Query psy5094
Match_columns 251
No_of_seqs 131 out of 1166
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 17:09:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0176|consensus 100.0 1.6E-66 3.5E-71 408.6 22.2 239 1-239 1-240 (241)
2 cd03750 proteasome_alpha_type_ 100.0 7.4E-62 1.6E-66 409.8 30.1 226 8-237 1-226 (227)
3 PRK03996 proteasome subunit al 100.0 1.8E-60 4E-65 404.8 31.0 236 1-240 3-239 (241)
4 PTZ00246 proteasome subunit al 100.0 6.5E-60 1.4E-64 404.0 30.8 235 5-243 2-244 (253)
5 cd03751 proteasome_alpha_type_ 100.0 2.3E-58 5.1E-63 384.3 26.7 210 6-219 2-212 (212)
6 TIGR03633 arc_protsome_A prote 100.0 4.6E-58 1E-62 386.1 28.0 223 6-232 1-224 (224)
7 KOG0183|consensus 100.0 2.9E-58 6.4E-63 366.1 18.8 232 6-243 2-236 (249)
8 cd03752 proteasome_alpha_type_ 100.0 5.1E-57 1.1E-61 377.0 27.1 210 6-219 1-213 (213)
9 cd03755 proteasome_alpha_type_ 100.0 6.8E-57 1.5E-61 374.7 26.6 206 8-219 1-207 (207)
10 COG0638 PRE1 20S proteasome, a 100.0 2.3E-56 5E-61 377.3 30.1 232 6-243 1-235 (236)
11 cd03756 proteasome_alpha_arche 100.0 1.1E-56 2.5E-61 374.4 27.7 210 7-220 1-210 (211)
12 cd03749 proteasome_alpha_type_ 100.0 1.5E-56 3.2E-61 373.5 26.7 207 8-220 1-211 (211)
13 cd03754 proteasome_alpha_type_ 100.0 1.5E-56 3.2E-61 374.5 26.3 209 7-219 1-215 (215)
14 cd03753 proteasome_alpha_type_ 100.0 3.6E-56 7.7E-61 372.0 26.9 212 8-219 1-213 (213)
15 KOG0181|consensus 100.0 4.1E-57 8.9E-62 354.7 19.2 232 3-239 1-232 (233)
16 KOG0184|consensus 100.0 4.2E-56 9.2E-61 355.5 20.7 237 1-241 1-239 (254)
17 cd01911 proteasome_alpha prote 100.0 5.9E-55 1.3E-59 363.6 25.9 208 8-219 1-209 (209)
18 KOG0178|consensus 100.0 2.8E-54 6.1E-59 342.5 22.5 235 5-243 2-243 (249)
19 KOG0863|consensus 100.0 1.1E-53 2.3E-58 343.5 23.0 240 3-248 1-244 (264)
20 KOG0182|consensus 100.0 5.8E-51 1.3E-55 323.9 24.0 236 3-242 4-244 (246)
21 PTZ00488 Proteasome subunit be 100.0 1.1E-45 2.5E-50 313.7 26.0 205 30-243 35-241 (247)
22 TIGR03691 20S_bact_alpha prote 100.0 2.4E-45 5.2E-50 308.3 25.9 211 15-237 7-228 (228)
23 TIGR03690 20S_bact_beta protea 100.0 5.4E-45 1.2E-49 305.5 25.0 204 33-242 1-216 (219)
24 cd03761 proteasome_beta_type_5 100.0 8.1E-45 1.8E-49 297.8 24.6 185 35-228 1-187 (188)
25 cd03758 proteasome_beta_type_2 100.0 3.6E-44 7.8E-49 295.1 23.9 187 35-228 2-191 (193)
26 cd03760 proteasome_beta_type_4 100.0 3.6E-44 7.7E-49 296.1 23.2 189 33-228 1-195 (197)
27 cd03759 proteasome_beta_type_3 100.0 8.1E-44 1.8E-48 293.5 23.7 184 33-224 2-189 (195)
28 TIGR03634 arc_protsome_B prote 100.0 1.8E-43 3.8E-48 289.3 24.2 182 34-223 1-184 (185)
29 cd03764 proteasome_beta_archea 100.0 7.4E-43 1.6E-47 286.3 24.7 185 35-228 1-187 (188)
30 cd03757 proteasome_beta_type_1 100.0 9.5E-43 2.1E-47 290.6 23.3 186 31-224 5-202 (212)
31 cd03763 proteasome_beta_type_7 100.0 2.3E-42 5.1E-47 283.5 24.7 185 35-229 1-187 (189)
32 cd03765 proteasome_beta_bacter 100.0 1.4E-42 3E-47 291.9 22.3 189 35-224 1-202 (236)
33 cd03762 proteasome_beta_type_6 100.0 8.2E-42 1.8E-46 280.1 24.1 181 35-224 1-184 (188)
34 cd01912 proteasome_beta protea 100.0 8E-41 1.7E-45 274.3 24.4 181 35-223 1-184 (189)
35 PF00227 Proteasome: Proteasom 100.0 5.1E-41 1.1E-45 275.4 22.4 185 31-219 1-190 (190)
36 cd01906 proteasome_protease_Hs 100.0 7.8E-40 1.7E-44 266.7 24.3 179 35-219 1-182 (182)
37 KOG0175|consensus 100.0 2.3E-37 4.9E-42 252.8 17.6 209 31-248 68-278 (285)
38 KOG0177|consensus 100.0 5.2E-36 1.1E-40 234.9 17.2 187 36-229 3-192 (200)
39 KOG0179|consensus 100.0 2.2E-35 4.7E-40 234.6 18.5 189 29-225 24-226 (235)
40 KOG0174|consensus 100.0 9.7E-36 2.1E-40 234.1 15.8 201 30-239 15-219 (224)
41 KOG0173|consensus 100.0 2.9E-35 6.3E-40 239.9 17.3 188 27-223 30-219 (271)
42 KOG0185|consensus 100.0 6.7E-34 1.4E-38 229.8 14.0 228 11-246 12-252 (256)
43 PRK05456 ATP-dependent proteas 100.0 2.6E-31 5.6E-36 213.5 18.5 165 34-218 1-171 (172)
44 cd01913 protease_HslV Protease 100.0 6.4E-30 1.4E-34 204.0 18.5 163 35-218 1-170 (171)
45 cd01901 Ntn_hydrolase The Ntn 100.0 4.5E-29 9.7E-34 198.0 22.5 161 35-202 1-163 (164)
46 TIGR03692 ATP_dep_HslV ATP-dep 100.0 2.9E-29 6.2E-34 200.3 18.4 163 35-218 1-170 (171)
47 KOG0180|consensus 100.0 1.1E-28 2.3E-33 190.9 17.7 185 32-224 6-194 (204)
48 PF10584 Proteasome_A_N: Prote 99.5 1.1E-14 2.4E-19 76.1 2.3 23 8-30 1-23 (23)
49 COG3484 Predicted proteasome-t 99.3 1.1E-11 2.5E-16 99.1 10.3 188 35-223 2-202 (255)
50 COG5405 HslV ATP-dependent pro 99.2 9.9E-11 2.1E-15 90.6 11.1 168 33-220 3-176 (178)
51 PF09894 DUF2121: Uncharacteri 96.1 0.38 8.2E-06 39.1 13.7 154 35-222 2-180 (194)
52 COG4079 Uncharacterized protei 94.3 2.4 5.1E-05 35.8 13.4 169 35-236 2-196 (293)
53 KOG3361|consensus 82.3 2.4 5.2E-05 32.3 4.1 84 153-247 71-154 (157)
54 PRK08868 flagellar protein Fla 62.8 35 0.00076 26.6 6.3 32 211-242 99-132 (144)
55 PRK08452 flagellar protein Fla 58.9 39 0.00084 25.6 5.9 32 211-242 81-114 (124)
56 PRK07738 flagellar protein Fla 57.8 38 0.00082 25.5 5.6 32 211-242 74-107 (117)
57 PF03646 FlaG: FlaG protein; 55.2 22 0.00048 25.9 4.0 32 211-242 65-98 (107)
58 smart00413 ETS erythroblast tr 53.8 26 0.00057 24.8 3.9 27 215-241 20-47 (87)
59 smart00481 POLIIIAc DNA polyme 52.3 19 0.00042 23.5 3.1 32 13-44 6-38 (67)
60 PF00178 Ets: Ets-domain; Int 51.6 32 0.00069 24.2 4.2 27 216-242 21-48 (85)
61 cd06404 PB1_aPKC PB1 domain is 45.9 1E+02 0.0022 21.6 6.3 56 185-245 17-73 (83)
62 PF07499 RuvA_C: RuvA, C-termi 39.6 21 0.00046 21.9 1.6 32 168-199 12-44 (47)
63 PRK09732 hypothetical protein; 36.9 1.4E+02 0.003 22.9 6.0 36 186-224 5-40 (134)
64 COG1334 FlaG Uncharacterized f 33.9 68 0.0015 24.2 3.7 32 211-242 77-110 (120)
65 PF11211 DUF2997: Protein of u 32.9 60 0.0013 20.2 2.8 32 153-184 3-34 (48)
66 PF03928 DUF336: Domain of unk 32.8 96 0.0021 23.4 4.6 36 186-224 1-36 (132)
67 cd01784 rasfadin_RA Ubiquitin- 32.8 63 0.0014 22.9 3.2 48 184-235 19-66 (87)
68 KOG3806|consensus 32.3 57 0.0012 26.3 3.2 27 215-241 87-114 (177)
69 COG3193 GlcG Uncharacterized p 30.9 1.9E+02 0.0042 22.4 5.9 37 185-224 5-41 (141)
70 PRK14065 exodeoxyribonuclease 30.5 1.4E+02 0.003 21.1 4.5 32 174-205 32-63 (86)
71 PF08140 Cuticle_1: Crustacean 28.4 1.1E+02 0.0024 18.3 3.2 30 13-49 4-33 (40)
72 PF07797 DUF1639: Protein of u 28.0 84 0.0018 19.8 2.8 23 228-250 1-23 (50)
73 COG0279 GmhA Phosphoheptose is 27.9 76 0.0016 25.5 3.2 36 14-49 115-151 (176)
74 PF12566 DUF3748: Protein of u 27.9 40 0.00087 25.2 1.6 22 12-49 72-93 (122)
75 PF02811 PHP: PHP domain; Int 27.2 55 0.0012 25.3 2.5 31 13-43 7-38 (175)
76 PF11773 PulG: Type II secreto 25.3 79 0.0017 22.1 2.6 43 187-230 33-75 (82)
77 PF02609 Exonuc_VII_S: Exonucl 24.9 1.8E+02 0.004 18.1 4.4 31 175-205 7-37 (53)
78 PF14191 YodL: YodL-like 24.3 92 0.002 22.8 2.9 64 95-161 34-97 (103)
79 PF06057 VirJ: Bacterial virul 23.4 95 0.0021 25.5 3.2 40 96-146 37-76 (192)
80 COG4537 ComGC Competence prote 23.4 1.8E+02 0.0038 21.3 4.1 29 85-113 49-78 (107)
81 PF14804 Jag_N: Jag N-terminus 23.1 1.3E+02 0.0027 19.0 3.0 28 188-221 5-32 (52)
82 KOG0279|consensus 22.9 2E+02 0.0044 25.1 5.1 51 1-68 187-237 (315)
83 cd06402 PB1_p62 The PB1 domain 21.3 3.1E+02 0.0066 19.4 5.9 50 187-241 26-76 (87)
84 COG4728 Uncharacterized protei 21.1 97 0.0021 22.6 2.5 31 66-96 9-39 (124)
85 TIGR01764 excise DNA binding d 20.3 1.9E+02 0.0041 16.7 3.5 16 223-238 33-48 (49)
No 1
>KOG0176|consensus
Probab=100.00 E-value=1.6e-66 Score=408.64 Aligned_cols=239 Identities=71% Similarity=1.096 Sum_probs=231.5
Q ss_pred CCCCcCCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEecc
Q psy5094 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASG 80 (251)
Q Consensus 1 ~~~~~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG 80 (251)
||++|++||+.+++|||||||||||||++|++.|+|.|||+.++|||||++||.+++|+.+....||++|++||+|++||
T Consensus 1 mfltrseydrgVNTfSpEGRlfQVEYaieAikLGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SG 80 (241)
T KOG0176|consen 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSG 80 (241)
T ss_pred CcccHHHhcccccccCCCceeeehhhHHHHHhcCCceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCcccc-ccccCCcceeeEEEEEcCCCCeEEEECCCC
Q psy5094 81 LIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEE-SAMSRPFGVAMLFAGLDSKGPQLFHLDPSG 159 (251)
Q Consensus 81 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~-~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G 159 (251)
+.+|++.+++++|.+|++|++.|+++++++.+++.++++..+|....+. ..++|||||++|+||+|+.||+||+.||+|
T Consensus 81 l~aDarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSG 160 (241)
T KOG0176|consen 81 LIADARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSG 160 (241)
T ss_pred cccchHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeCCCC
Confidence 9999999999999999999999999999999999999999888776443 567899999999999999999999999999
Q ss_pred ceeecCEEEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCCEEEcCHHHHHHHHHh
Q psy5094 160 TYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLYSKEELEEELSK 239 (251)
Q Consensus 160 ~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~~~~~~~~ei~~~~~~ 239 (251)
++.+|++-|+|+|+.-+.+.|++.|+++++++||+.+++..|+.+++..++.+|+++.+|++++++++++++|++.++.+
T Consensus 161 tf~~~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeKl~~~Nvev~~vt~e~~f~~~t~EE~~~~i~~ 240 (241)
T KOG0176|consen 161 TFIRYKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEEKLNSNNVEVAVVTPEGEFHIYTPEEVEQVIKR 240 (241)
T ss_pred ceEEecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhcCccceEEEEEcccCceEecCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999998764
No 2
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.4e-62 Score=409.84 Aligned_cols=226 Identities=35% Similarity=0.640 Sum_probs=219.0
Q ss_pred CCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccchhHHHH
Q psy5094 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLIADSRI 87 (251)
Q Consensus 8 yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 87 (251)
||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+++++.+++.+||++|++|++|+++|..+|++.
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~~G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFRV 80 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHHH
Confidence 89999999999999999999999999999999999999999999999887877889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeecCEE
Q psy5094 88 LTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAK 167 (251)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~~~~ 167 (251)
+.+.++.+++.|++.++++++++.+++.|++.+|.|+++++. |||+|++||+|||++||+||++||+|++.+++++
T Consensus 81 l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~----rP~~v~~li~G~D~~g~~Ly~~d~~G~~~~~~~~ 156 (227)
T cd03750 81 LVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGV----RPFGVSLLIAGWDEGGPYLYQVDPSGSYFTWKAT 156 (227)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCC----CChheEEEEEEEeCCCCEEEEECCCCCEEeeeEE
Confidence 999999999999999999999999999999999999998766 9999999999999889999999999999999999
Q ss_pred EeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCCEEEcCHHHHHHHH
Q psy5094 168 AIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLYSKEELEEEL 237 (251)
Q Consensus 168 a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~~~~~~~~ei~~~~ 237 (251)
|+|+|+..++++||++|+++|+++||++++++||+.+.++++++++++|++|++++++++++++||++++
T Consensus 157 a~G~g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~l~~~~iev~iv~~~~~~~~~~~~ei~~~~ 226 (227)
T cd03750 157 AIGKNYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQMTEKNIEIGICGETKGFRLLTPAEIKDYL 226 (227)
T ss_pred EECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCEEECCHHHHHHHh
Confidence 9999999999999999999999999999999999999988888899999999998789999999999876
No 3
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.8e-60 Score=404.83 Aligned_cols=236 Identities=46% Similarity=0.772 Sum_probs=225.5
Q ss_pred CCCCcCCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEecc
Q psy5094 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASG 80 (251)
Q Consensus 1 ~~~~~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG 80 (251)
|...+++||.++|+|||+|||+|||||.+|+++|+|+|||+++||||||+|++.++++...++.+||+.|+++++|+++|
T Consensus 3 ~~~~~~~y~~~~~~fsp~Gr~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG 82 (241)
T PRK03996 3 MQPQQMGYDRAITIFSPDGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAASAG 82 (241)
T ss_pred CCccccccCCCCceECCCCeEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEcc
Confidence 34478999999999999999999999999999999999999999999999999998777778899999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCc
Q psy5094 81 LIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGT 160 (251)
Q Consensus 81 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~ 160 (251)
..+|++.++++++.+++.|++.++++++++.+++.+++.+|.|+++++. |||+|++||||||++||+||.+||+|+
T Consensus 83 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~----rP~~~~~ilaG~d~~gp~Ly~id~~G~ 158 (241)
T PRK03996 83 LVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGV----RPFGVALLIAGVDDGGPRLFETDPSGA 158 (241)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCc----cchheEEEEEEEeCCcCEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999998776 999999999999988999999999999
Q ss_pred eeecCEEEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCC-EEEcCHHHHHHHHHh
Q psy5094 161 YTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKM-YHLYSKEELEEELSK 239 (251)
Q Consensus 161 ~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~-~~~~~~~ei~~~~~~ 239 (251)
+.+++++|+|+|+..++++|++.|+++|+++||++++++||+.+.+++.++++++|++|+++++ ++.++++|++++++.
T Consensus 159 ~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~~~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~~~ 238 (241)
T PRK03996 159 YLEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEGKLDPENVEIAYIDVETKKFRKLSVEEIEKYLEK 238 (241)
T ss_pred eecceEEEECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCcEEECCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988777888999999999865 999999999999876
Q ss_pred h
Q psy5094 240 V 240 (251)
Q Consensus 240 ~ 240 (251)
+
T Consensus 239 ~ 239 (241)
T PRK03996 239 L 239 (241)
T ss_pred h
Confidence 5
No 4
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=6.5e-60 Score=403.96 Aligned_cols=235 Identities=37% Similarity=0.624 Sum_probs=222.1
Q ss_pred cCCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccC-CCccCcEEEEcCcEEEEeccchh
Q psy5094 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLME-PSSIKKIVEIDKHIGCAASGLIA 83 (251)
Q Consensus 5 ~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~ 83 (251)
.++||+++|+|||+|||+|||||++|+++|+|+|||+++||||||+|++.+++++. .++.+||++|+++++|+++|..+
T Consensus 2 ~~~yd~~~~~fsp~Grl~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~ 81 (253)
T PTZ00246 2 SRRYDSRTTTFSPEGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTA 81 (253)
T ss_pred CCccCCCCceECCCCEEhHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHH
Confidence 56899999999999999999999999999999999999999999999999997765 45689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEc-CCCCeEEEECCCCcee
Q psy5094 84 DSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLD-SKGPQLFHLDPSGTYT 162 (251)
Q Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d-~~gp~Ly~id~~G~~~ 162 (251)
|++.+.+.+|.+++.|++.++++++++.+++.++..+|.|+|+++. |||+|++||+||| +.||+||.+||+|++.
T Consensus 82 D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~----rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~ 157 (253)
T PTZ00246 82 DANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGL----RPFGVSFLFAGYDENLGYQLYHTDPSGNYS 157 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCc----ccCCEEEEEEEEeCCCCcEEEEECCCCCEe
Confidence 9999999999999999999999999999999999999999998766 9999999999999 4789999999999999
Q ss_pred ecCEEEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCC-----CEEEcCHHHHHHH
Q psy5094 163 QFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADK-----MYHLYSKEELEEE 236 (251)
Q Consensus 163 ~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~-----~~~~~~~~ei~~~ 236 (251)
+++++|+|+|+.+++++|++.|+++|+++||++++++||+.+.+++. ++++++|++|++++ .|++++++||+++
T Consensus 158 ~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~ 237 (253)
T PTZ00246 158 GWKATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAEL 237 (253)
T ss_pred cceEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHH
Confidence 99999999999999999999999999999999999999999998875 67899999999874 3899999999999
Q ss_pred HHhhccC
Q psy5094 237 LSKVSSI 243 (251)
Q Consensus 237 ~~~~~~~ 243 (251)
+.++.+.
T Consensus 238 l~~~~~~ 244 (253)
T PTZ00246 238 LKKVTQE 244 (253)
T ss_pred HHHHhhh
Confidence 9988754
No 5
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-58 Score=384.27 Aligned_cols=210 Identities=40% Similarity=0.626 Sum_probs=201.6
Q ss_pred CCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccchhHH
Q psy5094 6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLIADS 85 (251)
Q Consensus 6 ~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~ 85 (251)
++||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++.++..++.+||++|++|++|+++|..+|+
T Consensus 2 ~~yd~~~t~fsp~Grl~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 81 (212)
T cd03751 2 TGYDLSASTFSPDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLADG 81 (212)
T ss_pred CCccCCCceECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHhH
Confidence 78999999999999999999999999999999999999999999999998877767788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeecC
Q psy5094 86 RILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFD 165 (251)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~~ 165 (251)
+.+.++++.+++.|++.++++++++.+++.|++++|.|+++++. |||+|++||+|||++||+||.+||+|++.+++
T Consensus 82 ~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~----rP~~vs~li~G~D~~gp~Ly~~D~~Gs~~~~~ 157 (212)
T cd03751 82 RHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSV----RPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYF 157 (212)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCc----CCceEEEEEEEEeCCcCEEEEECCCCCEEeeE
Confidence 99999999999999999999999999999999999999998776 99999999999998899999999999999999
Q ss_pred EEEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhh-cCCCCcEEEEEE
Q psy5094 166 AKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEE-KLNSTNVELCTV 219 (251)
Q Consensus 166 ~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~-d~~~~~i~i~~i 219 (251)
++|+|+|+..++++||+.|+++||++||+++++++|+.+.+. +.+..+|||.++
T Consensus 158 ~~a~G~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 158 GCAIGKGKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred EEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 999999999999999999999999999999999999999985 468889999874
No 6
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=4.6e-58 Score=386.13 Aligned_cols=223 Identities=49% Similarity=0.811 Sum_probs=212.1
Q ss_pred CCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccchhHH
Q psy5094 6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLIADS 85 (251)
Q Consensus 6 ~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~ 85 (251)
.+||.++|+|||+|||+|||||.+++++|+|+|||+++||||||+|++.+.++...++.+||++|+++++|++||..+|+
T Consensus 1 ~~~~~~~~~f~p~Grl~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~ 80 (224)
T TIGR03633 1 MGYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVADA 80 (224)
T ss_pred CCCCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHhH
Confidence 47999999999999999999999999999999999999999999999998777777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeecC
Q psy5094 86 RILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFD 165 (251)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~~ 165 (251)
+.+.+.++.++..|++.++++++++.+++.|++.+|.|+++++. |||+|++||||+|++||+||.+||.|++.+++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~----rP~~v~~ll~G~d~~~~~Ly~~D~~G~~~~~~ 156 (224)
T TIGR03633 81 RVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGV----RPFGVALLIAGVDDGGPRLFETDPSGALLEYK 156 (224)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCc----cccceEEEEEEEeCCcCEEEEECCCCCeecce
Confidence 99999999999999999999999999999999999999998766 99999999999998899999999999999999
Q ss_pred EEEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCC-EEEcCHHH
Q psy5094 166 AKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKM-YHLYSKEE 232 (251)
Q Consensus 166 ~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~-~~~~~~~e 232 (251)
++++|+++.+++++|++.|+++|+.+||++++++||+.+.++..++++++|++|+++++ |++++++|
T Consensus 157 ~~a~G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~ 224 (224)
T TIGR03633 157 ATAIGAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVEDKLTPENVEVAYITVEDKKFRKLSVEE 224 (224)
T ss_pred EEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCCcEEECCCCC
Confidence 99999999999999999999999999999999999999988335778899999999865 88888875
No 7
>KOG0183|consensus
Probab=100.00 E-value=2.9e-58 Score=366.13 Aligned_cols=232 Identities=36% Similarity=0.655 Sum_probs=220.5
Q ss_pred CCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccchhHH
Q psy5094 6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLIADS 85 (251)
Q Consensus 6 ~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~ 85 (251)
+.||+.+|+|||||+|+|||||++|+.+|+|+||++++|+|||+++++...+|...+...||..+++|++|+++|+.+|+
T Consensus 2 srydraltvFSPDGhL~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~aDA 81 (249)
T KOG0183|consen 2 SRYDRALTVFSPDGHLFQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTADA 81 (249)
T ss_pred CccccceEEECCCCCEEeeHhHHHHHhcCceEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCccc
Confidence 67999999999999999999999999999999999999999999999988889888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCC-CeEEEECCCCceeec
Q psy5094 86 RILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKG-PQLFHLDPSGTYTQF 164 (251)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~g-p~Ly~id~~G~~~~~ 164 (251)
+.+++.+|.+|+.|+++.+.|++++.++++|+.+.|+|||.+|. ||||+++||+|||.+| |+||++||+|.+.+|
T Consensus 82 rilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~gr----RPFGvs~Li~GfD~~g~p~lyqtePsG~f~ew 157 (249)
T KOG0183|consen 82 RILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGR----RPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEW 157 (249)
T ss_pred eeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCc----ccccceEEEEeeCCCCCeeeEeeCCCcchhhh
Confidence 99999999999999999999999999999999999999999988 9999999999999776 999999999999999
Q ss_pred CEEEeCCCchhHHHHHHhhhcCC--CCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCCEEEcCHHHHHHHHHhhcc
Q psy5094 165 DAKAIGSGSEGAQQSLQEVYHES--MTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLYSKEELEEELSKVSS 242 (251)
Q Consensus 165 ~~~a~G~g~~~~~~~Le~~~~~~--~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~~~~~~~~ei~~~~~~~~~ 242 (251)
.+.|+|.+++.++.+|||.|.+. .+..++++|++++|.++. +..+++|+++++++.+.+++++.++|+.++..++.
T Consensus 158 ka~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVv--qs~~~nie~aVm~~~~~~~~l~~~~I~~~v~~ie~ 235 (249)
T KOG0183|consen 158 KANAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVV--QSGGKNIEVAVMKRRKDLKMLESEEIDDIVKEIEQ 235 (249)
T ss_pred hccccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHh--hcCCCeeEEEEEecCCceeecCHHHHHHHHHHHHH
Confidence 99999999999999999999875 788999999999988874 34677999999999977999999999999988875
Q ss_pred C
Q psy5094 243 I 243 (251)
Q Consensus 243 ~ 243 (251)
+
T Consensus 236 E 236 (249)
T KOG0183|consen 236 E 236 (249)
T ss_pred H
Confidence 4
No 8
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.1e-57 Score=376.98 Aligned_cols=210 Identities=40% Similarity=0.699 Sum_probs=200.4
Q ss_pred CCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccC-CCccCcEEEEcCcEEEEeccchhH
Q psy5094 6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLME-PSSIKKIVEIDKHIGCAASGLIAD 84 (251)
Q Consensus 6 ~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D 84 (251)
++||+.+|+|||||||+|+|||.+|+++|+|+|||+++||||||+|++.+++++. +++.+||++|+++++|+++|..+|
T Consensus 1 ~~yd~~~~~fsp~Grl~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (213)
T cd03752 1 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSD 80 (213)
T ss_pred CCcCCCCceECCCCEEhHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHh
Confidence 4799999999999999999999999999999999999999999999999997655 458999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEc-CCCCeEEEECCCCceee
Q psy5094 85 SRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLD-SKGPQLFHLDPSGTYTQ 163 (251)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d-~~gp~Ly~id~~G~~~~ 163 (251)
++.+.++++.+++.|++.++++++++.+++.|+..+|.|++.++. |||+|++|++||| +.||+||.+||+|++.+
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~----RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~ 156 (213)
T cd03752 81 ANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGL----RPFGVSFLYAGWDKHYGFQLYQSDPSGNYSG 156 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCc----ccceeEEEEEEEeCCCCCEEEEECCCCCeee
Confidence 999999999999999999999999999999999999999998766 9999999999999 46899999999999999
Q ss_pred cCEEEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEE
Q psy5094 164 FDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKL-NSTNVELCTV 219 (251)
Q Consensus 164 ~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i 219 (251)
++++|+|+++..++++||+.|+++|+++||++++++||+.+.+++. ++.+++|++|
T Consensus 157 ~~~~a~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 157 WKATAIGNNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred eeEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 9999999999999999999999999999999999999999999874 7788999875
No 9
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.8e-57 Score=374.69 Aligned_cols=206 Identities=39% Similarity=0.719 Sum_probs=197.5
Q ss_pred CCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccchhHHHH
Q psy5094 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLIADSRI 87 (251)
Q Consensus 8 yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 87 (251)
||.++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+..++.++..+||++|++|++|+++|+.+|++.
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADARV 80 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHHH
Confidence 89999999999999999999999999999999999999999999998777776778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcC-CCCeEEEECCCCceeecCE
Q psy5094 88 LTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQFDA 166 (251)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~-~gp~Ly~id~~G~~~~~~~ 166 (251)
+.+.++.+++.|++.++++++++.+++.|++++|+|+++++. |||+|++||+|||+ +||+||.+||+|++.++++
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~----rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~ 156 (207)
T cd03755 81 LINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGV----RPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKA 156 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCc----ccceeEEEEEEEeCCCCeEEEEECCCcCEEcceE
Confidence 999999999999999999999999999999999999998766 99999999999995 5899999999999999999
Q ss_pred EEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEE
Q psy5094 167 KAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTV 219 (251)
Q Consensus 167 ~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i 219 (251)
+|+|+|+..++++||+.|+++|+.+||++++++||+.+.+ .+++++||+++
T Consensus 157 ~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~--~~~~~~e~~~~ 207 (207)
T cd03755 157 NAIGRNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ--SGSKNIELAVM 207 (207)
T ss_pred EEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC--CCCCeEEEEEC
Confidence 9999999999999999999999999999999999999987 67788999875
No 10
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-56 Score=377.32 Aligned_cols=232 Identities=42% Similarity=0.715 Sum_probs=220.3
Q ss_pred CCCCCCCceeCCCCcchhhhhHHHHHhcC-CcEEEEEeCCeEEEEEeccCCCcc-cCCCccCcEEEEcCcEEEEeccchh
Q psy5094 6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLG-STAIGISTSEGVVLAAEKRITSVL-MEPSSIKKIVEIDKHIGCAASGLIA 83 (251)
Q Consensus 6 ~~yd~~~~~fsp~G~l~q~eya~~a~~~G-~tvvgi~~~~gVvla~d~~~~~~~-~~~~~~~KI~~i~~~i~~~~sG~~~ 83 (251)
.+||+.+++|||+|+++|+|||.+++.+| +|+|||+++||||||+|+|.++++ +..++.+||++|+|||+|+++|+.+
T Consensus 1 ~~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~a 80 (236)
T COG0638 1 AGYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAA 80 (236)
T ss_pred CCCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcH
Confidence 47999999999999999999999999976 999999999999999999999975 4467799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceee
Q psy5094 84 DSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQ 163 (251)
Q Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~ 163 (251)
|++.++++++.+++.|++.++++++++.+++++++++|.|+++ + |||++++||||+|+++|+||++||+|++.+
T Consensus 81 Da~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~----rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~~~ 154 (236)
T COG0638 81 DAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--G----RPYGVSLLVAGVDDGGPRLYSTDPSGSYNE 154 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--c----ccceEEEEEEEEcCCCCeEEEECCCCceee
Confidence 9999999999999999999999999999999999999999986 4 999999999999997799999999999999
Q ss_pred cCEEEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEcCHHHHHHHHHhhcc
Q psy5094 164 FDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLYSKEELEEELSKVSS 242 (251)
Q Consensus 164 ~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~~~~ei~~~~~~~~~ 242 (251)
++++|+|+|+..++++||+.|+++|+++||++++++||+.+.+||. ++++++|++|+++++++.++++|+..++..+++
T Consensus 155 ~~~~a~Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~~~~~~~~~~~~ 234 (236)
T COG0638 155 YKATAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGEEIKKLLDDLSE 234 (236)
T ss_pred cCEEEEcCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999887 777899999999878999999999999888765
Q ss_pred C
Q psy5094 243 I 243 (251)
Q Consensus 243 ~ 243 (251)
.
T Consensus 235 ~ 235 (236)
T COG0638 235 K 235 (236)
T ss_pred c
Confidence 4
No 11
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-56 Score=374.43 Aligned_cols=210 Identities=51% Similarity=0.844 Sum_probs=203.2
Q ss_pred CCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccchhHHH
Q psy5094 7 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLIADSR 86 (251)
Q Consensus 7 ~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 86 (251)
+||.++|+|||+|||+|+|||.+++++|+|+|||+++||||||+|++.+.++...++.+||++|+++++|+++|+.+|++
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 80 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADAR 80 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 59999999999999999999999999999999999999999999999987777778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeecCE
Q psy5094 87 ILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDA 166 (251)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~~~ 166 (251)
.+.+.++.+++.|++.++++++++.+++.|++.+|.|+++++. |||++++||+|||+.||+||.+||.|++.++++
T Consensus 81 ~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~----rP~~v~~ll~G~D~~~~~ly~vd~~G~~~~~~~ 156 (211)
T cd03756 81 VLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGV----RPFGVALLIAGVDDGGPRLFETDPSGAYNEYKA 156 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCe----echhEEEEEEEEeCCCCEEEEECCCCCeeeeEE
Confidence 9999999999999999999999999999999999999998766 999999999999998999999999999999999
Q ss_pred EEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEE
Q psy5094 167 KAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVT 220 (251)
Q Consensus 167 ~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~ 220 (251)
+|+|+++..++++|++.|+++|+++||++++++||+.+.+++.++++++|++|+
T Consensus 157 ~a~G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~~~~~~~v~ii~ 210 (211)
T cd03756 157 TAIGSGRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEENETPENVEIAYVT 210 (211)
T ss_pred EEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEe
Confidence 999999999999999999999999999999999999999988888899999986
No 12
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-56 Score=373.50 Aligned_cols=207 Identities=42% Similarity=0.680 Sum_probs=197.1
Q ss_pred CCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccchhHHHH
Q psy5094 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLIADSRI 87 (251)
Q Consensus 8 yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 87 (251)
||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++ .++.+||++|+++++|++||+.+|++.
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~~D~~~ 78 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSEL--SSYQKKIFKVDDHIGIAIAGLTADARV 78 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCcccc--CCccccEEEeCCCEEEEEEeChHhHHH
Confidence 899999999999999999999999999999999999999999999987775 346699999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeecCEE
Q psy5094 88 LTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAK 167 (251)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~~~~ 167 (251)
+.++++.+++.|+++++++++++.+++.+++.+|+|+++++. |||+|++||+|||+.||+||++||+|++.+++++
T Consensus 79 l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~----rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~~~~~~~ 154 (211)
T cd03749 79 LSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGR----RPYGVGLLIAGYDESGPHLFQTCPSGNYFEYKAT 154 (211)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCC----CCceEEEEEEEEcCCCCeEEEECCCcCEeeeeEE
Confidence 999999999999999999999999999999999999997665 9999999999999889999999999999999999
Q ss_pred EeCCCchhHHHHHHhhhc--CCCCHHHHHHHHHHHHHHHhhhc--CCCCcEEEEEEE
Q psy5094 168 AIGSGSEGAQQSLQEVYH--ESMTLKEAINHVLTILKQVMEEK--LNSTNVELCTVT 220 (251)
Q Consensus 168 a~G~g~~~~~~~Le~~~~--~~~s~~ea~~l~~~~l~~~~~~d--~~~~~i~i~~i~ 220 (251)
|+|+|+..++++||++|+ ++|+++||+++++++|+.+.+++ .++++|||++|+
T Consensus 155 a~G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 155 SIGARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred EECCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 999999999999999998 59999999999999999999865 788899999984
No 13
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-56 Score=374.46 Aligned_cols=209 Identities=32% Similarity=0.639 Sum_probs=199.2
Q ss_pred CCCCCCceeCCCCcchhhhhHHHHHhc-CCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccchhHH
Q psy5094 7 EYDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLIADS 85 (251)
Q Consensus 7 ~yd~~~~~fsp~G~l~q~eya~~a~~~-G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~ 85 (251)
+||+.+|+|||||||+|||||++|+++ |+|+|||+++||||||+|++.+.+++..+..+||++|+++++|+++|+.+|+
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~ 80 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADS 80 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhH
Confidence 699999999999999999999999985 8899999999999999999998877666688999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcC-CCCeEEEECCCCceeec
Q psy5094 86 RILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQF 164 (251)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~-~gp~Ly~id~~G~~~~~ 164 (251)
+.+.+++|.+++.|+++++++++++.+++.+++++|.|+++++. |||++++|+||||+ +||+||++||+|++.++
T Consensus 81 ~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~----RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~ 156 (215)
T cd03754 81 RSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYM----RPLGVSMILIGIDEELGPQLYKCDPAGYFAGY 156 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCC----cCCeeEEEEEEEeCCCCeEEEEEcCCccEEeE
Confidence 99999999999999999999999999999999999999998766 99999999999995 68999999999999999
Q ss_pred CEEEeCCCchhHHHHHHhhhcCC--C--CHHHHHHHHHHHHHHHhhhcCCCCcEEEEEE
Q psy5094 165 DAKAIGSGSEGAQQSLQEVYHES--M--TLKEAINHVLTILKQVMEEKLNSTNVELCTV 219 (251)
Q Consensus 165 ~~~a~G~g~~~~~~~Le~~~~~~--~--s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i 219 (251)
+++|+|+|+..++++||++|+++ | |.+||++++++||..+.++|+++.+++|++|
T Consensus 157 ~~~a~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~~~~~ei~~~ 215 (215)
T cd03754 157 KATAAGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDFKATEIEVGVV 215 (215)
T ss_pred EEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 99999999999999999999985 7 9999999999999999999988889999875
No 14
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.6e-56 Score=371.97 Aligned_cols=212 Identities=77% Similarity=1.114 Sum_probs=200.9
Q ss_pred CCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccchhHHHH
Q psy5094 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLIADSRI 87 (251)
Q Consensus 8 yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 87 (251)
||+++|+|||||||+|+|||++++++|+|+|||+++||||||+|++.+++++..++.+||+.|+++++|+++|+.+|++.
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADART 80 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHHH
Confidence 89999999999999999999999999999999999999999999999888777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCcccc-ccccCCcceeeEEEEEcCCCCeEEEECCCCceeecCE
Q psy5094 88 LTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEE-SAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDA 166 (251)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~-~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~~~ 166 (251)
+.+.++.+++.|++.++++++++.+++.|++.+|+|+++.+. ..+.|||+|++||+|||++||+||.+||.|++.++++
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~~~~~~ 160 (213)
T cd03753 81 LIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCDA 160 (213)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEECCCCCeecccE
Confidence 999999999999999999999999999999999999885431 2234999999999999999999999999999999999
Q ss_pred EEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEE
Q psy5094 167 KAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTV 219 (251)
Q Consensus 167 ~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i 219 (251)
+|+|+++..++++|++.|+++|+++||++++++||+.+.+++.++++++|++|
T Consensus 161 ~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~~~~~~~ei~~~ 213 (213)
T cd03753 161 KAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEEKLNSTNVELATV 213 (213)
T ss_pred EEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 99999999999999999999999999999999999999888888899999875
No 15
>KOG0181|consensus
Probab=100.00 E-value=4.1e-57 Score=354.73 Aligned_cols=232 Identities=34% Similarity=0.607 Sum_probs=224.9
Q ss_pred CCcCCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccch
Q psy5094 3 LTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLI 82 (251)
Q Consensus 3 ~~~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~ 82 (251)
|+..+|..++|+|||+|+|-|+|||..|+.+|.+.|||+-.||||||++++..+.|......+||+.|.+||+|.+||+.
T Consensus 1 m~d~~y~fslTtFSpsGKL~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmg 80 (233)
T KOG0181|consen 1 MGDFGYSFSLTTFSPSGKLVQIEYALTAVVNGQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMG 80 (233)
T ss_pred CCCcccceeeEEEcCCCceehHHHHHHHHhCCCCceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCC
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCcee
Q psy5094 83 ADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYT 162 (251)
Q Consensus 83 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~ 162 (251)
+|++.+++..|+.++.|...|++++|+..+++.++..+|+|||++|. ||||+++++||||+++|.||++||+|+++
T Consensus 81 pD~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGv----rPFGvslliaG~~~~~p~LyQvdPSGsyf 156 (233)
T KOG0181|consen 81 PDYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGV----RPFGVSLLIAGWDEGGPLLYQVDPSGSYF 156 (233)
T ss_pred CceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCc----cccceEEEEeecCCCceeEEEECCcccee
Confidence 99999999999999999999999999999999999999999999988 99999999999999999999999999999
Q ss_pred ecCEEEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCCEEEcCHHHHHHHHHh
Q psy5094 163 QFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLYSKEELEEELSK 239 (251)
Q Consensus 163 ~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~~~~~~~~ei~~~~~~ 239 (251)
.|+++|+|.+...++++||++|++++.+++++..++.+|++..+...+++||+|.++..+ +|+++++.||++++..
T Consensus 157 ~wkatA~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~fege~~~~nieigv~~~~-~F~~lt~~eI~d~l~~ 232 (233)
T KOG0181|consen 157 AWKATAMGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEGEMTAKNIEIGVCGEN-GFRRLTPAEIEDYLAS 232 (233)
T ss_pred ehhhhhhccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhccccccCceEEEEecCC-ceeecCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999955 8999999999999865
No 16
>KOG0184|consensus
Probab=100.00 E-value=4.2e-56 Score=355.53 Aligned_cols=237 Identities=37% Similarity=0.570 Sum_probs=220.0
Q ss_pred CCCCcCCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEecc
Q psy5094 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASG 80 (251)
Q Consensus 1 ~~~~~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG 80 (251)
|--+.++||+..++|||+||++|+|||+||+.+|+|+||||||||||++++|..+++|+.++...||+.|++||+|+++|
T Consensus 1 MSsIGtGyDls~s~fSpdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaG 80 (254)
T KOG0184|consen 1 MSSIGTGYDLSASTFSPDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAG 80 (254)
T ss_pred CCcccccccccceeeCCCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEec
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCc
Q psy5094 81 LIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGT 160 (251)
Q Consensus 81 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~ 160 (251)
+.+|.+.+.+++|.++.+|+.+|+.++|+..++.+++++.|.||.++.. |||||+.++++||.+||+||.++|+|.
T Consensus 81 l~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~v----RpfG~~~~~~~yd~~g~~LymiepSG~ 156 (254)
T KOG0184|consen 81 LIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSV----RPFGASTILGSYDDEGPQLYMIEPSGS 156 (254)
T ss_pred cccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhcc----ccccceEEEEEEeCCCceEEEEcCCCC
Confidence 9999999999999999999999999999999999999999999998766 999999999999999999999999999
Q ss_pred eeecCEEEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCC-EEEcCHHHHHHHHH
Q psy5094 161 YTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKM-YHLYSKEELEEELS 238 (251)
Q Consensus 161 ~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~-~~~~~~~ei~~~~~ 238 (251)
.+.++++|+|.|.+.+++.|||.--.+|+.+|+++.+.+.++.+.+..- +...||+.|+..+.+ .++.-|+||.+..+
T Consensus 157 ~~~Y~~aaiGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~el~~ea~ 236 (254)
T KOG0184|consen 157 SYGYKGAAIGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPSELLEEAE 236 (254)
T ss_pred ccceeeeeccchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcHHHHHHHH
Confidence 9999999999999999999999988899999999999999999987643 455799999988744 66666668777666
Q ss_pred hhc
Q psy5094 239 KVS 241 (251)
Q Consensus 239 ~~~ 241 (251)
++.
T Consensus 237 ~~a 239 (254)
T KOG0184|consen 237 KYA 239 (254)
T ss_pred HHH
Confidence 555
No 17
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=5.9e-55 Score=363.63 Aligned_cols=208 Identities=52% Similarity=0.873 Sum_probs=199.8
Q ss_pred CCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccchhHHHH
Q psy5094 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLIADSRI 87 (251)
Q Consensus 8 yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 87 (251)
||.++|+|||||||+|+|||++++++|+|+||++++||||||+|++.+.+++..++.+||++|+++++|+++|..+|++.
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 80 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADARV 80 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHHH
Confidence 89999999999999999999999999999999999999999999999987766788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCC-CCeEEEECCCCceeecCE
Q psy5094 88 LTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSK-GPQLFHLDPSGTYTQFDA 166 (251)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~-gp~Ly~id~~G~~~~~~~ 166 (251)
+.+.++.+++.|++.++++++++.+++++++++|.|+++++. |||+|++||+|||++ ||+||.+||.|++.++++
T Consensus 81 l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~----rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~ 156 (209)
T cd01911 81 LVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGV----RPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKA 156 (209)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCc----cChhheEEEEEEcCCCCcEEEEECCCCCeeeeeE
Confidence 999999999999999999999999999999999999998766 999999999999965 899999999999999999
Q ss_pred EEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEE
Q psy5094 167 KAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTV 219 (251)
Q Consensus 167 ~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i 219 (251)
+++|+|+..++++|++.|+++|+.+||++++++||+.+.++|.++++++|+++
T Consensus 157 ~a~G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~~~~~~~i~i~ 209 (209)
T cd01911 157 TAIGKGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDKKAKNIEIAVV 209 (209)
T ss_pred EEeCCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccCCCCcEEEEEC
Confidence 99999999999999999999999999999999999999999887778999874
No 18
>KOG0178|consensus
Probab=100.00 E-value=2.8e-54 Score=342.54 Aligned_cols=235 Identities=36% Similarity=0.625 Sum_probs=221.1
Q ss_pred cCCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccC-CCccCcEEEEcCcEEEEeccchh
Q psy5094 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLME-PSSIKKIVEIDKHIGCAASGLIA 83 (251)
Q Consensus 5 ~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~ 83 (251)
...||...|+|||||||+|||||++++.+.+|+|||.++||||||++++.+++++. +.+.+||+.|+|+++|+++|+.+
T Consensus 2 sr~ydsrttiFspEGRLyQVEyAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~ 81 (249)
T KOG0178|consen 2 SRRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTS 81 (249)
T ss_pred CcCcCCcccccCCCcchHHHHHHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccc
Confidence 46799999999999999999999999999999999999999999999999998876 56789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcC-CCCeEEEECCCCcee
Q psy5094 84 DSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYT 162 (251)
Q Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~-~gp~Ly~id~~G~~~ 162 (251)
|+..|++.+|..++.|.++|++++|++.|++.|++..|.|||+.|. |||||++|.+|||+ .|.+||+.||+|++.
T Consensus 82 DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~----RPFGVSfLYaGwd~~~gyqLy~SdPSGny~ 157 (249)
T KOG0178|consen 82 DANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGK----RPFGVSFLYAGWDDRYGYQLYQSDPSGNYG 157 (249)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCc----CCCceeeeeeceecCcceEEEecCCCCCcc
Confidence 9999999999999999999999999999999999999999999988 99999999999995 579999999999999
Q ss_pred ecCEEEeCCCchhHHHHHHhhhcCCCC-HHHHHHHHHHHHHHHhhhc-CCCCcEEEEEEEcCCC---EEEcCHHHHHHHH
Q psy5094 163 QFDAKAIGSGSEGAQQSLQEVYHESMT-LKEAINHVLTILKQVMEEK-LNSTNVELCTVTADKM---YHLYSKEELEEEL 237 (251)
Q Consensus 163 ~~~~~a~G~g~~~~~~~Le~~~~~~~s-~~ea~~l~~~~l~~~~~~d-~~~~~i~i~~i~~~~~---~~~~~~~ei~~~~ 237 (251)
.|++.++|.++..++..|+..|+++.. +++|+.++++.|....+.. +....+|++.++++.. ++++.++||.+++
T Consensus 158 gWka~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev~kll 237 (249)
T KOG0178|consen 158 GWKATCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEVLKLL 237 (249)
T ss_pred ccceeeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHHHHHH
Confidence 999999999999999999999988655 9999999999999988876 5788899999999755 7899999999999
Q ss_pred HhhccC
Q psy5094 238 SKVSSI 243 (251)
Q Consensus 238 ~~~~~~ 243 (251)
+++...
T Consensus 238 ~k~~~~ 243 (249)
T KOG0178|consen 238 EKYHET 243 (249)
T ss_pred HHhhhh
Confidence 887643
No 19
>KOG0863|consensus
Probab=100.00 E-value=1.1e-53 Score=343.48 Aligned_cols=240 Identities=34% Similarity=0.587 Sum_probs=224.8
Q ss_pred CCcCCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccch
Q psy5094 3 LTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLI 82 (251)
Q Consensus 3 ~~~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~ 82 (251)
|+|..||..+|+|||+|||+|||||++|++.|++.||+|.++..||++-++..+.+ +..++||++|++|+++.++|+.
T Consensus 1 Mfrnqyd~d~t~wsPqGrl~QvEya~EavkqGsatVGLks~thaVLvAl~r~~seL--ss~QkKi~~iD~h~g~siAGLt 78 (264)
T KOG0863|consen 1 MFRNQYDNDVTTWSPQGRLHQVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQSEL--SSHQKKIFKIDDHIGISIAGLT 78 (264)
T ss_pred CCcccccCceeEECCcceehHHHHHHHHHhcccceEeecccceEEEeeeccchhHH--HHhhheeEecccccceEEeccC
Confidence 68999999999999999999999999999999999999999999999988877766 4577999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCcee
Q psy5094 83 ADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYT 162 (251)
Q Consensus 83 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~ 162 (251)
+|++.+.+++|.+|..+++.|++++|+..+...|++.+|..||+++. |||||.++++|+|+.||+||+++|+|++.
T Consensus 79 ~Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygr----RpYGVGllv~gYDe~G~hl~e~~Psg~v~ 154 (264)
T KOG0863|consen 79 ADARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGR----RPYGVGLLVAGYDESGPHLYEFCPSGNVF 154 (264)
T ss_pred cchHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCC----ccccceEEEEeecCCCceeEEEcCCccEE
Confidence 99999999999999999999999999999999999999999999987 99999999999999999999999999999
Q ss_pred ecCEEEeCCCchhHHHHHHhhhc--CCCCHHHHHHHHHHHHHHHhhh--cCCCCcEEEEEEEcCCCEEEcCHHHHHHHHH
Q psy5094 163 QFDAKAIGSGSEGAQQSLQEVYH--ESMTLKEAINHVLTILKQVMEE--KLNSTNVELCTVTADKMYHLYSKEELEEELS 238 (251)
Q Consensus 163 ~~~~~a~G~g~~~~~~~Le~~~~--~~~s~~ea~~l~~~~l~~~~~~--d~~~~~i~i~~i~~~~~~~~~~~~ei~~~~~ 238 (251)
++++.++|+.++.++++||++.. ++++.+|.+..++.||+..... +++..+++|+|+.++.+|.+++.+++.+++.
T Consensus 155 e~~g~sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~~~d~~~~~k~~~ 234 (264)
T KOG0863|consen 155 ECKGMSIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFTILDQKDVAKYVD 234 (264)
T ss_pred EEeeeecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceEeecHHHHHHHHH
Confidence 99999999999999999999876 4999999999999999998753 4688899999999999999999999999887
Q ss_pred hhccCCCCCC
Q psy5094 239 KVSSIHDPTR 248 (251)
Q Consensus 239 ~~~~~~~~~~ 248 (251)
..+...+|.+
T Consensus 235 ~~~~~~~p~~ 244 (264)
T KOG0863|consen 235 LFKKVDEPRE 244 (264)
T ss_pred HhhcCCCccc
Confidence 6665555543
No 20
>KOG0182|consensus
Probab=100.00 E-value=5.8e-51 Score=323.90 Aligned_cols=236 Identities=31% Similarity=0.604 Sum_probs=226.7
Q ss_pred CCcCCCCCCCceeCCCCcchhhhhHHHHHhc-CCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccc
Q psy5094 3 LTRSEYDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGL 81 (251)
Q Consensus 3 ~~~~~yd~~~~~fsp~G~l~q~eya~~a~~~-G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~ 81 (251)
++..+||+.+|+|||||||+|||||.||+++ |-|+||++++|++|+++.++++.+|+.++....+|+|..+|+|+++|.
T Consensus 4 gs~agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~tG~ 83 (246)
T KOG0182|consen 4 GSSAGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVITGM 83 (246)
T ss_pred CCcCCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEEecC
Confidence 4678999999999999999999999999997 889999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEc-CCCCeEEEECCCCc
Q psy5094 82 IADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLD-SKGPQLFHLDPSGT 160 (251)
Q Consensus 82 ~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d-~~gp~Ly~id~~G~ 160 (251)
.+|++..+.++|.++..+++.||.+||++.|+++++++-|.|+|+.-+ ||+||.+++.|+| +.||.+|.+||.|-
T Consensus 84 ~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~m----Rplg~~~~~i~~D~E~gP~vYk~DpAGy 159 (246)
T KOG0182|consen 84 IADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAM----RPLGVAATLIGVDEERGPSVYKTDPAGY 159 (246)
T ss_pred CcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhh----cccceeEEEEEeccccCcceEeecCccc
Confidence 999999999999999999999999999999999999999999999877 9999999999999 56899999999999
Q ss_pred eeecCEEEeCCCchhHHHHHHhhhcCC--CCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCC-EEEcCHHHHHHHH
Q psy5094 161 YTQFDAKAIGSGSEGAQQSLQEVYHES--MTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKM-YHLYSKEELEEEL 237 (251)
Q Consensus 161 ~~~~~~~a~G~g~~~~~~~Le~~~~~~--~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~-~~~~~~~ei~~~~ 237 (251)
+..+++.+.|-....+..+|||+++++ ++.++++++++.||..+...|...+.+||.+++++.+ |++|+.+||++.|
T Consensus 160 y~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~se~EVgvv~~~~p~f~~Ls~~eie~hL 239 (246)
T KOG0182|consen 160 YYGFKATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFKSSELEVGVVTVDNPEFRILSAEEIEEHL 239 (246)
T ss_pred cccceeeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccCCcceEEEEEEcCCcceeeccHHHHHHHH
Confidence 999999999999999999999999986 7799999999999999999899999999999999977 9999999999999
Q ss_pred Hhhcc
Q psy5094 238 SKVSS 242 (251)
Q Consensus 238 ~~~~~ 242 (251)
..|.+
T Consensus 240 ~~IAE 244 (246)
T KOG0182|consen 240 QAIAE 244 (246)
T ss_pred HHhhh
Confidence 88875
No 21
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=1.1e-45 Score=313.74 Aligned_cols=205 Identities=19% Similarity=0.279 Sum_probs=190.8
Q ss_pred HHhcCCcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCC
Q psy5094 30 AIKLGSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMD 108 (251)
Q Consensus 30 a~~~G~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 108 (251)
.+++|+|+|||+++||||||+|++.++ .++.+++.+||++|++|++++++|..+|++.+.+++|.+++.|++.++++++
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 467899999999999999999999997 5666889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhcCCC
Q psy5094 109 IESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESM 188 (251)
Q Consensus 109 ~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~ 188 (251)
++.++++|++++|.+.. .|+.+++|+||||++||+||++||.|++.+++++|+|+|+..++++||+.|+++|
T Consensus 115 v~~la~~ls~~l~~~R~--------~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dm 186 (247)
T PTZ00488 115 VAAASKILANIVWNYKG--------MGLSMGTMICGWDKKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDL 186 (247)
T ss_pred HHHHHHHHHHHHHhcCC--------CCeeEEEEEEEEeCCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCC
Confidence 99999999999976521 3555668999999889999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEcCHHHHHHHHHhhccC
Q psy5094 189 TLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLYSKEELEEELSKVSSI 243 (251)
Q Consensus 189 s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~~~~ei~~~~~~~~~~ 243 (251)
|.+||++++++||+.+.+||. ++++++|++|+++ +++.++++||+++++.+++.
T Consensus 187 s~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~-g~~~l~~~ei~~~l~~~~~~ 241 (247)
T PTZ00488 187 NDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKD-GWKKISADDCFDLHQKYAAE 241 (247)
T ss_pred CHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCC-ccEECCHHHHHHHHHHHhhh
Confidence 999999999999999999985 7889999999987 68999999999999988754
No 22
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=2.4e-45 Score=308.29 Aligned_cols=211 Identities=21% Similarity=0.343 Sum_probs=187.8
Q ss_pred eCCCCcch-hhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHH
Q psy5094 15 FSPEGRLF-QVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRAR 93 (251)
Q Consensus 15 fsp~G~l~-q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~ 93 (251)
.+|+.-+. .-|||++|+++|+|+|||+++||||||+|++ .++.+||++|+||++|+++|+.+|++.+++.++
T Consensus 7 ~~~~~~~~~~~EYA~kav~~g~T~VGIk~kdgVVLaaek~-------~~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r 79 (228)
T TIGR03691 7 VSPEQIMRDRAELARKGIARGRSVVVLTYADGILFVAENP-------SRSLHKISELYDRIGFAAVGKYNEFENLRRAGI 79 (228)
T ss_pred cCHHHHHhhHHHHHHHHHHcCCcEEEEEeCCeEEEEEecC-------CCCcCcEEEecCCEEEEEcCCHHHHHHHHHHHH
Confidence 46666666 4799999999999999999999999999997 346789999999999999999999999999999
Q ss_pred HHHHHHHhhhC-CCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEc--CCCCeEEEECCCCceeecC-EEEe
Q psy5094 94 VECANHWFTYD-EKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLD--SKGPQLFHLDPSGTYTQFD-AKAI 169 (251)
Q Consensus 94 ~~~~~~~~~~~-~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d--~~gp~Ly~id~~G~~~~~~-~~a~ 169 (251)
.+++.|++.++ .+++++.+++.+++.+..++ ++. .|||+|++|++||| +.||+||++||+|++.+++ ++|+
T Consensus 80 ~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~-~~~----~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~ai 154 (228)
T TIGR03691 80 RYADMRGYSYDRRDVTGRGLANAYAQTLGTIF-TEQ----QKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVM 154 (228)
T ss_pred HHHHHHhhhcCCCCccHHHHHHHHHhhccccc-ccc----cCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEE
Confidence 99999999998 68999999887777665444 232 39999999999998 4689999999999999866 8999
Q ss_pred CCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhh--hc-CCCCcEEEEEEEcCC---CEEEcCHHHHHHHH
Q psy5094 170 GSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVME--EK-LNSTNVELCTVTADK---MYHLYSKEELEEEL 237 (251)
Q Consensus 170 G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~--~d-~~~~~i~i~~i~~~~---~~~~~~~~ei~~~~ 237 (251)
|+|++.++++||++|+++||++||++++++||+.+.+ ++ +++.++||+++++++ +|++++++||++++
T Consensus 155 G~gs~~a~~~Lek~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 155 GGTTEPIATALKESYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALERLL 228 (228)
T ss_pred CCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHhhC
Confidence 9999999999999999999999999999999999964 33 688899999999754 49999999998764
No 23
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=5.4e-45 Score=305.51 Aligned_cols=204 Identities=20% Similarity=0.264 Sum_probs=187.3
Q ss_pred cCCcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHH
Q psy5094 33 LGSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIES 111 (251)
Q Consensus 33 ~G~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 111 (251)
+|+|+|||+++||||||+|++.++ +++.+++.+||++|++|++|+++|..+|++.+.+++|.+++.|++.++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 489999999999999999999998 6777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccccccccCCcceeeEEEEEcC--CCCeEEEECCCC-ceeecCEEEeCCCchhHHHHHHhhhcCCC
Q psy5094 112 VAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS--KGPQLFHLDPSG-TYTQFDAKAIGSGSEGAQQSLQEVYHESM 188 (251)
Q Consensus 112 l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~--~gp~Ly~id~~G-~~~~~~~~a~G~g~~~~~~~Le~~~~~~~ 188 (251)
+++.|++++|.++.. .+ |||+|++||||||+ ++|+||++||+| ++..++++|+|+|+..++++||+.|+++|
T Consensus 81 la~~ls~~~~~~~~~-~~----rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~m 155 (219)
T TIGR03690 81 KANRLAAMVRGNLPA-AM----QGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDL 155 (219)
T ss_pred HHHHHHHHHHhhhhh-cc----CCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCc
Confidence 999999999887642 23 99999999999995 579999999999 57778999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhcC-CCC--c-----EEEEEEEcCCCEEEcCHHHHHHHHHhhcc
Q psy5094 189 TLKEAINHVLTILKQVMEEKL-NST--N-----VELCTVTADKMYHLYSKEELEEELSKVSS 242 (251)
Q Consensus 189 s~~ea~~l~~~~l~~~~~~d~-~~~--~-----i~i~~i~~~~~~~~~~~~ei~~~~~~~~~ 242 (251)
|.+||++++++||+.+.++|. +++ + ++|++|+++ ++++++++||+++++.+.+
T Consensus 156 s~eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~-g~~~l~~~ei~~~~~~~~~ 216 (219)
T TIGR03690 156 DEDDALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITAD-GARRVPESELEELARAIVE 216 (219)
T ss_pred CHHHHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccC-ceEEcCHHHHHHHHHHHHh
Confidence 999999999999999999886 333 2 399999866 7999999999999987764
No 24
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.1e-45 Score=297.82 Aligned_cols=185 Identities=23% Similarity=0.350 Sum_probs=175.3
Q ss_pred CcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVA 113 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 113 (251)
+|+|||+++||||||+|++.++ .++.+++.+||++|++|++|+++|..+|++.+++++|.+++.|++.+++++|++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999999 466678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhcCCCCHHHH
Q psy5094 114 QAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEA 193 (251)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 193 (251)
+++++++|.+++ .||+|++||||||++||+||++||.|++.+++++|+|+|+.+++++||+.|+++|+.+||
T Consensus 81 ~~ls~~l~~~~~--------~~~~v~~li~G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea 152 (188)
T cd03761 81 KLLSNMLYQYKG--------MGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEA 152 (188)
T ss_pred HHHHHHHHhcCC--------CCeEEEEEEEEEeCCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHH
Confidence 999999998876 799999999999998999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEc
Q psy5094 194 INHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLY 228 (251)
Q Consensus 194 ~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~ 228 (251)
++++.+||+.+.++|. ++++++|++|+++ +++++
T Consensus 153 ~~l~~~~l~~~~~rd~~sg~~~~v~ii~~~-g~~~~ 187 (188)
T cd03761 153 YDLARRAIYHATHRDAYSGGNVNLYHVRED-GWRKI 187 (188)
T ss_pred HHHHHHHHHHHHHhcccCCCCeEEEEEcCC-ceEEc
Confidence 9999999999999886 7789999999988 54543
No 25
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.6e-44 Score=295.12 Aligned_cols=187 Identities=24% Similarity=0.267 Sum_probs=175.1
Q ss_pred CcEEEEEeCCeEEEEEeccCCCc-ccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITSV-LMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVA 113 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 113 (251)
+|+|||+++||||||+|++.+++ ++.+++.+||++|+++++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999884 57788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccccCCcceeeEEEEEcC-CCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhcCCCCHHH
Q psy5094 114 QAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKE 192 (251)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~-~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~e 192 (251)
+++++++|.|++. + |||++++||+|||+ .||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.+|
T Consensus 82 ~~l~~~~~~~~~~-----~-rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~ee 155 (193)
T cd03758 82 NFTRRELAESLRS-----R-TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEE 155 (193)
T ss_pred HHHHHHHHHHhhc-----C-CCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHH
Confidence 9999999988763 1 79999999999995 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEc
Q psy5094 193 AINHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLY 228 (251)
Q Consensus 193 a~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~ 228 (251)
|++++.+|++.+.+||. ++++++|++|+++ +++++
T Consensus 156 ai~l~~~a~~~~~~rd~~~~~~i~i~ii~~~-g~~~~ 191 (193)
T cd03758 156 ALELMKKCIKELKKRFIINLPNFTVKVVDKD-GIRDL 191 (193)
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEEEcCC-CeEeC
Confidence 99999999999999886 7789999999988 55543
No 26
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.6e-44 Score=296.14 Aligned_cols=189 Identities=19% Similarity=0.222 Sum_probs=175.0
Q ss_pred cCCcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHH-HHHhhhCCCCCHH
Q psy5094 33 LGSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECA-NHWFTYDEKMDIE 110 (251)
Q Consensus 33 ~G~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~i~~~ 110 (251)
+|+|+|||+++||||||+|++.++ .++.+++.+||++|+++++|+++|..+|++.+++++|.+++ .+++.++.+++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 589999999999999999999996 67778889999999999999999999999999999999986 5778899999999
Q ss_pred HHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcC-CCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhcC--C
Q psy5094 111 SVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHE--S 187 (251)
Q Consensus 111 ~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~-~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~ 187 (251)
.+++++++++ |+++++. |||+|++|+||||+ +||+||.+||.|++.+++++|+|+|+.+++++||+.|++ +
T Consensus 81 ~la~~i~~~~--y~~~~~~----rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ 154 (197)
T cd03760 81 EIHSYLTRVL--YNRRSKM----NPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPD 154 (197)
T ss_pred HHHHHHHHHH--HHHhhcC----CCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCC
Confidence 9999999986 6676544 99999999999996 789999999999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEc
Q psy5094 188 MTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLY 228 (251)
Q Consensus 188 ~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~ 228 (251)
||.+||++++++||+.+.++|. ++++++|++|+++ ++++.
T Consensus 155 ms~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~-g~~~~ 195 (197)
T cd03760 155 LTEEEARALIEECMKVLYYRDARSINKYQIAVVTKE-GVEIE 195 (197)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCCceEEEEECCC-CEEeC
Confidence 9999999999999999999985 7889999999998 55544
No 27
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.1e-44 Score=293.52 Aligned_cols=184 Identities=17% Similarity=0.253 Sum_probs=171.3
Q ss_pred cCCcEEEEEeCCeEEEEEeccCCCcccC-CCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHH
Q psy5094 33 LGSTAIGISTSEGVVLAAEKRITSVLME-PSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIES 111 (251)
Q Consensus 33 ~G~tvvgi~~~~gVvla~d~~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 111 (251)
+|+|+|||+++||||||+|++.+++++. .++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++++++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 6999999999999999999999987755 567899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccccccccCCcceeeEEEEEcC-CCCeEEEECCCCceeecC-EEEeCCCchhHHHHHHhhhcCCCC
Q psy5094 112 VAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQFD-AKAIGSGSEGAQQSLQEVYHESMT 189 (251)
Q Consensus 112 l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~-~gp~Ly~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s 189 (251)
++++|+++++ +++ .+||+|++||||||+ +||+||++||.|++..+. ++|+|+|+..++++||+.|+++|+
T Consensus 82 la~~l~~~ly--~~r------~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s 153 (195)
T cd03759 82 FSSLISSLLY--EKR------FGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDME 153 (195)
T ss_pred HHHHHHHHHH--Hhc------CCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCC
Confidence 9999999984 342 289999999999995 569999999999998877 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCC
Q psy5094 190 LKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKM 224 (251)
Q Consensus 190 ~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~ 224 (251)
.+||++++++||+.+.++|. ++++++|++|++++.
T Consensus 154 ~~ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~ 189 (195)
T cd03759 154 PDELFETISQALLSAVDRDALSGWGAVVYIITKDKV 189 (195)
T ss_pred HHHHHHHHHHHHHHHHhhCcccCCceEEEEEcCCcE
Confidence 99999999999999999985 778999999998854
No 28
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.8e-43 Score=289.26 Aligned_cols=182 Identities=30% Similarity=0.487 Sum_probs=173.3
Q ss_pred CCcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHH
Q psy5094 34 GSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESV 112 (251)
Q Consensus 34 G~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 112 (251)
|+|+|||+++||||||+|++.++ +++..++.+||++|+++++|+++|..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 79999999999999999999986 56778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhcCCCCHHH
Q psy5094 113 AQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKE 192 (251)
Q Consensus 113 ~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~e 192 (251)
+++|++++|.+. .|||+|++|+||||++||+||.+||+|++.+++++++|+++.+++++||+.|+++||++|
T Consensus 81 a~~l~~~~~~~~--------~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~e 152 (185)
T TIGR03634 81 ATLLSNILNSNR--------FFPFIVQLLVGGVDEEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEE 152 (185)
T ss_pred HHHHHHHHHhcC--------CCCeEEEEEEEEEeCCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHH
Confidence 999999998762 299999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCC
Q psy5094 193 AINHVLTILKQVMEEKL-NSTNVELCTVTADK 223 (251)
Q Consensus 193 a~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~ 223 (251)
|++++++||+.+.+++. ++++++|++|+++|
T Consensus 153 a~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g 184 (185)
T TIGR03634 153 AKKLAVRAIKSAIERDVASGNGIDVAVITKDG 184 (185)
T ss_pred HHHHHHHHHHHHHHhcccCCCCEEEEEEcCCC
Confidence 99999999999999886 67889999999885
No 29
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.4e-43 Score=286.29 Aligned_cols=185 Identities=30% Similarity=0.473 Sum_probs=175.0
Q ss_pred CcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVA 113 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 113 (251)
+|+|||+++||||||+|++.++ .++.+++.+||++|+++++++++|..+|++.+.+.++.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999998 566678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhcCCCCHHHH
Q psy5094 114 QAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEA 193 (251)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 193 (251)
+++++++|.+. .|||+|++|+||+|++||+||.+||+|++.+++++|+|+|+.+++++|++.|+++|+++||
T Consensus 81 ~~i~~~~~~~~--------~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea 152 (188)
T cd03764 81 TLLSNILNSSK--------YFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEA 152 (188)
T ss_pred HHHHHHHHhcC--------CCCcEEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHH
Confidence 99999998753 2999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEc
Q psy5094 194 INHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLY 228 (251)
Q Consensus 194 ~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~ 228 (251)
++++++||+.+.++|. ++++++|++|+++ +++++
T Consensus 153 ~~l~~~~l~~~~~rd~~~~~~i~i~iv~~~-g~~~~ 187 (188)
T cd03764 153 KKLAIRAIKSAIERDSASGDGIDVVVITKD-GYKEL 187 (188)
T ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEECCC-CeEeC
Confidence 9999999999999986 7788999999988 57765
No 30
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.5e-43 Score=290.59 Aligned_cols=186 Identities=23% Similarity=0.324 Sum_probs=173.2
Q ss_pred HhcCCcEEEEEeCCeEEEEEeccCCCcccC-CCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCH
Q psy5094 31 IKLGSTAIGISTSEGVVLAAEKRITSVLME-PSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDI 109 (251)
Q Consensus 31 ~~~G~tvvgi~~~~gVvla~d~~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 109 (251)
+++|+|+|||+++||||||+|++.+++++. .++.+||++|+++++|+++|..+|++.+.+.++.+++.|++.+++++++
T Consensus 5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~ 84 (212)
T cd03757 5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMST 84 (212)
T ss_pred cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCH
Confidence 578999999999999999999999997644 7889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcC-CCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhc---
Q psy5094 110 ESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYH--- 185 (251)
Q Consensus 110 ~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~-~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~--- 185 (251)
+.++++++++++. ++ .+||++++||||||+ ++|+||++||.|++.+++++|+|+|+.+++++||+.|+
T Consensus 85 ~~la~~ls~~ly~--~R------~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~ 156 (212)
T cd03757 85 EAIAQLLSTILYS--RR------FFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKN 156 (212)
T ss_pred HHHHHHHHHHHHh--hc------CCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhc
Confidence 9999999999954 32 279999999999995 46999999999999999999999999999999999985
Q ss_pred ------CCCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCC
Q psy5094 186 ------ESMTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKM 224 (251)
Q Consensus 186 ------~~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~ 224 (251)
++||++||++++++||+.+.++|. ++++++|++|+++|.
T Consensus 157 ~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~ 202 (212)
T cd03757 157 QNNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGI 202 (212)
T ss_pred cCcCCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCE
Confidence 899999999999999999999985 778999999999854
No 31
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-42 Score=283.54 Aligned_cols=185 Identities=26% Similarity=0.427 Sum_probs=173.8
Q ss_pred CcEEEEEeCCeEEEEEeccCCCc-ccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITSV-LMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVA 113 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 113 (251)
+|+|||+++||||||+|+|.+++ ++..++.+||++|+++++|+++|..+|++.+.+.++.+++.|++.++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999995 56678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhcCCCCHHHH
Q psy5094 114 QAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEA 193 (251)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 193 (251)
+++++.+|.|. .||+|++|+||||++||+||.+||.|++.+++++|+|+++..++++|++.|+++||++||
T Consensus 81 ~~l~~~l~~~~---------~p~~v~~ivaG~d~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea 151 (189)
T cd03763 81 TMLKQHLFRYQ---------GHIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEA 151 (189)
T ss_pred HHHHHHHHHcC---------CccceeEEEEeEcCCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHH
Confidence 99999998652 599999999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEcC
Q psy5094 194 INHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLYS 229 (251)
Q Consensus 194 ~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~~ 229 (251)
++++++||+.+.++|. ++++++|++|+++ +++...
T Consensus 152 ~~l~~~~l~~~~~rd~~~~~~~~v~ii~~~-g~~~~~ 187 (189)
T cd03763 152 KKLVCEAIEAGIFNDLGSGSNVDLCVITKD-GVEYLR 187 (189)
T ss_pred HHHHHHHHHHHHHhcCcCCCceEEEEEcCC-cEEEec
Confidence 9999999999999996 7788999999998 555544
No 32
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-42 Score=291.95 Aligned_cols=189 Identities=18% Similarity=0.266 Sum_probs=169.4
Q ss_pred CcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEc----CcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCC-CCCH
Q psy5094 35 STAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEID----KHIGCAASGLIADSRILTDRARVECANHWFTYDE-KMDI 109 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~i~~ 109 (251)
+-+|||+++||||||+|+|.+++++..++.+||++|+ +|++|+.||..+|++.+++++|.+++.|++.+++ ++|+
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v 80 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTM 80 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCH
Confidence 4589999999999999999988876656789999998 8999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHhcCcccccc--ccCCcceeeEEEEEc-CCCCeEEEECCCCceeec----CEEEeCCCchhHHHHHHh
Q psy5094 110 ESVAQAVSNLAIQFGDSDEESA--MSRPFGVAMLFAGLD-SKGPQLFHLDPSGTYTQF----DAKAIGSGSEGAQQSLQE 182 (251)
Q Consensus 110 ~~l~~~ls~~~~~~~~~~~~~~--~~rP~~~~~lv~G~d-~~gp~Ly~id~~G~~~~~----~~~a~G~g~~~~~~~Le~ 182 (251)
+.+++.++++++++.++.+... +.|||+|++|||||| +.||+||++||+|++.++ +++|+|. +.+++++||+
T Consensus 81 ~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek 159 (236)
T cd03765 81 FDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDR 159 (236)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHH
Confidence 9999999998765433332111 248999999999998 578999999999999998 5689996 7999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCC
Q psy5094 183 VYHESMTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKM 224 (251)
Q Consensus 183 ~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~ 224 (251)
.|+++||++||++++++||..+.++|. ++++|+|++|+++|.
T Consensus 160 ~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~ 202 (236)
T cd03765 160 VITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSL 202 (236)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCe
Confidence 999999999999999999999999985 778899999999844
No 33
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.2e-42 Score=280.11 Aligned_cols=181 Identities=24% Similarity=0.347 Sum_probs=171.1
Q ss_pred CcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVA 113 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 113 (251)
+|+|||+++||||||+|++.++ .++.+++.+||++|+++++|+++|..+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 5899999999999999999999 566678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccccCCcceeeEEEEEcC-CCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhcCCCCHHH
Q psy5094 114 QAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKE 192 (251)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~-~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~e 192 (251)
+++++++|+++ |||++++||||+|+ +||+||.+||.|++.+++++++|+|+.+++++|++.|+++|+++|
T Consensus 81 ~~l~~~~~~~~---------~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~e 151 (188)
T cd03762 81 SLFKNLCYNYK---------EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEE 151 (188)
T ss_pred HHHHHHHHhcc---------ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHH
Confidence 99999997663 78999999999995 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCC
Q psy5094 193 AINHVLTILKQVMEEKL-NSTNVELCTVTADKM 224 (251)
Q Consensus 193 a~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~ 224 (251)
|++++++||+.+.++|. ++++++|++|++++.
T Consensus 152 a~~l~~~al~~~~~rd~~~~~~~~i~~i~~~g~ 184 (188)
T cd03762 152 CIKFVKNALSLAMSRDGSSGGVIRLVIITKDGV 184 (188)
T ss_pred HHHHHHHHHHHHHHhccccCCCEEEEEECCCCE
Confidence 99999999999999986 778999999998844
No 34
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8e-41 Score=274.34 Aligned_cols=181 Identities=28% Similarity=0.432 Sum_probs=172.3
Q ss_pred CcEEEEEeCCeEEEEEeccCCCcccC-CCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITSVLME-PSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVA 113 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 113 (251)
+|+|||+++||||||+|++.++++.. .++.+||++|+++++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999997655 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccccCCcceeeEEEEEcC-CCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhcCCCCHHH
Q psy5094 114 QAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKE 192 (251)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~-~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~e 192 (251)
+++++++|.+++ |||++++||||+|+ ++|+||.+||.|++.+++++++|+++++++++|++.|+++|+++|
T Consensus 81 ~~l~~~~~~~~~--------~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~e 152 (189)
T cd01912 81 NLLSNILYSYRG--------FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEE 152 (189)
T ss_pred HHHHHHHHhcCC--------CCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHH
Confidence 999999987765 79999999999996 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCC
Q psy5094 193 AINHVLTILKQVMEEKL-NSTNVELCTVTADK 223 (251)
Q Consensus 193 a~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~ 223 (251)
|++++.+||+.+.+++. ++++++|++|++++
T Consensus 153 a~~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g 184 (189)
T cd01912 153 AVELVKKAIDSAIERDLSSGGGVDVAVITKDG 184 (189)
T ss_pred HHHHHHHHHHHHHHhcCccCCcEEEEEECCCC
Confidence 99999999999999886 67789999999984
No 35
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=5.1e-41 Score=275.42 Aligned_cols=185 Identities=37% Similarity=0.642 Sum_probs=172.6
Q ss_pred HhcCCcEEEEEeCCeEEEEEeccCCC-ccc-CCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCC
Q psy5094 31 IKLGSTAIGISTSEGVVLAAEKRITS-VLM-EPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMD 108 (251)
Q Consensus 31 ~~~G~tvvgi~~~~gVvla~d~~~~~-~~~-~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 108 (251)
+++|+|+|||+++|||+||+|++.+. +.+ .++..+||++|+++++++++|..+|++.+.++++.+++.|++.++.+++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 57999999999999999999999996 333 4445799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCC-CeEEEECCCCceeec-CEEEeCCCchhHHHHHHhhhcC
Q psy5094 109 IESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKG-PQLFHLDPSGTYTQF-DAKAIGSGSEGAQQSLQEVYHE 186 (251)
Q Consensus 109 ~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~g-p~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~ 186 (251)
++.+++.++++++.++++... ||+++++|+||||+++ |+||.+||+|++.++ +++|+|+|+..++++|++.|++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~----~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~ 156 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGR----RPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKP 156 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT----STTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTT
T ss_pred chhhhhhhHHHHhhhcccccc----cCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccC
Confidence 999999999999999887654 9999999999999766 999999999999999 7999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEE
Q psy5094 187 SMTLKEAINHVLTILKQVMEEKL-NSTNVELCTV 219 (251)
Q Consensus 187 ~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i 219 (251)
+|+++||++++++||+.+.++|. ++++++|++|
T Consensus 157 ~~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 157 DLSLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 99999999999999999999885 7889999986
No 36
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=7.8e-40 Score=266.67 Aligned_cols=179 Identities=44% Similarity=0.740 Sum_probs=170.1
Q ss_pred CcEEEEEeCCeEEEEEeccCCCcccC-CCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITSVLME-PSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVA 113 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 113 (251)
+|+|||+++||||||+|++.++++.. .++.+||++|+++++|+++|..+|++.+.+.++.++..|++.++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999986654 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccccCCcceeeEEEEEcC-CCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhcCCCCHHH
Q psy5094 114 QAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKE 192 (251)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~-~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~e 192 (251)
+.+++++|+++++ . |||++++|+||+|+ .||+||.+||.|++.+++++++|+++..++++|++.|+++||.+|
T Consensus 81 ~~l~~~~~~~~~~--~----~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~e 154 (182)
T cd01906 81 KLLANLLYEYTQS--L----RPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEE 154 (182)
T ss_pred HHHHHHHHHhCCC--c----cChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHH
Confidence 9999999999885 3 99999999999996 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcC-CCCcEEEEEE
Q psy5094 193 AINHVLTILKQVMEEKL-NSTNVELCTV 219 (251)
Q Consensus 193 a~~l~~~~l~~~~~~d~-~~~~i~i~~i 219 (251)
|++++++||+.+.+++. ++.+++|++|
T Consensus 155 a~~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 155 AIELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 99999999999999987 6778999875
No 37
>KOG0175|consensus
Probab=100.00 E-value=2.3e-37 Score=252.78 Aligned_cols=209 Identities=22% Similarity=0.339 Sum_probs=195.4
Q ss_pred HhcCCcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCH
Q psy5094 31 IKLGSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDI 109 (251)
Q Consensus 31 ~~~G~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 109 (251)
..+|+|++|+++++|||+|+|+|.+. +++..+..+||.+|+++..-..+|-++|++.+-+.+.++|++|++++++.|||
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV 147 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV 147 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence 46999999999999999999999999 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhcCCCC
Q psy5094 110 ESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMT 189 (251)
Q Consensus 110 ~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s 189 (251)
...++.|++++++|.. -.+.+.++|+|||+.||.||.+|..|+..+.+-+++|+|+.+|+++|+..|+++||
T Consensus 148 saASKllsN~~y~YkG--------mGLsmGtMi~G~Dk~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls 219 (285)
T KOG0175|consen 148 SAASKLLSNMVYQYKG--------MGLSMGTMIAGWDKKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLS 219 (285)
T ss_pred HHHHHHHHHHHhhccC--------cchhheeeEeeccCCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCC
Confidence 9999999999988865 34778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEcCHHHHHHHHHhhccCCCCCC
Q psy5094 190 LKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLYSKEELEEELSKVSSIHDPTR 248 (251)
Q Consensus 190 ~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~~~~ei~~~~~~~~~~~~~~~ 248 (251)
.+||.+|+++++..+.-||. +++-+.++.|+++ +|..+...++.++...+-+..+|+.
T Consensus 220 ~eEA~~L~rrAI~hAThRDaySGG~vnlyHv~ed-GW~~v~~~Dv~~L~~~~~e~~~~~~ 278 (285)
T KOG0175|consen 220 DEEAYDLARRAIYHATHRDAYSGGVVNLYHVKED-GWVKVSNTDVSELHYHYYEVAPPEA 278 (285)
T ss_pred HHHHHHHHHHHHHHHHhcccccCceEEEEEECCc-cceecCCccHHHHHHHHHHhcCccc
Confidence 99999999999999998886 7888999999998 8999999999999666666666553
No 38
>KOG0177|consensus
Probab=100.00 E-value=5.2e-36 Score=234.90 Aligned_cols=187 Identities=21% Similarity=0.245 Sum_probs=174.1
Q ss_pred cEEEEEeCCeEEEEEeccCCCcc-cCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHH
Q psy5094 36 TAIGISTSEGVVLAAEKRITSVL-MEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQ 114 (251)
Q Consensus 36 tvvgi~~~~gVvla~d~~~~~~~-~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~ 114 (251)
+++||++.|+|++|+||...+++ +..++.+|+..|++++.|.++|..+|+.++.+++.+.++.|+.++|.++|++.+++
T Consensus 3 ~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aah 82 (200)
T KOG0177|consen 3 TLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAH 82 (200)
T ss_pred eEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHH
Confidence 68999999999999999988865 55889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccccccCCcceeeEEEEEc-CCCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhcCCCCHHHH
Q psy5094 115 AVSNLAIQFGDSDEESAMSRPFGVAMLFAGLD-SKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEA 193 (251)
Q Consensus 115 ~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d-~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 193 (251)
++.+.+.++.++ .+||.|++|+||+| +.||.||++|..|+..+.++++.|.++.++.++|+++|+|+||.+||
T Consensus 83 FtR~~La~~LRs------r~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea 156 (200)
T KOG0177|consen 83 FTRRELAESLRS------RTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEA 156 (200)
T ss_pred HHHHHHHHHHhc------CCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHH
Confidence 999999887663 27999999999999 55799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEcC
Q psy5094 194 INHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLYS 229 (251)
Q Consensus 194 ~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~~ 229 (251)
+++..+|+.++.+|-. +-.++.+.+|+|+ |.+.++
T Consensus 157 ~~lmkKCv~El~kRlvin~~~f~v~IVdkd-Gir~~~ 192 (200)
T KOG0177|consen 157 LDLMKKCVLELKKRLVINLPGFIVKIVDKD-GIRKLD 192 (200)
T ss_pred HHHHHHHHHHHHHhcccCCCCcEEEEEcCC-Cceecc
Confidence 9999999999999975 8889999999999 555443
No 39
>KOG0179|consensus
Probab=100.00 E-value=2.2e-35 Score=234.64 Aligned_cols=189 Identities=24% Similarity=0.364 Sum_probs=174.0
Q ss_pred HHHhcCCcEEEEEeCCeEEEEEeccCCCcc-cCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCC
Q psy5094 29 EAIKLGSTAIGISTSEGVVLAAEKRITSVL-MEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKM 107 (251)
Q Consensus 29 ~a~~~G~tvvgi~~~~gVvla~d~~~~~~~-~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 107 (251)
.-..+|+|+|||++.|++|+|+|||.++++ +.++...||++++|+++++.+|+.+|+..|...++...++|+..++..|
T Consensus 24 PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~m 103 (235)
T KOG0179|consen 24 PYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKM 103 (235)
T ss_pred ccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccc
Confidence 346899999999999999999999999976 4478999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCC-CeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhc-
Q psy5094 108 DIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKG-PQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYH- 185 (251)
Q Consensus 108 ~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~g-p~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~- 185 (251)
++..+|+.|+..++ .+ |+.||.+..+++|+|+.| +.+|+.||.|++.+..+.|.|+++..++++|+....
T Consensus 104 s~~s~A~lls~~LY--~k------RFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~ 175 (235)
T KOG0179|consen 104 SIHSAAQLLSTILY--SK------RFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGH 175 (235)
T ss_pred cHHHHHHHHHHHHh--hc------ccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccC
Confidence 99999999999995 33 458999999999999765 999999999999999999999999999999997643
Q ss_pred ----------CCCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCE
Q psy5094 186 ----------ESMTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKMY 225 (251)
Q Consensus 186 ----------~~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~ 225 (251)
..+|+|+|+.++..+|..+.+||+ .++.++|+++++++..
T Consensus 176 kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~ 226 (235)
T KOG0179|consen 176 KNQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVE 226 (235)
T ss_pred cCcccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEE
Confidence 378999999999999999999999 5678999999998653
No 40
>KOG0174|consensus
Probab=100.00 E-value=9.7e-36 Score=234.05 Aligned_cols=201 Identities=19% Similarity=0.295 Sum_probs=184.2
Q ss_pred HHhcCCcEEEEEeCCeEEEEEeccCCCc-ccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCC
Q psy5094 30 AIKLGSTAIGISTSEGVVLAAEKRITSV-LMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMD 108 (251)
Q Consensus 30 a~~~G~tvvgi~~~~gVvla~d~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 108 (251)
.+..|+|++|+++++||||++|+|.+.+ ++.++-.+|+.+|.|+|+||.||.++|.|.+.+.++.+...|...++.+++
T Consensus 15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~ 94 (224)
T KOG0174|consen 15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPL 94 (224)
T ss_pred ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence 4689999999999999999999999994 677999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcC-CCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhcCC
Q psy5094 109 IESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHES 187 (251)
Q Consensus 109 ~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~-~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ 187 (251)
+...++.+++++|+|.. -+.+.+||||||+ .|.++|.+---|...+.+++.-|+|+.+++++++..|+++
T Consensus 95 v~~aA~l~r~~~Y~~re---------~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~n 165 (224)
T KOG0174|consen 95 VHTAASLFREICYNYRE---------MLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPN 165 (224)
T ss_pred HHHHHHHHHHHHHhCHH---------hhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCC
Confidence 99999999999987753 3779999999994 5799999988888889999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCC-EEEcCHHHHHHHHHh
Q psy5094 188 MTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKM-YHLYSKEELEEELSK 239 (251)
Q Consensus 188 ~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~-~~~~~~~ei~~~~~~ 239 (251)
||+||++.++++|+..++++|- +++.|.+.+|+++|. .+++.++++..+..+
T Consensus 166 Mt~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~~v~ 219 (224)
T KOG0174|consen 166 MTLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQFAVE 219 (224)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCcccccccc
Confidence 9999999999999999999997 556799999999977 557888887665543
No 41
>KOG0173|consensus
Probab=100.00 E-value=2.9e-35 Score=239.93 Aligned_cols=188 Identities=27% Similarity=0.457 Sum_probs=176.9
Q ss_pred HHHHHhcCCcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCC
Q psy5094 27 AIEAIKLGSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDE 105 (251)
Q Consensus 27 a~~a~~~G~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 105 (251)
+.++.++|+|+||+.++||||+++|+|.+. +++..++..||..|.++|+||.+|..+|...+.+.+..+.++|++..++
T Consensus 30 ~p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R 109 (271)
T KOG0173|consen 30 APKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGR 109 (271)
T ss_pred CCcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCC
Confidence 457788999999999999999999999999 5677899999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhc
Q psy5094 106 KMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYH 185 (251)
Q Consensus 106 ~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~ 185 (251)
++++-...++|.+.+.+|+. -.++.+|++|+|..|||||.+-|.|+....+|.++|+|+..+.++||.+|+
T Consensus 110 ~~rVv~A~~mlkQ~LFrYqG---------~IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k 180 (271)
T KOG0173|consen 110 KPRVVTALRMLKQHLFRYQG---------HIGAALILGGVDPTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWK 180 (271)
T ss_pred CCceeeHHHHHHHHHHHhcC---------cccceeEEccccCCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcC
Confidence 99999999999999977764 367899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCC
Q psy5094 186 ESMTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADK 223 (251)
Q Consensus 186 ~~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~ 223 (251)
++|+.|||++|+.+|+...+-.|+ +++|+++|+|++.+
T Consensus 181 ~dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~ 219 (271)
T KOG0173|consen 181 PDLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKG 219 (271)
T ss_pred cccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCC
Confidence 999999999999999999988887 78899999999653
No 42
>KOG0185|consensus
Probab=100.00 E-value=6.7e-34 Score=229.78 Aligned_cols=228 Identities=17% Similarity=0.263 Sum_probs=197.5
Q ss_pred CCceeCCCCcchh------hhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcCcEEEEeccchh
Q psy5094 11 GVNTFSPEGRLFQ------VEYAIEAIKLGSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIA 83 (251)
Q Consensus 11 ~~~~fsp~G~l~q------~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~ 83 (251)
.+++|.|.|...- +..-+.+.-+|+++||+|++|||+||+|+..++ ++...++.++|++++||+.+|++|..+
T Consensus 12 a~~~f~~~~~~m~~a~~~~~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdis 91 (256)
T KOG0185|consen 12 APGTFYPSGSLMENAGDYPIQRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDIS 91 (256)
T ss_pred CCCcCcCccchhhhccCCCcccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHH
Confidence 3567888865421 222345567899999999999999999999999 577789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCC-CeEEEECCCCce
Q psy5094 84 DSRILTDRARVECAN-HWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKG-PQLFHLDPSGTY 161 (251)
Q Consensus 84 D~~~l~~~~~~~~~~-~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~g-p~Ly~id~~G~~ 161 (251)
|+|.+.+.+.+.... ..+..++.+.++.++++|++.+ |.+++.+ .|++..++|||+|++| |.|..+|-.|..
T Consensus 92 D~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvl--Y~rRsKm----nPlwntlvVgGv~~~g~~~lg~V~~~G~~ 165 (256)
T KOG0185|consen 92 DFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVL--YARRSKM----NPLWNTLVVGGVDNTGEPFLGYVDLLGVA 165 (256)
T ss_pred HHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHH--HHhhhcc----CchhhheeEeeecCCCCeeEEEEeecccc
Confidence 999999999877655 3366679999999999999999 5576666 8999999999999854 999999999999
Q ss_pred eecCEEEeCCCchhHHHHHHhhhc---CCCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEcCHHHHHHHH
Q psy5094 162 TQFDAKAIGSGSEGAQQSLQEVYH---ESMTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLYSKEELEEEL 237 (251)
Q Consensus 162 ~~~~~~a~G~g~~~~~~~Le~~~~---~~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~~~~ei~~~~ 237 (251)
.+.+..|+|.|...+.++|++.|. ++++.+||.+++.+|++.+..||. +.+++++++|+++ |+.+-.|..|...|
T Consensus 166 Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~e-Gv~i~~p~qv~~~W 244 (256)
T KOG0185|consen 166 YESPVVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEE-GVTISKPYQVKTNW 244 (256)
T ss_pred ccCchhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEccc-ceEecCceeeeecc
Confidence 999999999999999999999998 589999999999999999999998 5667999999996 77888888888888
Q ss_pred HhhccCCCC
Q psy5094 238 SKVSSIHDP 246 (251)
Q Consensus 238 ~~~~~~~~~ 246 (251)
. +.+++++
T Consensus 245 ~-fa~~~~g 252 (256)
T KOG0185|consen 245 D-FAETIKG 252 (256)
T ss_pred h-hhhhccc
Confidence 4 5555544
No 43
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.98 E-value=2.6e-31 Score=213.48 Aligned_cols=165 Identities=16% Similarity=0.197 Sum_probs=141.7
Q ss_pred CCcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEE-cCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHH
Q psy5094 34 GSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEI-DKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIES 111 (251)
Q Consensus 34 G~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 111 (251)
|+|+|||+++||||||+|+|.+. .++.+++.+||++| +++++|+++|..+|++.|.+.++.+++.|+.. . ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~~--~---~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQGN--L---LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccCc--c---HHH
Confidence 78999999999999999999998 56778999999999 99999999999999999999999999998832 2 466
Q ss_pred HHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeec--CEEEeCCCchhHHHHHHhhhc-CCC
Q psy5094 112 VAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQF--DAKAIGSGSEGAQQSLQEVYH-ESM 188 (251)
Q Consensus 112 l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~-~~~ 188 (251)
+++.+..+.. +.. .+|+.+.+|++ |+ |+||.+||.|++.+. +++++|+|+.++.++||+.|+ ++|
T Consensus 76 ~a~l~~~l~~-~~~-------~~~l~~~~lv~--d~--~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m 143 (172)
T PRK05456 76 AVELAKDWRT-DRY-------LRRLEAMLIVA--DK--EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL 143 (172)
T ss_pred HHHHHHHHHh-ccC-------CCccEEEEEEE--cC--CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC
Confidence 6655544321 111 16888999994 43 799999999999766 899999999999999999999 999
Q ss_pred CHHHHHHHHHHHHHHHhhhcC-CCCcEEEEE
Q psy5094 189 TLKEAINHVLTILKQVMEEKL-NSTNVELCT 218 (251)
Q Consensus 189 s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~ 218 (251)
||++++++|++.+.+||. ++++|++-.
T Consensus 144 ---eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 144 ---SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred ---CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 999999999999999997 777887753
No 44
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.97 E-value=6.4e-30 Score=204.03 Aligned_cols=163 Identities=14% Similarity=0.137 Sum_probs=138.6
Q ss_pred CcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcC-cEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDK-HIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESV 112 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 112 (251)
+|+|||+++||||||+|+|.+. .++.+++.+||++|++ |++|+++|..+|++.|.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 6899999999999999999998 5677899999999999 999999999999999999999999999988774 44
Q ss_pred HHHHHHHHHHhcCccccccccCCcc-eeeEEEEEcCCCCeEEEECCCCceeec--CEEEeCCCchhHHHHHHhhhcCC-C
Q psy5094 113 AQAVSNLAIQFGDSDEESAMSRPFG-VAMLFAGLDSKGPQLFHLDPSGTYTQF--DAKAIGSGSEGAQQSLQEVYHES-M 188 (251)
Q Consensus 113 ~~~ls~~~~~~~~~~~~~~~~rP~~-~~~lv~G~d~~gp~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~-~ 188 (251)
++.+..++ .| + .+|+. +.++++++| +||.+||.|.+.+. +++++|+|+.+++++||..|+++ |
T Consensus 76 a~l~~~l~-~~-~-------~~~~l~a~~iv~~~~----~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~m 142 (171)
T cd01913 76 VELAKDWR-TD-R-------YLRRLEAMLIVADKE----HTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDL 142 (171)
T ss_pred HHHHHHHH-hc-c-------CcCceEEEEEEeCCC----cEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCC
Confidence 55544443 12 1 15555 666665443 89999999999998 49999999999999999999995 9
Q ss_pred CHHHHHHHHHHHHHHHhhhcC-CCCcEEEEE
Q psy5094 189 TLKEAINHVLTILKQVMEEKL-NSTNVELCT 218 (251)
Q Consensus 189 s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~ 218 (251)
+ +.+++.+|++.+.++|. ++++|++-.
T Consensus 143 s---~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 143 S---AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred C---HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 9 55999999999999997 677787753
No 45
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=4.5e-29 Score=198.05 Aligned_cols=161 Identities=36% Similarity=0.528 Sum_probs=154.0
Q ss_pred CcEEEEEeCCeEEEEEeccCCCcccC-CCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITSVLME-PSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVA 113 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 113 (251)
+|+||+++++||++|+|++.+.+... .....|++.++++++++++|..+|++.+.++++.+++.|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999987655 77899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeec-CEEEeCCCchhHHHHHHhhhcCCCCHHH
Q psy5094 114 QAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQF-DAKAIGSGSEGAQQSLQEVYHESMTLKE 192 (251)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~s~~e 192 (251)
+.+++.++.+++ . ||+++++|++|+|+++|+||.+||.|++.++ +++++|+++..+.++|++.++++++.++
T Consensus 81 ~~~~~~~~~~~~---~----~p~~~~~iiag~~~~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~ 153 (164)
T cd01901 81 KELAKLLQVYTQ---G----RPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEE 153 (164)
T ss_pred HHHHHHHHHhcC---C----CCcceEEEEEEEcCCCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHH
Confidence 999999999887 3 9999999999999988999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy5094 193 AINHVLTILK 202 (251)
Q Consensus 193 a~~l~~~~l~ 202 (251)
+++++.+||+
T Consensus 154 ~~~~~~~~l~ 163 (164)
T cd01901 154 AVELALKALK 163 (164)
T ss_pred HHHHHHHHHh
Confidence 9999999885
No 46
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.97 E-value=2.9e-29 Score=200.27 Aligned_cols=163 Identities=14% Similarity=0.163 Sum_probs=136.4
Q ss_pred CcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEE-cCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEI-DKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESV 112 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 112 (251)
+|+|||+++||||||+|+|.+. .++.+++.+||++| ++|++||++|..+|++.|.++++.+++.|+... .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6899999999999999999998 56779999999999 599999999999999999999999999988742 3555
Q ss_pred HHHHHHHHHHhcCccccccccCC-cceeeEEEEEcCCCCeEEEECCCCceeec--CEEEeCCCchhHHHHHHhhh-cCCC
Q psy5094 113 AQAVSNLAIQFGDSDEESAMSRP-FGVAMLFAGLDSKGPQLFHLDPSGTYTQF--DAKAIGSGSEGAQQSLQEVY-HESM 188 (251)
Q Consensus 113 ~~~ls~~~~~~~~~~~~~~~~rP-~~~~~lv~G~d~~gp~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~-~~~~ 188 (251)
++.++++. -| + .+| +.+.+|++|+ ++||.+||.|.+.+. +++++|+|+.+++++||..| +++|
T Consensus 76 a~l~~~~~-~~-~-------~~~~l~a~~iv~~~----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~ 142 (171)
T TIGR03692 76 VELAKDWR-TD-R-------YLRRLEAMLIVADK----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDL 142 (171)
T ss_pred HHHHHHHh-hc-c-------cccccEEEEEEEcC----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCC
Confidence 66655531 11 1 133 3377777644 389999999999996 69999999999999999999 4677
Q ss_pred CHHHHHHHHHHHHHHHhhhcC-CCCcEEEEE
Q psy5094 189 TLKEAINHVLTILKQVMEEKL-NSTNVELCT 218 (251)
Q Consensus 189 s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~ 218 (251)
+ |++++.++++.+.++|. ++++|++-.
T Consensus 143 s---a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 143 S---AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred C---HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 7 99999999999999997 677787753
No 47
>KOG0180|consensus
Probab=99.96 E-value=1.1e-28 Score=190.93 Aligned_cols=185 Identities=19% Similarity=0.256 Sum_probs=172.7
Q ss_pred hcCCcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHH
Q psy5094 32 KLGSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIE 110 (251)
Q Consensus 32 ~~G~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 110 (251)
-+|+++||.++|++|.||+|.|... ......+.+||++++|++++|.+|+..|++.+.++++..-..|+++.+++|-++
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 4899999999999999999999988 556688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCC-CCeEEEECCCCceee-cCEEEeCCCchhHHHHHHhhhcCCC
Q psy5094 111 SVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSK-GPQLFHLDPSGTYTQ-FDAKAIGSGSEGAQQSLQEVYHESM 188 (251)
Q Consensus 111 ~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~-gp~Ly~id~~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~ 188 (251)
.+++++|.++|+. |+.||-+..+|||+|++ .|.+...|..|.... .+|++.|.++....+.+|..|+|+|
T Consensus 86 ~~s~mvS~~lYek--------RfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnm 157 (204)
T KOG0180|consen 86 TFSSMVSSLLYEK--------RFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNM 157 (204)
T ss_pred HHHHHHHHHHHHh--------hcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCC
Confidence 9999999999653 24799999999999965 599999999999974 7999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCC
Q psy5094 189 TLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKM 224 (251)
Q Consensus 189 s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~ 224 (251)
..++..+.+.+++-.+.+||. ++.+..+.+|+||+.
T Consensus 158 epd~LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv 194 (204)
T KOG0180|consen 158 EPDELFETISQALLNAVDRDALSGWGAVVYIITKDKV 194 (204)
T ss_pred CHHHHHHHHHHHHHhHhhhhhhccCCeEEEEEccchh
Confidence 999999999999999999986 888999999999955
No 48
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.50 E-value=1.1e-14 Score=76.10 Aligned_cols=23 Identities=74% Similarity=1.324 Sum_probs=22.2
Q ss_pred CCCCCceeCCCCcchhhhhHHHH
Q psy5094 8 YDRGVNTFSPEGRLFQVEYAIEA 30 (251)
Q Consensus 8 yd~~~~~fsp~G~l~q~eya~~a 30 (251)
||.++|+|||+|||+|||||+||
T Consensus 1 YD~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred CCCCceeECCCCeEEeeEeeecC
Confidence 89999999999999999999987
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.1e-11 Score=99.13 Aligned_cols=188 Identities=16% Similarity=0.211 Sum_probs=140.7
Q ss_pred CcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEE----cCcEEEEeccchhHHHHHHHHHHHHHHH-HHhhhCCCCCH
Q psy5094 35 STAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEI----DKHIGCAASGLIADSRILTDRARVECAN-HWFTYDEKMDI 109 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i----~~~i~~~~sG~~~D~~~l~~~~~~~~~~-~~~~~~~~i~~ 109 (251)
+.|||++...|.|+++|+|...+.-.....+|++-- +.-++++.+|..+-.|.+++.+.+..+. ..-.--.-.+.
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm 81 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSM 81 (255)
T ss_pred ceEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhH
Confidence 469999999999999999987754323344555433 2336788899999999999988776641 11111123466
Q ss_pred HHHHHHHHHHHHHhcCcccccc--ccCCcceeeEEEEEcCCC-CeEEEECCCCceee----cCEEEeCCCchhHHHHHHh
Q psy5094 110 ESVAQAVSNLAIQFGDSDEESA--MSRPFGVAMLFAGLDSKG-PQLFHLDPSGTYTQ----FDAKAIGSGSEGAQQSLQE 182 (251)
Q Consensus 110 ~~l~~~ls~~~~~~~~~~~~~~--~~rP~~~~~lv~G~d~~g-p~Ly~id~~G~~~~----~~~~a~G~g~~~~~~~Le~ 182 (251)
-..+..+++...+-..+....+ ..--|.|++|++|.=.++ |.||.+-|.|++.+ .+|.-+|.. .+-+++|++
T Consensus 82 ~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGEt-KYGKPildR 160 (255)
T COG3484 82 YEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGET-KYGKPILDR 160 (255)
T ss_pred HHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEcccc-ccCchhhhh
Confidence 6677777776654433322211 124689999999987655 89999999999984 689999954 788999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHhhhcCCCC-cEEEEEEEcCC
Q psy5094 183 VYHESMTLKEAINHVLTILKQVMEEKLNST-NVELCTVTADK 223 (251)
Q Consensus 183 ~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~-~i~i~~i~~~~ 223 (251)
.+..+++++||.+.++-++....+..++.+ .+++.++.+|.
T Consensus 161 ~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds 202 (255)
T COG3484 161 TITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADS 202 (255)
T ss_pred hhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccc
Confidence 999999999999999999999888877655 58888888873
No 50
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=9.9e-11 Score=90.61 Aligned_cols=168 Identities=17% Similarity=0.203 Sum_probs=118.9
Q ss_pred cCCcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEE-cCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHH
Q psy5094 33 LGSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEI-DKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIE 110 (251)
Q Consensus 33 ~G~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 110 (251)
+++|||+++-++-|+||.|.+++- +.+...+.+|+..| +.++..|++|..+|+..|.+.+...++.|.- .+ .+
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g----~L-~r 77 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQG----DL-FR 77 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccC----cH-HH
Confidence 689999999999999999999988 45555565555555 4589999999999999999999988887641 10 11
Q ss_pred HHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceee--cCEEEeCCCchhHHHHHHhhhcC-C
Q psy5094 111 SVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQ--FDAKAIGSGSEGAQQSLQEVYHE-S 187 (251)
Q Consensus 111 ~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~--~~~~a~G~g~~~~~~~Le~~~~~-~ 187 (251)
..+....++ ++.+ ..|-+.+-+|++ |+ -.+|-+.-.|-+.+ ...+++|||..++.+-....+.. +
T Consensus 78 aavelaKdw---r~Dk-----~lr~LEAmllVa--d~--~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ 145 (178)
T COG5405 78 AAVELAKDW---RTDK-----YLRKLEAMLLVA--DK--THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTE 145 (178)
T ss_pred HHHHHHHhh---hhhh-----HHHHHhhheeEe--CC--CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccC
Confidence 222222222 1111 124566777776 44 44888889998885 46999999999999887777643 4
Q ss_pred CCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEE
Q psy5094 188 MTLKEAINHVLTILKQVMEEKL-NSTNVELCTVT 220 (251)
Q Consensus 188 ~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~ 220 (251)
+| |-+++.++|..+.+-.+ +..+|.|-.++
T Consensus 146 ls---A~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 146 LS---AREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred CC---HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 44 55678888888876655 45567766554
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=96.10 E-value=0.38 Score=39.10 Aligned_cols=154 Identities=19% Similarity=0.235 Sum_probs=88.4
Q ss_pred CcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQ 114 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~ 114 (251)
+.+||..+++|+|||.|+| =+++-|.......|-+ .+..|.--+=+.|.+
T Consensus 2 SLII~y~GknGaViaGDkR---------------------~I~F~G~~~~re~LEe---------eLYsG~IktdeEL~k 51 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKR---------------------NIAFRGDEEKREKLEE---------ELYSGKIKTDEELLK 51 (194)
T ss_pred eEEEEEecCCCcEEeccce---------------------eeeecCCHHHHHHHHH---------HHhCCccCCHHHHHH
Confidence 4689999999999999988 1456676665544433 222344445566665
Q ss_pred HHHHHHHHhcCcccccccc--CCcceeeEEEEEc------CCCCeEEEE-------CCCCceeec-------CEEEeCCC
Q psy5094 115 AVSNLAIQFGDSDEESAMS--RPFGVAMLFAGLD------SKGPQLFHL-------DPSGTYTQF-------DAKAIGSG 172 (251)
Q Consensus 115 ~ls~~~~~~~~~~~~~~~~--rP~~~~~lv~G~d------~~gp~Ly~i-------d~~G~~~~~-------~~~a~G~g 172 (251)
...++=-...-. +-+. +-.+ .++++-+- ...-.+|.. |-.|.-... ...+.|..
T Consensus 52 kA~Elgv~i~I~---D~r~KV~~~~-~vlvGEV~s~~g~~skRRRiY~t~g~~~Ivei~~~~i~~~~~g~~sgiIVfGNk 127 (194)
T PF09894_consen 52 KAEELGVKIKIT---DDREKVRKIG-DVLVGEVTSISGKDSKRRRIYATKGKYAIVEIENDEITNKSRGEGSGIIVFGNK 127 (194)
T ss_pred HHHHcCCEEEEe---cCchheEEeC-CEEEEEEEEEcCccceeeEEEecCCCEEEEEecCCeEEEEecCCceeEEEECCH
Confidence 554431000000 0000 1122 24444333 222345543 222222111 12333322
Q ss_pred --chhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcCC-CCcEEEEEEEcC
Q psy5094 173 --SEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLN-STNVELCTVTAD 222 (251)
Q Consensus 173 --~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~-~~~i~i~~i~~~ 222 (251)
.+.+...|.++|++.|+++++.++..++|..+.+...+ ++.+++...++.
T Consensus 128 ~~K~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 128 FTKEIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 16688899999999999999999999999999766554 556888777654
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.35 E-value=2.4 Score=35.83 Aligned_cols=169 Identities=17% Similarity=0.277 Sum_probs=99.8
Q ss_pred CcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQ 114 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~ 114 (251)
+.+|+..+++|.|+|.|+| -+.+-|.-.|-..+-+ ++..|.--+-++|++
T Consensus 2 tLviay~gknGaviaGDrR---------------------~i~frgdee~re~lEe---------kLYsGeIkteEEL~r 51 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRR---------------------EITFRGDEEDREKLEE---------KLYSGEIKTEEELAR 51 (293)
T ss_pred eEEEEEecCCCcEEeccce---------------------EEEEecChhHHHHHHH---------HhhcCccccHHHHHH
Confidence 4689999999999999977 1445666666554443 334555567777777
Q ss_pred HHHHHHHHhcCccccccccCCcceeeEEEEEcCCC------CeEEEECCCCcee--e-----cCEEEeCC-------Cc-
Q psy5094 115 AVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKG------PQLFHLDPSGTYT--Q-----FDAKAIGS-------GS- 173 (251)
Q Consensus 115 ~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~g------p~Ly~id~~G~~~--~-----~~~~a~G~-------g~- 173 (251)
.+.++=-+++-.... --.|-..-+++++-+...+ -.+|.. .|++. + .-....|. |.
T Consensus 52 ~aeel~Vki~vtDdr-~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT--~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk 128 (293)
T COG4079 52 KAEELGVKITVTDDR-NKVRKRNDGVVVGEVSSVERGIVKRRRVYAT--AGAYAIVELRGSEVTSTSQGKGSAIIVFGNK 128 (293)
T ss_pred HHHHcCCEEEEEcch-HhhhcccCcEEEEEeecccccceeeeEEeec--CCceEEEEecCCeeEeeecCCCceEEEECcH
Confidence 766552111110000 0012233345555554322 234433 23221 1 12222333 22
Q ss_pred ---hhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCC-CEEEcCHHHHHHH
Q psy5094 174 ---EGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADK-MYHLYSKEELEEE 236 (251)
Q Consensus 174 ---~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~-~~~~~~~~ei~~~ 236 (251)
+.+..+|.+.|.+.++++++.++..++|..+..... -++..+++.++..- ++.++-++++..+
T Consensus 129 ~~Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~~~rl~kkDie~L 196 (293)
T COG4079 129 FTKEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDPVLRLVKKDIETL 196 (293)
T ss_pred HHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCHHHHHHHHHHHHH
Confidence 457778999999999999999999999988875544 35678888887652 2556666666554
No 53
>KOG3361|consensus
Probab=82.28 E-value=2.4 Score=32.33 Aligned_cols=84 Identities=23% Similarity=0.308 Sum_probs=59.9
Q ss_pred EEECCCCceeecCEEEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCCEEEcCHHH
Q psy5094 153 FHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLYSKEE 232 (251)
Q Consensus 153 y~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~~~~~~~~e 232 (251)
..+|-+|.+...+|-..|-|+..+-+-+-..|-..+|++||.++--.-+ .+. ++--.+.+ -.-.+.++.
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kIkNteI---AKe-L~LPPVKL-------HCSMLAEDA 139 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKIKNTEI---AKE-LSLPPVKL-------HCSMLAEDA 139 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhcccHHH---HHh-ccCCchhh-------hhHHHHHHH
Confidence 4678899999999999999999999999999999999999987652211 111 11100100 033678888
Q ss_pred HHHHHHhhccCCCCC
Q psy5094 233 LEEELSKVSSIHDPT 247 (251)
Q Consensus 233 i~~~~~~~~~~~~~~ 247 (251)
|...+..+++..++.
T Consensus 140 IKaAikdyk~Kq~~~ 154 (157)
T KOG3361|consen 140 IKAAIKDYKEKQNKP 154 (157)
T ss_pred HHHHHHHHHHhccCC
Confidence 888888888776643
No 54
>PRK08868 flagellar protein FlaG; Provisional
Probab=62.80 E-value=35 Score=26.60 Aligned_cols=32 Identities=19% Similarity=0.133 Sum_probs=27.0
Q ss_pred CCcEEEEEEEcCCC--EEEcCHHHHHHHHHhhcc
Q psy5094 211 STNVELCTVTADKM--YHLYSKEELEEELSKVSS 242 (251)
Q Consensus 211 ~~~i~i~~i~~~~~--~~~~~~~ei~~~~~~~~~ 242 (251)
.+.+-|.|++++.+ .|.++++|+-+++..+.+
T Consensus 99 tgr~VVkViD~~T~EVIRQIP~Ee~L~la~~l~e 132 (144)
T PRK08868 99 SGRDVVTIYEASTGDIIRQIPDEEMLEVLRRLAE 132 (144)
T ss_pred CCCEEEEEEECCCCceeeeCCCHHHHHHHHHHHH
Confidence 45688999999876 999999999999887764
No 55
>PRK08452 flagellar protein FlaG; Provisional
Probab=58.87 E-value=39 Score=25.65 Aligned_cols=32 Identities=9% Similarity=0.004 Sum_probs=26.2
Q ss_pred CCcEEEEEEEcCCC--EEEcCHHHHHHHHHhhcc
Q psy5094 211 STNVELCTVTADKM--YHLYSKEELEEELSKVSS 242 (251)
Q Consensus 211 ~~~i~i~~i~~~~~--~~~~~~~ei~~~~~~~~~ 242 (251)
.+.+-|.|++++.+ .|.+|++|+-++...+.+
T Consensus 81 ~~~~vVkVvD~~T~eVIRqIP~Ee~L~l~~~m~e 114 (124)
T PRK08452 81 IKGLVVSVKEANGGKVIREIPSKEAIELMEYMRD 114 (124)
T ss_pred CCcEEEEEEECCCCceeeeCCCHHHHHHHHHHHH
Confidence 34588999999866 899999999988877654
No 56
>PRK07738 flagellar protein FlaG; Provisional
Probab=57.84 E-value=38 Score=25.46 Aligned_cols=32 Identities=6% Similarity=-0.023 Sum_probs=26.8
Q ss_pred CCcEEEEEEEcCCC--EEEcCHHHHHHHHHhhcc
Q psy5094 211 STNVELCTVTADKM--YHLYSKEELEEELSKVSS 242 (251)
Q Consensus 211 ~~~i~i~~i~~~~~--~~~~~~~ei~~~~~~~~~ 242 (251)
.+.+-|.+++++.+ .|.++++++-+++..+.+
T Consensus 74 t~~~vVkVvD~~T~EVIRQIPpEe~L~l~~~m~e 107 (117)
T PRK07738 74 LNEYYVQVVDERTNEVIREIPPKKLLDMYAAMME 107 (117)
T ss_pred CCcEEEEEEECCCCeeeeeCCCHHHHHHHHHHHH
Confidence 45689999999866 899999999998877654
No 57
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=55.16 E-value=22 Score=25.88 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=24.7
Q ss_pred CCcEEEEEEEcCCC--EEEcCHHHHHHHHHhhcc
Q psy5094 211 STNVELCTVTADKM--YHLYSKEELEEELSKVSS 242 (251)
Q Consensus 211 ~~~i~i~~i~~~~~--~~~~~~~ei~~~~~~~~~ 242 (251)
.+.+.|.+++++.+ .|.++++|+-.+...+.+
T Consensus 65 ~~~~vVkViD~~T~eVIRqIP~Ee~l~l~~~l~e 98 (107)
T PF03646_consen 65 SGRVVVKVIDKETGEVIRQIPPEELLDLAKRLRE 98 (107)
T ss_dssp TTEEEEEEEETTT-SEEEEE-HHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeCCcHHHHHHHHHHHH
Confidence 45689999999866 899999999988776653
No 58
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=53.80 E-value=26 Score=24.83 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=21.7
Q ss_pred EEEEEEcCC-CEEEcCHHHHHHHHHhhc
Q psy5094 215 ELCTVTADK-MYHLYSKEELEEELSKVS 241 (251)
Q Consensus 215 ~i~~i~~~~-~~~~~~~~ei~~~~~~~~ 241 (251)
-|+++++++ .|+++++++|..+|..-+
T Consensus 20 ~I~W~~k~~g~Fkl~~~~~vA~lWG~~K 47 (87)
T smart00413 20 IIRWTDRDGGEFKLVDPEEVARLWGQRK 47 (87)
T ss_pred eEEeeCCCCCEEEecCHHHHHHHHhhhc
Confidence 577888754 499999999999997544
No 59
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=52.34 E-value=19 Score=23.47 Aligned_cols=32 Identities=31% Similarity=0.389 Sum_probs=28.6
Q ss_pred ceeCC-CCcchhhhhHHHHHhcCCcEEEEEeCC
Q psy5094 13 NTFSP-EGRLFQVEYAIEAIKLGSTAIGISTSE 44 (251)
Q Consensus 13 ~~fsp-~G~l~q~eya~~a~~~G~tvvgi~~~~ 44 (251)
|.||+ +|.+.--+|+..|..+|-..|||+-.+
T Consensus 6 t~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 6 SDYSLLDGALSPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred cCCccccccCCHHHHHHHHHHcCCCEEEEeeCC
Confidence 57888 899998999999999999999998776
No 60
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=51.62 E-value=32 Score=24.22 Aligned_cols=27 Identities=7% Similarity=0.072 Sum_probs=21.7
Q ss_pred EEEEEcCCC-EEEcCHHHHHHHHHhhcc
Q psy5094 216 LCTVTADKM-YHLYSKEELEEELSKVSS 242 (251)
Q Consensus 216 i~~i~~~~~-~~~~~~~ei~~~~~~~~~ 242 (251)
|.+++++++ |++.++++|..+|..-+.
T Consensus 21 I~Wt~~~~~eFki~d~~~vA~lWG~~k~ 48 (85)
T PF00178_consen 21 IAWTGKRGGEFKIVDPEAVARLWGKHKN 48 (85)
T ss_dssp EEEEETSTTEEEESSHHHHHHHHHHHTT
T ss_pred eEeeccCCCeEEecCHHHHHHHHHHHcC
Confidence 678885544 999999999999976554
No 61
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=45.94 E-value=1e+02 Score=21.62 Aligned_cols=56 Identities=23% Similarity=0.215 Sum_probs=38.9
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCC-EEEcCHHHHHHHHHhhccCCC
Q psy5094 185 HESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKM-YHLYSKEELEEELSKVSSIHD 245 (251)
Q Consensus 185 ~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~-~~~~~~~ei~~~~~~~~~~~~ 245 (251)
.+.+|.++..+.+++.... .....+.+.|++.+|- ..+-+++|++..+.-++.-.|
T Consensus 17 d~~~s~e~L~~~v~~~c~~-----~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~n~~ 73 (83)
T cd06404 17 DPSISLEELCNEVRDMCRF-----HNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYELNKD 73 (83)
T ss_pred CCCcCHHHHHHHHHHHhCC-----CCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHhcCc
Confidence 3467777776666554332 2345799999999855 888999999988765554333
No 62
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=39.63 E-value=21 Score=21.86 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=23.6
Q ss_pred EeCCCchhHHHHHHhhh-cCCCCHHHHHHHHHH
Q psy5094 168 AIGSGSEGAQQSLQEVY-HESMTLKEAINHVLT 199 (251)
Q Consensus 168 a~G~g~~~~~~~Le~~~-~~~~s~~ea~~l~~~ 199 (251)
+.|+....+...+.+.. .++++.++.++.+++
T Consensus 12 ~LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKPGMDVEELIKQALK 44 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Confidence 35788888888888877 788999988777754
No 63
>PRK09732 hypothetical protein; Provisional
Probab=36.87 E-value=1.4e+02 Score=22.91 Aligned_cols=36 Identities=6% Similarity=0.001 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCC
Q psy5094 186 ESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKM 224 (251)
Q Consensus 186 ~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~ 224 (251)
+.||++.|.+++..++..+.+. +-.+.|+|+|..|.
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~---g~~v~iaVvD~~G~ 40 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN---NWSVSIAVADDGGH 40 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh---CCCEEEEEEcCCCC
Confidence 4689999999999999988764 34799999998865
No 64
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=33.90 E-value=68 Score=24.19 Aligned_cols=32 Identities=13% Similarity=0.064 Sum_probs=26.0
Q ss_pred CCcEEEEEEEcCCC--EEEcCHHHHHHHHHhhcc
Q psy5094 211 STNVELCTVTADKM--YHLYSKEELEEELSKVSS 242 (251)
Q Consensus 211 ~~~i~i~~i~~~~~--~~~~~~~ei~~~~~~~~~ 242 (251)
.+.+-|.+++++++ .|.+||+++-+++..+.+
T Consensus 77 lg~~vVkI~d~~TgeVIRqIPpee~L~l~~r~~d 110 (120)
T COG1334 77 LGELVVKIIDKDTGEVIRQIPPEEALELAARMRD 110 (120)
T ss_pred cCcEEEEEEECCCCcchhhCChHHHHHHHHHHHH
Confidence 34578899999877 889999999998877653
No 65
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=32.95 E-value=60 Score=20.20 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=24.9
Q ss_pred EEECCCCceeecCEEEeCCCchhHHHHHHhhh
Q psy5094 153 FHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVY 184 (251)
Q Consensus 153 y~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 184 (251)
|.|+|+|.+...--...|+....+...|++..
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 67899999987777777877777777777653
No 66
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=32.77 E-value=96 Score=23.38 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCC
Q psy5094 186 ESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKM 224 (251)
Q Consensus 186 ~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~ 224 (251)
|.++.++|.+++..++..+.+. +-.+-|+|++..+.
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~---g~~v~iaVvd~~G~ 36 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARER---GLPVSIAVVDAGGH 36 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHT---T---EEEEEETTS-
T ss_pred CCcCHHHHHHHHHHHHHHHHHh---CCCeEEEEEECCCC
Confidence 3578999999999999998764 22488888998755
No 67
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=32.76 E-value=63 Score=22.86 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=36.0
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCCEEEcCHHHHHH
Q psy5094 184 YHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLYSKEELEE 235 (251)
Q Consensus 184 ~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~~~~~~~~ei~~ 235 (251)
....++..|.+++.++=++.. .+..++-++.+-..|..+++.++|-.-
T Consensus 19 VsS~~tt~eVI~~LL~KFkv~----~~p~~FALy~vh~~Ge~rkL~d~E~PL 66 (87)
T cd01784 19 INSTMTTPQVLKLLLNKFKIE----NSAEEFALYIVHTSGEKRKLKATDYPL 66 (87)
T ss_pred EecCCCHHHHHHHHHHhcccc----CCHHHeEEEEEeeCCCEEECCCcCCCe
Confidence 346788888888887666554 355678898888887788999988643
No 68
>KOG3806|consensus
Probab=32.27 E-value=57 Score=26.33 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=21.7
Q ss_pred EEEEEEcCC-CEEEcCHHHHHHHHHhhc
Q psy5094 215 ELCTVTADK-MYHLYSKEELEEELSKVS 241 (251)
Q Consensus 215 ~i~~i~~~~-~~~~~~~~ei~~~~~~~~ 241 (251)
-|+|..+++ .|+.++++||..+|..-+
T Consensus 87 ~I~Wtg~~g~EFkl~dp~eVArlWG~rK 114 (177)
T KOG3806|consen 87 IIAWTGKDGLEFKLVDPDEVARLWGARK 114 (177)
T ss_pred eeEEeCCCCceEEecCHHHHHHHHhhhh
Confidence 467777776 599999999999997543
No 69
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=30.90 E-value=1.9e+02 Score=22.42 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=30.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCC
Q psy5094 185 HESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKM 224 (251)
Q Consensus 185 ~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~ 224 (251)
.+.+|++.|.+++..++..+.+. ...+.+.+++..|-
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~~---g~~VtvaVVD~~G~ 41 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQL---GVPVTVAVVDAGGH 41 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHHh---CCceEEEEECCCCC
Confidence 45789999999999998888643 66799999999855
No 70
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=30.49 E-value=1.4e+02 Score=21.05 Aligned_cols=32 Identities=13% Similarity=0.374 Sum_probs=25.6
Q ss_pred hhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHh
Q psy5094 174 EGAQQSLQEVYHESMTLKEAINHVLTILKQVM 205 (251)
Q Consensus 174 ~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~ 205 (251)
..+..+|++...+++|+++.+++=.+++....
T Consensus 32 erakeiLe~LndpeisL~eSvkLYkeG~~lL~ 63 (86)
T PRK14065 32 HSLEQAIDRLNDPNLSLKDGMDLYKTAMQELF 63 (86)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 45788899999999999999888777666543
No 71
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=28.39 E-value=1.1e+02 Score=18.33 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=22.1
Q ss_pred ceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEE
Q psy5094 13 NTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLA 49 (251)
Q Consensus 13 ~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla 49 (251)
-+-.|+|+..|+. +|-.-|.+.+..|+|+.
T Consensus 4 Gii~~dG~~~q~~-------~~~a~ivl~GpSG~v~s 33 (40)
T PF08140_consen 4 GIITPDGTNVQFP-------HGVANIVLIGPSGAVLS 33 (40)
T ss_pred ceECCCCCEEECC-------cccceEEEECCceEEee
Confidence 4567999999986 23326788889998875
No 72
>PF07797 DUF1639: Protein of unknown function (DUF1639); InterPro: IPR012438 This approximately 50-residue region is found in a number of sequences derived from hypothetical plant proteins. This region features a highly basic 5 amino-acid stretch towards its centre.
Probab=28.01 E-value=84 Score=19.78 Aligned_cols=23 Identities=30% Similarity=0.634 Sum_probs=18.3
Q ss_pred cCHHHHHHHHHhhccCCCCCCCC
Q psy5094 228 YSKEELEEELSKVSSIHDPTRPD 250 (251)
Q Consensus 228 ~~~~ei~~~~~~~~~~~~~~~~~ 250 (251)
|+.+||++-+-.+....=|+||+
T Consensus 1 Lsr~EieeDf~am~G~kpprRPk 23 (50)
T PF07797_consen 1 LSRKEIEEDFLAMTGSKPPRRPK 23 (50)
T ss_pred CCHHHHHHHHHHHhCCCCCCCCC
Confidence 56789988766788888888885
No 73
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=27.94 E-value=76 Score=25.50 Aligned_cols=36 Identities=31% Similarity=0.266 Sum_probs=26.3
Q ss_pred eeCCCCcchhhhhH-HHHHhcCCcEEEEEeCCeEEEE
Q psy5094 14 TFSPEGRLFQVEYA-IEAIKLGSTAIGISTSEGVVLA 49 (251)
Q Consensus 14 ~fsp~G~l~q~eya-~~a~~~G~tvvgi~~~~gVvla 49 (251)
-+|+.|.-.-|--| .+|..+|-++||++++||=-++
T Consensus 115 gISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~ 151 (176)
T COG0279 115 GISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLA 151 (176)
T ss_pred EEeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccc
Confidence 46777766554444 4556699999999999986654
No 74
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=27.86 E-value=40 Score=25.21 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=15.3
Q ss_pred CceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEE
Q psy5094 12 VNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLA 49 (251)
Q Consensus 12 ~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla 49 (251)
.-+|||||.. |+++|+|.|+--
T Consensus 72 vHvfSpDG~~----------------lSFTYNDhVmhe 93 (122)
T PF12566_consen 72 VHVFSPDGSW----------------LSFTYNDHVMHE 93 (122)
T ss_pred ceEECCCCCE----------------EEEEecchhhcc
Confidence 4578888875 677777777643
No 75
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=27.15 E-value=55 Score=25.25 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=26.9
Q ss_pred ceeC-CCCcchhhhhHHHHHhcCCcEEEEEeC
Q psy5094 13 NTFS-PEGRLFQVEYAIEAIKLGSTAIGISTS 43 (251)
Q Consensus 13 ~~fs-p~G~l~q~eya~~a~~~G~tvvgi~~~ 43 (251)
|.|| ++|...--||+..|.+.|=+.|||+-.
T Consensus 7 T~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTDH 38 (175)
T PF02811_consen 7 TKYSILDGKDSPEEYVEQAKEKGLDAIAITDH 38 (175)
T ss_dssp -TTTSSTSSSSHHHHHHHHHHTTESEEEEEEE
T ss_pred ccCcchhhcCCHHHHHHHHHHcCCCEEEEcCC
Confidence 5678 889998899999999999999999865
No 76
>PF11773 PulG: Type II secretory pathway pseudopilin ; InterPro: IPR021749 The secreton (type II secretion) and type IV pilus biogenesis branches of the general secretory pathway in Gram-negative bacteria share many features that suggest a common evolutionary origin. Five components of the secreton, the pseudopilins, are similar to subunits of type IV pili. Pseudopilin PulG is one of the secreton pseudopilins, and is found to assemble into pilus-like bundles []. PulG interacts with proteins H, I and J within the multi-protein complex as well as blocking extracellular secretion and reducing the amount of PulE protein as well as the amounts of PulL, PulM, PulC and PulD when G is over-expressed []. In Klebsiella the pilus-like structure is composed largely of PulG [].
Probab=25.34 E-value=79 Score=22.12 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCCEEEcCH
Q psy5094 187 SMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLYSK 230 (251)
Q Consensus 187 ~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~~~~~~~ 230 (251)
.+-.+|++.+|..|+..--+ .++-++++|.+...+++...+..
T Consensus 33 ~l~qqEvLnvA~MAvQT~Q~-~L~lNGv~V~v~~~~~~i~V~~~ 75 (82)
T PF11773_consen 33 ELQQQEVLNVAQMAVQTGQD-HLSLNGVEVQVERTQKGIIVYEG 75 (82)
T ss_pred HHHHHHHHHHHHHHHHhCcc-eEEEcCeEEEEEEcCCeEEEEeC
Confidence 44567899999888776543 36778899998888877665544
No 77
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=24.85 E-value=1.8e+02 Score=18.11 Aligned_cols=31 Identities=6% Similarity=0.144 Sum_probs=22.1
Q ss_pred hHHHHHHhhhcCCCCHHHHHHHHHHHHHHHh
Q psy5094 175 GAQQSLQEVYHESMTLKEAINHVLTILKQVM 205 (251)
Q Consensus 175 ~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~ 205 (251)
....++++.-++++|+++++++-.++...+.
T Consensus 7 ~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~ 37 (53)
T PF02609_consen 7 RLEEIVEKLESGELSLDESLKLYEEGMELIK 37 (53)
T ss_dssp HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3456677777789999999999888877654
No 78
>PF14191 YodL: YodL-like
Probab=24.25 E-value=92 Score=22.80 Aligned_cols=64 Identities=16% Similarity=0.254 Sum_probs=39.7
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCce
Q psy5094 95 ECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTY 161 (251)
Q Consensus 95 ~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~ 161 (251)
....|+..|..++... ..|-++...|...-......++++++=||.=.++++-+-|.+|+.|-.
T Consensus 34 ~~~~Y~~VY~~~l~~~---~~Le~iy~~FN~~~P~df~GhsLSvSDVV~l~~~g~~~~yYvDs~GF~ 97 (103)
T PF14191_consen 34 DPENYRLVYDGELDHT---ETLEDIYERFNVDHPEDFKGHSLSVSDVVELYDGGKSSFYYVDSFGFK 97 (103)
T ss_pred ChHHceEEEEEecCCC---CCHHHHHHHhCcCCCCCCCCCccChheEEEEEcCCceEEEEECCCCCe
Confidence 3466777777776611 223333333443323344568999998888666666889999977753
No 79
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=23.42 E-value=95 Score=25.47 Aligned_cols=40 Identities=8% Similarity=0.166 Sum_probs=30.4
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEc
Q psy5094 96 CANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLD 146 (251)
Q Consensus 96 ~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d 146 (251)
++.|.+. +-+++..+..|+++++.|.++++. -.++++|+.
T Consensus 37 sl~Yfw~---~rtP~~~a~Dl~~~i~~y~~~w~~--------~~vvLiGYS 76 (192)
T PF06057_consen 37 SLRYFWS---ERTPEQTAADLARIIRHYRARWGR--------KRVVLIGYS 76 (192)
T ss_pred hHHHHhh---hCCHHHHHHHHHHHHHHHHHHhCC--------ceEEEEeec
Confidence 3455554 557799999999999999988765 356788886
No 80
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=23.35 E-value=1.8e+02 Score=21.28 Aligned_cols=29 Identities=0% Similarity=0.003 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhhhCC-CCCHHHHH
Q psy5094 85 SRILTDRARVECANHWFTYDE-KMDIESVA 113 (251)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~-~i~~~~l~ 113 (251)
+..++..++.+++.|++..++ ++|++.|.
T Consensus 49 c~A~vkmV~sQ~~~YeLdh~~~~pSl~~L~ 78 (107)
T COG4537 49 CEAVVKMVESQAEAYELDHNRLPPSLSDLK 78 (107)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 456788888999999999988 77777554
No 81
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=23.14 E-value=1.3e+02 Score=19.05 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEc
Q psy5094 188 MTLKEAINHVLTILKQVMEEKLNSTNVELCTVTA 221 (251)
Q Consensus 188 ~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~ 221 (251)
-|++||++.+..-|..- ...+++-+|.+
T Consensus 5 kt~eeAi~~A~~~l~~~------~~~~~~eVi~~ 32 (52)
T PF14804_consen 5 KTVEEAIEKALKELGVP------REELEYEVIEE 32 (52)
T ss_dssp SSHHHHHHHHHHHTT--------GGGEEEEEEE-
T ss_pred CCHHHHHHHHHHHhCCC------hHHEEEEEEEc
Confidence 47889988886655443 35688888887
No 82
>KOG0279|consensus
Probab=22.86 E-value=2e+02 Score=25.14 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=32.5
Q ss_pred CCCCcCCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEE
Q psy5094 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIV 68 (251)
Q Consensus 1 ~~~~~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~ 68 (251)
||..+++|-... +|||||.+ .+--+|||.++.-|-+...++......+-|.
T Consensus 187 ~~~gh~~~v~t~-~vSpDGsl----------------casGgkdg~~~LwdL~~~k~lysl~a~~~v~ 237 (315)
T KOG0279|consen 187 TFIGHSGYVNTV-TVSPDGSL----------------CASGGKDGEAMLWDLNEGKNLYSLEAFDIVN 237 (315)
T ss_pred ccccccccEEEE-EECCCCCE----------------EecCCCCceEEEEEccCCceeEeccCCCeEe
Confidence 455666776444 78888877 2226899999998877666554433334343
No 83
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=21.30 E-value=3.1e+02 Score=19.39 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCC-EEEcCHHHHHHHHHhhc
Q psy5094 187 SMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKM-YHLYSKEELEEELSKVS 241 (251)
Q Consensus 187 ~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~-~~~~~~~ei~~~~~~~~ 241 (251)
..+.++..+.+.+.+.. +....+.|.|.+.+|- +.+-+++|+...+...+
T Consensus 26 ~~s~~~L~~~V~~~f~~-----l~~~~ftlky~DeeGDlvtIssdeEL~~A~~~~~ 76 (87)
T cd06402 26 STSYEYLVEKVAAVFPS-----LRGKNFQLFWKDEEGDLVAFSSDEELVMALGSLN 76 (87)
T ss_pred CcCHHHHHHHHHHHccc-----cCCCcEEEEEECCCCCEEeecCHHHHHHHHHcCC
Confidence 35566666555444322 2346899999999866 77889999988876654
No 84
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.12 E-value=97 Score=22.65 Aligned_cols=31 Identities=23% Similarity=0.224 Sum_probs=26.7
Q ss_pred cEEEEcCcEEEEeccchhHHHHHHHHHHHHH
Q psy5094 66 KIVEIDKHIGCAASGLIADSRILTDRARVEC 96 (251)
Q Consensus 66 KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 96 (251)
-+|.|.+.+++.+.|..+|.-.+.+.++...
T Consensus 9 ~~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~ 39 (124)
T COG4728 9 IIFKIKDKLGLTFVSKSADMSIQVEKAERLI 39 (124)
T ss_pred EEEEEhhhcCcEEEEecchhHHHHHHHHHhh
Confidence 4688999999999999999999988887654
No 85
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=20.26 E-value=1.9e+02 Score=16.68 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=13.1
Q ss_pred CCEEEcCHHHHHHHHH
Q psy5094 223 KMYHLYSKEELEEELS 238 (251)
Q Consensus 223 ~~~~~~~~~ei~~~~~ 238 (251)
++..+++.+|++.+++
T Consensus 33 g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 33 GRHYRIPREDVDEYLE 48 (49)
T ss_pred CCeEEEeHHHHHHHHh
Confidence 3567899999999875
Done!