Query psy5094
Match_columns 251
No_of_seqs 131 out of 1166
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 17:09:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yar_A Proteasome alpha subuni 100.0 3.7E-64 1.3E-68 424.5 27.4 232 1-236 1-232 (233)
2 1j2p_A Alpha-ring, proteasome 100.0 1.8E-63 6.1E-68 423.5 30.2 236 1-241 1-237 (246)
3 1iru_E 20S proteasome; cell cy 100.0 8.8E-64 3E-68 424.2 26.8 240 1-240 1-241 (241)
4 1ryp_A 20S proteasome; multica 100.0 8.1E-63 2.8E-67 418.7 27.4 232 6-242 1-241 (243)
5 1iru_B 20S proteasome; cell cy 100.0 1.4E-62 4.9E-67 414.8 28.7 231 5-240 2-232 (233)
6 1iru_A 20S proteasome; cell cy 100.0 1.6E-62 5.4E-67 417.7 28.7 238 1-242 1-244 (246)
7 3h4p_A Proteasome subunit alph 100.0 5.3E-63 1.8E-67 423.8 23.0 236 3-243 7-243 (264)
8 1ryp_C 20S proteasome; multica 100.0 1E-61 3.6E-66 412.2 29.8 232 7-242 4-243 (244)
9 1iru_F 20S proteasome; cell cy 100.0 5.7E-62 1.9E-66 417.7 25.7 232 4-241 2-237 (263)
10 1ryp_D 20S proteasome; multica 100.0 4.7E-61 1.6E-65 407.4 31.0 230 7-242 1-236 (241)
11 1iru_C 20S proteasome; cell cy 100.0 3.7E-61 1.3E-65 412.4 30.1 238 5-246 2-246 (261)
12 1iru_G 20S proteasome; cell cy 100.0 3.9E-61 1.3E-65 410.7 27.7 237 3-243 2-242 (254)
13 1iru_D 20S proteasome; cell cy 100.0 6.6E-61 2.3E-65 408.0 26.8 230 8-243 3-235 (248)
14 1ryp_F 20S proteasome; multica 100.0 8.9E-62 3E-66 409.9 21.0 227 4-236 1-232 (233)
15 1ryp_E 20S proteasome; multica 100.0 1.1E-60 3.7E-65 405.4 26.5 234 9-242 1-237 (242)
16 3nzj_F Proteasome component C1 100.0 2.8E-60 9.7E-65 410.6 28.0 232 1-236 1-239 (288)
17 1ryp_B 20S proteasome; multica 100.0 5.9E-60 2E-64 402.7 29.5 231 5-239 2-249 (250)
18 1ryp_G 20S proteasome; multica 100.0 3.1E-59 1E-63 396.8 29.3 232 5-240 1-238 (244)
19 1q5q_A Proteasome alpha-type s 100.0 1.3E-51 4.5E-56 352.5 21.7 218 12-242 4-237 (259)
20 3mi0_A Proteasome subunit alph 100.0 8.3E-50 2.8E-54 338.6 24.4 214 16-242 8-239 (248)
21 1yar_H Proteasome beta subunit 100.0 1.5E-47 5E-52 319.7 25.9 206 29-243 3-210 (217)
22 3h4p_a Proteasome subunit beta 100.0 2.6E-47 9E-52 318.6 23.5 201 34-243 1-205 (219)
23 1j2q_H Proteasome beta subunit 100.0 1.4E-46 4.8E-51 310.5 24.8 198 35-241 1-201 (202)
24 3nzj_K Proteasome component PR 100.0 8.8E-47 3E-51 326.1 21.9 218 16-242 51-277 (287)
25 2jay_A Proteasome; hydrolase; 100.0 3.4E-46 1.1E-50 323.2 23.6 232 5-243 22-277 (291)
26 1iru_L 20S proteasome; cell cy 100.0 3.8E-46 1.3E-50 308.3 22.6 199 35-242 1-201 (204)
27 1ryp_L 20S proteasome; multica 100.0 6.6E-46 2.2E-50 308.7 21.9 204 35-247 1-207 (212)
28 1q5r_H Proteasome beta-type su 100.0 1.2E-45 4E-50 320.1 23.7 211 27-243 58-285 (294)
29 1iru_N 20S proteasome; cell cy 100.0 1E-46 3.6E-51 315.0 14.8 209 28-244 2-215 (219)
30 1ryp_N 20S proteasome; multica 100.0 2.8E-46 9.4E-51 315.2 14.0 210 28-244 2-225 (233)
31 1iru_H 20S proteasome; cell cy 100.0 3.1E-45 1.1E-49 303.1 19.2 196 35-239 1-200 (205)
32 1q5q_H Proteasome beta-type su 100.0 2.3E-44 8E-49 303.7 23.4 202 35-242 1-219 (235)
33 3nzj_H Proteasome component PU 100.0 2.6E-44 9E-49 307.0 23.7 199 27-234 22-222 (261)
34 1ryp_H 20S proteasome; multica 100.0 2.2E-44 7.6E-49 298.0 20.4 189 28-226 3-194 (205)
35 1g0u_M Proteasome component PR 100.0 1.4E-45 4.9E-50 316.3 13.0 215 24-245 31-259 (266)
36 3unf_H Proteasome subunit beta 100.0 4.2E-44 1.4E-48 301.5 20.5 194 35-238 1-196 (234)
37 1ryp_K 20S proteasome; multica 100.0 1.6E-43 5.4E-48 291.3 22.8 189 35-230 2-194 (198)
38 1iru_M 20S proteasome; cell cy 100.0 1.2E-42 4E-47 289.2 24.2 186 31-224 6-203 (213)
39 1ryp_I 20S proteasome; multica 100.0 1.6E-42 5.5E-47 290.1 23.5 190 35-233 1-192 (222)
40 3unf_N Proteasome subunit beta 100.0 1.9E-43 6.4E-48 291.1 16.6 192 35-237 1-197 (199)
41 1ryp_M 20S proteasome; multica 100.0 3.7E-42 1.3E-46 287.9 23.1 187 30-224 5-212 (222)
42 1iru_J 20S proteasome; cell cy 100.0 4.4E-42 1.5E-46 284.1 23.2 186 31-224 5-195 (205)
43 1ryp_J 20S proteasome; multica 100.0 1E-41 3.6E-46 281.7 24.1 186 30-224 4-194 (204)
44 1iru_I 20S proteasome; cell cy 100.0 1.8E-42 6.2E-47 291.9 19.7 193 35-237 1-195 (234)
45 1iru_K 20S proteasome; cell cy 100.0 9.8E-42 3.3E-46 281.3 22.5 188 35-229 2-192 (201)
46 2z3b_A ATP-dependent protease 100.0 8.4E-35 2.9E-39 235.7 18.6 168 32-219 3-179 (180)
47 1m4y_A ATP-dependent protease 100.0 3.4E-34 1.2E-38 230.3 18.7 165 35-219 1-171 (171)
48 1g3k_A ATP-dependent protease 100.0 8.4E-34 2.9E-38 228.7 18.2 166 35-220 1-173 (174)
49 2hc5_A ORF 99, hypothetical pr 63.5 8.8 0.0003 27.7 4.2 31 211-241 66-98 (117)
50 1vd2_A Protein kinase C, IOTA 50.3 27 0.00091 23.9 4.6 57 184-245 22-79 (89)
51 1yo5_C SAM pointed domain cont 48.4 24 0.00083 24.5 4.2 26 216-241 31-57 (97)
52 2dao_A Transcription factor ET 39.9 31 0.001 24.9 3.7 27 215-241 27-54 (118)
53 3jx9_A Putative phosphoheptose 38.0 22 0.00075 27.4 2.9 31 12-42 81-112 (170)
54 1hbx_G ETS-domain protein ELK- 36.3 26 0.0009 26.5 3.0 26 216-241 25-50 (157)
55 1bc8_C SAP-1, protein (SAP-1 E 35.6 15 0.00052 25.4 1.5 26 216-241 24-49 (93)
56 3jtg_A ETS-related transcripti 33.8 47 0.0016 23.3 3.9 26 216-241 25-51 (103)
57 1wwx_A E74-like factor 5 ESE-2 33.4 36 0.0012 24.1 3.2 26 216-241 29-55 (107)
58 1fli_A FLI-1; transcription/DN 31.3 20 0.00068 25.0 1.5 26 216-241 25-50 (98)
59 2yxo_A Histidinol phosphatase; 29.9 31 0.0011 27.7 2.8 32 13-44 8-39 (267)
60 1awc_A Protein (GA binding pro 29.4 22 0.00074 25.4 1.5 26 216-241 20-45 (110)
61 4avp_A ETS translocation varia 29.1 34 0.0012 24.2 2.4 26 216-241 31-56 (106)
62 4eo3_A Bacterioferritin comigr 27.7 16 0.00056 31.0 0.7 45 150-194 103-148 (322)
63 3fpw_A HBPS, extracellular HAE 22.1 2E+02 0.007 22.4 6.1 37 185-224 62-98 (192)
No 1
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=3.7e-64 Score=424.51 Aligned_cols=232 Identities=39% Similarity=0.661 Sum_probs=213.1
Q ss_pred CCCCcCCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEecc
Q psy5094 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASG 80 (251)
Q Consensus 1 ~~~~~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG 80 (251)
|||++++||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+++++..++.+||++|++|++|+++|
T Consensus 1 ~~m~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG 80 (233)
T 1yar_A 1 MQQGQMAYSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSG 80 (233)
T ss_dssp ------------CCCCTTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEE
T ss_pred CCcccccCCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEee
Confidence 89999999999999999999999999999999999999999999999999999999987788999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCc
Q psy5094 81 LIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGT 160 (251)
Q Consensus 81 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~ 160 (251)
..+|++.+.++++.+++.|+++++++++++.+++.+++++|.|+++.+. |||++++||||||++||+||.+||.|+
T Consensus 81 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~----rp~~v~~lvaG~D~~gp~Ly~id~~G~ 156 (233)
T 1yar_A 81 LVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGV----RPYGVSLIFAGIDQIGPRLFDCDPAGT 156 (233)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTB----CCCCEEEEEEEECSSCEEEEEECTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCc----CcceEEEEEEEEeCCCCEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999998766 999999999999998999999999999
Q ss_pred eeecCEEEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCCEEEcCHHHHHHH
Q psy5094 161 YTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLYSKEELEEE 236 (251)
Q Consensus 161 ~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~~~~~~~~ei~~~ 236 (251)
+.+++++++|+|+..++++||+.|+++|+++||++++++||..+.++|+++++++|++|++++++++++++||+++
T Consensus 157 ~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~s~~~i~v~vi~~~~~~~~~~~~ei~~~ 232 (233)
T 1yar_A 157 INEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKF 232 (233)
T ss_dssp EEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSCCCCCCEEEEEETTSCCEECCHHHHHTT
T ss_pred EEeeeEEEEcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCEEECCHHHHHhh
Confidence 9999999999999999999999999999999999999999999999988878899999999977999999999875
No 2
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=1.8e-63 Score=423.47 Aligned_cols=236 Identities=39% Similarity=0.676 Sum_probs=224.3
Q ss_pred CCCCcCCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEecc
Q psy5094 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASG 80 (251)
Q Consensus 1 ~~~~~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG 80 (251)
|||++++||+.+|+|||||||+|||||.+++++|+|+|||+++||||||+|+|.+.+++..++.+||++|++|++|+++|
T Consensus 1 ~~~~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG 80 (246)
T 1j2p_A 1 MHLPQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSG 80 (246)
T ss_dssp ---CCTTSSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEE
T ss_pred CCccccCcCCCCceECCCCeehHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeE
Confidence 89999999999999999999999999999999999999999999999999999999887788899999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCc
Q psy5094 81 LIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGT 160 (251)
Q Consensus 81 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~ 160 (251)
..+|++.+.++++.+++.|++.++++++++.+++.+++++|.|+++.+. |||++++|||||| +||+||.+||.|+
T Consensus 81 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~----rp~~v~~lvaG~D-~gp~Ly~idp~G~ 155 (246)
T 1j2p_A 81 LVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGV----RPFGVSLLIAGVN-EVPKLYETDPSGA 155 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTB----CCCCEEEEEEEES-SSEEEEEECTTCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCc----ccccEEEEEEEEC-CCCEEEEECCCce
Confidence 9999999999999999999999999999999999999999999998766 9999999999999 8999999999999
Q ss_pred eeecCEEEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEE-cCCCEEEcCHHHHHHHHHh
Q psy5094 161 YTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVT-ADKMYHLYSKEELEEELSK 239 (251)
Q Consensus 161 ~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~-~~~~~~~~~~~ei~~~~~~ 239 (251)
+.+++++|+|+|+..++++|++.|+++|+++||++++++||..+.++..++++++|++|+ +++++++++++||++++..
T Consensus 156 ~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~l~~~ei~~~~~~ 235 (246)
T 1j2p_A 156 LLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVER 235 (246)
T ss_dssp EEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEETTTCCCEECCHHHHHHHHHH
T ss_pred EEeeeEEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCceEECCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999884577789999999 7668999999999999988
Q ss_pred hc
Q psy5094 240 VS 241 (251)
Q Consensus 240 ~~ 241 (251)
+.
T Consensus 236 ~~ 237 (246)
T 1j2p_A 236 AN 237 (246)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 3
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=8.8e-64 Score=424.16 Aligned_cols=240 Identities=75% Similarity=1.124 Sum_probs=220.4
Q ss_pred CCCCcCCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEecc
Q psy5094 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASG 80 (251)
Q Consensus 1 ~~~~~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG 80 (251)
|||++++||+.+|+|||||||+|||||.+|+++|+|+|||+++||||||+|+|.+++++..++.+||++|++|++|+++|
T Consensus 1 ~~m~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG 80 (241)
T 1iru_E 1 MFLTRSEYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSG 80 (241)
T ss_dssp -------CCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEE
T ss_pred CCCccCCCCCCCceECCCCccHHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEEee
Confidence 89999999999999999999999999999999999999999999999999999999876688899999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccc-cccccCCcceeeEEEEEcCCCCeEEEECCCC
Q psy5094 81 LIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDE-ESAMSRPFGVAMLFAGLDSKGPQLFHLDPSG 159 (251)
Q Consensus 81 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~-~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G 159 (251)
..+|++.+.++++.+++.|+++++++++++.+++.+++++|.|+++.+ ..+|.|||++++||||||++||+||.+||.|
T Consensus 81 ~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp~Ly~idp~G 160 (241)
T 1iru_E 81 LIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSG 160 (241)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCCEEEEECCCC
Confidence 999999999999999999999999999999999999999999988765 0122399999999999998889999999999
Q ss_pred ceeecCEEEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCCEEEcCHHHHHHHHHh
Q psy5094 160 TYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLYSKEELEEELSK 239 (251)
Q Consensus 160 ~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~~~~~~~~ei~~~~~~ 239 (251)
++.+++++|+|+|+..++++||+.|+++|+++||++++++||..+.++..++.+++|++|++++.+++++++||++++++
T Consensus 161 ~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~~ 240 (241)
T 1iru_E 161 TFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKD 240 (241)
T ss_dssp CEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEECSSSCCEECCHHHHHHHHTT
T ss_pred cEEecceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCCeEECCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998855778999999999988999999999999865
Q ss_pred h
Q psy5094 240 V 240 (251)
Q Consensus 240 ~ 240 (251)
+
T Consensus 241 ~ 241 (241)
T 1iru_E 241 I 241 (241)
T ss_dssp C
T ss_pred C
Confidence 3
No 4
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=8.1e-63 Score=418.73 Aligned_cols=232 Identities=27% Similarity=0.537 Sum_probs=222.9
Q ss_pred CCCCCCCceeCCCCcchhhhhHHHHHhc-CCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccchhH
Q psy5094 6 SEYDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLIAD 84 (251)
Q Consensus 6 ~~yd~~~~~fsp~G~l~q~eya~~a~~~-G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D 84 (251)
++||+.+|+|||||||+|||||+||+++ |+|+|||+++||||||+|+|.+.+++..++.+||++|++|++|+++|..+|
T Consensus 1 ~~yd~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 80 (243)
T 1ryp_A 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD 80 (243)
T ss_dssp CGGGGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHH
T ss_pred CCCCCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHH
Confidence 5899999999999999999999999999 999999999999999999999977887889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcC-CCCeEEEECCCCceee
Q psy5094 85 SRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQ 163 (251)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~-~gp~Ly~id~~G~~~~ 163 (251)
++.++++++.+++.|++.+++++|++.+++++++++|.|+++++. |||+|++||||||+ +||+||++||.|++.+
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~----rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~ 156 (243)
T 1ryp_A 81 ARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYM----RPLGVILTFVSVDEELGPSIYKTDPAGYYVG 156 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTS----CCCSCEEEEEEEETTTEEEEEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCc----cccceEEEEEEEcCCCCcEEEEEcCCCCEEE
Confidence 999999999999999999999999999999999999999987665 99999999999996 7899999999999999
Q ss_pred cCEEEeCCCchhHHHHHHhhhcC-------CCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCCEEEcCHHHHHHH
Q psy5094 164 FDAKAIGSGSEGAQQSLQEVYHE-------SMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLYSKEELEEE 236 (251)
Q Consensus 164 ~~~~a~G~g~~~~~~~Le~~~~~-------~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~~~~~~~~ei~~~ 236 (251)
++++++|+|++.++++||+.|++ +||++||++++++||..+.++|.++++++|++|++++ +++++++||+++
T Consensus 157 ~~~~a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd~s~~~iev~vi~~~g-~~~l~~~ei~~~ 235 (243)
T 1ryp_A 157 YKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDK-FFTLSAENIEER 235 (243)
T ss_dssp BSEEEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCCCCTTSEEEEEEETTE-EEECCHHHHHHH
T ss_pred EEEEEECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCC-eEECCHHHHHHH
Confidence 99999999999999999999999 9999999999999999999998888899999999995 999999999999
Q ss_pred HHhhcc
Q psy5094 237 LSKVSS 242 (251)
Q Consensus 237 ~~~~~~ 242 (251)
++.+++
T Consensus 236 ~~~~~~ 241 (243)
T 1ryp_A 236 LVAIAE 241 (243)
T ss_dssp HHHHTT
T ss_pred HHHhhc
Confidence 998854
No 5
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=1.4e-62 Score=414.76 Aligned_cols=231 Identities=32% Similarity=0.580 Sum_probs=222.9
Q ss_pred cCCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccchhH
Q psy5094 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLIAD 84 (251)
Q Consensus 5 ~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D 84 (251)
+++||+.+|+|||||||+|||||++++++|+|+|||+++||||||+|+|.+.+++..++.+||++|++|++|+++|..+|
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (233)
T 1iru_B 2 ERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPD 81 (233)
T ss_dssp CCCCCSBSCCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHHH
T ss_pred CCCccCCceeECCCCeEehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccHH
Confidence 68999999999999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeec
Q psy5094 85 SRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQF 164 (251)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~ 164 (251)
++.+.++++.+++.|+++++++++++.+++++++++|.|+++++. |||++++||||||++||+||.+||.|++.++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~----rP~~v~~lvaG~D~~gp~Ly~id~~G~~~~~ 157 (233)
T 1iru_B 82 YRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGV----RPFGVSLLICGWNEGRPYLFQSDPSGAYFAW 157 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTB----CCCSEEEEEEEECSSSEEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCC----CCcEEEEEEEEEeCCCCeEEEECCCCCEEEe
Confidence 999999999999999999999999999999999999999998665 9999999999999889999999999999999
Q ss_pred CEEEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCCEEEcCHHHHHHHHHhh
Q psy5094 165 DAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLYSKEELEEELSKV 240 (251)
Q Consensus 165 ~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~~~~~~~~ei~~~~~~~ 240 (251)
+++++|+|+..++++||+.|+++||++||++++++||..+.++|.++++++|++|+++ ++++++++||+++++.+
T Consensus 158 ~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~sg~~i~v~vi~~~-g~~~l~~~ei~~~~~~~ 232 (233)
T 1iru_B 158 KATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEA-GFRRLTPTEVKDYLAAI 232 (233)
T ss_dssp SEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSCCCSSSEEEEEEETT-EEEECCHHHHHHHHTTC
T ss_pred eEEEECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECC-CEEECCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999877889999999998 59999999999999765
No 6
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=1.6e-62 Score=417.67 Aligned_cols=238 Identities=28% Similarity=0.587 Sum_probs=226.3
Q ss_pred CCCCc-CCCCCCCceeCCCCcchhhhhHHHHHhc-CCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEe
Q psy5094 1 MFLTR-SEYDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAA 78 (251)
Q Consensus 1 ~~~~~-~~yd~~~~~fsp~G~l~q~eya~~a~~~-G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~ 78 (251)
|||++ ++||+.+|+|||+|||+|||||.+++++ |+|+|||+++||||||+|+|.+.+++..++.+||++|++|++|++
T Consensus 1 ~~m~~~~~yd~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~ 80 (246)
T 1iru_A 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVM 80 (246)
T ss_dssp -CCSCCCTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEE
T ss_pred CCCCccCCcCCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEE
Confidence 88876 7999999999999999999999999999 999999999999999999999987887889999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcC-CCCeEEEECC
Q psy5094 79 SGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDP 157 (251)
Q Consensus 79 sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~-~gp~Ly~id~ 157 (251)
+|..+|++.+.++++.+++.|+++++++++++.+++.+++++|.|+++.+. |||+|++||||||+ +||+||.+||
T Consensus 81 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~----rp~~v~~lvaG~D~~~gp~Ly~idp 156 (246)
T 1iru_A 81 TGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEM----RPLGCCMILIGIDEEQGPQVYKCDP 156 (246)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSB----CCCSEEEEEEEEETTTEEEEEEECT
T ss_pred eccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCC----CCcceEEEEEEEeCCCCeEEEEEcC
Confidence 999999999999999999999999999999999999999999999987655 99999999999996 7899999999
Q ss_pred CCceeecCEEEeCCCchhHHHHHHhhhcC--CCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCC-EEEcCHHHHH
Q psy5094 158 SGTYTQFDAKAIGSGSEGAQQSLQEVYHE--SMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKM-YHLYSKEELE 234 (251)
Q Consensus 158 ~G~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~-~~~~~~~ei~ 234 (251)
.|++.+++++|+|+|++.++++||+.|++ +|+++||++++++||..+.++|.++++++|++|++++. +++++++||+
T Consensus 157 ~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~sg~~i~v~vi~~~g~~~~~l~~~ei~ 236 (246)
T 1iru_A 157 AGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEID 236 (246)
T ss_dssp TSCEEEBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEETTEEEEEECCHHHHH
T ss_pred CeeEEEeeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCeEEECCHHHHH
Confidence 99999999999999999999999999999 99999999999999999999887778999999999866 8999999999
Q ss_pred HHHHhhcc
Q psy5094 235 EELSKVSS 242 (251)
Q Consensus 235 ~~~~~~~~ 242 (251)
++++.+++
T Consensus 237 ~~~~~~~~ 244 (246)
T 1iru_A 237 AHLVALAE 244 (246)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhhc
Confidence 99988853
No 7
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=5.3e-63 Score=423.82 Aligned_cols=236 Identities=41% Similarity=0.714 Sum_probs=218.6
Q ss_pred CCcCCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccch
Q psy5094 3 LTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLI 82 (251)
Q Consensus 3 ~~~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~ 82 (251)
+.+++||+.+|+|||+|||+|||||++|+++|+|+|||+++||||||+|+|.+++++..++.+||++|++|++|+++|..
T Consensus 7 ~~~~~yd~~~t~fSp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~aG~~ 86 (264)
T 3h4p_A 7 VPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLV 86 (264)
T ss_dssp ---------CCCCCSSSSCHHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEEEECS
T ss_pred CCccccCCCcceECCCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEeccch
Confidence 55789999999999999999999999999999999999999999999999999998878899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCcee
Q psy5094 83 ADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYT 162 (251)
Q Consensus 83 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~ 162 (251)
+|++.++++++.+++.|++.++++++++.+++.|++++|.|+++++. |||+|++||||||++||+||++||.|++.
T Consensus 87 aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~----rP~~v~~lvaG~D~~gp~Ly~iDp~G~~~ 162 (264)
T 3h4p_A 87 ADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGV----RPFGVSLLIAGIDKNEARLFETDPSGALI 162 (264)
T ss_dssp HHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSC----CCCSEEEEEEEEETTEEEEEEECTTCCCE
T ss_pred HHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCC----CCeeEEEEEEEEeCCcCEEEEECCCceEE
Confidence 99999999999999999999999999999999999999999998765 99999999999999899999999999999
Q ss_pred ecCEEEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCC-CEEEcCHHHHHHHHHhhc
Q psy5094 163 QFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADK-MYHLYSKEELEEELSKVS 241 (251)
Q Consensus 163 ~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~-~~~~~~~~ei~~~~~~~~ 241 (251)
+++++|+|+|+..++++|++.|+++|+++||++++++||..+.++ .++++++|++|++++ +|++++++||+++++.++
T Consensus 163 ~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~-~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~~~~ 241 (264)
T 3h4p_A 163 EYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANED-IKPENVDVCIITVKDAQFKKIPVEEIKKLIEKVK 241 (264)
T ss_dssp EESEEEESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS-CCTTSEEEEEEETTTTEEEECCTTTTGGGTTTTT
T ss_pred ecCeEEECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc-cCCCeEEEEEEEeCCCcEEECCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988 788899999999864 599999999999998887
Q ss_pred cC
Q psy5094 242 SI 243 (251)
Q Consensus 242 ~~ 243 (251)
+.
T Consensus 242 ~~ 243 (264)
T 3h4p_A 242 KK 243 (264)
T ss_dssp TS
T ss_pred Hh
Confidence 54
No 8
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=1e-61 Score=412.17 Aligned_cols=232 Identities=37% Similarity=0.634 Sum_probs=222.9
Q ss_pred CCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccC-CCccCcEEEEcCcEEEEeccchhHH
Q psy5094 7 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLME-PSSIKKIVEIDKHIGCAASGLIADS 85 (251)
Q Consensus 7 ~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~ 85 (251)
+||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+++++. +++.+||++|++|++|+++|..+|+
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 83 (244)
T 1ryp_C 4 RYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADA 83 (244)
T ss_dssp GGCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHH
T ss_pred ccCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHH
Confidence 899999999999999999999999999999999999999999999999998766 8899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEc-CCCCeEEEECCCCceeec
Q psy5094 86 RILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLD-SKGPQLFHLDPSGTYTQF 164 (251)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d-~~gp~Ly~id~~G~~~~~ 164 (251)
+.+.++++.+++.|++.++++++++.+++.+++++|.|+++.+. |||++++|||||| ++||+||.+||.|++.++
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~----rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~ 159 (244)
T 1ryp_C 84 EILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGL----RPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGW 159 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSC----CCCCEEEEEEEEETTTEEEEEEECTTCCEEEB
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCc----cceEEEEEEEEEcCCCCCEEEEECCCccEEee
Confidence 99999999999999999999999999999999999999987655 9999999999999 778999999999999999
Q ss_pred CEEEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhh-cCCCCcEEEEEEE--cCCC---EEEcCHHHHHHHHH
Q psy5094 165 DAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEE-KLNSTNVELCTVT--ADKM---YHLYSKEELEEELS 238 (251)
Q Consensus 165 ~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~-d~~~~~i~i~~i~--~~~~---~~~~~~~ei~~~~~ 238 (251)
+++|+|+|+..++++||+.|+++|+++||++++++||..+.++ +.++++++|++|+ ++++ +++++++||+++++
T Consensus 160 ~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~~~~ 239 (244)
T 1ryp_C 160 KAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILV 239 (244)
T ss_dssp SEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHH
T ss_pred eEEEECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 5677789999999 9876 99999999999999
Q ss_pred hhcc
Q psy5094 239 KVSS 242 (251)
Q Consensus 239 ~~~~ 242 (251)
.++.
T Consensus 240 ~~~~ 243 (244)
T 1ryp_C 240 KTGI 243 (244)
T ss_dssp HHTC
T ss_pred Hhhc
Confidence 8864
No 9
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=5.7e-62 Score=417.68 Aligned_cols=232 Identities=33% Similarity=0.580 Sum_probs=221.5
Q ss_pred CcCCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccchh
Q psy5094 4 TRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLIA 83 (251)
Q Consensus 4 ~~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~ 83 (251)
++++||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.++++. ++.+||++|++|++|+++|..+
T Consensus 2 ~~~~yd~~~t~fsP~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~--~~~~KI~~i~~~i~~~~aG~~a 79 (263)
T 1iru_F 2 FRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELA--AHQKKILHVDNHIGISIAGLTA 79 (263)
T ss_dssp --CTTTSCTTCCCTTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHH
T ss_pred CcCCCCCCCccCCCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccccc--cchhcEEEEcCCEEEEEeCCHH
Confidence 47999999999999999999999999999999999999999999999999999864 4779999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceee
Q psy5094 84 DSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQ 163 (251)
Q Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~ 163 (251)
|++.+.++++.+++.|++.++++++++.+++.+++++|.|+++++. |||+|++||||||++||+||++||+|++.+
T Consensus 80 D~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~----RP~~v~~lvaG~D~~gp~Ly~idp~G~~~~ 155 (263)
T 1iru_F 80 DARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGR----RPYGVGLLIAGYDDMGPHIFQTCPSANYFD 155 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTC----CCCCEEEEEEEEETTEEEEEEECSSSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhccccc----ccceEEEEEEEEcCCCCEEEEECCCCCEEE
Confidence 9999999999999999999999999999999999999999987665 999999999999998999999999999999
Q ss_pred cCEEEeCCCchhHHHHHHhhhcC--CCCHHHHHHHHHHHHHHHhhhc--CCCCcEEEEEEEcCCCEEEcCHHHHHHHHHh
Q psy5094 164 FDAKAIGSGSEGAQQSLQEVYHE--SMTLKEAINHVLTILKQVMEEK--LNSTNVELCTVTADKMYHLYSKEELEEELSK 239 (251)
Q Consensus 164 ~~~~a~G~g~~~~~~~Le~~~~~--~~s~~ea~~l~~~~l~~~~~~d--~~~~~i~i~~i~~~~~~~~~~~~ei~~~~~~ 239 (251)
++++++|+|+..++++||+.|++ +|+++||++++++||..+.++| .++++++|++|++++++++++++||++++..
T Consensus 156 ~~~~aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~~ei~~~~~~ 235 (263)
T 1iru_F 156 CRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEG 235 (263)
T ss_dssp ESEEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGGHHHHTT
T ss_pred eeEEEcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCHHHHHHHHHH
Confidence 99999999999999999999998 9999999999999999999988 5778999999999978999999999999998
Q ss_pred hc
Q psy5094 240 VS 241 (251)
Q Consensus 240 ~~ 241 (251)
++
T Consensus 236 ~~ 237 (263)
T 1iru_F 236 LE 237 (263)
T ss_dssp CC
T ss_pred Hh
Confidence 86
No 10
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=4.7e-61 Score=407.40 Aligned_cols=230 Identities=35% Similarity=0.613 Sum_probs=220.3
Q ss_pred CCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCC-CccCcEEEEcCcEEEEeccchhHH
Q psy5094 7 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEP-SSIKKIVEIDKHIGCAASGLIADS 85 (251)
Q Consensus 7 ~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~-~~~~KI~~i~~~i~~~~sG~~~D~ 85 (251)
+||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+++++.. ++.+||++|++|++|+++|..+|+
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADS 80 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHH
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHH
Confidence 6999999999999999999999999999999999999999999999999977654 589999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcC--CCCeEEEECCCCceee
Q psy5094 86 RILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS--KGPQLFHLDPSGTYTQ 163 (251)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~--~gp~Ly~id~~G~~~~ 163 (251)
+.+.++++.+++.|++.++++++++.+++++++++|.|+++++. |||++++||||||+ +||+||.+||.|++.+
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~----rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~ 156 (241)
T 1ryp_D 81 RILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGV----RPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSS 156 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTB----CCCSEEEEEEECCTTCCSCEEEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCC----CCcceeeEEEEEcCCCCCeeEEEECCCCCEEE
Confidence 99999999999999999999999999999999999999998766 99999999999997 7899999999999999
Q ss_pred cCEEEeCCCchhHHHHHHhhh---cCCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCCEEEcCHHHHHHHHHhh
Q psy5094 164 FDAKAIGSGSEGAQQSLQEVY---HESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLYSKEELEEELSKV 240 (251)
Q Consensus 164 ~~~~a~G~g~~~~~~~Le~~~---~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~~~~~~~~ei~~~~~~~ 240 (251)
++++|+|+|+..++++||+.| +++||++||++++++||..+.+ .++++++|++|++++++++++++||++++..+
T Consensus 157 ~~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~--~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~~~ 234 (241)
T 1ryp_D 157 WSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ--TGAKNIEITVVKPDSDIVALSSEEINQYVTQI 234 (241)
T ss_dssp BSEEEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC--SCSTTEEEEEEETTTEEEECCHHHHHHHHHHH
T ss_pred eeeEEECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc--CCCCcEEEEEEECCCcEEECCHHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999987 77889999999999789999999999999888
Q ss_pred cc
Q psy5094 241 SS 242 (251)
Q Consensus 241 ~~ 242 (251)
++
T Consensus 235 ~~ 236 (241)
T 1ryp_D 235 EQ 236 (241)
T ss_dssp TH
T ss_pred hh
Confidence 64
No 11
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=3.7e-61 Score=412.37 Aligned_cols=238 Identities=33% Similarity=0.577 Sum_probs=224.0
Q ss_pred cCCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccC-CCccCcEEEEcCcEEEEeccchh
Q psy5094 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLME-PSSIKKIVEIDKHIGCAASGLIA 83 (251)
Q Consensus 5 ~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~ 83 (251)
.++||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+++++. +++.+||++|++|++|+++|..+
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~a 81 (261)
T 1iru_C 2 SRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITS 81 (261)
T ss_dssp CTTTCCCTTCCCTTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHH
T ss_pred CCccCCCCccCCCCCeehHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHH
Confidence 45999999999999999999999999999999999999999999999999997655 45589999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcC-CCCeEEEECCCCcee
Q psy5094 84 DSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYT 162 (251)
Q Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~-~gp~Ly~id~~G~~~ 162 (251)
|++.++++++.+++.|++.+++++|++.+++.+++++|.|++.++. |||+|++||||||+ +||+||.+||.|++.
T Consensus 82 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~----rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~ 157 (261)
T 1iru_C 82 DANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGK----RPFGVSLLYIGWDKHYGFQLYQSDPSGNYG 157 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSC----CCCCEEEEEEEEETTTEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCc----CcceEEEEEEEEeCCCCcEEEEECCCceEE
Confidence 9999999999999999999999999999999999999999987665 99999999999994 789999999999999
Q ss_pred ecCEEEeCCCchhHHHHHHhhhcC-CCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCC---EEEcCHHHHHHHH
Q psy5094 163 QFDAKAIGSGSEGAQQSLQEVYHE-SMTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKM---YHLYSKEELEEEL 237 (251)
Q Consensus 163 ~~~~~a~G~g~~~~~~~Le~~~~~-~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~---~~~~~~~ei~~~~ 237 (251)
+++++|+|+|+..++++|++.|++ +||++||++++++||..+.++|. ++++++|++|+++++ +++++++||++++
T Consensus 158 ~~~~~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l 237 (261)
T 1iru_C 158 GWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 237 (261)
T ss_dssp ECSEEEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHH
T ss_pred eeeeEEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHH
Confidence 999999999999999999999999 99999999999999999999875 677899999999864 8999999999999
Q ss_pred HhhccCCCC
Q psy5094 238 SKVSSIHDP 246 (251)
Q Consensus 238 ~~~~~~~~~ 246 (251)
..+.+..++
T Consensus 238 ~~~~~~~~~ 246 (261)
T 1iru_C 238 KKHEEEEAK 246 (261)
T ss_dssp HHHHTTTTT
T ss_pred HHHHhchhh
Confidence 999755444
No 12
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=3.9e-61 Score=410.72 Aligned_cols=237 Identities=32% Similarity=0.488 Sum_probs=224.3
Q ss_pred CCcCCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccch
Q psy5094 3 LTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLI 82 (251)
Q Consensus 3 ~~~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~ 82 (251)
.+.++||+.+|+|||+|||+|||||.+|+++|+|+|||+++||||||+|+|.+++++..++.+||++|++|++|+++|..
T Consensus 2 ~~~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~ 81 (254)
T 1iru_G 2 SIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLL 81 (254)
T ss_dssp CCCSSTTSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEECH
T ss_pred CcccccCCCCccCCcCCccHHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecCh
Confidence 35789999999999999999999999999999999999999999999999999987667888999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEc-CCCCeEEEECCCCce
Q psy5094 83 ADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLD-SKGPQLFHLDPSGTY 161 (251)
Q Consensus 83 ~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d-~~gp~Ly~id~~G~~ 161 (251)
+|++.++++++.+++.|++++++++|++.+++.+++++|.|+++++. |||+|++|||||| ++||+||++||.|++
T Consensus 82 aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~----rP~~v~~lvaG~D~~~gp~Ly~idp~G~~ 157 (254)
T 1iru_G 82 ADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAV----RPFGCSFMLGSYSVNDGAQLYMIDPSGVS 157 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSB----CCCSEEEEEEEEETTTEEEEEEECTTCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccccc----ccceEEEEEEEEeCCCCcEEEEEcCCCCE
Confidence 99999999999999999999999999999999999999999988766 9999999999999 778999999999999
Q ss_pred eecCEEEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcC--CCEEEcCHHHHHHHHH
Q psy5094 162 TQFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTAD--KMYHLYSKEELEEELS 238 (251)
Q Consensus 162 ~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~--~~~~~~~~~ei~~~~~ 238 (251)
.+++++++|+|+..++++|++.|+++|+++||+++++++|+.+.+++. ++.+++|++|+++ +++++++++|++++++
T Consensus 158 ~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~ 237 (254)
T 1iru_G 158 YGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEK 237 (254)
T ss_dssp EEBSEEEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHH
T ss_pred EeeeeEEecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988775 6668999999987 5599999999999998
Q ss_pred hhccC
Q psy5094 239 KVSSI 243 (251)
Q Consensus 239 ~~~~~ 243 (251)
.+++.
T Consensus 238 ~~~~~ 242 (254)
T 1iru_G 238 YAKES 242 (254)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87643
No 13
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=6.6e-61 Score=408.01 Aligned_cols=230 Identities=36% Similarity=0.659 Sum_probs=221.0
Q ss_pred CCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccchhHHHH
Q psy5094 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLIADSRI 87 (251)
Q Consensus 8 yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 87 (251)
||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+++++..++.+||++|++|++|+++|..+|++.
T Consensus 3 yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~ 82 (248)
T 1iru_D 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARI 82 (248)
T ss_dssp CCCCCSCCCTTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHHH
T ss_pred ccCCCceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEc-CCCCeEEEECCCCceeecCE
Q psy5094 88 LTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLD-SKGPQLFHLDPSGTYTQFDA 166 (251)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d-~~gp~Ly~id~~G~~~~~~~ 166 (251)
+.++++.+++.|++.++++++++.+++++++++|.|+++++. |||+|++|||||| ++||+||.+||.|++.++++
T Consensus 83 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~----rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~ 158 (248)
T 1iru_D 83 VINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGR----RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKA 158 (248)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTB----CCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCc----ccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeE
Confidence 999999999999999999999999999999999999998766 9999999999999 77899999999999999999
Q ss_pred EEeCCCchhHHHHHHhhhcCCC--CHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCCEEEcCHHHHHHHHHhhccC
Q psy5094 167 KAIGSGSEGAQQSLQEVYHESM--TLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLYSKEELEEELSKVSSI 243 (251)
Q Consensus 167 ~a~G~g~~~~~~~Le~~~~~~~--s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~~~~~~~~ei~~~~~~~~~~ 243 (251)
+++|+|+..++++||+.|+++| +++||++++++||..+.+ .++++++|++|++++++++++++||++++..+++.
T Consensus 159 ~aiG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~--~sg~~i~v~vi~~~g~~~~l~~~ei~~~~~~~~~~ 235 (248)
T 1iru_D 159 NAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ--SGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKE 235 (248)
T ss_dssp EEESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC--TTSTTCCEEEEESSSCEECCCHHHHHHHTTTTTTT
T ss_pred EEECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc--CCCCcEEEEEEECCCcEEECCHHHHHHHHHHHHhc
Confidence 9999999999999999999999 999999999999999887 46778999999999779999999999999888644
No 14
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=8.9e-62 Score=409.90 Aligned_cols=227 Identities=33% Similarity=0.569 Sum_probs=215.1
Q ss_pred CcCCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccchh
Q psy5094 4 TRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLIA 83 (251)
Q Consensus 4 ~~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~ 83 (251)
++++||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.++++. ++.+||++|++|++|+++|..+
T Consensus 1 ~~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~--~~~~Ki~~i~~~i~~~~aG~~a 78 (233)
T 1ryp_F 1 FRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELS--SYQKKIIKCDEHMGLSLAGLAP 78 (233)
T ss_dssp CHHHHSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHH
T ss_pred CCCcccCCCccCCCCCeehHHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccccc--cccCcEEEEcCCEEEEEEechH
Confidence 46789999999999999999999999999999999999999999999999998864 4779999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceee
Q psy5094 84 DSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQ 163 (251)
Q Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~ 163 (251)
|++.+.++++.+++.|++.+++++|++.+++.+++++|.|+|+.+. |||+|++||||||++||+||++||.|++.+
T Consensus 79 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~----rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~ 154 (233)
T 1ryp_F 79 DARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGG----RPYGVGLLIIGYDKSGAHLLEFQPSGNVTE 154 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTC----CCCCEEEEEEEEETTEEEEEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCC----cCcceEEEEEEEeCCcCEEEEECCCCCeee
Confidence 9999999999999999999999999999999999999999987665 899999999999998999999999999999
Q ss_pred cCEEEeCCCchhHHHHHHhhhcC--CC--CHHHHHHHHHHHHHHHhhhc-CCCCcEEEEEEEcCCCEEEcCHHHHHHH
Q psy5094 164 FDAKAIGSGSEGAQQSLQEVYHE--SM--TLKEAINHVLTILKQVMEEK-LNSTNVELCTVTADKMYHLYSKEELEEE 236 (251)
Q Consensus 164 ~~~~a~G~g~~~~~~~Le~~~~~--~~--s~~ea~~l~~~~l~~~~~~d-~~~~~i~i~~i~~~~~~~~~~~~ei~~~ 236 (251)
++++|+|+|++.++++||+.|++ +| |++||+++++++|..+.+++ .++.+++|++|++++++++++++||+++
T Consensus 155 ~~~~aiG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~~d~~~s~~~i~v~vi~~~~~~~~l~~~ei~~~ 232 (233)
T 1ryp_F 155 LYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKY 232 (233)
T ss_dssp ESEEEESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSCCSSCCCTTTEEEEEEETTEEEEEEEGGGGGGG
T ss_pred eeEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEECCCCEEECCHHHHHhh
Confidence 99999999999999999999999 99 99999999999999998332 4788999999999978999999999765
No 15
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=1.1e-60 Score=405.43 Aligned_cols=234 Identities=57% Similarity=0.887 Sum_probs=221.3
Q ss_pred CCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccchhHHHHH
Q psy5094 9 DRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLIADSRIL 88 (251)
Q Consensus 9 d~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l 88 (251)
|+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+++++..++.+||++|++|++|+++|..+|++.+
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 80 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSM 80 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHHH
T ss_pred CCCCceECCCCcChHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHHH
Confidence 78999999999999999999999999999999999999999999999987668889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCcccc--ccccCCcceeeEEEEEc-CCCCeEEEECCCCceeecC
Q psy5094 89 TDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEE--SAMSRPFGVAMLFAGLD-SKGPQLFHLDPSGTYTQFD 165 (251)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~--~~~~rP~~~~~lv~G~d-~~gp~Ly~id~~G~~~~~~ 165 (251)
.++++.+++.|++.++++++++.+++.+++++|.|+++.+. ++|.|||++++|||||| ++||+||.+||.|++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~ 160 (242)
T 1ryp_E 81 IEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYN 160 (242)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBS
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccC
Confidence 99999999999999999999999999999999999988761 22349999999999999 7789999999999999999
Q ss_pred EEEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCCEEEcCHHHHHHHHHhhcc
Q psy5094 166 AKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKMYHLYSKEELEEELSKVSS 242 (251)
Q Consensus 166 ~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~~~~~~~~ei~~~~~~~~~ 242 (251)
++++|+|+..++++||+.|+++||++||++++++||..+.++..++.+++|++|++++.+++++++||+++++.+++
T Consensus 161 ~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~ei~~~~~~~~~ 237 (242)
T 1ryp_E 161 AKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELIKELKE 237 (242)
T ss_dssp EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEEETTTEEEECCHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCeEECCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998866788999999999977999999999999988864
No 16
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=2.8e-60 Score=410.62 Aligned_cols=232 Identities=34% Similarity=0.568 Sum_probs=213.6
Q ss_pred CCCCcCCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEecc
Q psy5094 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASG 80 (251)
Q Consensus 1 ~~~~~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG 80 (251)
|-.+.++||+++|+|||+|||+|||||++|+++|+|+|||+++||||||+|+|.+++++..+..+||++|++|++|+++|
T Consensus 1 m~~~~~~yd~~~t~fSP~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG 80 (288)
T 3nzj_F 1 MTSIGTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSG 80 (288)
T ss_dssp ----CCCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEE
T ss_pred CCCCcCCccCCcccCCCCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecC
Confidence 66788999999999999999999999999999999999999999999999999999877666789999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCc
Q psy5094 81 LIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGT 160 (251)
Q Consensus 81 ~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~ 160 (251)
+.+|++.|+++++.+++.|++.++++++++.++++|++++|.|+++.+. |||+|++||||||++||+||++||.|+
T Consensus 81 ~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~----rP~gv~~lvaG~D~~Gp~Ly~iDp~G~ 156 (288)
T 3nzj_F 81 LIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSV----RPFGVSTIFGGVDKNGAHLYMLEPSGS 156 (288)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTB----CCCCEEEEEEEEETTEEEEEEECTTSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccC----CCceEEEEEEEEeCCCCEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999997655 999999999999999999999999999
Q ss_pred eeecCEEEeCCCchhHHHHHHhh---hcCCCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEc--CCC-EEEcCHHHH
Q psy5094 161 YTQFDAKAIGSGSEGAQQSLQEV---YHESMTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTA--DKM-YHLYSKEEL 233 (251)
Q Consensus 161 ~~~~~~~a~G~g~~~~~~~Le~~---~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~--~~~-~~~~~~~ei 233 (251)
+.+++++++|+|++.++++|++. |+++||++||++++++||..+.+++. ++.+++|++|++ +++ +++++.+++
T Consensus 157 ~~~~~~~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~ 236 (288)
T 3nzj_F 157 YWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLL 236 (288)
T ss_dssp EEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHH
T ss_pred EEEcCEEEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHH
Confidence 99999999999999999999999 99999999999999999999999875 566899999999 344 456666665
Q ss_pred HHH
Q psy5094 234 EEE 236 (251)
Q Consensus 234 ~~~ 236 (251)
++.
T Consensus 237 ~~~ 239 (288)
T 3nzj_F 237 QEA 239 (288)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 17
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=5.9e-60 Score=402.68 Aligned_cols=231 Identities=32% Similarity=0.550 Sum_probs=219.6
Q ss_pred cCCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccchhH
Q psy5094 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLIAD 84 (251)
Q Consensus 5 ~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D 84 (251)
.++||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|+|.+.+++..++.+||++|++|++|+++|..+|
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (250)
T 1ryp_B 2 TDRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPD 81 (250)
T ss_dssp CCCCCSBSSCBCTTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHH
T ss_pred CCcccCCceeECCCCccHHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCHHH
Confidence 35999999999999999999999999999999999999999999999999877887889999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcC-CCCeEEEECCCCcee
Q psy5094 85 SRILTDRARVECAN-HWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYT 162 (251)
Q Consensus 85 ~~~l~~~~~~~~~~-~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~-~gp~Ly~id~~G~~~ 162 (251)
++.+.++++.+++. |++.++.+++++.+++.+++++++++++.+. |||++++||||||+ +||+||.+||.|++.
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~----rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~ 157 (250)
T 1ryp_B 82 YRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGV----RPFGVSLLIAGHDEFNGFSLYQVDPSGSYF 157 (250)
T ss_dssp HHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTB----CCCCEEEEEEEEETTTEEEEEEECTTSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCc----ccceEEEEEEEEcCCCCcEEEEECCCCCEE
Confidence 99999999999999 9999999999999999999999999987655 99999999999996 689999999999999
Q ss_pred ecCEEEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcC---------------CCEEE
Q psy5094 163 QFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTAD---------------KMYHL 227 (251)
Q Consensus 163 ~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~---------------~~~~~ 227 (251)
+++++|+|+|+..++++||+.|+++||++||++++++||..+.+++.++++++|++|+++ .+|++
T Consensus 158 ~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~ 237 (250)
T 1ryp_B 158 PWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRK 237 (250)
T ss_dssp EBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSCCSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEE
T ss_pred eeceeEecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhccccCCCCEEEEEEEccccccccccccccCCCCCeEE
Confidence 999999999999999999999999999999999999999999988778889999999986 23999
Q ss_pred cCHHHHHHHHHh
Q psy5094 228 YSKEELEEELSK 239 (251)
Q Consensus 228 ~~~~ei~~~~~~ 239 (251)
++++||+++++.
T Consensus 238 l~~~ei~~~l~~ 249 (250)
T 1ryp_B 238 LTSQEINDRLEA 249 (250)
T ss_dssp CCHHHHHHHHTT
T ss_pred CCHHHHHHHHHh
Confidence 999999999865
No 18
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=3.1e-59 Score=396.80 Aligned_cols=232 Identities=35% Similarity=0.586 Sum_probs=215.4
Q ss_pred cCCCCCCCceeCCCCcchhhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccchhH
Q psy5094 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLIAD 84 (251)
Q Consensus 5 ~~~yd~~~~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D 84 (251)
.++||+++|+|||+|||+|||||.+|+++|+|+|||+++||||||+|+|.+++++..+..+||++|++|++|+++|..+|
T Consensus 1 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD 80 (244)
T 1ryp_G 1 GTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPD 80 (244)
T ss_dssp CCCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHHH
T ss_pred CCCccCCcccCCcCCchHHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHHH
Confidence 36899999999999999999999999999999999999999999999999998766556699999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeec
Q psy5094 85 SRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQF 164 (251)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~ 164 (251)
++.+.++++.+++.|+++++++++++.+++++++++|.|+++++. |||++++||||||++||+||.+||.|++.++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~----rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~ 156 (244)
T 1ryp_G 81 GRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSV----RPFGVSTIFGGVDKNGAHLYMLEPSGSYWGY 156 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTB----CCCCEEEEEEEEETTEEEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCc----cCceEEEEEEEEeCCcCEEEEECCCCCEEEe
Confidence 999999999999999999999999999999999999999998655 9999999999999889999999999999999
Q ss_pred CEEEeCCCchhHHHHHHhh---hcCCCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEc-C-CCEEEcCHHHHHHHHH
Q psy5094 165 DAKAIGSGSEGAQQSLQEV---YHESMTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTA-D-KMYHLYSKEELEEELS 238 (251)
Q Consensus 165 ~~~a~G~g~~~~~~~Le~~---~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~-~-~~~~~~~~~ei~~~~~ 238 (251)
+++++|+|++.++++||+. |+++||++||++++++||..+.+++. ++.+++|++|++ + .+++++.++++.+..+
T Consensus 157 ~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~~~~~~~~~~ 236 (244)
T 1ryp_G 157 KGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAI 236 (244)
T ss_dssp SEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTHHHHHHH
T ss_pred eEEEECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeChHHHHHHHH
Confidence 9999999999999999997 99999999999999999999999987 567899999997 1 2567777777766555
Q ss_pred hh
Q psy5094 239 KV 240 (251)
Q Consensus 239 ~~ 240 (251)
+.
T Consensus 237 ~~ 238 (244)
T 1ryp_G 237 DF 238 (244)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=1.3e-51 Score=352.51 Aligned_cols=218 Identities=20% Similarity=0.348 Sum_probs=196.3
Q ss_pred CceeCCCCcch-hhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccchhHHHHHHH
Q psy5094 12 VNTFSPEGRLF-QVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLIADSRILTD 90 (251)
Q Consensus 12 ~~~fsp~G~l~-q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~ 90 (251)
+.-|||+|++. |||||.+++++|+|+|||+++||||||+|+| +++.+||++|++|++|+++|..+|++.|++
T Consensus 4 p~~~sPe~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r-------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~ 76 (259)
T 1q5q_A 4 PYYASAEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP-------STALHKVSELYDRLGFAAVGKYNEFENLRR 76 (259)
T ss_dssp -----CHHHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS-------CSSSCSEEEEETTEEEEEEECHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC-------CCCcCcEEEeCCCEEEEEccCHHHHHHHHH
Confidence 45789999995 9999999999999999999999999999999 467899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhC-CCCCHHHHHHHHHH-HHHHhcCccccccccCCcceeeEEEEEc----CCCCeEEEECCCCcee-e
Q psy5094 91 RARVECANHWFTYD-EKMDIESVAQAVSN-LAIQFGDSDEESAMSRPFGVAMLFAGLD----SKGPQLFHLDPSGTYT-Q 163 (251)
Q Consensus 91 ~~~~~~~~~~~~~~-~~i~~~~l~~~ls~-~~~~~~~~~~~~~~~rP~~~~~lv~G~d----~~gp~Ly~id~~G~~~-~ 163 (251)
+++.+++.|++.++ ++++++.+++.+++ +.|.|+. + .|||+|++|||||| .+||+||++||+|++. +
T Consensus 77 ~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~----~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~ 150 (259)
T 1q5q_A 77 AGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE--Q----PKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDE 150 (259)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--S----SSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEE
T ss_pred HHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhcc--C----CCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeC
Confidence 99999999999988 49999999999999 6666763 2 39999999999999 7889999999999999 7
Q ss_pred cCEEEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHh-----hhcCCCCcEEEEEEEcCC---CEEEcCHHHHHH
Q psy5094 164 FDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVM-----EEKLNSTNVELCTVTADK---MYHLYSKEELEE 235 (251)
Q Consensus 164 ~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~-----~~d~~~~~i~i~~i~~~~---~~~~~~~~ei~~ 235 (251)
++++++|+|+..++++|++.|+++|+++||++++++||..+. ++|+++.+++|++|++++ +|++++++||++
T Consensus 151 ~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~sg~~iev~vi~~~~~~~~~~~l~~~ei~~ 230 (259)
T 1q5q_A 151 QHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQ 230 (259)
T ss_dssp SSEEEESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------CCSSCSEEEEEETTSSSCCEEECCHHHHHT
T ss_pred CCEEEECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccCCCCcEEEEEEECCCCcCCeEECCHHHHHH
Confidence 899999999999999999999999999999999999999998 788877889999999996 799999999999
Q ss_pred HHHhhcc
Q psy5094 236 ELSKVSS 242 (251)
Q Consensus 236 ~~~~~~~ 242 (251)
++..+.+
T Consensus 231 ~~~~~~~ 237 (259)
T 1q5q_A 231 LVPAEPA 237 (259)
T ss_dssp TSCCC--
T ss_pred HHHHhhh
Confidence 9887764
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=8.3e-50 Score=338.64 Aligned_cols=214 Identities=21% Similarity=0.363 Sum_probs=191.7
Q ss_pred CCCCcch-hhhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCcccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHH
Q psy5094 16 SPEGRLF-QVEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSVLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARV 94 (251)
Q Consensus 16 sp~G~l~-q~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~ 94 (251)
||+.-+. ++|||.+|+++|+|+|||+++||||||+|+| .++.+||++|++|++|+++|..+|++.|.+.++.
T Consensus 8 ~p~~~~~~r~EYA~~av~~GtT~vgi~~kdgVVlaadkr-------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~ 80 (248)
T 3mi0_A 8 SPEQAMRERSELARKGIARAKSVVALAYAGGVLFVAENP-------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQ 80 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCCEEEEEETTEEEEEEECC-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHH
T ss_pred CHHHhcccchHHHHHHHhCCCcEEEEEeCCEEEEEEeCC-------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHH
Confidence 5665554 7999999999999999999999999999999 4688999999999999999999999999999999
Q ss_pred HHHHHHhhhC-CCCCHHHHHHHHH-HHHHHhcCccccccccCCcceeeEEEEEcC----CCCeEEEECCCCceee-cCEE
Q psy5094 95 ECANHWFTYD-EKMDIESVAQAVS-NLAIQFGDSDEESAMSRPFGVAMLFAGLDS----KGPQLFHLDPSGTYTQ-FDAK 167 (251)
Q Consensus 95 ~~~~~~~~~~-~~i~~~~l~~~ls-~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~----~gp~Ly~id~~G~~~~-~~~~ 167 (251)
+++.|++.++ .+++++.++++++ .+.|.|++ + .|||+|++||||||+ +||+||++||+|++.+ ++++
T Consensus 81 ~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~----~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~ 154 (248)
T 3mi0_A 81 FADTRGYAYDRRDVTGRQLANVYAQTLGTIFTE--Q----AKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFV 154 (248)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--S----SSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEE
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcc--C----CCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEE
Confidence 9999999999 8999999999999 67788886 2 299999999999998 7899999999999995 9999
Q ss_pred EeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHh-------hhcCCCCcEEEEEEEcCCC---EEEcCHHHHHHHH
Q psy5094 168 AIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVM-------EEKLNSTNVELCTVTADKM---YHLYSKEELEEEL 237 (251)
Q Consensus 168 a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~-------~~d~~~~~i~i~~i~~~~~---~~~~~~~ei~~~~ 237 (251)
|+|+|++.++++||+.|+++|+++||++++++||+.+. ++++++++++|++|++++. |++++++||++++
T Consensus 155 a~Gsgs~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l 234 (248)
T 3mi0_A 155 VMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDANRPRRAFRRITGSALQALL 234 (248)
T ss_dssp EESSCHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC------------CCTTEEEEEEETTSSSCCEEECCHHHHHHTC
T ss_pred EECccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccccCCCcEEEEEEECCCCcccEEECCHHHHHHHH
Confidence 99999999999999999999999999999999999998 6678889999999999953 9999999999999
Q ss_pred Hhhcc
Q psy5094 238 SKVSS 242 (251)
Q Consensus 238 ~~~~~ 242 (251)
.++..
T Consensus 235 ~~~~~ 239 (248)
T 3mi0_A 235 VDQES 239 (248)
T ss_dssp -----
T ss_pred HHcCC
Confidence 87653
No 21
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=1.5e-47 Score=319.68 Aligned_cols=206 Identities=25% Similarity=0.426 Sum_probs=189.9
Q ss_pred HHHhcCCcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCC
Q psy5094 29 EAIKLGSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKM 107 (251)
Q Consensus 29 ~a~~~G~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 107 (251)
+++++|+|+|||+++||||||+|+|.++ +++.+++.+||++|+++++|+++|..+|++.+.++++.+++.|++++++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (217)
T 1yar_H 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNM 82 (217)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 4678999999999999999999999998 577788999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhcCC
Q psy5094 108 DIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHES 187 (251)
Q Consensus 108 ~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ 187 (251)
|++.+++.+++.+|.++ .|||++++|||||| +||+||.+||.|++.+++++|+|+|++.++++||+.|+++
T Consensus 83 ~v~~la~~l~~~~~~~r--------~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ 153 (217)
T 1yar_H 83 PIEAVATLLSNMLNQVK--------YMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEK 153 (217)
T ss_dssp CHHHHHHHHHHHHHHTT--------TSCCCEEEEEEEES-SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTT
T ss_pred CHHHHHHHHHHHHHhcC--------CCCceEEEEEEEEC-CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccC
Confidence 99999999999998753 28999999999999 8999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEcCHHHHHHHHHhhccC
Q psy5094 188 MTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLYSKEELEEELSKVSSI 243 (251)
Q Consensus 188 ~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~~~~ei~~~~~~~~~~ 243 (251)
||++||++++++||..+.++|. ++++++|++|+++.++++++++||+++++.++-.
T Consensus 154 ~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~~~~ei~~~~~~~~~~ 210 (217)
T 1yar_H 154 MTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLGLI 210 (217)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEEcCHHHHHHHHHHHHHH
Confidence 9999999999999999999986 6778999999995589999999999999988743
No 22
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.6e-47 Score=318.55 Aligned_cols=201 Identities=26% Similarity=0.377 Sum_probs=189.5
Q ss_pred CCcEEEEEeCCeEEEEEeccCCCc-ccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHH
Q psy5094 34 GSTAIGISTSEGVVLAAEKRITSV-LMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESV 112 (251)
Q Consensus 34 G~tvvgi~~~~gVvla~d~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 112 (251)
|+|+|||+++||||||+|+|.+++ ++..++.+||++|++|++|+++|..+|++.++++++.+++.|++.++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 799999999999999999999985 6668899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccccccccCCcceeeEEEEEcC-CCCeEEEECCCCceeecC-EEEeCCCchhHHHHHHhhhcCCCCH
Q psy5094 113 AQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQFD-AKAIGSGSEGAQQSLQEVYHESMTL 190 (251)
Q Consensus 113 ~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~-~gp~Ly~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~ 190 (251)
++++++++|.++. |||++++||||||+ +||+||.+||.|++.+++ ++++|+|++.++++||+.|+++|++
T Consensus 81 a~~l~~~~~~~~~--------~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~ 152 (219)
T 3h4p_a 81 ATLLSNILHSSRM--------FPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSV 152 (219)
T ss_dssp HHHHHHHHHHTTT--------TTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCH
T ss_pred HHHHHHHHHHhcC--------CCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCH
Confidence 9999999988732 89999999999997 789999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEcCHHHHHHHHHhhccC
Q psy5094 191 KEAINHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLYSKEELEEELSKVSSI 243 (251)
Q Consensus 191 ~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~~~~ei~~~~~~~~~~ 243 (251)
+||++++++||..+.++|. ++++++|++|+++ ++++++++||++++..++..
T Consensus 153 eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~-g~~~l~~~ei~~~l~~~~~~ 205 (219)
T 3h4p_a 153 EEGIKLALNALKSAMERDTFSGNGISLAVITKD-GVKIFEDEEIEKILDSMKAK 205 (219)
T ss_dssp HHHHHHHHHHHHHHHTSCSSCCSCCCEEEEETT-EEEECCHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCC-CeEEcCHHHHHHHHHHhhcc
Confidence 9999999999999999986 6678999999998 79999999999999999843
No 23
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=1.4e-46 Score=310.48 Aligned_cols=198 Identities=26% Similarity=0.441 Sum_probs=188.4
Q ss_pred CcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVA 113 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 113 (251)
+|+|||+++||||||+|+|.++ +++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++++++++|++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999998 577788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeecC-EEEeCCCchhHHHHHHhhhcCCCCHHH
Q psy5094 114 QAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFD-AKAIGSGSEGAQQSLQEVYHESMTLKE 192 (251)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~s~~e 192 (251)
+.+++++|.++ .|||++++||||||++||+||.+||.|++.+++ ++|+|+|+++++++||+.|+++||++|
T Consensus 81 ~~l~~~~~~~r--------~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~ee 152 (202)
T 1j2q_H 81 TLTSNLLNSYR--------YFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDE 152 (202)
T ss_dssp HHHHHHHHHTT--------TSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHhhC--------CCCceEEEEEEEEeCCCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHH
Confidence 99999998753 289999999999999899999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEcCHHHHHHHHHhhc
Q psy5094 193 AINHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLYSKEELEEELSKVS 241 (251)
Q Consensus 193 a~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~~~~ei~~~~~~~~ 241 (251)
|++++++||..+.++|. ++++++|++|+++ ++++++++|++++++.++
T Consensus 153 a~~la~~al~~~~~~d~~s~~~i~v~vi~~~-g~~~l~~~ei~~~~~~~~ 201 (202)
T 1j2q_H 153 AVELAVRAIYSAMKRDSASGDGIDVVKITED-EFYQYSPEEVEQILAKFR 201 (202)
T ss_dssp HHHHHHHHHHHHHTTCTTSCSCEEEEEECSS-CEEECHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEEEEeCC-CeEEeCHHHHHHHHHHhh
Confidence 99999999999999986 6778999999998 799999999999998775
No 24
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=8.8e-47 Score=326.07 Aligned_cols=218 Identities=21% Similarity=0.320 Sum_probs=189.6
Q ss_pred CCCCcchhh------hhHHHHHhcCCcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcCcEEEEeccchhHHHHH
Q psy5094 16 SPEGRLFQV------EYAIEAIKLGSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRIL 88 (251)
Q Consensus 16 sp~G~l~q~------eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l 88 (251)
||+.-+.+. .++..++++|+|+|||+++||||||+|+|.++ .++..++.+||++|+++++|+++|..+|++.+
T Consensus 51 ~p~~~~~~~~~~~~~~~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l 130 (287)
T 3nzj_K 51 SPQQFLRAHTDDSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFW 130 (287)
T ss_dssp -------------------------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHH
T ss_pred CHHHHHHHhcccccccchhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHH
Confidence 455555433 26788999999999999999999999999998 56778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEc-CCCCeEEEECCCCceeecCEE
Q psy5094 89 TDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLD-SKGPQLFHLDPSGTYTQFDAK 167 (251)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d-~~gp~Ly~id~~G~~~~~~~~ 167 (251)
.++++.+++.|+++++++++++.+++++++++|.|++ +||++++|||||| ++||+||.+||.|++.+++++
T Consensus 131 ~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~--------~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~ 202 (287)
T 3nzj_K 131 ETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG--------AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIF 202 (287)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT--------SCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEE
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcC--------CCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeE
Confidence 9999999999999999999999999999999998876 6999999999999 678999999999999999999
Q ss_pred EeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEcCHHHHHHHHHhhcc
Q psy5094 168 AIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLYSKEELEEELSKVSS 242 (251)
Q Consensus 168 a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~~~~ei~~~~~~~~~ 242 (251)
|+|+|+..++++||+.|+++||++||++++++||..+.++|. ++++++|++|+++ ++++++++||++++.++++
T Consensus 203 AiGsgs~~a~~~Le~~y~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkd-g~~~l~~~ev~~~l~~~~e 277 (287)
T 3nzj_K 203 CVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTED-GWIYHGNHDVGELFWKVKE 277 (287)
T ss_dssp EESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETT-EEEEEEEEEHHHHHHHHHH
T ss_pred EEecchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCC-CEEEeCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997 6678999999998 7999999999998777764
No 25
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=3.4e-46 Score=323.21 Aligned_cols=232 Identities=15% Similarity=0.144 Sum_probs=174.5
Q ss_pred cCCCCCCCceeCCCCcc-----hh--hhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCCc-ccCCCccCcEEEEcCcEEE
Q psy5094 5 RSEYDRGVNTFSPEGRL-----FQ--VEYAIEAIKLGSTAIGISTSEGVVLAAEKRITSV-LMEPSSIKKIVEIDKHIGC 76 (251)
Q Consensus 5 ~~~yd~~~~~fsp~G~l-----~q--~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~~-~~~~~~~~KI~~i~~~i~~ 76 (251)
.++|+......+|+.-- +| +|||++ +++|+|+|||+++||||||+|+|.+++ ++.+++.+||++|++|++|
T Consensus 22 ~~~f~~~~~~~~~~~l~~~~~~~~~~~~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~ 100 (291)
T 2jay_A 22 LSSFTDFLRRQAPELLPASISGGAPLAGGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTAT 100 (291)
T ss_dssp -------------------------------------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEE
T ss_pred CccHHHHhhhcChhhccccccccCcCcccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEE
Confidence 35677777788777432 22 699999 999999999999999999999999985 6668899999999999999
Q ss_pred EeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCC-C-----C
Q psy5094 77 AASGLIADSRILTDRARVECANHWFTYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSK-G-----P 150 (251)
Q Consensus 77 ~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~-g-----p 150 (251)
+++|..+|++.+.++++.+++.|++.++++++++.+++.+++++|.+++ ..+ |||+|++||||||++ + |
T Consensus 101 ~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~~~----rpf~v~~lvaG~D~~g~~~~~~p 175 (291)
T 2jay_A 101 GIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAM----QGLLALPLLAGYDIHASDPQSAG 175 (291)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-HHH----HTCCCEEEEEEECTTCSCSTTCE
T ss_pred EEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-hhc----cccceeEEEEEEeCCCCcCCCCC
Confidence 9999999999999999999999999999999999999999999988754 233 899999999999975 4 8
Q ss_pred eEEEECCCCcee--ecCEEEeCCCchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcCCCCcE--------EEEEEE
Q psy5094 151 QLFHLDPSGTYT--QFDAKAIGSGSEGAQQSLQEVYHESMTLKEAINHVLTILKQVMEEKLNSTNV--------ELCTVT 220 (251)
Q Consensus 151 ~Ly~id~~G~~~--~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i--------~i~~i~ 220 (251)
+||++||+|++. +++++++|+|+.+++++|++.|+++|+++||++++++||+.+.++|...+++ +|++|+
T Consensus 176 ~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~ 255 (291)
T 2jay_A 176 RIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIID 255 (291)
T ss_dssp EEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEE
T ss_pred EEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEE
Confidence 999999999999 8999999999999999999999999999999999999999999998865555 699999
Q ss_pred cCCCEEEcCHHHHHHHHHhhccC
Q psy5094 221 ADKMYHLYSKEELEEELSKVSSI 243 (251)
Q Consensus 221 ~~~~~~~~~~~ei~~~~~~~~~~ 243 (251)
++ ++++++++||++++..+.+.
T Consensus 256 ~d-g~~~l~~~ei~~~~~~~~~~ 277 (291)
T 2jay_A 256 AD-GAVDVPESRIAELARAIIES 277 (291)
T ss_dssp TT-EEEECCHHHHHHHHHHC---
T ss_pred CC-CeEEcCHHHHHHHHHHHHHh
Confidence 98 79999999999999988643
No 26
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=3.8e-46 Score=308.31 Aligned_cols=199 Identities=20% Similarity=0.318 Sum_probs=189.8
Q ss_pred CcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVA 113 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 113 (251)
+|+|||+++||||||+|+|.++ +++..++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999998 577788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhcCCCCHHHH
Q psy5094 114 QAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEA 193 (251)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 193 (251)
+.+++.+|.+++ +||++++||||||++||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||
T Consensus 81 ~~l~~~~~~~r~--------~~~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea 152 (204)
T 1iru_L 81 KLLANMVYQYKG--------MGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQA 152 (204)
T ss_dssp HHHHHHHHTTTT--------SCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHH
T ss_pred HHHHHHHHHhCC--------CCeeEEEEEEEEeCCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHH
Confidence 999999988765 799999999999998999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEcCHHHHHHHHHhhcc
Q psy5094 194 INHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLYSKEELEEELSKVSS 242 (251)
Q Consensus 194 ~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~~~~ei~~~~~~~~~ 242 (251)
++++++||..+.++|. ++++++|++|+++ ++++++++|+++++.+++.
T Consensus 153 ~~l~~~al~~~~~rd~~s~~~i~v~vi~~~-g~~~l~~~ei~~~~~~~~~ 201 (204)
T 1iru_L 153 YDLARRAIYQATYRDAYSGGAVNLYHVRED-GWIRVSSDNVADLHEKYSG 201 (204)
T ss_dssp HHHHHHHHHHHHHHBTTCCSEEEEEEECSS-CEEEEEEEEHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCccCCCceEEEEEeCC-ceEEeCHHHHHHHHHHhcc
Confidence 9999999999999986 7789999999997 7999999999999998854
No 27
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=6.6e-46 Score=308.67 Aligned_cols=204 Identities=20% Similarity=0.324 Sum_probs=192.5
Q ss_pred CcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVA 113 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 113 (251)
+|+|||+++||||||+|+|.++ +++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6899999999999999999998 577788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccccCCcceeeEEEEEc-CCCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhcCCCCHHH
Q psy5094 114 QAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLD-SKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKE 192 (251)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d-~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~e 192 (251)
+++++++|.|++ .||++++|||||| ++||+||.+||.|++.+++++|+|+|+.+++++||+.|+++||++|
T Consensus 81 ~~l~~~~~~~~~--------~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~ee 152 (212)
T 1ryp_L 81 KILSNLVYQYKG--------AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVED 152 (212)
T ss_dssp HHHHHHHHHTTT--------SCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHhhCC--------CCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHH
Confidence 999999999887 6999999999999 6689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEcCHHHHHHHHHhhccCCCCC
Q psy5094 193 AINHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLYSKEELEEELSKVSSIHDPT 247 (251)
Q Consensus 193 a~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~~~~ei~~~~~~~~~~~~~~ 247 (251)
|++++++||..+.++|. ++++++|++|+++ ++++++++|+++++.+++++.++.
T Consensus 153 a~~la~~al~~~~~rd~~s~~~i~v~vi~~~-g~~~~~~~ei~~~~~~~~~~~~~~ 207 (212)
T 1ryp_L 153 ALYLGKRSILAAAHRDAYSGGSVNLYHVTED-GWIYHGNHDVGELFWKVKEEEGSF 207 (212)
T ss_dssp HHHHHHHHHHHHHHHBTTCCSEEEEEEEETT-EEEEEEEEEHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEEEcCC-ceEEECHHHHHHHHHHHHHhhhhh
Confidence 99999999999999986 6788999999987 799999999999988887665543
No 28
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=1.2e-45 Score=320.08 Aligned_cols=211 Identities=17% Similarity=0.178 Sum_probs=195.5
Q ss_pred HHHHHhcCCcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCC
Q psy5094 27 AIEAIKLGSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDE 105 (251)
Q Consensus 27 a~~a~~~G~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 105 (251)
|.+|+++|+|+|||+++||||||+|+|.++ +++..++.+||++|+++++|+++|..+|++.++++++.+++.|++.+++
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~ 137 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV 137 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 889999999999999999999999999998 6777889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCC-C-----CeEEEECCCCceeec--CEEEeCCCchhHH
Q psy5094 106 KMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSK-G-----PQLFHLDPSGTYTQF--DAKAIGSGSEGAQ 177 (251)
Q Consensus 106 ~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~-g-----p~Ly~id~~G~~~~~--~~~a~G~g~~~~~ 177 (251)
+++++.+++.|++++|.++++. + |||+|++||||||++ | |+||++||+|++.++ +++++|+|+.+++
T Consensus 138 ~isv~~la~~la~~l~~~~~~~-~----rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~ 212 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLGAA-M----QGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAK 212 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH-T----TTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhh-c----CCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHH
Confidence 9999999999999999887643 3 999999999999965 6 899999999999998 9999999999999
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHhhhcCCC-C--cE-----EEEEEEcCCCEEEcCHHHHHHHHHhhccC
Q psy5094 178 QSLQEVYHESMTLKEAINHVLTILKQVMEEKLNS-T--NV-----ELCTVTADKMYHLYSKEELEEELSKVSSI 243 (251)
Q Consensus 178 ~~Le~~~~~~~s~~ea~~l~~~~l~~~~~~d~~~-~--~i-----~i~~i~~~~~~~~~~~~ei~~~~~~~~~~ 243 (251)
++||+.|+++|+++||++++++||..+.++|... + ++ +|++|+++ ++++++++|+++++..+.+.
T Consensus 213 ~~Le~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~-g~~~l~~~ei~~~l~~i~~~ 285 (294)
T 1q5r_H 213 SALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQA-GAVHVSEETTSELARRIVAE 285 (294)
T ss_dssp HHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETT-EEEECCHHHHHHHHHHHCC-
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECC-CEEEcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998743 2 25 99999987 79999999999999998755
No 29
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=1e-46 Score=314.97 Aligned_cols=209 Identities=18% Similarity=0.170 Sum_probs=193.1
Q ss_pred HHHHhcCCcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHh-hhCC
Q psy5094 28 IEAIKLGSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWF-TYDE 105 (251)
Q Consensus 28 ~~a~~~G~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~ 105 (251)
++++++|+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++ .+++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 36789999999999999999999999998 566678999999999999999999999999999999999999998 9999
Q ss_pred CCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhc
Q psy5094 106 KMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYH 185 (251)
Q Consensus 106 ~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~ 185 (251)
+++++.+++.+++.++. ++.+. |||++++||||+|++||+||.+||.|++.+++++++|+|++.++++||+.|+
T Consensus 82 ~~~v~~la~~l~~~ly~--~r~~~----~P~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 155 (219)
T 1iru_N 82 SYSPRAIHSWLTRAMYS--RRSKM----NPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLE 155 (219)
T ss_dssp CCCHHHHHHHHHHHHHH--HHHTT----CCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHH--hcccC----CCceEEEEEEEEECCCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcC
Confidence 99999999999999964 33333 8999999999999889999999999999999999999999999999999999
Q ss_pred C--CCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEcCHHHHHHHHHhhccCC
Q psy5094 186 E--SMTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLYSKEELEEELSKVSSIH 244 (251)
Q Consensus 186 ~--~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~~~~ei~~~~~~~~~~~ 244 (251)
+ +||++||++++++||..+.++|. ++++++|++|+++ ++++++++||+..|. +.++.
T Consensus 156 ~~~~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~-g~~~~~~~~i~~~~~-~~~~~ 215 (219)
T 1iru_N 156 KQPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEK-GVEIEGPLSTETNWD-IAHMI 215 (219)
T ss_dssp SCSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETT-EEEEEEEECCCCCCG-GGGCS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCC-CEEEcCCeeccchhh-HHHhh
Confidence 9 99999999999999999999986 6788999999998 699999999988873 55543
No 30
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=2.8e-46 Score=315.20 Aligned_cols=210 Identities=16% Similarity=0.219 Sum_probs=193.5
Q ss_pred HHHHhcCCcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHh-----
Q psy5094 28 IEAIKLGSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWF----- 101 (251)
Q Consensus 28 ~~a~~~G~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~----- 101 (251)
++++++|+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 36789999999999999999999999998 566688999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCC-CCeEEEECCCCceeecCEEEeCCCchhHHHHH
Q psy5094 102 TYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSK-GPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSL 180 (251)
Q Consensus 102 ~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~-gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L 180 (251)
.++++++++.+++++++.++. ++.+. |||++++||||||++ ||+||.+||.|++.+++++++|+|+.+++++|
T Consensus 82 ~~~~~~~v~~la~~l~~~ly~--~r~~~----~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~L 155 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVMYQ--RRSKM----NPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLL 155 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHHHH--HHHTT----CCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHH--hcCCC----CCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHH
Confidence 899999999999999999954 43333 899999999999975 89999999999999999999999999999999
Q ss_pred HhhhcC-----CCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEcCHHHHHHH-HHhhccCC
Q psy5094 181 QEVYHE-----SMTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLYSKEELEEE-LSKVSSIH 244 (251)
Q Consensus 181 e~~~~~-----~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~~~~ei~~~-~~~~~~~~ 244 (251)
|+.|++ +||++||++++++||..+.++|. ++++++|++|++++++++++++||+++ | .+.++.
T Consensus 156 e~~~~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~~~~~i~~~~w-~~~~~~ 225 (233)
T 1ryp_N 156 RKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKW-DFAKDI 225 (233)
T ss_dssp TTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCSCCC-GGGGGC
T ss_pred HHhhccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEcChHhcccccc-hhhhhc
Confidence 999999 99999999999999999999997 677899999999867999999999998 8 355443
No 31
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=3.1e-45 Score=303.10 Aligned_cols=196 Identities=20% Similarity=0.300 Sum_probs=185.4
Q ss_pred CcEEEEEeCCeEEEEEeccCCCc-ccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITSV-LMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVA 113 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 113 (251)
+|+|||+++||||||+|+|.+++ ++..++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999996 77778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccccCCcceeeEEEEEcC-CCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhcCCCCHHH
Q psy5094 114 QAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKE 192 (251)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~-~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~e 192 (251)
+.+++++|.|+ +||++++|+||||+ +||+||.+||.|++.+++++++|+|++.++++||+.|+++||++|
T Consensus 81 ~~l~~~~~~~~---------~p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~ee 151 (205)
T 1iru_H 81 SLFKEMCYRYR---------EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEE 151 (205)
T ss_dssp HHHHHHHHHTT---------TTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHhcC---------cCccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHH
Confidence 99999998775 48999999999996 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCC-EEEcCHHHHHHHHHh
Q psy5094 193 AINHVLTILKQVMEEKL-NSTNVELCTVTADKM-YHLYSKEELEEELSK 239 (251)
Q Consensus 193 a~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~-~~~~~~~ei~~~~~~ 239 (251)
|++++++||..+.++|. ++++++|++|++++. +++++++||++++++
T Consensus 152 a~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~~ 200 (205)
T 1iru_H 152 CLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVA 200 (205)
T ss_dssp HHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCCC
T ss_pred HHHHHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHhh
Confidence 99999999999999985 678999999999965 789999999887764
No 32
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=2.3e-44 Score=303.73 Aligned_cols=202 Identities=18% Similarity=0.200 Sum_probs=188.3
Q ss_pred CcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVA 113 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 113 (251)
+|+|||+++||||||+|+|.++ +++.+++.+||++|+++++|+++|..+|++.++++++.+++.|++.++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 6899999999999999999998 677788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccccCCcceeeEEEEEcCC-C-----CeEEEECCCCceeec--CEEEeCCCchhHHHHHHhhhc
Q psy5094 114 QAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSK-G-----PQLFHLDPSGTYTQF--DAKAIGSGSEGAQQSLQEVYH 185 (251)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~-g-----p~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~ 185 (251)
+.|++++|.++++. . |||++++||||||++ | |+||.+||+|++.++ +++|+|+|+.+++++||+.|+
T Consensus 81 ~~l~~~~~~~~~~~-~----rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~ 155 (235)
T 1q5q_H 81 NRLASMVRGNLGAA-M----QGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS 155 (235)
T ss_dssp HHHHHHHHTTHHHH-T----TTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhh-h----cccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcC
Confidence 99999999877642 3 899999999999976 7 999999999999999 999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhcCCCCc---E-----EEEEEEcCCCEEEcCHHHHHHHHHhhcc
Q psy5094 186 ESMTLKEAINHVLTILKQVMEEKLNSTN---V-----ELCTVTADKMYHLYSKEELEEELSKVSS 242 (251)
Q Consensus 186 ~~~s~~ea~~l~~~~l~~~~~~d~~~~~---i-----~i~~i~~~~~~~~~~~~ei~~~~~~~~~ 242 (251)
++||++||++++++||..+.++|...++ + +|++|+++ ++++++++|+++++..+.+
T Consensus 156 ~~ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~-g~~~l~~~ei~~~~~~~~~ 219 (235)
T 1q5q_H 156 PDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQA-GAVHVSEETTSELARRIVA 219 (235)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETT-EEEECCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCC-CeEEeCHHHHHHHHHHHHH
Confidence 9999999999999999999999875332 3 99999987 6999999999999988874
No 33
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=2.6e-44 Score=307.01 Aligned_cols=199 Identities=23% Similarity=0.337 Sum_probs=178.4
Q ss_pred HHHHHhcCCcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCC
Q psy5094 27 AIEAIKLGSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDE 105 (251)
Q Consensus 27 a~~a~~~G~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 105 (251)
.+||+++|+|+|||+++||||||+|+|.++ .++..++.+||++|++|++|+++|..+|++.+.++++.+++.|++.+++
T Consensus 22 ~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~ 101 (261)
T 3nzj_H 22 QPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSR 101 (261)
T ss_dssp --------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCC
Confidence 478999999999999999999999999998 4566889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhc
Q psy5094 106 KMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYH 185 (251)
Q Consensus 106 ~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~ 185 (251)
+++++.+++.+++.++.|. +||++++||||||++||+||++||.|++.+++++|+|+|+..++++||+.|+
T Consensus 102 ~~~v~~~a~~l~~~l~~~~---------~~~gv~llvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 172 (261)
T 3nzj_H 102 EPRVVSALQMLKQHLFKYQ---------GHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWK 172 (261)
T ss_dssp CCCHHHHHHHHHHHHHHTT---------TCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHhc---------CcccEEEEEEEEeCCCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhc
Confidence 9999999999999987642 7999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEcCHHHHH
Q psy5094 186 ESMTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLYSKEELE 234 (251)
Q Consensus 186 ~~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~~~~ei~ 234 (251)
++|+++||++++++||..+.++|. ++++++|++|++++.++++.+..++
T Consensus 173 ~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~~~~~ 222 (261)
T 3nzj_H 173 QDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTP 222 (261)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECC
T ss_pred cCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEeccccCC
Confidence 999999999999999999999987 6789999999999766665554443
No 34
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=2.2e-44 Score=297.95 Aligned_cols=189 Identities=19% Similarity=0.308 Sum_probs=178.7
Q ss_pred HHHHhcCCcEEEEEeCCeEEEEEeccCCCc-ccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCC
Q psy5094 28 IEAIKLGSTAIGISTSEGVVLAAEKRITSV-LMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEK 106 (251)
Q Consensus 28 ~~a~~~G~tvvgi~~~~gVvla~d~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 106 (251)
.+++++|+|+|||+++||||||+|+|.+++ ++..++.+||++|++|++|+++|..+|++.+.++++.+++.|++.+++
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~- 81 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT- 81 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 578999999999999999999999999996 677788999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcC-CCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhc
Q psy5094 107 MDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYH 185 (251)
Q Consensus 107 i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~-~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~ 185 (251)
++++.+++.+++++|.|++ + |++++||||||+ +||+||.+||.|++.+++++++|+|++.++++||+.|+
T Consensus 82 ~~v~~la~~l~~~~~~~~~--------~-~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 152 (205)
T 1ryp_H 82 PSTETAASVFKELCYENKD--------N-LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFR 152 (205)
T ss_dssp CCHHHHHHHHHHHHHHTTT--------T-CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhhhc--------C-ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccC
Confidence 9999999999999999865 4 899999999996 78999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEE
Q psy5094 186 ESMTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKMYH 226 (251)
Q Consensus 186 ~~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~ 226 (251)
++||++||++++++||..+.++|. ++++++|++|++++..+
T Consensus 153 ~~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~ 194 (205)
T 1ryp_H 153 ENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVER 194 (205)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEE
Confidence 999999999999999999999987 67899999999985533
No 35
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=1.4e-45 Score=316.32 Aligned_cols=215 Identities=15% Similarity=0.213 Sum_probs=195.2
Q ss_pred hhhHHHHHhcCCcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHh-
Q psy5094 24 VEYAIEAIKLGSTAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWF- 101 (251)
Q Consensus 24 ~eya~~a~~~G~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~- 101 (251)
.+.+.+++++|+|+|||+++||||||+|+|.++ .++.+++.+||++|+++++|+++|..+|++.|+++++.+++.|++
T Consensus 31 ~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~ 110 (266)
T 1g0u_M 31 MVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYD 110 (266)
T ss_dssp ---CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhc
Confidence 456778999999999999999999999999998 466678999999999999999999999999999999999999998
Q ss_pred ----hhCCCCCHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCC-CCeEEEECCCCceeecCEEEeCCCchhH
Q psy5094 102 ----TYDEKMDIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSK-GPQLFHLDPSGTYTQFDAKAIGSGSEGA 176 (251)
Q Consensus 102 ----~~~~~i~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~-gp~Ly~id~~G~~~~~~~~a~G~g~~~~ 176 (251)
.++++++++.++++++++++. ++.+. |||++++||||||++ ||+||.+||.|++.+++++++|+|+..+
T Consensus 111 ~~~~~~~~~~~v~~la~~l~~~ly~--~r~~~----~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a 184 (266)
T 1g0u_M 111 NPLADAEEALEPSYIFEYLATVMYQ--RRSKM----NPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMA 184 (266)
T ss_dssp CTTTTTTTSCCHHHHHHHHHHHHHH--HHHTT----CCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTH
T ss_pred cchhhcCCCCCHHHHHHHHHHHHHH--hccCC----CCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHH
Confidence 899999999999999999954 43333 899999999999975 8999999999999999999999999999
Q ss_pred HHHHHhhhcC-----CCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEcCHHHHHHH-HHhhccCCC
Q psy5094 177 QQSLQEVYHE-----SMTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLYSKEELEEE-LSKVSSIHD 245 (251)
Q Consensus 177 ~~~Le~~~~~-----~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~~~~ei~~~-~~~~~~~~~ 245 (251)
+++||+.|++ +||++||++++++||..+.++|. ++++++|++|++++++++++++||+++ | ++.++..
T Consensus 185 ~~~Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~~~~ei~~~~w-~~~~~~~ 259 (266)
T 1g0u_M 185 NPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKW-DFAKDIK 259 (266)
T ss_dssp HHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCCCCC-GGGGGCC
T ss_pred HHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEcCHHHhhhhhh-hHHhhhc
Confidence 9999999999 99999999999999999999987 677899999999867999999999998 7 3554433
No 36
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=4.2e-44 Score=301.54 Aligned_cols=194 Identities=25% Similarity=0.415 Sum_probs=183.4
Q ss_pred CcEEEEEeCCeEEEEEeccCCCcc-cCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITSVL-MEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVA 113 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~~~-~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 113 (251)
+|+|||+++||||||+|+|.++++ +..++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 689999999999999999999975 4468899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhcCCCCHHHH
Q psy5094 114 QAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEA 193 (251)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 193 (251)
+++++++++|. +||++++||||||++||+||++||.|++.+++++|+|+|+..++++||+.|+++|+++||
T Consensus 81 ~~l~~~l~~~~---------~p~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA 151 (234)
T 3unf_H 81 RILRQTLFRYQ---------GHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAA 151 (234)
T ss_dssp HHHHHHHHHTT---------TCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHH
T ss_pred HHHHHHHHhcC---------CCccEEEEEEEEeCCCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHH
Confidence 99999998652 799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEcCHHHHHHHHH
Q psy5094 194 INHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLYSKEELEEELS 238 (251)
Q Consensus 194 ~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~~~~ei~~~~~ 238 (251)
++++++||..+.++|. ++++++|++|+++ ++++++++|++..|.
T Consensus 152 ~~la~~al~~~~~~D~~sg~~iev~vi~~d-g~~~l~~~~i~~~~~ 196 (234)
T 3unf_H 152 QELLVEAITAGILSDLGSGGNVDACVITAG-GAKLQRALSTPTEPV 196 (234)
T ss_dssp HHHHHHHHHHHHHHBTTCCSCEEEEEEESS-CEEEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEECC-CEEEeCceecccccc
Confidence 9999999999999987 7789999999998 899999998876654
No 37
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=1.6e-43 Score=291.29 Aligned_cols=189 Identities=20% Similarity=0.228 Sum_probs=176.9
Q ss_pred CcEEEEEeCCeEEEEEeccCCCcccC-CCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITSVLME-PSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVA 113 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 113 (251)
+|+|||+++||||||+|+|.+++++. +++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 68999999999999999999986544 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccccCCcceeeEEEEEcC--CCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhcCCCCHH
Q psy5094 114 QAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS--KGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLK 191 (251)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~--~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ 191 (251)
+.+++.+|.+++. .+||++++||||||+ +||+||.+||.|++.+++++++|+|++.++++||+.|+++||++
T Consensus 82 ~~l~~~l~~~~~~------r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~e 155 (198)
T 1ryp_K 82 SFVRQELAKSIRS------RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTE 155 (198)
T ss_dssp HHHHHHHHHHTTS------SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHH
T ss_pred HHHHHHHHHhccc------CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHH
Confidence 9999999988753 149999999999995 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEcCH
Q psy5094 192 EAINHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLYSK 230 (251)
Q Consensus 192 ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~~~ 230 (251)
||++++++||..+.++|. ++++++|++|+++ +++++++
T Consensus 156 ea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~-g~~~~~~ 194 (198)
T 1ryp_K 156 EGLDLLKLCVQELEKRMPMDFKGVIVKIVDKD-GIRQVDD 194 (198)
T ss_dssp HHHHHHHHHHHHHHHHCSBCCCCEEEEEEETT-EEEEECC
T ss_pred HHHHHHHHHHHHHHHhCccCCCceEEEEEcCC-CEEEecc
Confidence 999999999999999985 7889999999998 7787765
No 38
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=1.2e-42 Score=289.25 Aligned_cols=186 Identities=21% Similarity=0.323 Sum_probs=173.8
Q ss_pred HhcCCcEEEEEeCCeEEEEEeccCCCccc-CCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCH
Q psy5094 31 IKLGSTAIGISTSEGVVLAAEKRITSVLM-EPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDI 109 (251)
Q Consensus 31 ~~~G~tvvgi~~~~gVvla~d~~~~~~~~-~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 109 (251)
+++|+|+|||+++||||||+|+|.+++++ .+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.+++++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 85 (213)
T 1iru_M 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTT 85 (213)
T ss_dssp CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 57999999999999999999999999654 46789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCC-CeEEEECCCCceeecCEEEeCCCchhHHHHHHhh-----
Q psy5094 110 ESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKG-PQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEV----- 183 (251)
Q Consensus 110 ~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~g-p~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~----- 183 (251)
+.+++++++++ |+++ .|||++++||||||++| |+||.+||.|++.+++++|+|+|+++++++||+.
T Consensus 86 ~~la~~l~~~~--y~~r------~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~ 157 (213)
T 1iru_M 86 GAIAAMLSTIL--YSRR------FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKN 157 (213)
T ss_dssp HHHHHHHHHHH--HHTT------TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHH--HhhC------CCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhcccccc
Confidence 99999999999 4453 28999999999999655 9999999999999999999999999999999999
Q ss_pred ----hcCCCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCC
Q psy5094 184 ----YHESMTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKM 224 (251)
Q Consensus 184 ----~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~ 224 (251)
|+++||++||++++++||..+.++|. ++++++|++|++++.
T Consensus 158 ~~~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~ 203 (213)
T 1iru_M 158 MQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGI 203 (213)
T ss_dssp CSSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEE
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCe
Confidence 88899999999999999999999996 678999999999843
No 39
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=1.6e-42 Score=290.10 Aligned_cols=190 Identities=23% Similarity=0.332 Sum_probs=177.1
Q ss_pred CcEEEEEeCCeEEEEEeccCCCcc-cCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITSVL-MEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVA 113 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~~~-~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 113 (251)
+|+|||+++||||||+|+|.++++ +..++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 689999999999999999999865 4467889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhcCCCCHHHH
Q psy5094 114 QAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEA 193 (251)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 193 (251)
+.+++++++|. |||++++||||+|++||+||.+||.|++.+++++|+|+|+..++++||+.|+++||++||
T Consensus 81 ~~l~~~l~~~~---------~p~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA 151 (222)
T 1ryp_I 81 QMLKQHLFKYQ---------GHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEA 151 (222)
T ss_dssp HHHHHHHHHTT---------TCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHH
T ss_pred HHHHHHHhhcC---------CCCCeeEEEEEEeCCCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHH
Confidence 99999997652 799999999999998999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEcCHHHH
Q psy5094 194 INHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLYSKEEL 233 (251)
Q Consensus 194 ~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~~~~ei 233 (251)
++++++||..+.++|. ++++++|++|+++++++++.+.++
T Consensus 152 ~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~~~ 192 (222)
T 1ryp_I 152 IKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLT 192 (222)
T ss_dssp HHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEEC
T ss_pred HHHHHHHHHHHHhccccCCCcEEEEEEECCCCEEEEeceec
Confidence 9999999999999987 677899999999853777655443
No 40
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=1.9e-43 Score=291.07 Aligned_cols=192 Identities=21% Similarity=0.281 Sum_probs=177.9
Q ss_pred CcEEEEEeCCeEEEEEeccCCCc-ccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITSV-LMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVA 113 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 113 (251)
||+|||+++||||||+|+|.+++ ++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999986 67788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccccCCcceeeEEEEEcC-CCCeEEEECCCCceee-cCEEEeCCCchhHHHHHHhhhcCCCCHH
Q psy5094 114 QAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQ-FDAKAIGSGSEGAQQSLQEVYHESMTLK 191 (251)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~-~gp~Ly~id~~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~s~~ 191 (251)
+++++++|.+. |||++++||||||+ +||+||. |+|++.+ ..++++|+|++.++++||+.|+++||++
T Consensus 81 ~~l~~~l~~~~---------~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~e 149 (199)
T 3unf_N 81 NVVKNISYKYR---------EDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPE 149 (199)
T ss_dssp HHHHHHHHHTT---------TTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHH
T ss_pred HHHHHHHHhcC---------CCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHH
Confidence 99999998652 79999999999997 6799999 9999765 5566779999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCC-EEEcCHHHHHHHH
Q psy5094 192 EAINHVLTILKQVMEEKL-NSTNVELCTVTADKM-YHLYSKEELEEEL 237 (251)
Q Consensus 192 ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~-~~~~~~~ei~~~~ 237 (251)
||++++++||..+.++|. ++++++|++|++++. +++++++||+++|
T Consensus 150 ea~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~ 197 (199)
T 3unf_N 150 ECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFY 197 (199)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCC
T ss_pred HHHHHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCcccc
Confidence 999999999999999997 667899999999964 8899999987654
No 41
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=3.7e-42 Score=287.92 Aligned_cols=187 Identities=24% Similarity=0.357 Sum_probs=174.3
Q ss_pred HHhcCCcEEEEEeCCeEEEEEeccCCCcc-cCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhC-CCC
Q psy5094 30 AIKLGSTAIGISTSEGVVLAAEKRITSVL-MEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYD-EKM 107 (251)
Q Consensus 30 a~~~G~tvvgi~~~~gVvla~d~~~~~~~-~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~i 107 (251)
.+++|+|+|||+++||||||+|+|.++++ +.+++.+||++|+++++|+++|..+|++.+.++++.+++.|++.++ +++
T Consensus 5 ~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 84 (222)
T 1ryp_M 5 YGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKL 84 (222)
T ss_dssp CCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred cccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 46799999999999999999999999965 4578999999999999999999999999999999999999999999 999
Q ss_pred CHHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCC-CeEEEECCCCceeecCEEEeCCCchhHHHHHHhh---
Q psy5094 108 DIESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKG-PQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEV--- 183 (251)
Q Consensus 108 ~~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~g-p~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~--- 183 (251)
+++.+++++++.+ |+++ .+||++++||||||++| |+||.+||.|++.+++++|+|+|+.+++++||+.
T Consensus 85 ~v~~la~~l~~~l--y~~r------~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~ 156 (222)
T 1ryp_M 85 SINSAARNIQHLL--YGKR------FFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNF 156 (222)
T ss_dssp CHHHHHHHHHHHH--HTTT------TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHH--HhcC------CCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccc
Confidence 9999999999998 4442 37999999999999655 9999999999999999999999999999999998
Q ss_pred --------------hcCCCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCC
Q psy5094 184 --------------YHESMTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKM 224 (251)
Q Consensus 184 --------------~~~~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~ 224 (251)
|+++||++||++++++||..+.++|+ ++++++|++|++++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~ 212 (222)
T 1ryp_M 157 KNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGV 212 (222)
T ss_dssp TTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEE
T ss_pred ccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCe
Confidence 78999999999999999999999997 678899999999843
No 42
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=4.4e-42 Score=284.15 Aligned_cols=186 Identities=16% Similarity=0.225 Sum_probs=172.6
Q ss_pred HhcCCcEEEEEeCCeEEEEEeccCCCcccC-CCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCH
Q psy5094 31 IKLGSTAIGISTSEGVVLAAEKRITSVLME-PSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDI 109 (251)
Q Consensus 31 ~~~G~tvvgi~~~~gVvla~d~~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 109 (251)
+.+|+|+|||+++||||||+|+|.+++++. +++.+||++|++|++|+++|..+|++.+.++++.+++.|++.+++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 84 (205)
T 1iru_J 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP 84 (205)
T ss_dssp TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 468999999999999999999999997654 5689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcC--CCCeEEEECCCCceeec-CEEEeCCCchhHHHHHHhhhcC
Q psy5094 110 ESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS--KGPQLFHLDPSGTYTQF-DAKAIGSGSEGAQQSLQEVYHE 186 (251)
Q Consensus 110 ~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~--~gp~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~ 186 (251)
+.+++.+++.+ |+++ ..||++++||||||+ +||+||.+||.|++.++ .++++|+|+++++++||+.|++
T Consensus 85 ~~la~~l~~~~--y~~r------~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~ 156 (205)
T 1iru_J 85 YTLMSMVANLL--YEKR------FGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEP 156 (205)
T ss_dssp HHHHHHHHHHH--HTTT------TSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHH--HHhc------CCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCC
Confidence 99999999999 6664 269999999999994 78999999999999654 6799999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCC
Q psy5094 187 SMTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKM 224 (251)
Q Consensus 187 ~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~ 224 (251)
+||++||++++++||..+.++|. ++++++|++|++++.
T Consensus 157 ~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~ 195 (205)
T 1iru_J 157 NMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKI 195 (205)
T ss_dssp SCCHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBE
T ss_pred CCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCE
Confidence 99999999999999999999997 577999999999844
No 43
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=1e-41 Score=281.69 Aligned_cols=186 Identities=17% Similarity=0.240 Sum_probs=172.6
Q ss_pred HHhcCCcEEEEEeCCeEEEEEeccCCCcccC-CCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCC
Q psy5094 30 AIKLGSTAIGISTSEGVVLAAEKRITSVLME-PSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMD 108 (251)
Q Consensus 30 a~~~G~tvvgi~~~~gVvla~d~~~~~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 108 (251)
.+.+|+|+|||+++||||||+|+|.+++++. +++.+||++|+ |++|+++|..+|++.+.++++.+++.|+++++++++
T Consensus 4 ~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 82 (204)
T 1ryp_J 4 SSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIE 82 (204)
T ss_dssp GGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 3579999999999999999999999997654 56899999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcC--CCCeEEEECCCCceeec-CEEEeCCCchhHHHHHHhhhc
Q psy5094 109 IESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS--KGPQLFHLDPSGTYTQF-DAKAIGSGSEGAQQSLQEVYH 185 (251)
Q Consensus 109 ~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~--~gp~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~ 185 (251)
++.+++.+++.+ |+++. .||++++||||||+ +||+||.+||.|++.++ .++++|+|+++++++||+.|+
T Consensus 83 v~~la~~l~~~~--y~~~~------~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~ 154 (204)
T 1ryp_J 83 PETFTQLVSSSL--YERRF------GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYE 154 (204)
T ss_dssp HHHHHHHHHHHH--HTTTT------SCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH--HHhcC------CCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcC
Confidence 999999999999 66642 59999999999995 78999999999999664 679999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCC
Q psy5094 186 ESMTLKEAINHVLTILKQVMEEKL-NSTNVELCTVTADKM 224 (251)
Q Consensus 186 ~~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~ 224 (251)
++|+++||++++++||..+.++|. ++++++|++|++++.
T Consensus 155 ~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~ 194 (204)
T 1ryp_J 155 PNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEV 194 (204)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCE
T ss_pred CCcCHHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCE
Confidence 999999999999999999999986 678899999999854
No 44
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=1.8e-42 Score=291.91 Aligned_cols=193 Identities=21% Similarity=0.383 Sum_probs=178.9
Q ss_pred CcEEEEEeCCeEEEEEeccCCCccc-CCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITSVLM-EPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVA 113 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~~~~-~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 113 (251)
+|+|||+++||||||+|+|.+++++ ..++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 6899999999999999999999654 467889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhcCCCCHHHH
Q psy5094 114 QAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKEA 193 (251)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 193 (251)
+++++.++.|+ +||++++||||||++||+||.+||.|++.+++++++|+|+..++++||+.|+++||++||
T Consensus 81 ~~l~~~l~~~~---------~~~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA 151 (234)
T 1iru_I 81 RMLKQMLFRYR---------GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEA 151 (234)
T ss_dssp HHHHHHHHHTT---------TCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHH
T ss_pred HHHHHHHHhcC---------CCCceeEEEEEEcCCCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHH
Confidence 99999997653 699999999999998999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEcCHHHHHHHH
Q psy5094 194 INHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLYSKEELEEEL 237 (251)
Q Consensus 194 ~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~~~~ei~~~~ 237 (251)
++++++||..+.++|. ++++++|++|+++ +++.+.+.+++.-|
T Consensus 152 ~~la~~al~~a~~~d~~sg~~i~v~vi~k~-g~~~~~~~~~~~~~ 195 (234)
T 1iru_I 152 KNLVSEAIAAGIFNDLGSGSNIDLCVISKN-KLDFLRPYTVPNKK 195 (234)
T ss_dssp HTHHHHHHHHHHHHCTTCCSCEEEEEEETT-EEECCSEEECCCCC
T ss_pred HHHHHHHHHHHHHhcccCCCCEEEEEEECC-cEEEEcceecCccc
Confidence 9999999999999987 5789999999998 67877765554444
No 45
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=9.8e-42 Score=281.25 Aligned_cols=188 Identities=16% Similarity=0.218 Sum_probs=172.6
Q ss_pred CcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEEcCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEIDKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESVA 113 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~ 113 (251)
+|+|||+++||||||+|+|.++ +++..++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6899999999999999999998 577788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccccCCcceeeEEEEEcC-CCCeEEEECCCCceeecCEEEeCCCchhHHHHHHhhhcCCCCHHH
Q psy5094 114 QAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDS-KGPQLFHLDPSGTYTQFDAKAIGSGSEGAQQSLQEVYHESMTLKE 192 (251)
Q Consensus 114 ~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~-~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~e 192 (251)
+++++.+..+.+. .|||++++||||||+ +||+||.+||.|++.+++++++|+|+++++++||+.|+++||++|
T Consensus 82 ~~~~~~l~~~~~~------~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~ee 155 (201)
T 1iru_K 82 NFTRRNLADCLRS------RTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRER 155 (201)
T ss_dssp HHHHHHHHHHHTS------SSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHHHhc------CCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHH
Confidence 9998765212121 169999999999996 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcC-CCCcEEEEEEEcCCCEEEcC
Q psy5094 193 AINHVLTILKQVMEEKL-NSTNVELCTVTADKMYHLYS 229 (251)
Q Consensus 193 a~~l~~~~l~~~~~~d~-~~~~i~i~~i~~~~~~~~~~ 229 (251)
|++++++||..+.++|. ++++++|++|+++ ++++++
T Consensus 156 a~~l~~~al~~a~~rd~~sg~~i~v~vi~~~-g~~~~~ 192 (201)
T 1iru_K 156 AVELLRKCLEELQKRFILNLPTFSVRIIDKN-GIHDLD 192 (201)
T ss_dssp HHHHHHHHHHHHHHTBCBCCCCEEEEEEETT-EEECCC
T ss_pred HHHHHHHHHHHHHhhccccCCceEEEEEcCC-CeEEee
Confidence 99999999999999997 6778999999998 667655
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=8.4e-35 Score=235.75 Aligned_cols=168 Identities=13% Similarity=0.142 Sum_probs=145.6
Q ss_pred hcCCcEEEEEeCCeEEEEEeccCCC-cc-cCCCccCcEEEE-cCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCC
Q psy5094 32 KLGSTAIGISTSEGVVLAAEKRITS-VL-MEPSSIKKIVEI-DKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMD 108 (251)
Q Consensus 32 ~~G~tvvgi~~~~gVvla~d~~~~~-~~-~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 108 (251)
.+|+|+|||+++||||||+|+|.+. .+ +.+++.+||++| ++|++|+++|..+|++.+.++++.+++.|+ + ..
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~~ 77 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--NL 77 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--CH
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--Ch
Confidence 5899999999999999999999998 56 778899999999 999999999999999999999999999988 2 22
Q ss_pred HHHHHHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceee--cCEEEeCCCchhHHHHHHhhhcC
Q psy5094 109 IESVAQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQ--FDAKAIGSGSEGAQQSLQEVYHE 186 (251)
Q Consensus 109 ~~~l~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~--~~~~a~G~g~~~~~~~Le~~~~~ 186 (251)
++.++ .+++. +++.... |||++++||| +||+||.+||.|++.+ ++++|+|+|+++++++||+.|++
T Consensus 78 ~~~~~-~l~~~---~~~~~~~----rp~~~~~lva----d~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~ 145 (180)
T 2z3b_A 78 KRAAV-ELAKE---WRSDKVL----RKLEAMLIVM----NQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKH 145 (180)
T ss_dssp HHHHH-HHHHH---HHHCTTG----GGCCCCEEEE----CSSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHH---HHhhhCc----CcceEEEEEE----cCCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhc
Confidence 22222 34444 4443333 8999999999 4799999999999998 59999999999999999999998
Q ss_pred ---CCCHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEE
Q psy5094 187 ---SMTLKEAINHVLTILKQVMEEKL-NSTNVELCTV 219 (251)
Q Consensus 187 ---~~s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i 219 (251)
+|+.+| ++.+||+.+.++|. ++++++|.+|
T Consensus 146 ~~~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 146 AGESMSASE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp HGGGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred cCCCCCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 999999 46799999999997 6778999887
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=3.4e-34 Score=230.35 Aligned_cols=165 Identities=18% Similarity=0.212 Sum_probs=142.5
Q ss_pred CcEEEEEeCCeEEEEEeccCCC-cccCCCccCcEEEE-cCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITS-VLMEPSSIKKIVEI-DKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESV 112 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~-~~~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 112 (251)
+|+|||+++||||||+|+|.++ .++.+++.+||++| ++|++++++|..+|++.+.++++.+++.|+++ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6899999999999999999998 57778899999999 99999999999999999999999999988854 24444
Q ss_pred HHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeecC--EEEeCCCchhHHHHHHhhhc-CCCC
Q psy5094 113 AQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFD--AKAIGSGSEGAQQSLQEVYH-ESMT 189 (251)
Q Consensus 113 ~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~~--~~a~G~g~~~~~~~Le~~~~-~~~s 189 (251)
++. .+.++++.+. |||++.+|++ | ||+||.+||.|++.+++ +.++|+|+++++++||+.|+ ++||
T Consensus 76 ~~l----~~~~~~~~~~----~~~~~~~lv~--D--~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms 143 (171)
T 1m4y_A 76 VEL----AKDWRTDRVL----RRLEALLLVA--D--KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLS 143 (171)
T ss_dssp HHH----HHHHHHCTTG----GGCCCEEEEE--C--SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCC
T ss_pred HHH----HHHHHHhCCC----CceEEEEEEE--c--CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCC
Confidence 444 3333333222 7899998888 5 89999999999999987 99999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHhhhcC-CCCcEEEEEE
Q psy5094 190 LKEAINHVLTILKQVMEEKL-NSTNVELCTV 219 (251)
Q Consensus 190 ~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i 219 (251)
. ++++++||+.+.++|. ++++++|.++
T Consensus 144 ~---~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 144 A---REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp H---HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred H---HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 7 6789999999999987 6778988763
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=8.4e-34 Score=228.70 Aligned_cols=166 Identities=14% Similarity=0.136 Sum_probs=143.4
Q ss_pred CcEEEEEeCCeEEEEEeccCCCc-ccCCCccCcEEEE-cCcEEEEeccchhHHHHHHHHHHHHHHHHHhhhCCCCCHHHH
Q psy5094 35 STAIGISTSEGVVLAAEKRITSV-LMEPSSIKKIVEI-DKHIGCAASGLIADSRILTDRARVECANHWFTYDEKMDIESV 112 (251)
Q Consensus 35 ~tvvgi~~~~gVvla~d~~~~~~-~~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 112 (251)
+|+|||+++||||||+|+|.+++ ++.+++.+||++| ++|++++++|..+|++.+.++++.+++.|++ ++...
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 68999999999999999999985 6778899999999 9999999999999999999999999999885 34444
Q ss_pred HHHHHHHHHHhcCccccccccCCcceeeEEEEEcCCCCeEEEECCCCceeecC---EEEeCCCchhHHHHHHhhhc-CCC
Q psy5094 113 AQAVSNLAIQFGDSDEESAMSRPFGVAMLFAGLDSKGPQLFHLDPSGTYTQFD---AKAIGSGSEGAQQSLQEVYH-ESM 188 (251)
Q Consensus 113 ~~~ls~~~~~~~~~~~~~~~~rP~~~~~lv~G~d~~gp~Ly~id~~G~~~~~~---~~a~G~g~~~~~~~Le~~~~-~~~ 188 (251)
+..|++.+ +++.+. ||+ .++++|+| ||+||.+||+|++.+++ ++|+|+|+++++++||+.|+ ++|
T Consensus 75 ~~~l~~~~---~~~~~~----r~~--~~~l~g~d--~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~m 143 (174)
T 1g3k_A 75 AVELAKDW---RTDRAL----RKL--EAMLIVAD--EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTEL 143 (174)
T ss_dssp HHHHHHHH---HHSTTG----GGC--CCEEEEEC--SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHH---HhccCc----Ccc--eEEEEEEC--CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCC
Confidence 44444444 443222 675 57888887 79999999999999988 99999999999999999999 999
Q ss_pred CHHHHHHHHHHHHHHHhhhcC-CCCcEEEEEEE
Q psy5094 189 TLKEAINHVLTILKQVMEEKL-NSTNVELCTVT 220 (251)
Q Consensus 189 s~~ea~~l~~~~l~~~~~~d~-~~~~i~i~~i~ 220 (251)
+.+ +++++||+.+.++|. ++++++|.+|+
T Consensus 144 t~~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 144 SAH---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp CHH---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred CHH---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 955 799999999999987 67889999985
No 49
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=63.54 E-value=8.8 Score=27.75 Aligned_cols=31 Identities=0% Similarity=-0.078 Sum_probs=26.0
Q ss_pred CCcEEEEEEEcCCC--EEEcCHHHHHHHHHhhc
Q psy5094 211 STNVELCTVTADKM--YHLYSKEELEEELSKVS 241 (251)
Q Consensus 211 ~~~i~i~~i~~~~~--~~~~~~~ei~~~~~~~~ 241 (251)
.+.+-|.+++++++ .|.++++|+-++...+.
T Consensus 66 ~~~~vVkVvD~~TgEVIRqIPpEe~L~l~~~l~ 98 (117)
T 2hc5_A 66 LNEYYVKVIEDSTNEVIREIPPKRWLDFYAAMT 98 (117)
T ss_dssp TTEEEEEEEETTTTEEEEEECHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeCChHHHHHHHHHHH
Confidence 45689999999977 79999999988877665
No 50
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=50.33 E-value=27 Score=23.86 Aligned_cols=57 Identities=18% Similarity=0.145 Sum_probs=40.9
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCC-EEEcCHHHHHHHHHhhccCCC
Q psy5094 184 YHESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKM-YHLYSKEELEEELSKVSSIHD 245 (251)
Q Consensus 184 ~~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~-~~~~~~~ei~~~~~~~~~~~~ 245 (251)
..++++.++..+.+.+.++. .....|.+.+++.+|. ..+.+++|++..+.-++.-.|
T Consensus 22 v~~~i~~~~L~~kv~~~~~~-----~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~ 79 (89)
T 1vd2_A 22 FEPSISFEGLCNEVRDMCSF-----DNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKD 79 (89)
T ss_dssp ECTTCCHHHHHHHHHHHTTC-----CSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHHHHhCC-----CCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCC
Confidence 34678899888777664331 1345699999999855 778999999998876554443
No 51
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=48.40 E-value=24 Score=24.52 Aligned_cols=26 Identities=0% Similarity=0.083 Sum_probs=21.0
Q ss_pred EEEEEcC-CCEEEcCHHHHHHHHHhhc
Q psy5094 216 LCTVTAD-KMYHLYSKEELEEELSKVS 241 (251)
Q Consensus 216 i~~i~~~-~~~~~~~~~ei~~~~~~~~ 241 (251)
|.+++++ +.|+.+++++|..+|..-+
T Consensus 31 I~W~~~~~g~Fkl~d~~~VArlWG~rK 57 (97)
T 1yo5_C 31 IRWLNKEKGIFKIEDSAQVARLWGIRK 57 (97)
T ss_dssp EEEEETTTTEEEESCHHHHHHHHHHHH
T ss_pred eEeecCCCCEEEecCHHHHHHHHHhcC
Confidence 6788875 4499999999999997544
No 52
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.92 E-value=31 Score=24.91 Aligned_cols=27 Identities=4% Similarity=0.049 Sum_probs=22.2
Q ss_pred EEEEEEcCC-CEEEcCHHHHHHHHHhhc
Q psy5094 215 ELCTVTADK-MYHLYSKEELEEELSKVS 241 (251)
Q Consensus 215 ~i~~i~~~~-~~~~~~~~ei~~~~~~~~ 241 (251)
-|.++++++ .|+.+++++|..+|..-+
T Consensus 27 ~I~W~~~~~g~Fklvdp~~VArlWG~rK 54 (118)
T 2dao_A 27 FIRWEDKESKIFRIVDPNGLARLWGNHK 54 (118)
T ss_dssp TEEEEEGGGTEEEESCHHHHHHHHHHHT
T ss_pred ceEeeCCCCCeEEEeCHHHHHHHHHhcc
Confidence 478889875 499999999999997544
No 53
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=37.98 E-value=22 Score=27.36 Aligned_cols=31 Identities=13% Similarity=-0.015 Sum_probs=28.5
Q ss_pred CceeCCCCcch-hhhhHHHHHhcCCcEEEEEe
Q psy5094 12 VNTFSPEGRLF-QVEYAIEAIKLGSTAIGIST 42 (251)
Q Consensus 12 ~~~fsp~G~l~-q~eya~~a~~~G~tvvgi~~ 42 (251)
+-+||+.|+-. -+|-|+++-.+|-++|+|+.
T Consensus 81 vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 81 VLIFTPDTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp EEEEESCSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 44899999997 89999999999999999998
No 54
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=36.30 E-value=26 Score=26.49 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=22.1
Q ss_pred EEEEEcCCCEEEcCHHHHHHHHHhhc
Q psy5094 216 LCTVTADKMYHLYSKEELEEELSKVS 241 (251)
Q Consensus 216 i~~i~~~~~~~~~~~~ei~~~~~~~~ 241 (251)
|+|+++++.|+.+++++|..+|..-+
T Consensus 25 I~Wt~~~geFklvdpe~VArLWG~rK 50 (157)
T 1hbx_G 25 ICWTSNDGQFKLLQAEEVARLWGIRK 50 (157)
T ss_dssp EEECSSSSCEEETTHHHHHHHHHHGG
T ss_pred eEEeCCCCEEEecCcHHHHHHHHhcc
Confidence 67888887799999999999997544
No 55
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=35.59 E-value=15 Score=25.37 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=21.4
Q ss_pred EEEEEcCCCEEEcCHHHHHHHHHhhc
Q psy5094 216 LCTVTADKMYHLYSKEELEEELSKVS 241 (251)
Q Consensus 216 i~~i~~~~~~~~~~~~ei~~~~~~~~ 241 (251)
|.+.++++.|+.+++++|..+|..-+
T Consensus 24 I~W~~~~g~Fkl~d~~~VArlWG~rK 49 (93)
T 1bc8_C 24 ICWTSNDGQFKLLQAEEVARLWGIRK 49 (93)
T ss_dssp SEECSSSSEEECTTHHHHHHHHHHHH
T ss_pred eEEeCCCCEEEecCHHHHHHHHHhcC
Confidence 56778876799999999999997544
No 56
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=33.84 E-value=47 Score=23.29 Aligned_cols=26 Identities=4% Similarity=0.091 Sum_probs=21.4
Q ss_pred EEEEEcC-CCEEEcCHHHHHHHHHhhc
Q psy5094 216 LCTVTAD-KMYHLYSKEELEEELSKVS 241 (251)
Q Consensus 216 i~~i~~~-~~~~~~~~~ei~~~~~~~~ 241 (251)
|.+++++ +.|+.+++++|..+|..-+
T Consensus 25 I~W~~~~~g~Fkl~dp~~VArlWG~rK 51 (103)
T 3jtg_A 25 MKWENRHEGVFKFLRSEAVAQLWGQKK 51 (103)
T ss_dssp EEEEETTTTEEEESSHHHHHHHHHHHT
T ss_pred cccccCCCceEEecCHHHHHHHHHhcc
Confidence 7889875 4599999999999997543
No 57
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=33.44 E-value=36 Score=24.09 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=21.0
Q ss_pred EEEEEcC-CCEEEcCHHHHHHHHHhhc
Q psy5094 216 LCTVTAD-KMYHLYSKEELEEELSKVS 241 (251)
Q Consensus 216 i~~i~~~-~~~~~~~~~ei~~~~~~~~ 241 (251)
|.+++++ +.|+.+++++|..+|..-+
T Consensus 29 I~W~~~~~g~Fkl~d~e~VArlWG~rK 55 (107)
T 1wwx_A 29 LEWEDREQGIFRVVKSEALAKMWGQRK 55 (107)
T ss_dssp CEEEETTTTEEECSCHHHHHHHHHHHH
T ss_pred EEeecCCCCEEEecCHHHHHHHHHhcC
Confidence 6788875 4599999999999997544
No 58
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=31.33 E-value=20 Score=25.02 Aligned_cols=26 Identities=4% Similarity=0.129 Sum_probs=21.2
Q ss_pred EEEEEcCCCEEEcCHHHHHHHHHhhc
Q psy5094 216 LCTVTADKMYHLYSKEELEEELSKVS 241 (251)
Q Consensus 216 i~~i~~~~~~~~~~~~ei~~~~~~~~ 241 (251)
|.+.++++.|+.+++++|..+|..-+
T Consensus 25 I~W~~~~g~Fklvd~e~VArlWG~rK 50 (98)
T 1fli_A 25 ITWEGTNGEFKMTDPDEVARRWGERK 50 (98)
T ss_dssp EECTTSSSSCEECCHHHHHHHHHHHT
T ss_pred eEEeCCCCEEEEcCHHHHHHHHHhcc
Confidence 56667776799999999999997544
No 59
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=29.89 E-value=31 Score=27.68 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=27.8
Q ss_pred ceeCCCCcchhhhhHHHHHhcCCcEEEEEeCC
Q psy5094 13 NTFSPEGRLFQVEYAIEAIKLGSTAIGISTSE 44 (251)
Q Consensus 13 ~~fsp~G~l~q~eya~~a~~~G~tvvgi~~~~ 44 (251)
|.||++|...--|++..|...|-..|+++-.+
T Consensus 8 t~~S~DG~~~~ee~v~~A~~~Gl~~iaiTDH~ 39 (267)
T 2yxo_A 8 TPLCGHAEGHPEAYLEEARAKGLKGVVFTDHS 39 (267)
T ss_dssp CGGGSSCCSCHHHHHHHHHHTTCSEEEEEEEC
T ss_pred cCCCCCCCCCHHHHHHHHHHcCCCEEEEcCCC
Confidence 57899999887799999999999999988654
No 60
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=29.35 E-value=22 Score=25.36 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=21.8
Q ss_pred EEEEEcCCCEEEcCHHHHHHHHHhhc
Q psy5094 216 LCTVTADKMYHLYSKEELEEELSKVS 241 (251)
Q Consensus 216 i~~i~~~~~~~~~~~~ei~~~~~~~~ 241 (251)
|.++++++.|+..++++|..+|..-+
T Consensus 20 I~W~~~~geFkl~d~e~VArlWG~rK 45 (110)
T 1awc_A 20 ISWVGDEGEFKLNQPELVAQKWGQRK 45 (110)
T ss_dssp SEECSSSSEEECSSHHHHHHHHHHHH
T ss_pred eEEeCCCCEEEecCHHHHHHHHHHcc
Confidence 57888876799999999999997544
No 61
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=29.11 E-value=34 Score=24.19 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=21.3
Q ss_pred EEEEEcCCCEEEcCHHHHHHHHHhhc
Q psy5094 216 LCTVTADKMYHLYSKEELEEELSKVS 241 (251)
Q Consensus 216 i~~i~~~~~~~~~~~~ei~~~~~~~~ 241 (251)
|+++++++.|+..++++|..+|..-+
T Consensus 31 I~W~~~~~~Fkl~dp~~VA~lWG~rK 56 (106)
T 4avp_A 31 IAWTGRGMEFKLIEPEEVARRWGIQK 56 (106)
T ss_dssp EEECSSTTEEEESSHHHHHHHHHHHT
T ss_pred CcccCCCceEEecCHHHHHHHHHhcc
Confidence 45778876799999999999997544
No 62
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=27.65 E-value=16 Score=30.97 Aligned_cols=45 Identities=16% Similarity=0.310 Sum_probs=29.6
Q ss_pred CeEEEECCCCceee-cCEEEeCCCchhHHHHHHhhhcCCCCHHHHH
Q psy5094 150 PQLFHLDPSGTYTQ-FDAKAIGSGSEGAQQSLQEVYHESMTLKEAI 194 (251)
Q Consensus 150 p~Ly~id~~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~ 194 (251)
|..|.||+.|.+.. ++.+-.+.....+...|++...+++++.+++
T Consensus 103 r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~~~~~~~~~~I 148 (322)
T 4eo3_A 103 RSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEEDLSLNKHI 148 (322)
T ss_dssp CEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHHHHHTSCCHHH
T ss_pred cEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhchhhhHHHHHH
Confidence 78899999999975 4444455555667777766555455554444
No 63
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=22.14 E-value=2e+02 Score=22.35 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=30.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhcCCCCcEEEEEEEcCCC
Q psy5094 185 HESMTLKEAINHVLTILKQVMEEKLNSTNVELCTVTADKM 224 (251)
Q Consensus 185 ~~~~s~~ea~~l~~~~l~~~~~~d~~~~~i~i~~i~~~~~ 224 (251)
.+.+++++|.+++..++..+.+.. -.+-|.|+|..+.
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~g---~pV~IaVvD~~G~ 98 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKDG---RHVSVAVVDRNGN 98 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTT---CCCEEEEEETTSC
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcC---CCEEEEEEeCCCC
Confidence 468999999999999999987752 2688899988755
Done!