTAD 222
L++ Y T++E + + L +V++ + N+E+ V D
Sbjct: 175 LEKNYDRKEPPATVEECVKLTVRSLLEVVQ--TGAKNIEITVVKPD 218
>pdb|1RYP|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|C Chain C, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Q Chain Q, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|C Chain C, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|X Chain X, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|C Chain C, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Q Chain Q, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|C Chain C, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Q Chain Q, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|C Chain C, Proteasome Inhibition By Fellutamide B
pdb|3D29|Q Chain Q, Proteasome Inhibition By Fellutamide B
pdb|3E47|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|C Chain C, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Q Chain Q, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|C Chain C, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Q Chain Q, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|C Chain C, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Q Chain Q, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|C Chain C, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Q Chain Q, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|C Chain C, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Q Chain Q, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|C Chain C, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Q Chain Q, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|C Chain C, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Q Chain Q, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|C Chain C, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Q Chain Q, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|C Chain C, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Q Chain Q, 20s Yeast Proteasome In Complex With Glidobactin
Length = 241
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 130/224 (58%), Gaps = 18/224 (8%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLME----PSS 63
YDR ++ FSP+G +FQVEYA+EA+K G+ A+G+ VVL E+R T L + PS
Sbjct: 2 YDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSK 61
Query: 64 IKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQF 123
+ K ID H+ + SGL ADSRIL ++ARVE +H T ++ + +E + + V+ + ++
Sbjct: 62 VSK---IDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRY 118
Query: 124 GDSDEESAMSRPFGVAMLFAGLDSKG--PQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQ 181
+S RPFGV+ L AG D + P+L+ +PSG Y+ + A+ IG S+ ++ L+
Sbjct: 119 ----TQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLE 174
Query: 182 EVYHES---MTLKEAINHVLTILKQVMEEKLNSTNVELCTVTAD 222
+ Y T++E + + L +V++ + N+E+ V D
Sbjct: 175 KNYDRKEPPATVEECVKLTVRSLLEVVQ--TGAKNIEITVVKPD 216
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 261
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 128/222 (57%), Gaps = 14/222 (6%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKR-ITSVLMEPSSIKK 66
YD FSPEGRL+QVEYA+EAI T +GI ++GV+LAAE+R I +L E +K
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 64
Query: 67 IVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLA---IQF 123
I ++++ + C+ +G+ +D+ +LT+ R+ + Y E + E + A+ ++ QF
Sbjct: 65 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 124
Query: 124 GDSDEESAMSRPFGVAMLFAGLDSK-GPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQE 182
G RPFGV++L+ G D G QL+ DPSG Y + A IG+ S A L++
Sbjct: 125 GG-------KRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQ 177
Query: 183 VYHES-MTLKEAINHVLTILKQVME-EKLNSTNVELCTVTAD 222
Y E MTLK A+ + +L + M+ KL++ VE+ T+T +
Sbjct: 178 DYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRE 219
>pdb|3UNB|B Chain B, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|P Chain P, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|DD Chain d, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|RR Chain r, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|B Chain B, Mouse Constitutive 20s Proteasome
pdb|3UNE|P Chain P, Mouse Constitutive 20s Proteasome
pdb|3UNE|DD Chain d, Mouse Constitutive 20s Proteasome
pdb|3UNE|RR Chain r, Mouse Constitutive 20s Proteasome
pdb|3UNF|B Chain B, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|P Chain P, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|B Chain B, Mouse 20s Immunoproteasome
pdb|3UNH|P Chain P, Mouse 20s Immunoproteasome
Length = 261
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 128/222 (57%), Gaps = 14/222 (6%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKR-ITSVLMEPSSIKK 66
YD FSPEGRL+QVEYA+EAI T +GI ++GV+LAAE+R I +L E +K
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 64
Query: 67 IVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLA---IQF 123
I ++++ + C+ +G+ +D+ +LT+ R+ + Y E + E + A+ ++ QF
Sbjct: 65 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 124
Query: 124 GDSDEESAMSRPFGVAMLFAGLDSK-GPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQE 182
G RPFGV++L+ G D G QL+ DPSG Y + A IG+ S A L++
Sbjct: 125 GG-------KRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQ 177
Query: 183 VYHES-MTLKEAINHVLTILKQVME-EKLNSTNVELCTVTAD 222
Y E MTLK A+ + +L + M+ KL++ VE+ T+T +
Sbjct: 178 DYKEGEMTLKSALALAVKVLNKTMDVSKLSAEKVEIATLTRE 219
>pdb|1IRU|F Chain F, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|T Chain T, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 263
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 123/233 (52%), Gaps = 16/233 (6%)
Query: 3 LTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPS 62
+ R++YD V +SP+GR+ Q+EYA+EA+K GS +G+ + VL A KR S L +
Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELA--A 58
Query: 63 SIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQ 122
KKI+ +D HIG + +GL AD+R+L + R EC + F +D + VS L
Sbjct: 59 HQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPL-------PVSRLVSL 111
Query: 123 FGDSDE---ESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQS 179
G + + RP+GV +L AG D GP +F PS Y A +IG+ S+ A+
Sbjct: 112 IGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTY 171
Query: 180 LQEVYHESM--TLKEAINHVLTILKQVM--EEKLNSTNVELCTVTADKMYHLY 228
L+ E M L E + H L L++ + E+ L + NV + V D + +Y
Sbjct: 172 LERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIY 224
>pdb|3UNB|E Chain E, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|S Chain S, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|GG Chain g, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|UU Chain u, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|E Chain E, Mouse Constitutive 20s Proteasome
pdb|3UNE|S Chain S, Mouse Constitutive 20s Proteasome
pdb|3UNE|GG Chain g, Mouse Constitutive 20s Proteasome
pdb|3UNE|UU Chain u, Mouse Constitutive 20s Proteasome
pdb|3UNF|E Chain E, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|S Chain S, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|E Chain E, Mouse 20s Immunoproteasome
pdb|3UNH|S Chain S, Mouse 20s Immunoproteasome
Length = 263
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 123/233 (52%), Gaps = 16/233 (6%)
Query: 3 LTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPS 62
+ R++YD V +SP+GR+ Q+EYA+EA+K GS +G+ + VL A KR S L +
Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELA--A 58
Query: 63 SIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQ 122
KKI+ +D HIG + +GL AD+R+L + R EC + F +D + VS L
Sbjct: 59 HQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPL-------PVSRLVSL 111
Query: 123 FGDSDE---ESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQS 179
G + + RP+GV +L AG D GP +F PS Y A +IG+ S+ A+
Sbjct: 112 IGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTY 171
Query: 180 LQEVYHESM--TLKEAINHVLTILKQVM--EEKLNSTNVELCTVTADKMYHLY 228
L+ E M L E + H L L++ + E+ L + NV + V D + +Y
Sbjct: 172 LERHMSEFMECNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIY 224
>pdb|1G0U|E Chain E, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|S Chain S, A Gated Channel Into The Proteasome Core Particle
Length = 234
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 121/233 (51%), Gaps = 13/233 (5%)
Query: 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLME 60
MF R+ YD TFSP GRLFQVEYA+EAIK GS +G+ ++ VL A KR L
Sbjct: 1 MF--RNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL-- 56
Query: 61 PSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLA 120
S KKI++ D+H+G + +GL D+R+L++ R +C ++ K+ +E + + A
Sbjct: 57 SSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKA 116
Query: 121 IQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSL 180
+ +SA RP+GV +L G D G L PSG T+ AIG+ S+GA+ L
Sbjct: 117 ----QKNTQSAGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYL 172
Query: 181 QEVYHESMTLKEAINHVL-----TILKQVMEEKLNSTNVELCTVTADKMYHLY 228
+ + + + ++ I + + +E L N+ + V D + +Y
Sbjct: 173 ERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIY 225
>pdb|3SDI|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
Length = 233
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 119/229 (51%), Gaps = 11/229 (4%)
Query: 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSI 64
R+ YD TFSP GRLFQVEYA+EAIK GS +G+ ++ VL A KR L S
Sbjct: 2 RNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL--SSYQ 59
Query: 65 KKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFG 124
KKI++ D+H+G + +GL D+R+L++ R +C ++ K+ +E + + A
Sbjct: 60 KKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKA---- 115
Query: 125 DSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVY 184
+ +SA RP+GV +L G D G L PSG T+ AIG+ S+GA+ L+
Sbjct: 116 QKNTQSAGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTL 175
Query: 185 HESMTLKEAINHVL-----TILKQVMEEKLNSTNVELCTVTADKMYHLY 228
+ + + ++ I + + +E L N+ + V D + +Y
Sbjct: 176 DTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIY 224
>pdb|1FNT|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|E Chain E, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|S Chain S, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|E Chain E, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|S Chain S, Yeast 20s Proteasome:glidobactin A-Complex
pdb|1VSY|F Chain F, Proteasome Activator Complex
pdb|1VSY|T Chain T, Proteasome Activator Complex
pdb|3L5Q|K Chain K, Proteasome Activator Complex
pdb|3L5Q|W Chain W, Proteasome Activator Complex
pdb|3NZJ|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3UN4|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|F Chain F, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4INR|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 234
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 120/233 (51%), Gaps = 13/233 (5%)
Query: 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLME 60
MF R+ YD TFSP GRLFQVEYA+EAIK GS +G+ ++ VL A KR L
Sbjct: 1 MF--RNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL-- 56
Query: 61 PSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLA 120
S KKI++ D+H+G + +GL D+R+L++ R +C ++ K+ +E + + A
Sbjct: 57 SSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKA 116
Query: 121 IQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSL 180
+ +S RP+GV +L G D G L PSG T+ AIG+ S+GA+ L
Sbjct: 117 ----QKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYL 172
Query: 181 QEVYHESMTLKEAINHVL-----TILKQVMEEKLNSTNVELCTVTADKMYHLY 228
+ + + + ++ I + + +E L N+ + V D + +Y
Sbjct: 173 ERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIY 225
>pdb|4G4S|F Chain F, Structure Of Proteasome-Pba1-Pba2 Complex
Length = 235
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 120/233 (51%), Gaps = 13/233 (5%)
Query: 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLME 60
MF R+ YD TFSP GRLFQVEYA+EAIK GS +G+ ++ VL A KR L
Sbjct: 2 MF--RNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL-- 57
Query: 61 PSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLA 120
S KKI++ D+H+G + +GL D+R+L++ R +C ++ K+ +E + + A
Sbjct: 58 SSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKA 117
Query: 121 IQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSL 180
+ +S RP+GV +L G D G L PSG T+ AIG+ S+GA+ L
Sbjct: 118 ----QKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYL 173
Query: 181 QEVYHESMTLKEAINHVL-----TILKQVMEEKLNSTNVELCTVTADKMYHLY 228
+ + + + ++ I + + +E L N+ + V D + +Y
Sbjct: 174 ERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIY 226
>pdb|1RYP|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|E Chain E, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|S Chain S, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|E Chain E, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|E Chain E, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|S Chain S, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|E Chain E, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|S Chain S, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|E Chain E, Proteasome Inhibition By Fellutamide B
pdb|3D29|S Chain S, Proteasome Inhibition By Fellutamide B
pdb|3E47|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|E Chain E, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|S Chain S, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|E Chain E, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|S Chain S, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|E Chain E, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|S Chain S, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|E Chain E, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|S Chain S, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|E Chain E, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|S Chain S, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|E Chain E, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|S Chain S, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDK|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|E Chain E, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|S Chain S, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|E Chain E, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|S Chain S, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|E Chain E, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|S Chain S, 20s Yeast Proteasome In Complex With Glidobactin
Length = 233
Score = 126 bits (317), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 11/229 (4%)
Query: 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSI 64
R+ YD TFSP GRLFQVEYA+EAIK GS +G+ ++ VL A KR L S
Sbjct: 2 RNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL--SSYQ 59
Query: 65 KKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFG 124
KKI++ D+H+G + +GL D+R+L++ R +C ++ K+ +E + + A
Sbjct: 60 KKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKA---- 115
Query: 125 DSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVY 184
+ +S RP+GV +L G D G L PSG T+ AIG+ S+GA+ L+
Sbjct: 116 QKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTL 175
Query: 185 HESMTLKEAINHVL-----TILKQVMEEKLNSTNVELCTVTADKMYHLY 228
+ + + ++ I + + +E L N+ + V D + +Y
Sbjct: 176 DTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIY 224
>pdb|3UNB|F Chain F, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|T Chain T, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|HH Chain h, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|VV Chain v, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|F Chain F, Mouse Constitutive 20s Proteasome
pdb|3UNE|T Chain T, Mouse Constitutive 20s Proteasome
pdb|3UNE|HH Chain h, Mouse Constitutive 20s Proteasome
pdb|3UNE|VV Chain v, Mouse Constitutive 20s Proteasome
pdb|3UNF|F Chain F, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|T Chain T, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|F Chain F, Mouse 20s Immunoproteasome
pdb|3UNH|T Chain T, Mouse 20s Immunoproteasome
Length = 255
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 113/201 (56%), Gaps = 5/201 (2%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKI 67
YD +TFSP+GR+FQVEYA++A++ STAIGI +GVV EK + S L E S K++
Sbjct: 8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRL 67
Query: 68 VEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSD 127
+D+H+G A +GL+AD+R L D AR E +N + + ++ +A V+ +
Sbjct: 68 FNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAY---- 123
Query: 128 EESAMSRPFGVAMLFAGLDSK-GPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHE 186
+ RPFG + + + G QL+ +DPSG + AIG + A+ ++++ +
Sbjct: 124 TLYSAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMK 183
Query: 187 SMTLKEAINHVLTILKQVMEE 207
MT ++ + V I+ V +E
Sbjct: 184 EMTCRDVVKEVAKIIYIVHDE 204
>pdb|1IRU|G Chain G, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|U Chain U, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 254
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 113/201 (56%), Gaps = 5/201 (2%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKI 67
YD +TFSP+GR+FQVEYA++A++ STAIGI +GVV EK + S L E S K++
Sbjct: 7 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRL 66
Query: 68 VEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSD 127
+D+H+G A +GL+AD+R L D AR E +N + + ++ +A V+ +
Sbjct: 67 FNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAY---- 122
Query: 128 EESAMSRPFGVAMLFAGLD-SKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHE 186
+ RPFG + + + G QL+ +DPSG + AIG + A+ ++++ +
Sbjct: 123 TLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMK 182
Query: 187 SMTLKEAINHVLTILKQVMEE 207
MT ++ + V I+ V +E
Sbjct: 183 EMTCRDIVKEVAKIIYIVHDE 203
>pdb|1RYP|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|A Chain A, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|O Chain O, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|A Chain A, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|O Chain O, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|A Chain A, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|V Chain V, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|A Chain A, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|O Chain O, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|A Chain A, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|O Chain O, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|A Chain A, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|O Chain O, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|A Chain A, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|O Chain O, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|A Chain A, Proteasome Inhibition By Fellutamide B
pdb|3D29|O Chain O, Proteasome Inhibition By Fellutamide B
pdb|3E47|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|A Chain A, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|O Chain O, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3NZJ|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG4|A Chain A, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|O Chain O, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|A Chain A, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|O Chain O, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|A Chain A, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|O Chain O, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|A Chain A, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|O Chain O, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|A Chain A, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|O Chain O, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|A Chain A, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|O Chain O, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|A Chain A, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|O Chain O, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|A Chain A, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|O Chain O, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4B4T|B Chain B, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|B Chain B, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|A Chain A, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|O Chain O, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|A Chain A, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|O Chain O, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 250
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 123/218 (56%), Gaps = 14/218 (6%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKI 67
Y + TFSP G+L Q++YA+ A+K G T++GI + GVV+A EK+ +S L ++ K+
Sbjct: 5 YSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKV 64
Query: 68 VEIDKHIGCAASGLIADSRILTDRAR-VECANHWFTYDE----KMDIESVAQAVSNLAIQ 122
+ IG SG+ D R+L D++R V ++ Y E K+ + VA+ +
Sbjct: 65 SLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEAT-- 122
Query: 123 FGDSDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQ 181
+S RPFGV++L AG D G L+ +DPSG+Y + A AIG GS A+ L+
Sbjct: 123 ------QSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLE 176
Query: 182 EVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTV 219
+ +++ + L++AI+ L LK+ +E + N +EL +
Sbjct: 177 KRWNDELELEDAIHIALLTLKESVEGEFNGDTIELAII 214
>pdb|1IRU|A Chain A, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|O Chain O, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 246
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 120/219 (54%), Gaps = 8/219 (3%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGISTSEGVVLAAEKRITSVLMEPSSIKK 66
+DR + FSPEGRL+QVEYA +AI G T++ + + V+ +K++ L++ S++
Sbjct: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 68
Query: 67 IVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDS 126
+ +I ++IGC +G+ ADSR RAR E AN + Y ++ ++ + + +++++ +
Sbjct: 69 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVY--- 125
Query: 127 DEESAMSRPFGVAMLFAGLD-SKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYH 185
++A RP G M+ G+D +GPQ++ DP+G Y F A A G + L++
Sbjct: 126 -TQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVK 184
Query: 186 ESM--TLKEAINHVLTILKQVMEEKLNSTNVELCTVTAD 222
+ T ++ + +T L V+ + +E+ VT +
Sbjct: 185 KKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVE 223
>pdb|3UNB|G Chain G, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|U Chain U, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|II Chain i, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|WW Chain w, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|G Chain G, Mouse Constitutive 20s Proteasome
pdb|3UNE|U Chain U, Mouse Constitutive 20s Proteasome
pdb|3UNE|II Chain i, Mouse Constitutive 20s Proteasome
pdb|3UNE|WW Chain w, Mouse Constitutive 20s Proteasome
pdb|3UNF|G Chain G, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|U Chain U, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|G Chain G, Mouse 20s Immunoproteasome
pdb|3UNH|U Chain U, Mouse 20s Immunoproteasome
Length = 246
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 119/219 (54%), Gaps = 8/219 (3%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGISTSEGVVLAAEKRITSVLMEPSSIKK 66
+DR + FSPEGRL+QVEYA +AI G T++ + + V+ +K++ L++ S++
Sbjct: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 68
Query: 67 IVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDS 126
+ +I + IGC +G+ ADSR RAR E AN + Y ++ ++ + + +++++ +
Sbjct: 69 LFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVY--- 125
Query: 127 DEESAMSRPFGVAMLFAGLD-SKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYH 185
++A RP G M+ G+D +GPQ++ DP+G Y F A A G + L++
Sbjct: 126 -TQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVK 184
Query: 186 ESM--TLKEAINHVLTILKQVMEEKLNSTNVELCTVTAD 222
+ T ++ + +T L V+ + +E+ VT +
Sbjct: 185 KKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVE 223
>pdb|1VSY|D Chain D, Proteasome Activator Complex
pdb|1VSY|R Chain R, Proteasome Activator Complex
pdb|3L5Q|I Chain I, Proteasome Activator Complex
pdb|3L5Q|U Chain U, Proteasome Activator Complex
Length = 227
Score = 120 bits (301), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 120/211 (56%), Gaps = 18/211 (8%)
Query: 21 LFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLME----PSSIKKIVEIDKHIGC 76
+FQVEYA+EA+K G+ A+G+ VVL E+R T L + PS + KI D H+
Sbjct: 1 IFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKI---DSHVVL 57
Query: 77 AASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPF 136
+ SGL ADSRIL ++ARVE +H T ++ + +E + + V+ + ++ +S RPF
Sbjct: 58 SFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYT----QSGGVRPF 113
Query: 137 GVAMLFAGLDSKG--PQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHES---MTLK 191
GV+ L AG D + P+L+ +PSG Y+ + A+ IG S+ ++ L++ Y T++
Sbjct: 114 GVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVE 173
Query: 192 EAINHVLTILKQVMEEKLNSTNVELCTVTAD 222
E + + L +V++ + N+E+ V D
Sbjct: 174 ECVKLTVRSLLEVVQ--TGAKNIEITVVKPD 202
>pdb|1VSY|B Chain B, Proteasome Activator Complex
pdb|1VSY|P Chain P, Proteasome Activator Complex
pdb|3L5Q|G Chain G, Proteasome Activator Complex
pdb|3L5Q|S Chain S, Proteasome Activator Complex
Length = 231
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 114/203 (56%), Gaps = 14/203 (6%)
Query: 23 QVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLI 82
Q++YA+ A+K G T++GI + GVV+A EK+ +S L ++ K+ + IG SG+
Sbjct: 1 QIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMG 60
Query: 83 ADSRILTDRAR-VECANHWFTYDE----KMDIESVAQAVSNLAIQFGDSDEESAMSRPFG 137
D R+L D++R V ++ Y E K+ + VA+ + +S RPFG
Sbjct: 61 PDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEAT--------QSGGVRPFG 112
Query: 138 VAMLFAGLDS-KGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINH 196
V++L AG D G L+ +DPSG+Y + A AIG GS A+ L++ +++ + L++AI+
Sbjct: 113 VSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHI 172
Query: 197 VLTILKQVMEEKLNSTNVELCTV 219
L LK+ +E + N +EL +
Sbjct: 173 ALLTLKESVEGEFNGDTIELAII 195
>pdb|1RYP|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|G Chain G, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|U Chain U, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|G Chain G, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|G Chain G, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|U Chain U, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|G Chain G, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|U Chain U, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|G Chain G, Proteasome Inhibition By Fellutamide B
pdb|3D29|U Chain U, Proteasome Inhibition By Fellutamide B
pdb|3E47|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|G Chain G, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|U Chain U, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|A Chain A, Proteasome Activator Complex
pdb|1VSY|O Chain O, Proteasome Activator Complex
pdb|3L5Q|A Chain A, Proteasome Activator Complex
pdb|3L5Q|C Chain C, Proteasome Activator Complex
pdb|3MG4|G Chain G, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|U Chain U, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|G Chain G, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|U Chain U, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|G Chain G, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|U Chain U, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|G Chain G, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|U Chain U, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|G Chain G, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|U Chain U, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|G Chain G, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|U Chain U, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|G Chain G, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|U Chain U, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|G Chain G, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|U Chain U, 20s Yeast Proteasome In Complex With Glidobactin
Length = 243
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 117/229 (51%), Gaps = 13/229 (5%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAI-KLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKK 66
YDR + FSPEGRL+QVEYA +A + ++ + + V+ ++K++ L++P+++
Sbjct: 3 YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSY 62
Query: 67 IVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDS 126
I I + IG +G I D+R RA+ E A + Y M + +A+ ++NL+ +
Sbjct: 63 IFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIY--- 119
Query: 127 DEESAMSRPFGVAMLFAGLDSK-GPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYH 185
+ A RP GV + F +D + GP ++ DP+G Y + A A G + +L+ +
Sbjct: 120 -TQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFK 178
Query: 186 ESM-------TLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHL 227
+S + ++ + +T + + + + ++E+ T DK + L
Sbjct: 179 KSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDKFFTL 227
>pdb|1G0U|G Chain G, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|U Chain U, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|G Chain G, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|U Chain U, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|G Chain G, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|U Chain U, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3UN4|G Chain G, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|U Chain U, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|G Chain G, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|U Chain U, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|A Chain A, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|A Chain A, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 252
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 117/229 (51%), Gaps = 13/229 (5%)
Query: 8 YDRGVNTFSPEGRLFQVEYAIEAI-KLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKK 66
YDR + FSPEGRL+QVEYA +A + ++ + + V+ ++K++ L++P+++
Sbjct: 12 YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSY 71
Query: 67 IVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDS 126
I I + IG +G I D+R RA+ E A + Y M + +A+ ++NL+ +
Sbjct: 72 IFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIY--- 128
Query: 127 DEESAMSRPFGVAMLFAGLDSK-GPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYH 185
+ A RP GV + F +D + GP ++ DP+G Y + A A G + +L+ +
Sbjct: 129 -TQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFK 187
Query: 186 ESM-------TLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHL 227
+S + ++ + +T + + + + ++E+ T DK + L
Sbjct: 188 KSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDKFFTL 236
>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|I Chain I, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|J Chain J, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|K Chain K, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|L Chain L, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|M Chain M, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|N Chain N, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YAR|H Chain H, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|I Chain I, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|J Chain J, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|K Chain K, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|L Chain L, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|M Chain M, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|N Chain N, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAU|H Chain H, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|I Chain I, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|J Chain J, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|K Chain K, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|L Chain L, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|M Chain M, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|N Chain N, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|3IPM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 217
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 12/172 (6%)
Query: 29 EAIKLGSTAIGISTSEGVVLAAEKRIT--SVLMEPSSIKKIVEIDKHIGCAASGLIADSR 86
+ ++ G+T +GI+ + V++A E+R+T + +M + KK+ +ID + G +GL+ D++
Sbjct: 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNG-KKLFQIDTYTGMTIAGLVGDAQ 61
Query: 87 ILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLD 146
+L + E + M IE+VA +SN+ Q P+ V +L G+D
Sbjct: 62 VLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQ--------VKYMPYMVQLLVGGID 113
Query: 147 SKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVL 198
+ P +F +D +G + + GSGS L+ Y E MT+ E ++ V+
Sbjct: 114 T-APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVI 164
>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|P Chain P, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Q Chain Q, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|R Chain R, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|S Chain S, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|T Chain T, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|U Chain U, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|V Chain V, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|W Chain W, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|X Chain X, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Y Chain Y, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Z Chain Z, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|1 Chain 1, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|2 Chain 2, Proteasome From Thermoplasma Acidophilum
Length = 211
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 12/172 (6%)
Query: 29 EAIKLGSTAIGISTSEGVVLAAEKRIT--SVLMEPSSIKKIVEIDKHIGCAASGLIADSR 86
+ ++ G+T +GI+ + V++A E+R+T + +M + KK+ +ID + G +GL+ D++
Sbjct: 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNG-KKLFQIDTYTGMTIAGLVGDAQ 61
Query: 87 ILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLD 146
+L + E + M IE+VA +SN+ Q P+ V +L G+D
Sbjct: 62 VLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQ--------VKYMPYMVQLLVGGID 113
Query: 147 SKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVL 198
+ P +F +D +G + + GSGS L+ Y E MT+ E ++ V+
Sbjct: 114 T-APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVI 164
>pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|I Chain I, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|J Chain J, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|K Chain K, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|L Chain L, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|M Chain M, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|N Chain N, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|V Chain V, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|W Chain W, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|X Chain X, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C92|H Chain H, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|I Chain I, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|J Chain J, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|K Chain K, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|L Chain L, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|M Chain M, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|N Chain N, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|V Chain V, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|W Chain W, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|X Chain X, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3JRM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 203
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 12/166 (7%)
Query: 35 STAIGISTSEGVVLAAEKRIT--SVLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRA 92
+T +GI+ + V++A E+R+T + +M + KK+ +ID + G +GL+ D+++L
Sbjct: 1 TTTVGITLKDAVIMATERRVTMENFIMHKNG-KKLFQIDTYTGMTIAGLVGDAQVLVRYM 59
Query: 93 RVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQL 152
+ E + M IE+VA +SN+ Q P+ V +L G+D+ P +
Sbjct: 60 KAELELYRLQRRVNMPIEAVATLLSNMLNQ--------VKYMPYMVQLLVGGIDT-APHV 110
Query: 153 FHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVL 198
F +D +G + + GSGS L+ Y E MT+ E ++ V+
Sbjct: 111 FSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVI 156
>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|I Chain I, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|J Chain J, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|K Chain K, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|L Chain L, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|M Chain M, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|N Chain N, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 202
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 11/195 (5%)
Query: 35 STAIGISTSEGVVLAAEKRIT-SVLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRAR 93
+T +G+ +GVV+A EKR T + + KKI +I + +G + D++ L +
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIK 60
Query: 94 VECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLF 153
+E + + K + ++A SNL S P+ V +L G+DS+G ++
Sbjct: 61 IEANLYEIRRERKPTVRAIATLTSNLL--------NSYRYFPYLVQLLIGGIDSEGKSIY 112
Query: 154 HLDP-SGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAIN-HVLTILKQVMEEKLNS 211
+DP G + D A GSGS A L++ + + + EA+ V I + + +
Sbjct: 113 SIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASG 172
Query: 212 TNVELCTVTADKMYH 226
+++ +T D+ Y
Sbjct: 173 DGIDVVKITEDEFYQ 187
>pdb|3UNF|H Chain H, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|V Chain V, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|H Chain H, Mouse 20s Immunoproteasome
pdb|3UNH|V Chain V, Mouse 20s Immunoproteasome
Length = 234
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 13/190 (6%)
Query: 35 STAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRAR 93
+T G+ +GV+L A+ R T+ ++ S +KI I I C +G+ AD+ + T A
Sbjct: 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAA 60
Query: 94 VECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLF 153
+ H + + + +V + + ++ G +++ G+D GPQL+
Sbjct: 61 SKMELHALSTGREPRVATVTRILRQTLFRYQGH---------VGASLVVGGVDLNGPQLY 111
Query: 154 HLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLT--ILKQVMEEKLNS 211
+ P G+Y++ A+GSG A L++ + +MTL EA +L I ++ + +
Sbjct: 112 EVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTL-EAAQELLVEAITAGILSDLGSG 170
Query: 212 TNVELCTVTA 221
NV+ C +TA
Sbjct: 171 GNVDACVITA 180
>pdb|3UNF|K Chain K, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Y Chain Y, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|K Chain K, Mouse 20s Immunoproteasome
pdb|3UNH|Y Chain Y, Mouse 20s Immunoproteasome
Length = 204
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 79/164 (48%), Gaps = 13/164 (7%)
Query: 35 STAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRAR 93
+T + GV++A + R T+ + + K++EI+ ++ SG AD +
Sbjct: 1 TTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYWERLLA 60
Query: 94 VECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAM--LFAGLDSKGPQ 151
EC ++ E++ + + ++ +SN+ +Q+ R G++M + G D KGP
Sbjct: 61 KECRLYYLRNGERISVSAASKLLSNMMLQY----------RGMGLSMGSMICGWDKKGPG 110
Query: 152 LFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAIN 195
L+++D +GT + GSG+ A + Y + ++ +EA +
Sbjct: 111 LYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYD 154
>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|BB Chain b, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|CC Chain c, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|DD Chain d, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|EE Chain e, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|FF Chain f, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|GG Chain g, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|HH Chain h, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|II Chain i, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|JJ Chain j, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|KK Chain k, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|LL Chain l, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|MM Chain m, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|NN Chain n, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 219
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 12/192 (6%)
Query: 35 STAIGISTSEGVVLAAEKRIT-SVLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRAR 93
+T +G+ + V+LA +KR + L+ KK+ +ID +I +G + D++ +
Sbjct: 2 TTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLI 61
Query: 94 VECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLD-SKGPQL 152
E + + + A +SN+ S+ PF ++ G D +G +L
Sbjct: 62 AEAKLYKMRTGRNIPPLACATLLSNIL--------HSSRMFPFLTQIIIGGYDLLEGAKL 113
Query: 153 FHLDPSGTYTQFDA-KAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNS 211
F LDP G + A GSGS A L+ Y M+++E I L LK ME S
Sbjct: 114 FSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFS 173
Query: 212 TN-VELCTVTAD 222
N + L +T D
Sbjct: 174 GNGISLAVITKD 185
>pdb|1IRU|I Chain I, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|W Chain W, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 234
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 87/193 (45%), Gaps = 13/193 (6%)
Query: 35 STAIGISTSEGVVLAAEKRIT-SVLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRAR 93
+T G+ +G+VL A+ R T +++ + KI I +I C +G AD+ + T
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60
Query: 94 VECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPF-GVAMLFAGLDSKGPQL 152
H + + + + + + ++ R + G A++ G+D GP L
Sbjct: 61 SNLELHSLSTGRLPRVVTANRMLKQMLFRY----------RGYIGAALVLGGVDVTGPHL 110
Query: 153 FHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNS- 211
+ + P G+ + +GSGS A ++ + M +EA N V + + L S
Sbjct: 111 YSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSG 170
Query: 212 TNVELCTVTADKM 224
+N++LC ++ +K+
Sbjct: 171 SNIDLCVISKNKL 183
>pdb|3UNB|K Chain K, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Y Chain Y, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|MM Chain m, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|1 Chain 1, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|K Chain K, Mouse Constitutive 20s Proteasome
pdb|3UNE|Y Chain Y, Mouse Constitutive 20s Proteasome
pdb|3UNE|MM Chain m, Mouse Constitutive 20s Proteasome
pdb|3UNE|1 Chain 1, Mouse Constitutive 20s Proteasome
Length = 205
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 94/214 (43%), Gaps = 20/214 (9%)
Query: 35 STAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRAR 93
+T + GV++AA+ R T+ + ++KK++EI+ ++ +G AD
Sbjct: 1 TTTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60
Query: 94 VECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAM--LFAGLDSKGPQ 151
+C + E++ + + ++ ++N+ Q+ + G++M + G D +GP
Sbjct: 61 RQCRIYELRNKERISVAAASKLLANMVYQY----------KGMGLSMGTMICGWDKRGPG 110
Query: 152 LFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNS 211
L+++D G A ++GSGS A + Y + ++EA + + Q +
Sbjct: 111 LYYVDSEGNRISGTAFSVGSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQ-------A 163
Query: 212 TNVELCTVTADKMYHLYXXXXXXXXXXXVSSIHD 245
T + + A +YH+ V+ +HD
Sbjct: 164 TYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHD 197
>pdb|3NZJ|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
Length = 287
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 93/202 (46%), Gaps = 16/202 (7%)
Query: 31 IKLGSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILT 89
I G+T + G+++A + R T+ + ++KK++EI+ + +G AD +
Sbjct: 72 IAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWE 131
Query: 90 DRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAM--LFAGLDS 147
+C H E++ + + ++ +SNL Q+ + G++M + G
Sbjct: 132 TWLGSQCRLHELREKERISVAAASKILSNLVYQY----------KGAGLSMGTMICGYTR 181
Query: 148 K-GPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAIN-HVLTILKQVM 205
K GP ++++D GT + D +GSG A L Y +++++A+ +IL
Sbjct: 182 KEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAH 241
Query: 206 EEKLNSTNVELCTVTADK-MYH 226
+ + +V L VT D +YH
Sbjct: 242 RDAYSGGSVNLYHVTEDGWIYH 263
>pdb|3UNB|H Chain H, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|V Chain V, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|JJ Chain j, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|XX Chain x, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|H Chain H, Mouse Constitutive 20s Proteasome
pdb|3UNE|V Chain V, Mouse Constitutive 20s Proteasome
pdb|3UNE|JJ Chain j, Mouse Constitutive 20s Proteasome
pdb|3UNE|XX Chain x, Mouse Constitutive 20s Proteasome
Length = 234
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 84/195 (43%), Gaps = 11/195 (5%)
Query: 35 STAIGISTSEGVVLAAEKRIT-SVLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRAR 93
+T G+ +G+VL A+ R T +++ + KI I +I C +G AD+ + T
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60
Query: 94 VECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLF 153
H T + + + + + ++ G A++ G+D GP L+
Sbjct: 61 SNLELHSLTTGRLPRVVTANRMLKQMLFRYQGY---------IGAALVLGGVDVTGPHLY 111
Query: 154 HLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNS-T 212
+ P G+ + +GSGS A ++ + M +EA V + + L S +
Sbjct: 112 SIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGS 171
Query: 213 NVELCTVTADKMYHL 227
N++LC ++ K+ L
Sbjct: 172 NIDLCVISKSKLDFL 186
>pdb|4B4T|5 Chain 5, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 287
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 93/202 (46%), Gaps = 16/202 (7%)
Query: 31 IKLGSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILT 89
I G+T + G+++A + R T+ + ++K+++EI+ + +G AD +
Sbjct: 72 IAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWE 131
Query: 90 DRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAM--LFAGLDS 147
+C H E++ + + ++ +SNL Q+ + G++M + G
Sbjct: 132 TWLGSQCRLHELREKERISVAAASKILSNLVYQY----------KGAGLSMGTMICGYTR 181
Query: 148 K-GPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAIN-HVLTILKQVM 205
K GP ++++D GT + D +GSG A L Y +++++A+ +IL
Sbjct: 182 KEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAH 241
Query: 206 EEKLNSTNVELCTVTADK-MYH 226
+ + +V L VT D +YH
Sbjct: 242 RDAYSGGSVNLYHVTEDGWIYH 263
>pdb|1G0U|K Chain K, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Y Chain Y, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|K Chain K, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|R Chain R, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|K Chain K, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Y Chain Y, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|K Chain K, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Y Chain Y, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|K Chain K, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Y Chain Y, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|K Chain K, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Y Chain Y, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|K Chain K, Proteasome Inhibition By Fellutamide B
pdb|3D29|Y Chain Y, Proteasome Inhibition By Fellutamide B
pdb|3E47|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Y Chain Y, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|K Chain K, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|K Chain K, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Y Chain Y, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|K Chain K, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Y Chain Y, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|K Chain K, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Y Chain Y, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|K Chain K, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Y Chain Y, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|K Chain K, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Y Chain Y, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|K Chain K, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Y Chain Y, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|1G65|K Chain K, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Y Chain Y, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|3UN4|K Chain K, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Y Chain Y, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|K Chain K, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Y Chain Y, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|K Chain K, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Y Chain Y, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|K Chain K, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Y Chain Y, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|L Chain L, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|K Chain K, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Y Chain Y, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|K Chain K, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Y Chain Y, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|K Chain K, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Y Chain Y, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|K Chain K, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Y Chain Y, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|K Chain K, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Y Chain Y, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 212
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 91/198 (45%), Gaps = 16/198 (8%)
Query: 35 STAIGISTSEGVVLAAEKRITSV-LMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRAR 93
+T + G+++A + R T+ + ++KK++EI+ + +G AD +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLG 60
Query: 94 VECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAM--LFAGLDSK-GP 150
+C H E++ + + ++ +SNL Q+ + G++M + G K GP
Sbjct: 61 SQCRLHELREKERISVAAASKILSNLVYQY----------KGAGLSMGTMICGYTRKEGP 110
Query: 151 QLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAIN-HVLTILKQVMEEKL 209
++++D GT + D +GSG A L Y +++++A+ +IL +
Sbjct: 111 TIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAY 170
Query: 210 NSTNVELCTVTADK-MYH 226
+ +V L VT D +YH
Sbjct: 171 SGGSVNLYHVTEDGWIYH 188
>pdb|3NZJ|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|2 Chain 2, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 261
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 11/197 (5%)
Query: 29 EAIKLGSTAIGISTSEGVVLAAEKRIT-SVLMEPSSIKKIVEIDKHIGCAASGLIADSRI 87
+A G+T +G+ + GVV+AA+ R T ++ + K+ I I CA +G AD+
Sbjct: 24 KATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEA 83
Query: 88 LTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS 147
+T H + + S Q + ++ G ++ AG+D
Sbjct: 84 VTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKY---------QGHIGAYLIVAGVDP 134
Query: 148 KGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEE 207
G LF + G+ ++GSGS A L+ + + +T +EAI ++ +
Sbjct: 135 TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWN 194
Query: 208 KLNS-TNVELCTVTADK 223
L S +NV++C + K
Sbjct: 195 DLGSGSNVDVCVMEIGK 211
>pdb|1IRU|L Chain L, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Z Chain Z, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 204
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 77/164 (46%), Gaps = 13/164 (7%)
Query: 35 STAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRAR 93
+T + GV++AA+ R T+ + ++KK++EI+ ++ +G AD
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60
Query: 94 VECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAM--LFAGLDSKGPQ 151
+C + E++ + + ++ ++N+ Q+ + G++M + G D +GP
Sbjct: 61 RQCRIYELRNKERISVAAASKLLANMVYQY----------KGMGLSMGTMICGWDKRGPG 110
Query: 152 LFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAIN 195
L+++D G ++GSGS A + Y + +++A +
Sbjct: 111 LYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYD 154
>pdb|1RYP|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Z Chain Z, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1FNT|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Z Chain Z, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Z Chain Z, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1VSY|L Chain L, Proteasome Activator Complex
pdb|1VSY|Z Chain Z, Proteasome Activator Complex
pdb|3L5Q|P Chain P, Proteasome Activator Complex
pdb|3L5Q|2 Chain 2, Proteasome Activator Complex
Length = 212
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 91/198 (45%), Gaps = 16/198 (8%)
Query: 35 STAIGISTSEGVVLAAEKRITSV-LMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRAR 93
+T + G+++A + R T+ + ++K+++EI+ + +G AD +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLG 60
Query: 94 VECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAM--LFAGLDSK-GP 150
+C H E++ + + ++ +SNL Q+ + G++M + G K GP
Sbjct: 61 SQCRLHELREKERISVAAASKILSNLVYQY----------KGAGLSMGTMICGYTRKEGP 110
Query: 151 QLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAIN-HVLTILKQVMEEKL 209
++++D GT + D +GSG A L Y +++++A+ +IL +
Sbjct: 111 TIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAY 170
Query: 210 NSTNVELCTVTADK-MYH 226
+ +V L VT D +YH
Sbjct: 171 SGGSVNLYHVTEDGWIYH 188
>pdb|1RYP|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|H Chain H, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|V Chain V, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|H Chain H, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|V Chain V, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|H Chain H, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|O Chain O, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|H Chain H, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|V Chain V, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|H Chain H, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|V Chain V, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|H Chain H, Proteasome Inhibition By Fellutamide B
pdb|3D29|V Chain V, Proteasome Inhibition By Fellutamide B
pdb|3E47|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|H Chain H, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|V Chain V, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|I Chain I, Proteasome Activator Complex
pdb|1VSY|W Chain W, Proteasome Activator Complex
pdb|3L5Q|M Chain M, Proteasome Activator Complex
pdb|3L5Q|Y Chain Y, Proteasome Activator Complex
pdb|3MG4|H Chain H, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|V Chain V, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|H Chain H, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|V Chain V, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|H Chain H, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|V Chain V, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|H Chain H, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|V Chain V, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|H Chain H, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|V Chain V, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|H Chain H, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|V Chain V, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|H Chain H, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|V Chain V, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|H Chain H, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|V Chain V, 20s Yeast Proteasome In Complex With Glidobactin
Length = 222
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 11/191 (5%)
Query: 35 STAIGISTSEGVVLAAEKRIT-SVLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRAR 93
+T +G+ + GVV+AA+ R T ++ + K+ I I CA +G AD+ +T
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60
Query: 94 VECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLF 153
H + + S Q + ++ G ++ AG+D G LF
Sbjct: 61 SNIELHSLYTSREPRVVSALQMLKQHLFKY---------QGHIGAYLIVAGVDPTGSHLF 111
Query: 154 HLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNS-T 212
+ G+ ++GSGS A L+ + + +T +EAI ++ + L S +
Sbjct: 112 SIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGS 171
Query: 213 NVELCTVTADK 223
NV++C + K
Sbjct: 172 NVDVCVMEIGK 182
>pdb|1FNT|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|H Chain H, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|V Chain V, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|H Chain H, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|V Chain V, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3UN4|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4G4S|I Chain I, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 232
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 11/191 (5%)
Query: 35 STAIGISTSEGVVLAAEKRIT-SVLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRAR 93
+T +G+ + GVV+AA+ R T ++ + K+ I I CA +G AD+ +T
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60
Query: 94 VECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLF 153
H + + S Q + ++ G ++ AG+D G LF
Sbjct: 61 SNIELHSLYTSREPRVVSALQMLKQHLFKY---------QGHIGAYLIVAGVDPTGSHLF 111
Query: 154 HLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNS-T 212
+ G+ ++GSGS A L+ + + +T +EAI ++ + L S +
Sbjct: 112 SIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGS 171
Query: 213 NVELCTVTADK 223
NV++C + K
Sbjct: 172 NVDVCVMEIGK 182
>pdb|3UNB|N Chain N, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|BB Chain b, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|PP Chain p, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|4 Chain 4, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|N Chain N, Mouse Constitutive 20s Proteasome
pdb|3UNE|BB Chain b, Mouse Constitutive 20s Proteasome
pdb|3UNE|PP Chain p, Mouse Constitutive 20s Proteasome
pdb|3UNE|4 Chain 4, Mouse Constitutive 20s Proteasome
Length = 205
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 11/182 (6%)
Query: 35 STAIGISTSEGVVLAAEKRITSVLMEPSSIK-KIVEIDKHIGCAASGLIADSRILTDRAR 93
+T + + + GVVL A+ R T+ + + K+ I HI C SG AD++ + D
Sbjct: 1 TTIMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVT 60
Query: 94 VECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSK-GPQL 152
+ H +E + + A + ++ E M+ ++ AG D + G Q+
Sbjct: 61 YQLGFHSIELNEPPLVHTAASLFKEMCYRY----REDLMA-----GIIIAGWDPQEGGQV 111
Query: 153 FHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNST 212
+ + G + GSGS + Y E MT E + L ME +S
Sbjct: 112 YSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSG 171
Query: 213 NV 214
V
Sbjct: 172 GV 173
>pdb|1IRU|H Chain H, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|V Chain V, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 205
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 72/182 (39%), Gaps = 11/182 (6%)
Query: 35 STAIGISTSEGVVLAAEKRITSVLMEPSSIK-KIVEIDKHIGCAASGLIADSRILTDRAR 93
+T + + GVVL A+ R T+ + + K+ I I C SG AD++ + D
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVT 60
Query: 94 VECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSK-GPQL 152
+ H +E + + A + ++ E M+ ++ AG D + G Q+
Sbjct: 61 YQLGFHSIELNEPPLVHTAASLFKEMCYRY----REDLMA-----GIIIAGWDPQEGGQV 111
Query: 153 FHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNST 212
+ + G + GSGS + Y E MT +E + L ME +S
Sbjct: 112 YSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 171
Query: 213 NV 214
V
Sbjct: 172 GV 173
>pdb|3UNB|L Chain L, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Z Chain Z, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|NN Chain n, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|2 Chain 2, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|L Chain L, Mouse Constitutive 20s Proteasome
pdb|3UNE|Z Chain Z, Mouse Constitutive 20s Proteasome
pdb|3UNE|NN Chain n, Mouse Constitutive 20s Proteasome
pdb|3UNE|2 Chain 2, Mouse Constitutive 20s Proteasome
pdb|3UNF|L Chain L, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Z Chain Z, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|L Chain L, Mouse 20s Immunoproteasome
pdb|3UNH|Z Chain Z, Mouse 20s Immunoproteasome
Length = 213
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 28/205 (13%)
Query: 34 GSTAIGISTSEGVVLAAEKRITS--VLMEPSSIKKIVEIDKH-IGCAASGLIADSRILTD 90
G T + I+ + ++A++ R++ + S K DK IGC SG D LT
Sbjct: 9 GGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGC--SGFHGDCLTLTK 66
Query: 91 --RARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSK 148
AR++ H + ++ M ++A +S + S P+ V + GLD +
Sbjct: 67 IIEARLKMYKH--SNNKAMTTGAIAAMLSTILY--------SRRFFPYYVYNIIGGLDEE 116
Query: 149 GP-QLFHLDPSGTYTQFDAKAIGSGSEGAQ---------QSLQEVYHESMTLKEAINHVL 198
G ++ DP G+Y + KA GS S Q +++Q V H +TL A+ V
Sbjct: 117 GKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVK 176
Query: 199 TILKQVMEEKLNSTN-VELCTVTAD 222
+ E + + + + +C VT +
Sbjct: 177 DVFISAAERDVYTGDALRICIVTKE 201
>pdb|1RYP|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|J Chain J, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|X Chain X, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|J Chain J, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|X Chain X, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|J Chain J, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|J Chain J, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|X Chain X, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|J Chain J, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|X Chain X, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|J Chain J, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|X Chain X, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|J Chain J, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|X Chain X, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|J Chain J, Proteasome Inhibition By Fellutamide B
pdb|3D29|X Chain X, Proteasome Inhibition By Fellutamide B
pdb|3E47|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|J Chain J, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|X Chain X, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|K Chain K, Proteasome Activator Complex
pdb|1VSY|Y Chain Y, Proteasome Activator Complex
pdb|3L5Q|O Chain O, Proteasome Activator Complex
pdb|3L5Q|1 Chain 1, Proteasome Activator Complex
pdb|3NZJ|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG4|J Chain J, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|X Chain X, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|J Chain J, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|X Chain X, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|J Chain J, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|X Chain X, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|J Chain J, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|X Chain X, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|J Chain J, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|X Chain X, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|J Chain J, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|X Chain X, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|J Chain J, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|X Chain X, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|J Chain J, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|X Chain X, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4B4T|4 Chain 4, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|K Chain K, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|J Chain J, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|X Chain X, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|J Chain J, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|X Chain X, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 198
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 22/181 (12%)
Query: 38 IGISTSEGVVLAAEKRIT---SVLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARV 94
+GI + V+LA+ K +T SVL + S K ++ H + +G D+ + +
Sbjct: 5 LGIRVQDSVILASSKAVTRGISVLKD--SDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQA 62
Query: 95 ECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMS----RPFGVAMLFAGLDSK-- 148
Y + D E QAVS+ Q E A S RP+ V +L G D K
Sbjct: 63 NIQ----LYSIREDYELSPQAVSSFVRQ------ELAKSIRSRRPYQVNVLIGGYDKKKN 112
Query: 149 GPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEK 208
P+L+ +D GT + A G L Y MT +E ++ +L + Q +E++
Sbjct: 113 KPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLD-LLKLCVQELEKR 171
Query: 209 L 209
+
Sbjct: 172 M 172
>pdb|1IRU|M Chain M, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|1 Chain 1, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 213
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 28/205 (13%)
Query: 34 GSTAIGISTSEGVVLAAEKRITS--VLMEPSSIKKIVEIDKH-IGCAASGLIADSRILTD 90
G T + I+ + ++A++ R++ + S K DK IGC SG D LT
Sbjct: 9 GGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGC--SGFHGDCLTLTK 66
Query: 91 --RARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSK 148
AR++ H + ++ M ++A +S + S P+ V + GLD +
Sbjct: 67 IIEARLKMYKH--SNNKAMTTGAIAAMLSTILY--------SRRFFPYYVYNIIGGLDEE 116
Query: 149 GP-QLFHLDPSGTYTQFDAKAIGSGSEGAQ---------QSLQEVYHESMTLKEAINHVL 198
G ++ DP G+Y + KA GS S Q +++Q V H ++L A+ V
Sbjct: 117 GKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVK 176
Query: 199 TILKQVMEEKLNSTN-VELCTVTAD 222
+ E + + + + +C VT +
Sbjct: 177 DVFISAAERDVYTGDALRICIVTKE 201
>pdb|1RYP|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
Length = 205
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 80/187 (42%), Gaps = 14/187 (7%)
Query: 31 IKLGSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILT 89
+ LG++ + ++ +GV+L A+ R T+ + K+ + I C SG AD++ +
Sbjct: 6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIA 65
Query: 90 DRARVECANHWFTYDEKMDIESVAQAVSNLA-IQFGDSDEESAMSRPFGVAMLFAGLDSK 148
D + H Y + S A S + + + D +A ++ AG D K
Sbjct: 66 DIVQY----HLELYTSQYGTPSTETAASVFKELCYENKDNLTA-------GIIVAGYDDK 114
Query: 149 GP-QLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEE 207
+++ + G+ + GSGS + + E+M+ +E ++ + L Q ++
Sbjct: 115 NKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKW 174
Query: 208 KLNSTNV 214
+S V
Sbjct: 175 DGSSGGV 181
>pdb|3NZJ|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|1 Chain 1, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 215
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 80/187 (42%), Gaps = 14/187 (7%)
Query: 31 IKLGSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILT 89
+ LG++ + ++ +GV+L A+ R T+ + K+ + I C SG AD++ +
Sbjct: 16 VSLGTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIA 75
Query: 90 DRARVECANHWFTYDEKMDIESVAQAVSNLA-IQFGDSDEESAMSRPFGVAMLFAGLDSK 148
D + H Y + S A S + + + D +A ++ AG D K
Sbjct: 76 DIVQY----HLELYTSQYGTPSTETAASVFKELCYENKDNLTA-------GIIVAGYDDK 124
Query: 149 GP-QLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEE 207
+++ + G+ + GSGS + + E+M+ +E ++ + L Q ++
Sbjct: 125 NKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKW 184
Query: 208 KLNSTNV 214
+S V
Sbjct: 185 DGSSGGV 191
>pdb|1G65|N Chain N, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|2 Chain 2, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|N Chain N, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|2 Chain 2, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|N Chain N, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|U Chain U, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|N Chain N, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|2 Chain 2, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|N Chain N, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|2 Chain 2, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|N Chain N, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|1 Chain 1, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|N Chain N, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|1 Chain 1, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|N Chain N, Proteasome Inhibition By Fellutamide B
pdb|3D29|2 Chain 2, Proteasome Inhibition By Fellutamide B
pdb|3E47|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|N Chain N, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|2 Chain 2, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|N Chain N, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|2 Chain 2, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|N Chain N, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|2 Chain 2, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|N Chain N, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|2 Chain 2, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|N Chain N, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|2 Chain 2, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|N Chain N, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|2 Chain 2, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|N Chain N, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|BB Chain b, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|N Chain N, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|BB Chain b, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|N Chain N, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|BB Chain b, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|H Chain H, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|N Chain N, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|BB Chain b, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|N Chain N, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|BB Chain b, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 196
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 77/183 (42%), Gaps = 14/183 (7%)
Query: 35 STAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRAR 93
++ + ++ +GV+L A+ R T+ + K+ + I C SG AD++ + D +
Sbjct: 1 TSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQ 60
Query: 94 VECANHWFTYDEKMDIESVAQAVSNLA-IQFGDSDEESAMSRPFGVAMLFAGLDSKGP-Q 151
H Y + S A S + + + D +A ++ AG D K +
Sbjct: 61 Y----HLELYTSQYGTPSTETAASVFKELCYENKDNLTA-------GIIVAGYDDKNKGE 109
Query: 152 LFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNS 211
++ + G+ + GSGS + + E+M+ +E ++ + L Q ++ +S
Sbjct: 110 VYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSS 169
Query: 212 TNV 214
V
Sbjct: 170 GGV 172
>pdb|1VSY|H Chain H, Proteasome Activator Complex
pdb|1VSY|V Chain V, Proteasome Activator Complex
pdb|3L5Q|B Chain B, Proteasome Activator Complex
pdb|3L5Q|D Chain D, Proteasome Activator Complex
Length = 196
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 77/183 (42%), Gaps = 14/183 (7%)
Query: 35 STAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRAR 93
++ + ++ +GV+L A+ R T+ + K+ + I C SG AD++ + D +
Sbjct: 1 ASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQ 60
Query: 94 VECANHWFTYDEKMDIESVAQAVSNLA-IQFGDSDEESAMSRPFGVAMLFAGLDSKGP-Q 151
H Y + S A S + + + D +A ++ AG D K +
Sbjct: 61 Y----HLELYTSQYGTPSTETAASVFKELCYENKDNLTA-------GIIVAGYDDKNKGE 109
Query: 152 LFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNS 211
++ + G+ + GSGS + + E+M+ +E ++ + L Q ++ +S
Sbjct: 110 VYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSS 169
Query: 212 TNV 214
V
Sbjct: 170 GGV 172
>pdb|1Q5Q|A Chain A, The Rhodococcus 20s Proteasome
pdb|1Q5Q|B Chain B, The Rhodococcus 20s Proteasome
pdb|1Q5Q|C Chain C, The Rhodococcus 20s Proteasome
pdb|1Q5Q|D Chain D, The Rhodococcus 20s Proteasome
pdb|1Q5Q|E Chain E, The Rhodococcus 20s Proteasome
pdb|1Q5Q|F Chain F, The Rhodococcus 20s Proteasome
pdb|1Q5Q|G Chain G, The Rhodococcus 20s Proteasome
pdb|2H6J|A Chain A, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|B Chain B, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|C Chain C, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|D Chain D, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|E Chain E, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|F Chain F, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
pdb|2H6J|G Chain G, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
Length = 259
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 87/204 (42%), Gaps = 24/204 (11%)
Query: 25 EYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSS-IKKIVEIDKHIGCAASGLIA 83
E A + I G + + ++ +GV+ AE PS+ + K+ E+ +G AA G
Sbjct: 18 ELARKGIARGRSVVVLTFRDGVLFVAEN--------PSTALHKVSELYDRLGFAAVGKYN 69
Query: 84 DSRILTDRARVECANHWFTYDEKMDI--ESVAQAVSN-LAIQFGDSDEESAMSRPFGVAM 140
+ L V ++YD + D+ S+A A + L F + +P+ V +
Sbjct: 70 EFENLRRAGIVHADMRGYSYDRR-DVTGRSLANAYAQTLGTIF------TEQPKPYEVEI 122
Query: 141 LFAGL----DSKGPQLFHLDPSGTYT-QFDAKAIGSGSEGAQQSLQEVYHESMTLKEAIN 195
A + K PQL+ + G+ + +G +E +++E Y + L+ A+
Sbjct: 123 CVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVG 182
Query: 196 HVLTILKQVMEEKLNSTNVELCTV 219
+ L+Q + NV++ ++
Sbjct: 183 IAVNALRQGGAGEGEKRNVDVASL 206
>pdb|1Q5R|A Chain A, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|B Chain B, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|C Chain C, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|D Chain D, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|E Chain E, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|F Chain F, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
pdb|1Q5R|G Chain G, The Rhodococcus 20s Proteasome With Unprocessed
Pro-Peptides
Length = 259
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 87/204 (42%), Gaps = 24/204 (11%)
Query: 25 EYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSS-IKKIVEIDKHIGCAASGLIA 83
E A + I G + + ++ +GV+ AE PS+ + K+ E+ +G AA G
Sbjct: 18 ELARKGIARGRSVVVLTFRDGVLFVAEN--------PSTALHKVSELYDRLGFAAVGKYN 69
Query: 84 DSRILTDRARVECANHWFTYDEKMDI--ESVAQAVSN-LAIQFGDSDEESAMSRPFGVAM 140
+ L V ++YD + D+ S+A A + L F + +P+ V +
Sbjct: 70 EFENLRRAGIVHADMRGYSYDRR-DVTGRSLANAYAQTLGTIF------TEQPKPYEVEI 122
Query: 141 LFAGL----DSKGPQLFHLDPSGTYT-QFDAKAIGSGSEGAQQSLQEVYHESMTLKEAIN 195
A + K PQL+ + G+ + +G +E +++E Y + L+ A+
Sbjct: 123 CVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVG 182
Query: 196 HVLTILKQVMEEKLNSTNVELCTV 219
+ L+Q + NV++ ++
Sbjct: 183 IAVNALRQGGAGEGEKRNVDVASL 206
>pdb|1SVC|P Chain P, Nfkb P50 Homodimer Bound To Dna
Length = 365
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 15/53 (28%)
Query: 151 QLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQ 203
Q+FHLDPS T+T F+ EV+ M L A L IL+Q
Sbjct: 12 QMFHLDPSLTHTIFNP---------------EVFQPQMALPTADGPYLQILEQ 49
>pdb|2GHA|A Chain A, Thermotoga Maritima Maltotriose Binding Protein Bound With
Maltotriose
pdb|2GHA|B Chain B, Thermotoga Maritima Maltotriose Binding Protein Bound With
Maltotriose
pdb|2GHB|A Chain A, Thermotoga Maritima Maltotriose Binding Protein, Ligand
Free Form
pdb|2GHB|B Chain B, Thermotoga Maritima Maltotriose Binding Protein, Ligand
Free Form
pdb|2GHB|C Chain C, Thermotoga Maritima Maltotriose Binding Protein, Ligand
Free Form
Length = 382
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKL 33
++ Y+ +N FS G+L+ + YA+EAI L
Sbjct: 85 KNFYETALNAFSYGGKLYGIPYAMEAIAL 113
>pdb|3UNF|N Chain N, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|BB Chain b, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|N Chain N, Mouse 20s Immunoproteasome
pdb|3UNH|BB Chain b, Mouse 20s Immunoproteasome
Length = 199
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 82/195 (42%), Gaps = 13/195 (6%)
Query: 35 STAIGISTSEGVVLAAEKRITSVLMEPSSI-KKIVEIDKHIGCAASGLIADSRILTDRAR 93
+T + + GVV+ ++ R+++ + + K+ + + I CA SG AD++ + D A
Sbjct: 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAA 60
Query: 94 VECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSK-GPQL 152
+ H +E + + A V N++ ++ E ++ ++ AG D + G Q+
Sbjct: 61 YQLELHGLELEEPPLVLAAANVVKNISYKY----REDLLAH-----LIVAGWDQREGGQV 111
Query: 153 FHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNST 212
+ G + GSGS + Y MT +E + M +S
Sbjct: 112 YG-TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSG 170
Query: 213 NV-ELCTVTADKMYH 226
V L T+TA + H
Sbjct: 171 GVIYLVTITAAGVDH 185
>pdb|2FNC|A Chain A, Thermotoga Maritima Maltotriose Binding Protein Bound With
Maltotriose
Length = 381
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKL 33
++ YD + FS G+L+ V YA+EA+ L
Sbjct: 83 KNFYDTALKAFSYGGKLYGVPYAMEAVAL 111
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 108 DIESVAQAVSNLAIQFGDSDEESAMSRPFG 137
D A AV+ AIQ+G D +A+ PFG
Sbjct: 233 DPNEAAHAVTEQAIQYGTEDNSTAVVVPFG 262
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 108 DIESVAQAVSNLAIQFGDSDEESAMSRPFG 137
D A AV+ AIQ+G D +A+ PFG
Sbjct: 347 DPNEAAHAVTEQAIQYGTEDNSTAVVVPFG 376
>pdb|1YW6|A Chain A, Crystal Structure Of Succinylglutamate Desuccinylase From
Escherichia Coli, Northeast Structural Genomics Target
Et72.
pdb|1YW6|B Chain B, Crystal Structure Of Succinylglutamate Desuccinylase From
Escherichia Coli, Northeast Structural Genomics Target
Et72
Length = 335
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 143 AGLDSKGPQLFHLDPSGTYTQFDAKAIGS 171
AGL++ +FH +P GT+T F A+ G+
Sbjct: 184 AGLEA---LVFHQEPGGTFTHFSARHFGA 209
>pdb|2DZI|A Chain A, 2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-Like
Domain In Human Ubiquitin-Like Protein 4a (Gdx)
Length = 81
Score = 27.7 bits (60), Expect = 6.2, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 171 SGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLN 210
SGS G Q +++ + +L+ + +++ LKQ++ EKLN
Sbjct: 3 SGSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLN 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,441,871
Number of Sequences: 62578
Number of extensions: 239685
Number of successful extensions: 1259
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1055
Number of HSP's gapped (non-prelim): 99
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)